RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10133
(342 letters)
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 351 bits (904), Expect = e-119
Identities = 135/310 (43%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
ALGSDTGGS R PA++CGVVG KPTYG VSR+GLI +S+D G RTVED A + N
Sbjct: 154 AALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLN 213
Query: 81 VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
IAG D +D T+ + T D+ L IGVP+EY E + PEV + E+ +K +
Sbjct: 214 AIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKLE 273
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
GA++ +VSLPHT+ ++ Y I+ E +SN+ARY G+ YG+R +++ +TR
Sbjct: 274 DLGAEIVEVSLPHTKYALPAYYIIAPAEASSNLARYDGVRYGYRA-EDAKDLEEMYEKTR 332
Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLT 259
+ FG VK RI+ G Y L Y+ Y+LKA KVR+LI QDF + + V ++ PT T
Sbjct: 333 SEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEK-VDVILGPTAPT 391
Query: 260 TAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
TA + + + D+ + D T PANLAG PAISVP LPV +QL+ F +
Sbjct: 392 TAFKIGE--KTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEE 449
Query: 320 LLLNLAHWLE 329
LLN+A+ E
Sbjct: 450 TLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 296 bits (759), Expect = 1e-97
Identities = 134/312 (42%), Positives = 198/312 (63%), Gaps = 8/312 (2%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+LGSDTGGS R PAS+CGVVGFKPTYG VSR+GL+ +S+D G RTVED A + +
Sbjct: 154 FSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLD 213
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQL--DLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
VI+G D RD T+ + P ++L DL L +GV +E+ SE + EV + +E+ L+++
Sbjct: 214 VISGHDKRDSTSAKVPD-PEFFEELKKDLKGLKVGVVKEF-SEEMDKEVQEKFENALEVL 271
Query: 139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
+ GA++ +VS PH + ++ Y I++ E +SN+ARY G+ YG+R+ NS +L A+T
Sbjct: 272 EELGAEIVEVSFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIE-EPNSLKELYAKT 330
Query: 199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
R + FG VK RI+ GNY L Y+ Y+LKA KVR+LI DFL+++ V +V+PT
Sbjct: 331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLF-EEVDVIVSPTAP 389
Query: 259 TTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQD 318
T + + +LD+ + + D T PANLAG PAISVP + + LP+ +Q++ F D
Sbjct: 390 TLPFKIGE--KLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDD 447
Query: 319 GLLLNLAHWLES 330
LL +++ E
Sbjct: 448 KTLLQVSYAFEQ 459
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 290 bits (744), Expect = 4e-95
Identities = 133/318 (41%), Positives = 176/318 (55%), Gaps = 21/318 (6%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G VP +ALGSDTGGS R PA++CG+VG KPTYG VSR+G++PL +S+D G L RTV D
Sbjct: 168 GLVP-LALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDA 226
Query: 76 ATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEY-KSEHISPEVMDTWESV 134
A + +VIAG D RD P L DL L IGVP+E + P+V +E+
Sbjct: 227 ALLLDVIAGPDPRDSPLPPPPPVPPALAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAA 286
Query: 135 LKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQL 194
+K + AGA+V +VSLP Y++ A +AR+ G YG R L
Sbjct: 287 VKALEAAGAEVVEVSLPL---LSDDYALA-----AYYLARFDGERYGLRA-------ADL 331
Query: 195 LAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVT 254
+TR + FG VK RI+ G Y L Y+ Y+ +A K LI + F +++ V L+T
Sbjct: 332 YGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKT--LIRRAFDKLFEE-VDVLLT 388
Query: 255 PTTLTTAPLV-SQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMA 313
PTT T AP + D+ + + D T PANLAG PAISVP + + LPV +QL+
Sbjct: 389 PTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIG 448
Query: 314 PNFQDGLLLNLAHWLESQ 331
P F D LL LA LE
Sbjct: 449 PAFDDATLLRLAAALEQA 466
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 254 bits (652), Expect = 7e-82
Identities = 115/319 (36%), Positives = 158/319 (49%), Gaps = 34/319 (10%)
Query: 13 TGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTV 72
G VP +A+G+DTGGS R PA++CG+VG KPTYG VSR+G++P +S+D G L RTV
Sbjct: 138 VAAGLVP-LAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTV 196
Query: 73 EDCATVYNVIAGSDHRDPTTVQKNISPVTLDQL---DLSRLVIGVPEEYKSEHISPEVMD 129
ED A + +VIAG D DPT + L L IGVP E + PEV
Sbjct: 197 EDAALLLDVIAGYDPADPT--SAPSPVPDFAEPLKKSLKGLRIGVPREDFYFSLDPEVQR 254
Query: 130 TWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVN 189
+ G +V +V P + ++ Y I+ E +SN++
Sbjct: 255 AVRKAAAALEALGHEVVEVEPPSLKHALPLYYIIAPAEASSNLSDL-------------- 300
Query: 190 STDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGV 249
