RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10133
(342 letters)
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 331 bits (850), Expect = e-111
Identities = 126/323 (39%), Positives = 181/323 (56%), Gaps = 23/323 (7%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
ALGSDTGGS R PAS CGVVG+KPTYG VSR+GL+ +S+D G +T+TV D A +
Sbjct: 157 AALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILME 216
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+I+G D D TTV + + ++ + +S + VPEE I V + +E LKL+ +
Sbjct: 217 IISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLER 276
Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
GA+V++V +PH + S+ TY ++ E +SN+AR+ G+ YG R+ ++ +TR
Sbjct: 277 LGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEK--GLREMYMKTRN 334
Query: 201 DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTT 260
FG V+ RI+ G + L YE YF KA+KVR I+ + V A++TPT+ T
Sbjct: 335 VGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVT 393
Query: 261 A--------PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLM 312
A PL + Y+ D T PANLAG PAISVP S LPV +Q++
Sbjct: 394 AFKIGEIKDPL-TYYL----------MDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVI 441
Query: 313 APNFQDGLLLNLAHWLESQVEFN 335
F DG + +A +E +N
Sbjct: 442 GRRFADGKVFRIARAIEKNSPYN 464
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 331 bits (850), Expect = e-111
Identities = 125/325 (38%), Positives = 187/325 (57%), Gaps = 26/325 (8%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
++LGSDTGGS R PAS+CGV+G KPTYG VSR+GL+ +S+D G+ R ED A V
Sbjct: 162 VSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLE 221
Query: 81 VIAGSDHRDPTTVQKNISPVT--LDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
VI+G D +D T+ + + + + + ++ L IG+P+E+ + P+V + +E+ +K +
Sbjct: 222 VISGWDEKDSTSAKVPVPEWSEEVKK-EVKGLKIGLPKEFFEYELQPQVKEAFENFIKEL 280
Query: 139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
K G ++K+VSLPH + SI TY I+ E +SN+ARY G+ YG+R ++ A T
Sbjct: 281 EKEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRA-KEYKDIFEMYART 339
Query: 199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
R + FG VK RI+ G + L Y+ Y+LKA KVR LI DFL+ + V + +PTT
Sbjct: 340 RDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE-VDVIASPTTP 398
Query: 259 TTA---------PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSI 309
T P+ Y+ D T PANLAG PAIS+PI + LPV
Sbjct: 399 TLPFKFGERLENPI-EMYL----------SDILTVPANLAGLPAISIPIAWK-DGLPVGG 446
Query: 310 QLMAPNFQDGLLLNLAHWLESQVEF 334
QL+ ++ + LL +++ E + +
Sbjct: 447 QLIGKHWDETTLLQISYLWEQKFKH 471
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 330 bits (848), Expect = e-111
Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 26/325 (8%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
++LGSDTGGS R PA+YCGVVG KPTYG VSR GL+ +S+D G LTR V+D A V
Sbjct: 169 LSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLE 228
Query: 81 VIAGSDHRDPTTVQKNISPVT--LDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
I+G+D D T+ + T + + D+ L + +P+EY E ++ +V + ++ ++ +
Sbjct: 229 AISGADVNDSTSAPVDDVDFTSEIGK-DIKGLKVALPKEYLGEGVADDVKEAVQNAVETL 287
Query: 139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
GA V++VSLP+T+ I +Y ++ E +SN++R+ G+ YG+ +S ++L +
Sbjct: 288 KSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHS-KEAHSLEELYKMS 346
Query: 199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
R + FG VK RI G + L Y+ Y+ K+ KVR+LI DF +V+ +V PT
Sbjct: 347 RSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF-ENYDVVVGPTAP 405
Query: 259 TTA---------PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSI 309
TTA PL + Y D T P NLAG P ISVP S P+ +
Sbjct: 406 TTAFNLGEEIDDPL-TMYA----------NDLLTTPVNLAGLPGISVPCGQS-NGRPIGL 453
