BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10135
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 3 RIKTKDKHDRATAEQVMDPRTRMILFKLISRGMVSEVNGCISTGKEANVYHASPGANYKI 62
RIK KD +R +V+D RT L+KL ++G ++ + G ISTGKEANV++A + K
Sbjct: 15 RIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKP 74
Query: 63 ENLELEKEFAIKIFKTSILVFKDRDKYVNGEFRFRHGYCKKNPRKMVRTWAEKEMRNLTR 122
+ A+KI++ F D+Y+ G+ RF + +P++ V W EKE RNL R
Sbjct: 75 VAM------AVKIYRIETSEFDKMDEYLYGDERFDM--RRISPKEKVFIWTEKEFRNLER 126
Query: 123 MYSEGLNVPKPILLKSHVLLMTFIGEDGWPAAKLKDT--PLTESGACKLYRECVVMMWRL 180
G++VP+P +VLLM FIGED PA L + L E ++ + V + RL
Sbjct: 127 AKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRL 186
Query: 181 YNKCHLVHADLSEYNMLVHKATLFIIDVAQSVEHDHPHALQFLRKDCDNVTVFVILNPVS 240
Y + LVHADLSEYN++ + ++ ID+ Q+V HP A +L +D N+ F V
Sbjct: 187 YQEAELVHADLSEYNIM-YIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSKYGVK 245
Query: 241 DDDEKIFKK 249
D E++ K+
Sbjct: 246 ADFEEMLKE 254
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 132/249 (53%), Gaps = 11/249 (4%)
Query: 3 RIKTKDKHDRATAEQVMDPRTRMILFKLISRGMVSEVNGCISTGKEANVYHASPGANYKI 62
RIK KD +R +V+D RT L+KL ++G ++ G ISTGKEANV++A + K
Sbjct: 15 RIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAXGGVISTGKEANVFYADGVFDGK- 73
Query: 63 ENLELEKEFAIKIFKTSILVFKDRDKYVNGEFRFRHGYCKKNPRKMVRTWAEKEMRNLTR 122
A+KI++ F D+Y+ G+ RF + +P++ V W EKE RNL R
Sbjct: 74 -----PVAXAVKIYRIETSEFDKXDEYLYGDERFDX--RRISPKEKVFIWTEKEFRNLER 126
Query: 123 MYSEGLNVPKPILLKSHVLLMTFIGEDGWPAAKLKDT--PLTESGACKLYRECVVMMWRL 180
G++VP+P +VLL FIGED PA L + L E ++ + V + RL
Sbjct: 127 AKEAGVSVPQPYTYXKNVLLXEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRL 186
Query: 181 YNKCHLVHADLSEYNMLVHKATLFIIDVAQSVEHDHPHALQFLRKDCDNVTVFVILNPVS 240
Y + LVHADLSEYN + + ++ ID Q+V HP A +L +D N+ F V
Sbjct: 187 YQEAELVHADLSEYN-IXYIDKVYFIDXGQAVTLRHPXAESYLERDVRNIIRFFSKYGVK 245
Query: 241 DDDEKIFKK 249
D E+ K+
Sbjct: 246 ADFEEXLKE 254
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 108 MVRTWAEKEMRNLTRMYSEGLNVPKPILLKSHVLLMTFIGEDGWPAAKLKDTPLTESGAC 167
+ R A KE + +Y EG VP+PI H ++M+ + D P ++ P S
Sbjct: 155 LSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLV--DALPMRQVSSVPDPAS--- 209
Query: 168 KLYRECVVMMWRLYNKCHLVHADLSEYNMLVHKA-----------TLFIIDVAQSVEHDH 216
LY + + ++ RL K L+H D +E+N+L+ + T IID Q V DH
Sbjct: 210 -LYADLIALILRL-AKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIDFPQMVSMDH 267
Query: 217 PHALQFLRKDCDNVTVF 233
P+A + +D + F
Sbjct: 268 PNAEMYFDRDVQCIKRF 284
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 108 MVRTWAEKEMRNLTRMYSEGLNVPKPILLKSHVLLMTFIGEDGWPAAKLKDTPLTESGAC 167
+ R A KE + +Y EG VP+PI H ++M+ + D P ++ P S
Sbjct: 155 LSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLV--DALPMRQVSSVPDPAS--- 209
Query: 168 KLYRECVVMMWRLYNKCHLVHADLSEYNMLVHKA-----------TLFIIDVAQSVEHDH 216
LY + + ++ RL K L+H D +E+N+L+ + T II Q V DH