D+L R + G VK RI G Y L Y+LKA KVR L+ ++F ++ +
Sbjct: 301 --DELYPRIRDELLGDEVKRRIELGAYALSAGYSGAYYLKAQKVRRLLRREFAGLFEE-L 357
Query: 250 HALVTPTTLTTAP----LVSQYIQLDNREQCSVQDYC--TQPANLAGCPAISVPINLSHE 303
L++PTT T AP L N + D+ T PANLAG PAIS+P S +
Sbjct: 358 DVLLSPTTPTPAPRLGEAADSPTVLYN-----LLDFTANTVPANLAGLPAISLPAGFSED 412
Query: 304 KLPVSIQLMAPNFQDGLLL 322
LPV +Q++ P D LL
Sbjct: 413 GLPVGLQIIGPPGDDETLL 431
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 184 bits (468), Expect = 1e-54
Identities = 91/316 (28%), Positives = 160/316 (50%), Gaps = 28/316 (8%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
A+GSDTG S R PAS+ G VGFKP+YG +SR+GL +S+D T V D + V
Sbjct: 135 AIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKV 194
Query: 82 IAGSDHRDPTTVQKNIS------PVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVL 135
+ G D D T+V I+ P + LD + + V ++ ++
Sbjct: 195 LFGKDENDLTSVDVKINNVKKTKPKKVAYLDC------------FKELEEYVAKKYKKLI 242
Query: 136 KLMAKAGAQVKKVSLPHT--QSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQ 193
++ +V+K+ + ++ Y I++ E +SN+A G+ +G+R +S ++
Sbjct: 243 NILKSENIEVEKIKIDEKLLKAIKPVYKIISYSEASSNLANLNGIAFGNR--EKGSSWEE 300
Query: 194 LLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALV 253
++ TR + FG +V+ R++ G+YFL + N E YFLKA KVR +I + + H+ ++
Sbjct: 301 IMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESI-HNKFDIVI 359
Query: 254 TPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMA 313
P AP I + + + DY +NL G P++S+P+ + LP ++ + +
Sbjct: 360 YPAYADIAP----DIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNLAIDS 414
Query: 314 PNFQDGLLLNLAHWLE 329
+ D LL+ + ++E
Sbjct: 415 KIYDDEKLLSYSLYIE 430
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 147 bits (373), Expect = 1e-40
Identities = 99/323 (30%), Positives = 147/323 (45%), Gaps = 38/323 (11%)
Query: 14 GQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVE 73
G VP +LGSDT GS R PAS CGV G KPTYG +SR G+ P V S+D G R+VE
Sbjct: 158 AAGLVP-FSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVE 216
Query: 74 DCATVYNVIAGSDHRDPTTVQKNISPVTLDQLD--LSRLVIGVPEEYKSEHISPEVMDTW 131
D A Y+V+ G D +DP + P T+ L +S L I V + ++ PE
Sbjct: 217 DLALAYDVMQGPDPQDPFCTDRPAEP-TVPLLPAGISGLRIAVLGGWFQQNADPEA---- 271
Query: 132 ESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNST 191
+ + +AKA V LP + + ++ E + H
Sbjct: 272 LAAVGRVAKALGATTIVELPDAERARAAAFVITASEGGNL----------HL-------- 313
Query: 192 DQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHA 251
D L TR F + R+LAG LL +++ +A + R ++ V
Sbjct: 314 DAL--RTRPQDFDPATRDRLLAG--ALLP---ASWYAQAQRFRHWFRDAIRELFQR-VDV 365
Query: 252 LVTPTTLTTAPLVSQYIQLDNREQCSVQDYC---TQPANLAGCPAISVPINLSHEKLPVS 308
L+ P T +APL+ Q + + V+ TQP + AG P ++ P+ +LP+
Sbjct: 366 LIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRP-GRLPIG 424
Query: 309 IQLMAPNFQDGLLLNLAHWLESQ 331
+QL+A +++ L L A LE Q
Sbjct: 425 VQLIAAPWREDLCLRAAAVLERQ 447
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 147 bits (372), Expect = 2e-40
Identities = 100/322 (31%), Positives = 148/322 (45%), Gaps = 40/322 (12%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G VP LGSDT GS R PAS CG+ G KPTYG +SR G P V S+D G R+V D
Sbjct: 167 GLVP-FTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADL 225
Query: 76 ATVYNVIAGSDHRDPTTVQKNISPVT--LDQLDLSRLVIGVPEEYKSEHISPEVMDTWES 133
A VY+V+ G D +DP + P LD+ L I V Y ++ PE +
Sbjct: 226 ALVYDVLQGPDPQDPFQADRPAEPTAPLLDR-GAEGLRIAVLGGYFAQWADPEAR---AA 281
Query: 134 VLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQ 193
V ++ GA ++V LP + I+ E + H
Sbjct: 282 VDRVAKALGAT-REVELPEAARARAAAFIITASEGGNL----------HL--------PA 322
Query: 194 LLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALV 253
L TR F + R+LAG +L ++++A + R Q L ++ V L+
Sbjct: 323 L--RTRPQDFDPASRDRLLAG--AMLP---AAWYVQAQRFRRWFRQAVLELFEH-VDVLI 374
Query: 254 TPTTLTTAPLVSQ-YIQLDNRE---QCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSI 309
P T +APL+ Q +++D E + ++ TQP + G P ++VP+ LP+ +
Sbjct: 375 APATPCSAPLIGQETMRIDGVELPVRANLGIL-TQPISFIGLPVVAVPLRTPGG-LPIGV 432
Query: 310 QLMAPNFQDGLLLNLAHWLESQ 331
QL+A +++ L L A LE Q
Sbjct: 433 QLIAAPWREDLALRAAAALEQQ 454
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 127 bits (321), Expect = 4e-33
Identities = 89/327 (27%), Positives = 141/327 (43%), Gaps = 54/327 (16%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
LG+DTGGS R PA+ CGVVG +PT G S G++P+ ++ D G + R+V D A + V
Sbjct: 173 GLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAV 232
Query: 82 IAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKA 141