Query: 310 QLMAPNFQDGLLLNLAHWLESQVEF 334
Q + F + L +A+ E+Q
Sbjct: 454 QFIGKPFDEKTLYRVAYQYETQYNL 478
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 317 bits (815), Expect = e-106
Identities = 117/324 (36%), Positives = 158/324 (48%), Gaps = 29/324 (8%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALGSDTGGS R PA++CGV G KPTYG VSR GLI +S+D G + R+V D A + +
Sbjct: 156 LALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMD 215
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQL--DLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
AG D D T++ ++ P + L L L +GV E SP V E LK+
Sbjct: 216 AAAGPDPLDATSL--DLPPRFQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVF 272
Query: 139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
+ G V++VS P ++ Y IL E +SN+ARY G YG R + ++ T
Sbjct: 273 RELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAG--EEVEGMMEAT 330
Query: 199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
R FGL VK R+L G + L YE Y+ +A R + + ++ V L+ PTT
Sbjct: 331 RAL-FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTP 388
Query: 259 TTA--------PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQ 310
A PL + Y +D T ANL G PA+S P LPV +Q
Sbjct: 389 HPAFPFGARRDPL-AMYR----------EDLYTVGANLTGLPALSFPAGFE-GHLPVGLQ 436
Query: 311 LMAPNFQDGLLLNLAHWLESQVEF 334
L+AP +D LL A E
Sbjct: 437 LLAPWGEDERLLRAALAFEEATAR 460
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 304 bits (780), Expect = e-100
Identities = 87/325 (26%), Positives = 133/325 (40%), Gaps = 18/325 (5%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
A+G D GGS R PA++CGVVG KPT+G V G P+ ++D G +TRTV D A + +
Sbjct: 186 FAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLS 245
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQL--DLSRLVIGVPEEYKSEHIS-PEVMDTWESVLKL 137
VIAG D DP + L L D+ L IG+ E +S PEV D +
Sbjct: 246 VIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHS 305
Query: 138 MAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAE 197
+ + G V++V++P + ++++ A M G YG +
Sbjct: 306 LTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFA 363
Query: 198 ----TRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALV 253
DA VK L G++ + + KA + L + LV
Sbjct: 364 SRRIQHADALSETVKLVALTGHHG-ITTLGGASYGKARNLVPLARAAYDTALRQ-FDVLV 421
Query: 254 TPTTLTTAPLVSQYIQLDNREQCSVQDYC----TQPANLAGCPAISVPINLSHEKLPVSI 309
PT A + + +R + T P ++ G P++SVP L LPV +
Sbjct: 422 MPTLPYVASELPA--KDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLV-NGLPVGM 478
Query: 310 QLMAPNFQDGLLLNLAHWLESQVEF 334
+ +F D +L + E
Sbjct: 479 MITGRHFDDATVLRVGRAFEKLRGA 503
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 295 bits (758), Expect = 4e-98
Identities = 66/320 (20%), Positives = 113/320 (35%), Gaps = 50/320 (15%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDC 75
G +P +ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED
Sbjct: 142 GMIP-LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDL 200
Query: 76 ATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVL 135
A + G IGV + + + P ++ +
Sbjct: 201 ARGLLAMTGRSEFSGIV-------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAI 247
Query: 136 KLMAKAGAQVKKVSLPHTQSSIV-TYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQL 194
K +AGA V+ + LP + I+ E +A
Sbjct: 248 KAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFS----------------- 290
Query: 195 LAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVT 254
D +++ L L + +A ++ ++ V+ GV L+T
Sbjct: 291 ---EHHDEIAPMLR-ASLDATVGL----TPKEYDEARRIGRRGRRELGEVFE-GVDVLLT 341
Query: 255 PTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAP 314
+ TAP + D R + L G P ++VP+ L LP+ +Q++A
Sbjct: 342 YSAPGTAPAKALASTGDPR--------YNRLWTLMGNPCVNVPV-LKVGGLPIGVQVIAR 392