Sbjct: 210 -LYADLIALILRL-AKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDH 267
Query: 217 PHALQFLRKDCDNVTVF 233
P+A + +D + F
Sbjct: 268 PNAEMYFDRDVQCIKRF 284
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 41/214 (19%)
Query: 27 LFKLISRGMVSEVNGCISTGKEANVYHASPGANYKIENLELEKEFAIKIFKTSILVFKD- 85
L +L+ G V + + GKE+ V++ E E +K K FK
Sbjct: 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYS---------EKFGECVVKFHKVGHTSFKKV 132
Query: 86 RDKYVNGEFRFRHGYCKKNPRKMVRTWAEKEMRNLTRMYSEGLNVPKPILLKSHVLLMTF 145
++K G+ F +R+ A E R L ++ +GL VPK + + +LM
Sbjct: 133 KEKRDYGDLHF--------SVLAIRS-ARNEFRALQKL--QGLAVPKVYAWEGNAVLMEL 181
Query: 146 IGEDGWPAAKLK------DTPLTESGACKLYRECVVMMWRLYNKCHLVHADLSEYNMLVH 199
I +++ D L E K Y +V H DLS+YN+LV
Sbjct: 182 IDAKELYRVRVENPDEVLDMILEE--VAKFYHRGIV------------HGDLSQYNVLVS 227
Query: 200 KATLFIIDVAQSVEHDHPHALQFLRKDCDNVTVF 233
+ ++IID QSVE + L +D N+ +
Sbjct: 228 EEGIWIIDFPQSVEVGEEGWREILERDVRNIITY 261
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 27 LFKLISRGMVSEVNGCISTGKEANVYHASPGANYKIENLELEKEFAIKIFKTSILVFKD- 85
L +L+ G V + GKE+ V++ E E +K K FK
Sbjct: 82 LHRLVRSGKVDAIGKLXGEGKESAVFNCYS---------EKFGECVVKFHKVGHTSFKKV 132
Query: 86 RDKYVNGEFRFRHGYCKKNPRKMVRTWAEKEMRNLTRMYSEGLNVPKPILLKSHVLLMTF 145
++K G+ F +R+ A E R L ++ +GL VPK + + +L
Sbjct: 133 KEKRDYGDLHF--------SVLAIRS-ARNEFRALQKL--QGLAVPKVYAWEGNAVLXEL 181
Query: 146 IGEDGWPAAKLK------DTPLTESGACKLYRECVVMMWRLYNKCHLVHADLSEYNMLVH 199
I +++ D L E K Y +V H DLS+YN+LV
Sbjct: 182 IDAKELYRVRVENPDEVLDXILEE--VAKFYHRGIV------------HGDLSQYNVLVS 227
Query: 200 KATLFIIDVAQSVEHDHPHALQFLRKDCDNVTVF 233
+ ++IID QSVE + L +D N+ +
Sbjct: 228 EEGIWIIDFPQSVEVGEEGWREILERDVRNIITY 261
>pdb|2CHC|A Chain A, Structure Of Rv3472(D26n), A Function Unknown Protein From
Mycobacterium Tuberculosis
pdb|2CHC|B Chain B, Structure Of Rv3472(D26n), A Function Unknown Protein From
Mycobacterium Tuberculosis
pdb|2CHC|C Chain C, Structure Of Rv3472(D26n), A Function Unknown Protein From
Mycobacterium Tuberculosis
Length = 170
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 12 RATAEQVMDPRTRMILFKLISRGMVSEVNGCISTGKEANVYHASPGANYKI 62
R + D R++ + ++ ++ EV+G ++TG+ A+V + A YKI
Sbjct: 55 RPALREYADAHARVVRGRHLTTDLLYEVDGDVATGRSASVVTLATAAGYKI 105
>pdb|2ASS|C Chain C, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|C Chain C, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 69
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 87 DKYVNGEFRFRHGYCKKNPRKMV---RTWAEKEMRNLTRMYSEG-----LNVPKPILL 136
DKY + EF +RH K+ K+V +E E RNL S+G ++ P+P +L
Sbjct: 6 DKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHIL 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,690,707
Number of Sequences: 62578
Number of extensions: 393233
Number of successful extensions: 980
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 14
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)