RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10133
(342 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 271 bits (694), Expect = 3e-88
Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 6/315 (1%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
++LGSDTGGS R PA+YCGVVG KPTYG VSR GL+ +S+D G LTR V+D A V
Sbjct: 169 LSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLE 228
Query: 81 VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
I+G+D D T+ + T + D+ L + +P+EY E ++ +V + ++ ++ +
Sbjct: 229 AISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLK 288
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
GA V++VSLP+T+ I +Y ++ E +SN++R+ G+ YG+ + +S ++L +R
Sbjct: 289 SLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYH-SKEAHSLEELYKMSR 347
Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLT 259
+ FG VK RI G + L Y+ Y+ K+ KVR+LI DF +V+ +V PT T
Sbjct: 348 SEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE-NYDVVVGPTAPT 406
Query: 260 TAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
TA + + ++D+ D T P NLAG P ISVP S P+ +Q + F +
Sbjct: 407 TAFNLGE--EIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEK 463
Query: 320 LLLNLAHWLESQVEF 334
L +A+ E+Q
Sbjct: 464 TLYRVAYQYETQYNL 478
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 253 bits (647), Expect = 2e-81
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 7/315 (2%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
ALGSDTGGS R PAS CGVVG+KPTYG VSR+GL+ +S+D G +T+TV D A +
Sbjct: 156 AALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILME 215
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+I+G D D TTV + + ++ + +S + VPEE I V + +E LKL+ +
Sbjct: 216 IISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLER 275
Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
GA+V++V +PH + S+ TY ++ E +SN+AR+ G+ YG R+ ++ +TR
Sbjct: 276 LGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEK--GLREMYMKTRN 333
Query: 201 DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTT 260
FG V+ RI+ G + L YE YF KA+KVR I+ + V A++TPT+ T
Sbjct: 334 VGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS-QYDAILTPTSPVT 392
Query: 261 APLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGL 320
A + ++ + + D T PANLAG PAISVP S+ LPV +Q++ F DG
Sbjct: 393 AFKIG---EIKDPLTYYLMDIFTIPANLAGLPAISVPFGFSN-NLPVGVQVIGRRFADGK 448
Query: 321 LLNLAHWLESQVEFN 335
+ +A +E +N
Sbjct: 449 VFRIARAIEKNSPYN 463
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 115 bits (288), Expect = 2e-29
Identities = 80/314 (25%), Positives = 121/314 (38%), Gaps = 17/314 (5%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+A+G++T GS PA+ GVVG KPT G VSR G+IP+ S D G + R+V D A V
Sbjct: 176 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 235
Query: 81 VIAGSDHRDPTTVQKNISPV-----TLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVL 135
IAG D DP T V LD L IG+ + ++ + E
Sbjct: 236 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKY--RGMPPLIEQAA 293
Query: 136 KLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLL 195
+ +AGA V V LP+ + L E + + RY + +
Sbjct: 294 TELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQA 353
Query: 196 AETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTP 255
++ L Y A ++ D H + ALV P
Sbjct: 354 HSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAH-QLDALVAP 412
Query: 256 TTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPN 315
TT P+ S+ A +AG P+++VP+ + LPV + M
Sbjct: 413 TTGVAWPIRSEGDDFPGE--------SYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTA 463
Query: 316 FQDGLLLNLAHWLE 329
+ + L+ +A+ E
Sbjct: 464 WSEPKLIEMAYAYE 477
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 114 bits (286), Expect = 6e-29
Identities = 58/347 (16%), Positives = 102/347 (29%), Gaps = 53/347 (15%)
Query: 24 GSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPL----VNSMDVPGILTRTVEDCATVY 79
G+D GGS R P+++CG+ G KPT +S+ GL G + R VE A
Sbjct: 199 GTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCL 258
Query: 80 NVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
+ + L +G E SP + + +
Sbjct: 259 KALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLE 318
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
AG + + +L+ + S+ R + L+ R
Sbjct: 319 AAGHTLIPFLPNNIPY---ALEVLSAGGLFSDGGRSFLQNFKGDFVDP--CLGDLILILR 373
Query: 200 KDAFGLVVKSRIL-------AGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHS-GVHA 251
++ + S +L A ++ K + Q + W + +
Sbjct: 374 LPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDV 433
Query: 252 LVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEK------- 304
L+TP L + + + T N PA VP+ +
Sbjct: 434 LLTPMLGPALDL-------NTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMEL 486
Query: 305 ----------------------LPVSIQLMAPNFQDGLLLNLAHWLE 329
LPV++Q +A +Q+ L L +E
Sbjct: 487 YKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVE 533
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 94.4 bits (233), Expect = 3e-22
Identities = 60/309 (19%), Positives = 101/309 (32%), Gaps = 47/309 (15%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEFSGIV-------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
AGA V+ + LP ++ R + D++ R
Sbjct: 253 AGASVQAIDLPEAVH---EAWRIHPIIQDFEAHRALAWEFSEH-------HDEIAPMLRA 302
Query: 201 DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTT 260
V + + R + + GV L+T + T
Sbjct: 303 SLDATVGLTPKEYDEARRIGRRGRRELGEVFE---------------GVDVLLTYSAPGT 347
Query: 261 APLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGL 320
AP + D + L G P ++VP+ L LP+ +Q++A D
Sbjct: 348 APAKALASTGD--------PRYNRLWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAH 398
Query: 321 LLNLAHWLE 329
L A +LE
Sbjct: 399 ALATAWFLE 407
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 27.5 bits (60), Expect = 2.6
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 120 SEHISPEVMDTWESVLKLMAKAGAQVKK 147
+ I +TWE + A A K+
Sbjct: 290 PDFIEQAGFETWEGIKVGARAAAAAAKE 317
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,213,363
Number of extensions: 53222
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 7
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)