Query: 315 NFQDGLLLNLAHWLESQVEF 334
D L A +LE +
Sbjct: 393 FGNDAHALATAWFLEDALAK 412
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 291 bits (747), Expect = 3e-96
Identities = 84/316 (26%), Positives = 133/316 (42%), Gaps = 50/316 (15%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
+LG+DTGGS R PA + GVVGFKP+YG VS G +PL S D G LTR+V D + +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 82 IAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKA 141
+AG + V GVP ++ + EV + +L+ +
Sbjct: 223 LAGESIPLE---------------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPAL 267
Query: 142 GAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKD 201
A+V++VSLP EV + + RY + + +
Sbjct: 268 RAEVREVSLPLEGVY----------EVYTRLVRYEAARIHEKA-----------LKEHPE 306
Query: 202 AFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTA 261
F V+ +LAG E + A+ R + + ++ GV AL+ P A
Sbjct: 307 GFSPQVREALLAGLALT-----EKDYRDAVAEREALRLELVKAL-RGVDALLLPVQPLPA 360
Query: 262 PLVSQYIQLDNREQCSVQDY-----CTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNF 316
P + + E T P +L G P +++P E +PV +Q++
Sbjct: 361 PPLGT--EEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKV-EGMPVGLQVVGAYG 417
Query: 317 QDGLLLNLAHWLESQV 332
+DG +L L WLE+++
Sbjct: 418 EDGKVLALGGWLEARL 433
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 269 bits (691), Expect = 5e-87
Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 27/320 (8%)
Query: 20 TIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVY 79
++A+G++T GS PA+ GVVG KPT G VSR G+IP+ S D G + R+V D A V
Sbjct: 179 SVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVL 238
Query: 80 NVIAGSDHRDPTTVQKNISPVT-----LDQLDLSRLVIGVPEEYKSEHISPEVMDTWESV 134
IAG D DP T V LD L IG+ + ++ + E
Sbjct: 239 TAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKY--RGMPPLIEQA 296
Query: 135 LKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPS-VNSTDQ 193
+ +AGA V V LP+ + L E + + RY + + + + +Q
Sbjct: 297 ATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQ 356
Query: 194 LLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALK-VRSLIAQ---DFLRVWHSGV 249
++ FG + L + +++A R L D H +
Sbjct: 357 AHSKQELGLFG-----QELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAH-QL 410
Query: 250 HALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSI 309
ALV PTT P+ + + Y A +AG P+++VP+ LPV +
Sbjct: 411 DALVAPTTGVAWPI------RSEGDDFPGESY--SAAAVAGYPSLTVPMGQIDG-LPVGL 461
Query: 310 QLMAPNFQDGLLLNLAHWLE 329
M + + L+ +A+ E
Sbjct: 462 LFMGTAWSEPKLIEMAYAYE 481
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 230 bits (588), Expect = 7e-72
Identities = 77/333 (23%), Positives = 124/333 (37%), Gaps = 41/333 (12%)
Query: 16 GPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNS---MDVPGILTRTV 72
P +A G+D G+ R PAS CGVVG KPT G +S L+ ++ G+ R+V
Sbjct: 161 ALSP-VAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV 219
Query: 73 EDCATVYNVIAGSDHRDPTTVQKNISPVTLDQL--DLSRLVIGVPEEYKSEH--ISPEVM 128
D A + +V++G D P + + L +GV + PE
Sbjct: 220 RDIAALLDVVSGHRPGDTFCAPTASRPY-AQGISENPGSLRVGVLTHNPVGDFALDPECA 278
Query: 129 DTWESVLKLMAKAGAQVKKVSLP--HTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTP 186
+A G V +S + YS + +A + R G G +T
Sbjct: 279 AAARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERN-GELIGRPLTE 337
Query: 187 SVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWH 246
+ + R F + A R W
Sbjct: 338 D-----------DVEWTSWEMVKRADQVTGRA--------FAACVDELRYYAGKVERWWE 378
Query: 247 SGVHALVTPTTLTTAPLVSQY-----IQLDNREQCSVQDYC-----TQPANLAGCPAISV 296
+G L+ PT P + + L+ R+ + T P N++G PAIS+
Sbjct: 379 AGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISL 438
Query: 297 PINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLE 329