I G +PV L L R +GVP + + P+V E+ L +A A
Sbjct: 233 ITGDAAL--------PAPVALAGL---R--LGVPAAPFWDGLDPDVAAVAEAALAKLAAA 279
Query: 142 GAQVKKVSLPHTQS-------SIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQL 194
G ++ LP I Y E +++ Y G V+ ++L
Sbjct: 280 GVTFVELDLPGLHELNEAVGFPIALY------EALADLRAYL-RENGAGVS-----FEEL 327
Query: 195 LAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKAL-----KVRSLIAQDFLRVWHSGV 249
+A + + + + E+ + AL ++++ Q F R G+
Sbjct: 328 VARIASPDVRAIFRDLLDPP------QISEDAYRAALDVGRPRLQAWYRQAFAR---HGL 378
Query: 250 HALVTPTTLTTAPLVSQ-YIQLDNREQCS-----VQDYCTQPANLAGCPAISVPINLSHE 303
A++ PTT TAP + + N +++ T PA+ AG P +S+P L+
Sbjct: 379 DAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRN--TDPASNAGLPGLSLPAGLTPH 436
Query: 304 KLPVSIQLMAPNFQDGLLLNLAHWLES 330
LPV ++L P D LL + LE
Sbjct: 437 GLPVGLELDGPAGSDRRLLAIGRALER 463
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 121 bits (306), Expect = 4e-31
Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 75/332 (22%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
ALG+DTGGS R PA+ CG+ GFKPT V G +PL ++D G L R+V CA V
Sbjct: 175 AALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDA 234
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
V+AG + PV L L + VP + + V +E LK ++
Sbjct: 235 VLAGEE------------PVVPAARPLEGLRLAVPTTVVLDGLDATVAAAFERALKRLSA 282
Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGL-----FYGHRVTPSVNSTDQLL 195
AGA +++++ P E+A A+ G + HR LL
Sbjct: 283 AGAIIEEIAFPELA------------ELAEINAKG-GFSAAESYAWHR---------PLL 320
Query: 196 AETRKDAFGLVVKSRIL------AGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGV 249
A R D + V +RIL A +Y L L A + IA+ R+ +
Sbjct: 321 ARHR-DQYDPRVAARILRGEPMSAADYIDL--------LAAR--AAWIARAAARL--ARF 367
Query: 250 HALVTPTTLTTAPLVSQYIQLDNR---------EQCSVQDYCTQPANLAGCPAISVPINL 300
ALV PT P ++ D S+ ++ L GC A+S+P +
Sbjct: 368 DALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINF------LDGC-ALSLPCHA 420
Query: 301 SHEKLPVSIQLMAPNFQDGLLLNLAHWLESQV 332
E PV + L +D LL +A +E+ +
Sbjct: 421 PGE-APVGLMLAGAPGRDDRLLAIALAVEAVL 451
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 120 bits (303), Expect = 2e-30
Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 54/338 (15%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+A+G D GGS R P+++CG+ G KPT+G V G P+ ++D G +T TV D A +
Sbjct: 186 MAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLE 245
Query: 81 VIAGSDHRDPTTVQKNISPV-----TLDQLDLSRLVIGVPEE-YKSEHISPEVMDTWESV 134
VIAG D DP Q PV LD+ + L IG+ E + + PEV + +
Sbjct: 246 VIAGRDGLDPR--QPAQPPVDDYTAALDR-GVKGLKIGILREGFGLPNSEPEVDEAVRAA 302
Query: 135 LKLMAKAGAQVKKVSLP------HTQSSIVTYSILNQCEVASNMA-RYTGLFYGHRVTPS 187
K + GA V++VS+P + I T Q + + + GL+
Sbjct: 303 AKRLEDLGATVEEVSIPLHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLY-------- 354
Query: 188 VNSTDQLLA------ETRKDAFGLVVKSRILAGNYFLLKRNYEN-YFLKALKVRSLIAQD 240
LL R D VK +L G Y L Y Y+ KA + +
Sbjct: 355 ---DTGLLDAFGAGWRERADDLSETVKLVMLLGQYGL--ERYHGRYYAKARNLARRLRAA 409
Query: 241 FLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYC---------TQPANLAGC 291
+ LV PTT P+V+ + S ++Y T P ++ G
Sbjct: 410 YDEALRK-YDLLVMPTT----PMVATPLP---APDASREEYVSRALEMIANTAPFDVTGH 461
Query: 292 PAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
PA+SVP L + LPV + L+ +F + +L A E
Sbjct: 462 PAMSVPCGLV-DGLPVGLMLVGRHFDEATILRAAAAFE 498
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 114 bits (286), Expect = 2e-28
Identities = 87/313 (27%), Positives = 135/313 (43%), Gaps = 43/313 (13%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
IA+GSDTGGS R PA+ G+VGFKPT + G PL S+D G L RTV DCA
Sbjct: 145 IAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADA 204
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
V+AG P+ L+ L ++ L IG+P+ Y + P+V +E+ L + K
Sbjct: 205 VMAGE------------KPIPLEVLPVAGLRIGLPKGYLLADMEPDVAAAFEASLAALEK 252
Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
AGA++ + + ++ + A+ + G+ + D L
Sbjct: 253 AGARI---------ADLAIDDLIARLAEATRIGSIAGI-EASHI-----HADWLADL--D 295
Query: 201 DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRS-LIAQDFLRVWHSGVHALVTPTTLT 259
+ VK + +K E Y + ++ R+ L R+ +G P T
Sbjct: 296 ANVDIRVKRPLSRR----IKVPLEAY-HRLMRTRAALARAMDERL--AGFDMFALPATPI 348
Query: 260 TAPLVSQYIQLDNREQCSVQDYC---TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNF 316
AP ++ + D E V++ TQ AN +I++P + LP + L A N
Sbjct: 349 VAPTIAS-VSEDEEEYDRVENLLLRNTQVANQFDLCSITLP--MPGMALPAGLMLTARNG 405
Query: 317 QDGLLLNLAHWLE 329
D LL A +E
Sbjct: 406 SDRRLLAAAASVE 418