PI +S + +P+ +Q++A ++ LLL +A LE
Sbjct: 439 PIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLE 471
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 166 bits (421), Expect = 7e-47
Identities = 66/352 (18%), Positives = 109/352 (30%), Gaps = 57/352 (16%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLV----NSMDVPGILTRTVEDCA 76
+ LG+D GGS R P+++CG+ G KPT +S+ GL V G + R VE A
Sbjct: 226 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLA 285
Query: 77 TVYNVIAGSDH--RDPTTVQKNISPVTLDQL---DLSRLVIGVPEEYKSEHISPEVMDTW 131
+ DPT P+ + L +G E SP +
Sbjct: 286 LCLKALLCEHLFTLDPTVP-----PLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRAL 340
Query: 132 ESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNST 191
+ + AG + + ++ + + + F G V P +
Sbjct: 341 IETKQRLEAAGHTLIPFLPNNIPYAL--EVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDL 398
Query: 192 DQL--LAETRKDAFGLVVK--SRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHS 247
+ L K L++K LA ++ K + Q + W +
Sbjct: 399 ILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKA 458
Query: 248 -GVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEK-- 304
+ L+TP L + T N PA VP+ +
Sbjct: 459 MNLDVLLTPMLGPALDLNTPGRATGA-------VSYTMLYNCLDFPAGVVPVTTVTAEDD 511
Query: 305 ---------------------------LPVSIQLMAPNFQDGLLLNLAHWLE 329
LPV++Q +A +Q+ L L +E
Sbjct: 512 AQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVE 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 2e-13
Identities = 75/372 (20%), Positives = 122/372 (32%), Gaps = 111/372 (29%)
Query: 2 SLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFK---PTYGTVSRHGLIPL 58
L F GQG N Y F+ Y T + L
Sbjct: 155 QLVAI-----FGGQG----------------NTDDY-----FEELRDLYQT-YHVLVGDL 187
Query: 59 VNSM-DVPGILTRTVEDCATVY----NVIAGSDHRDPTTVQKNI--SPVTLDQLDLSRL- 110
+ + L RT D V+ N++ ++ T + + P++ + + +L
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 111 -------VIGV-PEEYKSE------HISPEVM-------DTWESVLKLMAKA-------G 142
++G P E +S H V D+WES + KA G
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 143 AQVKKVSLPHT--QSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
+ + P+T SI+ S+ N V S M + L V VN T+ L ++
Sbjct: 308 VRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQ 365
Query: 201 DAFGLV--VKSRILAGN----YFLLKRNYENYFLKALKVRSLIAQD-------------- 240
LV K+ +++G Y L N L+ K S + Q
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGL------NLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 241 FLRV---WHSGVHALVTPTTLTTAPLVSQYIQLDNRE-QCSV------QDYCTQPANLAG 290
FL V +HS H LV + L LV + + ++ Q V D +++
Sbjct: 420 FLPVASPFHS--HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 291 --CPAI-SVPIN 299
I +P+
Sbjct: 478 RIVDCIIRLPVK 489
Score = 39.3 bits (91), Expect = 0.002
Identities = 53/267 (19%), Positives = 78/267 (29%), Gaps = 90/267 (33%)
Query: 99 PVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIV 158
P+TL L V+ VP + + E K LP
Sbjct: 8 PLTLSHGSL-EHVLLVPT---ASFFIASQL--QEQFNK------------ILPE-----P 44
Query: 159 TYSILNQCEVASN---MARYTGLFYGHRVTPS-VNSTDQLLAETRKDAFGLVVKSRILAG 214
T E + + ++ G + V PS V DQ+L F ++ L G
Sbjct: 45 TEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQVL-NLCLTEF----ENCYLEG 98
Query: 215 N--------------YFLLKRNY--ENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
N L+K +NY R + + F + +S AL
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYI----TARIMAKRPFDKKSNS---ALFRAVGE 151
Query: 259 TTAPLVSQ---------YIQ-LDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKL--- 305
A LV+ Y + L R+ Y T + I S E L
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEEL--RDL-----YQTYH------VLVGDLIKFSAETLSEL 198
Query: 306 ---PVSIQLMAPNFQDGLLLNLAHWLE 329