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 112 bits (283), Expect = 1e-27
Identities = 83/319 (26%), Positives = 128/319 (40%), Gaps = 42/319 (13%)
Query: 13 TGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTV 72
+G VP ALG+DT GS R PA+ +VG KPT G VS G++P S+D I TV
Sbjct: 122 VARGLVP-FALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTV 180
Query: 73 EDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPE----EYKSEHISPEVM 128
D V + A D RDP + P + +GVP E+ + +
Sbjct: 181 ADAEQVLRIAAAPDARDPYSRP---LPAAALRRFPPPPRVGVPRAAQLEFFGDSQAEAA- 236
Query: 129 DTWESVLKLMAKAGAQVKKVSL-PHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPS 187
+ + ++ + G +V ++ P E A+ + Y G + R +
Sbjct: 237 --FAAAVERLEALGVEVVEIDFAPFL-------------ETAALL--YEGPWVAERYA-A 278
Query: 188 VNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYEN-YFLKALKVRSLIAQDFLRVWH 246
V E + DA VV+ I + F + Y L AL+ ++ +
Sbjct: 279 VGE----FVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKA------EALL- 327
Query: 247 SGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLP 306
+GV L+ PT T P + + + D S T NL A++VP + LP
Sbjct: 328 AGVDVLLVPTA-PTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLP 385
Query: 307 VSIQLMAPNFQDGLLLNLA 325
+ L+ P F D L +L
Sbjct: 386 FGVTLIGPAFHDAALASLG 404
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 107 bits (269), Expect = 5e-26
Identities = 91/332 (27%), Positives = 133/332 (40%), Gaps = 59/332 (17%)
Query: 14 GQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPL-----VNSMDVPGIL 68
G GP +++G+D GGS R PAS+CG GFKPT+ G +PL ++ G +
Sbjct: 167 GMGP---LSVGTDGGGSVRIPASFCGTFGFKPTF------GRVPLYPASPFGTLAHVGPM 217
Query: 69 TRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSE----HIS 124
TRTV D A + +VIA D RD + + P T L R V G+ Y +
Sbjct: 218 TRTVADAALLLDVIARPDARDWSALP---PPTTSFLDALDRDVRGLRIAYSPTLGYVDVD 274
Query: 125 PEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRV 184
PEV ++ +A GA+V++V P + + +L + AR +
Sbjct: 275 PEVAALVAQAVQRLAALGARVEEVD-PGFSDPVEAFHVL----WFAGAARLLR-----AL 324
Query: 185 TPSVNS-TDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLR 243
P + D L G A +Y L A VR+ + +
Sbjct: 325 PPGQRALLDPGLRRIA--ERGA----TYSASDY-----------LDATAVRAALGAR-MG 366
Query: 244 VWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYC-----TQPANLAGCPAISVPI 298
+H L+TPT A D + D+ T P NL PA SVP
Sbjct: 367 AFHERYDLLLTPTLPIPAFEAGH----DVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPC 422
Query: 299 NLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330
+ LPV +Q++ P D L+L +A E
Sbjct: 423 GFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQ 454
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 105 bits (263), Expect = 2e-25
Identities = 80/316 (25%), Positives = 117/316 (37%), Gaps = 55/316 (17%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
ALG+DTGGS R PAS+CG+ G +PT+G +S G++PL S D G R + V
Sbjct: 126 FALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGE 185
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
V+ G D ++ Q RL+I V + P V E+ L +
Sbjct: 186 VLLGDDAQEFPLTQ--------------RLLIPVDLF---ALLDPAVRAALEAALARLRP 228
Query: 141 AGAQVKKVSLPHTQSSIV----TYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLA 196
K S+P S+ + +L E T
Sbjct: 229 HLGPAKPASVP--PLSLDEWYEAFRVLQAAEAW--------------------ETHGAWI 266
Query: 197 ETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPT 256
+ G V R AG ++A + R L L+ PT
Sbjct: 267 SSGNPQLGPGVADRFAAG------AEVTADQVEAARARRAAFARELAALLGPDAVLLLPT 320
Query: 257 TLTTAPLVSQYIQL--DNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAP 314
APL + RE+ +++ C A LAG P IS+P+ S + P + L+ P
Sbjct: 321 VPGAAPLRGAPFEALEAYRER-ALRLLC--IAGLAGLPQISLPLA-SVDGAPFGLSLIGP 376
Query: 315 NFQDGLLLNLAHWLES 330
D LL LA + +
Sbjct: 377 RGSDRSLLALAQTIAA 392
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 103 bits (259), Expect = 1e-24
Identities = 92/339 (27%), Positives = 128/339 (37%), Gaps = 63/339 (18%)
Query: 20 TIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVY 79
+A+G++T GS PA+ G+VG KPT G VSR G++P+ +S D G +TRTV D A V
Sbjct: 176 AVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVL 235
Query: 80 NVIAGSDHRDPTTVQKNISPVT----LDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVL 135
IAG D DP T V LD L +GV Y H PEV +E L
Sbjct: 236 TAIAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYLGYH--PEVDAQFERAL 293
Query: 136 KLMAKAGAQVKKVSLPHTQSSI--VTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQ 193
+ AGA V V +L E + + Y H P V +
Sbjct: 294 AELKAAGAVVIDVVDL-DDGDWGEAEKVVL-LHEFKAGLNAYLRSTAPH--AP-VRTLAD 348
Query: 194 LLAETRKDA------FGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHS 247
L+A R FG + F +A L +L
Sbjct: 349 LIAFNRAQHAREMPYFG-------------------QELFEQAQAAPGLDDPAYLDALAD 389
Query: 248 -----------------GVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAG 290
+ ALV PTT + I D+ S + PA +AG
Sbjct: 390 AKRLAGPEGIDAALKEHRLDALVAPTTGPAWLI--DLINGDSFGGSS-----STPAAVAG 442
Query: 291 CPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
P ++VP+ + LPV + + + + LL L + E
Sbjct: 443 YPHLTVPMGQV-QGLPVGLSFIGAAWSEARLLELGYAYE 480
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 98.0 bits (245), Expect = 2e-22
Identities = 84/316 (26%), Positives = 130/316 (41%), Gaps = 42/316 (13%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G V ALG+DT GS R PA++ +VG KPT G +S G++P ++D + TV+D
Sbjct: 162 GLVS-FALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDA 220
Query: 76 ATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVM-DTWESV 134
V V+AG D DP + +P + +GVP + E + +
Sbjct: 221 DAVLAVMAGFDPADPYSRA---NPADAPAALPAGPRVGVPRAAQLEFFGDAEAEAAFAAA 277
Query: 135 LKLMAKAGAQVKKVSL-PHTQSSIVTYSILNQCE---VASNMARYTGLFYGHRVTPSVNS 190
L + GA++ ++ P +++ + Y E VA RY + G
Sbjct: 278 LARLEALGAELVEIDFSPFLEAARLLY------EGPWVAE---RYAAV--GE-------- 318
Query: 191 TDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYEN-YFLKALKVRSLIAQDFLRVWHSGV 249
E DA VV+ I F + Y L L+ + V +G+
Sbjct: 319 ----FLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAA------EAVL-AGI 367
Query: 250 HALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSI 309
AL+ PT T P +++ + D S T NL A++VP + LP +
Sbjct: 368 DALLVPTA-PTHPTIAE-VAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGV 425
Query: 310 QLMAPNFQDGLLLNLA 325
L+AP F D L +LA
Sbjct: 426 TLIAPAFADQALADLA 441
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 94.7 bits (236), Expect = 2e-21
Identities = 88/333 (26%), Positives = 129/333 (38%), Gaps = 53/333 (15%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVN-------SMDVPGILTRTVED 74
++GSD GGS R PA YCGV KPT G V G IP + V G + R+ D
Sbjct: 175 SIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARD 234
Query: 75 CATVYNVIAGSD-HRDPTTVQKNISPVTLDQL-DLSRLVIGVPEEYKSEHISPEVMDTWE 132
A + +V+AG D + + P +L D LV+ +E+ V E
Sbjct: 235 LALLLDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVL---DEHPLLPTDAAVRAAIE 291
Query: 133 SVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTD 192
+ +A AGA+V + S L ++ + Y L + +
Sbjct: 292 RLAAALADAGARVVRHSPL-----------LPDLAESARL--YMRLLFA---ASAARFPP 335
Query: 193 QLLAETRKDAFGLVVKSRILAGNYF----LLKRNYENYFLKALKVRSLIAQDFLRVWHSG 248
A+ + A GL R LA L R++ L A R + + R +
Sbjct: 336 DAYADAQARAAGLSADDRSLAAERLRGAVLSHRDW----LFADAAREELRAAWRRFFAE- 390
Query: 249 VHALVTPTTLTTA-------PLVSQYIQLDNREQCSVQDYCTQ-----PANLAGCPAISV 296
++ P T T A + + I +D Y Q A L G PA ++
Sbjct: 391 FDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVS----YPYWDQLVWAGLATLPGLPATAI 446
Query: 297 PINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
PI LS LPV +Q++ P +D L LA LE
Sbjct: 447 PIGLSATGLPVGVQIVGPALEDRTPLRLAELLE 479
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 93.2 bits (232), Expect = 5e-21
Identities = 87/330 (26%), Positives = 133/330 (40%), Gaps = 64/330 (19%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G VP +A+G+DTGGS R PA++ G+VG+K T G S G+ PL S+D G L R+V D
Sbjct: 167 GLVP-VAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDA 225
Query: 76 ATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVL 135
+ + G D + L+ L + VPE + P V +E+ +
Sbjct: 226 VWIDAAMRGLTAPDVV------------RRPLAGLRLVVPETVVFDDAEPGVRAAFEAAV 273
Query: 136 KLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGL-----FYGHRVTPSVNS 190
+ + AGA V++ + P Q E+ +AR+ L F H+ ++
Sbjct: 274 ERLQAAGALVERQAFPAFQ------------EILDLIARHGWLVTAEAFALHQ--ERLDG 319
Query: 191 TDQLLAETRKDAFGLVVK-----SRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVW 245
D + R VVK +I A +Y L L+ R + R
Sbjct: 320 PDAARMDPR------VVKRTRLGRKITASDYIAL-----------LEARERLIAQVTR-- 360
Query: 246 HSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYC-----TQPANLAGCPAISVPINL 300
G L TPT AP ++ L+ + T P N +S+P
Sbjct: 361 ELGGALLATPTVAHVAPPLA---PLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGT 417
Query: 301 SHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330
+PV + L AP +D LL A +E+
Sbjct: 418 GAAGMPVGLLLSAPAGRDERLLRAALAVEA 447
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 88.5 bits (220), Expect = 2e-19
Identities = 90/346 (26%), Positives = 131/346 (37%), Gaps = 78/346 (22%)