+ + F GL N+ WLE
Sbjct: 199 IRTTLDAE---KVFTQGL--NILEWLE 220
Score = 32.3 bits (73), Expect = 0.26
Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 75/177 (42%)
Query: 116 EEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTY--SILNQCEVASNMA 173
+ YK+ S D W +A H + TY SIL+ V +N
Sbjct: 1634 DLYKT---SKAAQDVWN-------RADN--------HFKD---TYGFSILD--IVINNPV 1670
Query: 174 RYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNY-FLLKRNYENYFLKALK 232
T F G K + + NY ++ + LK K
Sbjct: 1671 NLTIHFGGE-------------------------KGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 233 VRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLA 289
+ I + L++ T Q+ TQPA
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSAT---------QF---------------TQPALTL 1738
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 6e-06
Identities = 36/271 (13%), Positives = 77/271 (28%), Gaps = 84/271 (30%)
Query: 52 RHGLIPL--------VNSMDVPG----ILTRTVEDCATVYNVIAGSDHRDPTTVQKNISP 99
+ L+ L N+ ++ + TR V + + + ++ +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL-SCKILLTTR---F-KQVTDFL-SAATTTHISLDHHSMT 297
Query: 100 VTLDQ-LDLSRLVIGV-----PEEYKSEHISP-----------EVMDTWESVLKLMAKAG 142
+T D+ L + P E + +P + + TW++ +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 143 AQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTP-SVNSTDQLLA----- 196
+ + S LN E A + L V P S + LL+
Sbjct: 356 TTIIESS-------------LNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFD 398
Query: 197 ETRKDAFGLVVKSRILAGNYFLLKRNYEN--YFLKALKVRSLIAQDFLRVWHSGVHALVT 254
+ D +V K Y L+++ + + ++ + + + H
Sbjct: 399 VIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------- 446
Query: 255 PTTLTTAPLVSQYIQLDNREQCSVQDYCTQP 285
+V Y N + D P
Sbjct: 447 ------RSIVDHY----NIPKTFDSDDLIPP 467
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.061
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 303 EKLPVSIQLMAPNFQDGLLLNLAHWLESQVE 333
+KL S++L A + L + + +E
Sbjct: 23 KKLQASLKLYADDSAPALAIK------ATME 47
>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease,
nucle flipping, base extrusion, hydrolase-DNA complex;
HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A*
Length = 305
Score = 31.8 bits (71), Expect = 0.29
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 92 TVQKNISPVTLDQLDLSRLVIGVPEEYKS--EHISPEVMDTWESVLKLMAKAGAQVKKVS 149
T+ + S T++ L + +V+ E K+ + V+ T+E +L+ + + VS
Sbjct: 208 TLDDSFSEETINILYEANVVVVTTVENKNFKYKNNNRVL-TFEDMLQSAMELSRKWNNVS 266
Query: 150 LPHTQSSIVTYSILNQCEVASN 171
++ + SIL Q E S+
Sbjct: 267 YTDSEKEEIQQSILKQIEKYSD 288
>3bnk_A Flavoredoxin; protein-FMN complex, electron transport; HET: FMN;
2.05A {Methanosarcina acetivorans}
Length = 196
Score = 27.3 bits (61), Expect = 5.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 17 PVPTIALGSDTGGSTRN--PASYCGVVGFKP 45
P+P LG++ G N + V P
Sbjct: 15 PMPVTLLGANVKG-KANLMALGWVSRVNANP 44
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction,
mutation, replication, hydrolase; 2.10A {Escherichia
coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Length = 404
Score = 27.8 bits (61), Expect = 6.1
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 92 TVQKNISPVTLDQLDLSRLVIGVPEEYKSEH---ISPEVMD 129
T+Q+ +S ++ S + + VP ++ + E+M
Sbjct: 348 TLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMT 388
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 27.1 bits (61), Expect = 10.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 136 KLMAKAGAQVKKVSL 150
+ A+AGA +KK L
Sbjct: 219 AIGAQAGAALKKCVL 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,039,485
Number of extensions: 290212
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 21
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)