Query: 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDV----PGI 67
G VP IA +D GGS R PA+ CG+VG KP+ G R L P + + V G+
Sbjct: 164 LVAAGVVP-IAHANDGGGSIRIPAACCGLVGLKPSRG---RLPLDPELRRLPVNIVANGV 219
Query: 68 LTRTVEDCATVYNVIAGSDHRDPTTVQKN--ISPVTL-DQLDLSRLVIGV-PEEYKSEHI 123
LTRTV D A Y R+ +N + P+ RL I V +
Sbjct: 220 LTRTVRDTAAFY--------REAERYYRNPKLPPIGDVTGPGKQRLRIAVVTDSVTGREA 271
Query: 124 SPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHR 183
PEV + + +L+ + G +V+ V LP S + + + Y G
Sbjct: 272 DPEVREAVLATARLLEELGHRVEPVDLPVPASFVDDFLL------------YWGFL---- 315
Query: 184 VTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYF------LLKRNYENYFLKAL-KVRSL 236
AF LV R G F L + + L ++
Sbjct: 316 ------------------AFALVRGGRRTFGPSFDRTRLDNLTLGLARHARRNLHRLPLA 357
Query: 237 IAQ--DFLRV---WHSGVHALVTPTTLTTAPLV------SQYIQLDNREQCSVQDYC--T 283
IA+ RV + ++TPT T P + + + +R + Y T
Sbjct: 358 IARLRRLRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDR----LISYVAFT 413
Query: 284 QPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
N G PAIS+P+ S + LPV + A + LL LA+ LE
Sbjct: 414 PLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELE 459
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 86.4 bits (214), Expect = 1e-18
Identities = 81/333 (24%), Positives = 130/333 (39%), Gaps = 50/333 (15%)
Query: 11 NFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTR 70
NFT +++G++T GS +PA VVG KPT G +SR G+IP S D G R
Sbjct: 183 NFT------VVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFAR 236
Query: 71 TVEDCATVYNVIAGSDHRDPTTVQKN--ISPVTLDQLDLSRLV---IGV-----PEEYKS 120
TV D A + + G D +D T + LD + L IGV E Y+S
Sbjct: 237 TVTDAAILLGSLTGVDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYES 296
Query: 121 EHISPEVMDTWESVLKLMAKAGAQ-VKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLF 179
++ ++++ GA V+ + +P +L + + + +
Sbjct: 297 G---EYDEKLFKETIEVLRSEGATVVEDIDIPSFHREWSWGVLLYELKHSLDN------- 346
Query: 180 YGHRVTPS--VNSTDQLLAETRKDAFGLVVKSRILA-GNYFLLKRNYENYFLKALKVRSL 236
Y ++ + V+S +L+ F + R L G L +R L+ + +
Sbjct: 347 YLSKLPSTIPVHSISELM------EFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNA 400
Query: 237 IAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISV 296
+D G+ + L A L YI T A AG P+I++
Sbjct: 401 RLEDIYFSQEQGIDFALEKYNL-DAILFPSYIG------------STICAK-AGYPSIAI 446
Query: 297 PINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
P P I L + F +G L+ LA+ E
Sbjct: 447 PAGYMEGGRPFGITLASTAFSEGTLIKLAYAFE 479
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 83.9 bits (208), Expect = 6e-18
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 42/153 (27%)
Query: 14 GQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVP------GI 67
G GP + LG+D GGS R PA +CG+VG KP+ G IP+ D P G
Sbjct: 166 GYGP---LHLGTDIGGSVRLPAGWCGIVGLKPS------LGRIPI----DPPYTGRCAGP 212
Query: 68 LTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVI------------GVP 115
+TRTV+D A + +V++ D RD T ++ P +D DL V G+
Sbjct: 213 MTRTVDDAALLMSVLSRPDARDGT----SLPPQDIDWSDLDIDVRGLRIGLMLDAGCGLA 268
Query: 116 EEYKSEHISPEVMDTWESVLKLMAKAGAQVKKV 148
+ PEV E+ + AGA V+ V
Sbjct: 269 VD-------PEVRAAVEAAARRFEAAGAIVEPV 294
Score = 43.0 bits (102), Expect = 1e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 283 TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330
T P N++ PA S+ + + LP+ +Q++ P F D +L LA E
Sbjct: 403 TVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEG 450
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 81.1 bits (200), Expect = 7e-17
Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 55/327 (16%)
Query: 20 TIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVY 79
+A+G++T GS PA+ VVG +P+ G VSR G+IPL ++D G + RTV+D AT++
Sbjct: 241 PLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLF 300
Query: 80 NVIAGSDHRDPTT-------VQKNISPVTLDQLDLSRL-VIGVPEEYKSEHISPEVMDTW 131
N + G D +D T +++D L ++ ++ + + + V
Sbjct: 301 NAMIGYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD--QQDENRKAVA--- 355
Query: 132 ESVLKLMAKAGAQ-VKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNS 190
E + K + AGA + L + L E N+ Y + + V S
Sbjct: 356 EKIRKDLQDAGAILTDYIQL--NNGGVDNLQTLEY-EFKHNVNDY----FSQQKNVPVKS 408
Query: 191 TDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENY----FLKALKVRSLIAQDFLRVW- 245
++++A +KD+ K RI G + F K ++ A+ L +
Sbjct: 409 LEEIIAFNKKDS-----KRRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKKELDRYL 463
Query: 246 -HSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEK 304
G+ ALV ++N E + +AG P ++VP +
Sbjct: 464 VEKGLDALVM---------------INNEE--------VLLSAVAGYPELAVPAGYDNNG 500
Query: 305 LPVSIQLMAPNFQDGLLLNLAHWLESQ 331
PV + F + L N+ + E Q
Sbjct: 501 EPVGAVFVGKQFGEKELFNIGYAYEQQ 527
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 72.6 bits (178), Expect = 4e-14
Identities = 79/330 (23%), Positives = 120/330 (36%), Gaps = 56/330 (16%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G P +ALGSD GGS R P+++CG+ G KP +S + V G + R+V D
Sbjct: 166 GLAP-VALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDA 224
Query: 76 ATVYNVIAGSDHRDPTTVQKNISP-VTLDQLDLSRLVIGVPEEYKSE---HISPEVMDTW 131
A + + TTV V + RL I + + + +
Sbjct: 225 ALLLDAT--------TTVPGPEGEFVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAV 276
Query: 132 ESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTP-SVNS 190
L+ G V + ++ Y + R+ F G +
Sbjct: 277 HQAGALLRDLGHDVVVRDPDYPAATYANY-----------LPRF---FRGISDDADAQAH 322
Query: 191 TDQLLAETRKDA-FGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGV 249
D+L A TR A G R +A L+A +V ++ ++ V
Sbjct: 323 PDRLEARTRAIARLGSFFSDRRMAA-------------LRAAEVV--LSARIQSIFDD-V 366
Query: 250 HALVTPTTLTTAPLVSQYIQLDNREQCSVQ-------DYCTQPANLAGCPAISVPINLSH 302
+VTP T T + Y R S Y Q NL G PA VP +
Sbjct: 367 DVVVTPGTATGPSRIGAY---QRRGAVSTLLLVVQRVPYF-QVWNLTGQPAAVVPWDFDG 422
Query: 303 EKLPVSIQLMAPNFQDGLLLNLAHWLESQV 332
+ LP+S+QL+ + + LL LA +ES
Sbjct: 423 DGLPMSVQLVGRPYDEATLLALAAQIESAR 452
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 71.1 bits (174), Expect = 1e-13
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
+LG+DTGGS R PASYCG+ GF+P++G VS G+IP+ S D G R V +V
Sbjct: 128 SLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVILKRVGHV 187
Query: 82 IAGSDHRDPT 91
+ +P
Sbjct: 188 LLQQPDVNPI 197
Score = 36.0 bits (83), Expect = 0.027
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 286 ANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWL 328
A ++G +S+P+ L H+ LPVS+ L+A + DG LLNL L
Sbjct: 377 AGVSGFCQVSIPLGL-HDNLPVSVSLLAKHGSDGFLLNLVESL 418
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 65.4 bits (160), Expect = 1e-11
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIP--LVNSMDVPGILTRTVEDCATV 78
+A GSD GS RNPA++ V GF+P+ G V HG V + G + RTVED A +
Sbjct: 176 VADGSDMMGSLRNPAAFNNVYGFRPSQGRVP-HGPGGDVFVQQLGTEGPMGRTVEDVALL 234
Query: 79 YNVIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIG--------VPEEYKSEHISPEVMD 129
V AG D RDP ++ ++ + + DL I +P E V++
Sbjct: 235 LAVQAGYDPRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGGYLPME-------AGVLE 287
Query: 130 TWESVLKLMAKAGAQVKKVSLP 151
E+ L + + G V+
Sbjct: 288 LCEAALATLRELGCDVEAALPA 309
Score = 46.5 bits (111), Expect = 1e-05
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 285 PANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAH 326
PA LAG PAISVP+ + LP+ +Q++ P D +L LAH
Sbjct: 424 PATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAH 465
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 63.9 bits (155), Expect = 4e-11
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
IA+G++T GS PAS VG+KP+ G V+ G+IPL + D PG LTRTV D N
Sbjct: 333 IAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTN 392
Query: 81 VIAGSDHRDP 90
+ + P
Sbjct: 393 ALTNTTSNPP 402
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 62.9 bits (153), Expect = 5e-11
Identities = 85/354 (24%), Positives = 133/354 (37%), Gaps = 65/354 (18%)
Query: 18 VPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNS-------MDVPGILTR 70
+ +A SD GGS R PAS+ G++G KP+ G IP+ V LT+
Sbjct: 159 IVALAAASDGGGSIRIPASFNGLIGLKPS------RGRIPVGPGSYRGWQGASVHFALTK 212
Query: 71 TVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDT 130
+V D + + P + +S +L Q L I +S SP +D
Sbjct: 213 SVRDTRRLLYYLQMYQMESPFPLAT-LSKESLFQSLQRPLKIAF--YQRSPDGSPVSLDA 269
Query: 131 WESVLK---LMAKAGAQVKKVS-LP-HTQSSIVTYSILNQCEVASNMARYTGLFYGHRVT 185
+++ + + + G +V ++ P + +Y I+N E A+ G +T
Sbjct: 270 AKALKQAVTFLREQGHEVVELEEFPLDMTEVMRSYYIMNSVETAAMFDDIEDAL-GRPMT 328
Query: 186 PSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVW 245
D ET A I A Y + + ++ Y S F
Sbjct: 329 ----KDDM---ETMTWAI-YQSGQDIPAKRYSQVLQKWDTY--------SATMASF---- 368
Query: 246 HSGVHALVTPTTLTTAP----------LVSQYIQLDNREQCSVQDYC------------- 282
H L+T TT T AP L++ Q + Q+
Sbjct: 369 HETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPY 428
Query: 283 TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNI 336
T ANL G PAIS+P + E LP+ +QL+A ++ LLL +A E+ I
Sbjct: 429 TALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAAGLLKI 482
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 61.6 bits (150), Expect = 2e-10
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G V A+GSD GS R PA++ +VG KP G +S L N + V G L RTV D
Sbjct: 175 GLVTA-AIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADA 233
Query: 76 ATVYNVIAGS 85
A + + +G+
Sbjct: 234 ALLLDAASGN 243
Score = 53.2 bits (128), Expect = 8e-08
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 252 LVTPTTLTTAPLVSQYIQLDNREQCSVQ-DYC--TQPANLAGCPAISVPINLSHEKLPVS 308
++ PTT P V + +L C T P N+ G P+I+VP + + LP+
Sbjct: 385 VLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIG 444
Query: 309 IQLMAPNFQDGLLLNLAHWLES 330
QLM P + LL++LA LE+
Sbjct: 445 AQLMGPANSEPLLISLAAQLEA 466
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 60.4 bits (147), Expect = 4e-10
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 20 TIALGSDTGGSTRNPASYCGVVGFKPTYGTV-------SRHGLIPLVNSMDVPGILTRTV 72
IA G+D GGS R PA CGV G +PT G V + M V G L RTV
Sbjct: 170 AIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPI--GAQLMSVQGPLARTV 227
Query: 73 EDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLV 111
D +A D RDP V P L+ + V
Sbjct: 228 ADLRLALAAMAAPDPRDPWWV-----PAPLEGPPRPKRV 261
Score = 36.5 bits (85), Expect = 0.018
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 287 NLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLL 322
G P +SVP L +PV +QL+A F++ L L
Sbjct: 413 PFMGLPGLSVPTGL-VGGVPVGVQLVAGRFREDLCL 447
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 49.4 bits (118), Expect = 1e-06
Identities = 47/168 (27%), Positives = 64/168 (38%), Gaps = 42/168 (25%)
Query: 23 LGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVI 82
L +T S R PAS G+ + P+ G +S G PL +MDV RT+ D V +VI
Sbjct: 179 LAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVI 238
Query: 83 AGSDHRDPTT------VQ--------KNISPVTLDQLDLSRLV-----IGVPEEY----- 118
DP T +Q + P + L GVP Y
Sbjct: 239 VAD---DPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADP 295
Query: 119 ---KSE------------HISPEVMDTWESVLKLMAKAGAQVKKVSLP 151
SE H P V+D WE+ + + AGA+V +V P
Sbjct: 296 DAGTSENPGIGGPTGQRIHTRPSVIDLWEAARRALEAAGAEVIEVDFP 343
>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain. This family does not
contain all known ATP-grasp domain members. This family
includes a diverse set of enzymes that possess
ATP-dependent carboxylate-amine ligase activity.
Length = 171
Score = 29.5 bits (67), Expect = 1.7
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 188 VNSTDQLLAETRKDAFGLVVKSRILA----GNYFLLKRNYENYFLKALKVRSLIAQDF 241
S ++L+ ++ + V+K+R G Y + + L +I ++F
Sbjct: 14 AESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEELGGGPVIVEEF 71
>gnl|CDD|233978 TIGR02701, shell_carb_anhy, carboxysome shell carbonic anhydrase.
This model describes a carboxysome shell protein that
proves to be a novel class, designated epsilon, of
carbonic anhydrase. It tends to be encoded near genes
for RuBisCo and for other carboxysome shell proteins
[Central intermediary metabolism, One-carbon
metabolism].
Length = 450
Score = 29.4 bits (66), Expect = 3.3
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 41 VGFKPTYGTVSRHGL-IPLVNSMD----VPGILTRTVEDCATVYNVIA 83
VG K G GL IP+ VPG R V V I
Sbjct: 382 VGIKIFTGLNVSRGLPIPVAVHFRYDGRVPGSRERAVVKARRVKAAIE 429
>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent;
Provisional.
Length = 332
Score = 28.1 bits (63), Expect = 6.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 235 SLIAQDFLRVWHSGVHALVT---------PTTLTTAPLVSQYIQLDNRE 274
SLI DF + +G +ALV+ TL++ P VS++I L R
Sbjct: 28 SLICHDFYP-YRAGQYALVSIRNSAETLRAYTLSSTPGVSEFITLTVRR 75
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 28.1 bits (63), Expect = 8.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 136 KLMAKAGAQVKKVSL 150
KLMA A A VK+VSL
Sbjct: 254 KLMAGAAATVKRVSL 268
>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family. This family
consists of Na+/bile acid co-transporters. These
transmembrane proteins function in the liver in the
uptake of bile acids from portal blood plasma a process
mediated by the co-transport of Na+. Also in the family
is ARC3 from S. cerevisiae, this is a putative
transmembrane protein involved in resistance to arsenic
compounds.
Length = 188
Score = 27.2 bits (61), Expect = 9.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 211 ILAG---NYFLLKRNYENYFLKALKVRSLIA 238
++AG YFL + +E L L SLI
Sbjct: 139 LIAGILTRYFLPREWFEQRILPVLPPISLIG 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,082,024
Number of extensions: 1607431
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 63
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)