BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10137
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
H + P CE C + I + + C +C H++C + +C
Sbjct: 210 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 264
Query: 133 HGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
H +V+ L+ L + K P +VD I IE RG+ +EG+YR SG I+++K D
Sbjct: 265 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 324
Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
+G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A + + +++ TL
Sbjct: 325 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 384
Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
LK LP + + + L+ HL RV HE+ N M +L IVF P ++R A AL+D
Sbjct: 385 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALND 444
Query: 308 ISRQTLCIELIISEQ 322
I Q L +EL+I +
Sbjct: 445 IRYQRLVVELLIKNE 459
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A + +
Sbjct: 316 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 375
Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
+++ TL LK LP + + + L+ HL RV HE+ N M +L IVF L
Sbjct: 376 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 430
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 316 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 375
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++++ TL LK LP + + + L+ HL RV HE+ N M +L
Sbjct: 376 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 422
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 132/257 (51%), Gaps = 14/257 (5%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC--GLARSSAA 130
H + P CE C + I + + C +C H++C + +C L R
Sbjct: 213 HNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIK-- 270
Query: 131 RSHGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTK 189
+V+ L+ L + + + P +VD I IE RG+ +EG+YR SG I+++K
Sbjct: 271 -----KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMA 325
Query: 190 ID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVST 245
D +G+ ++ VY ++I+ LKL+ R++P P++T++ Y +F+ AA ++ ++R+
Sbjct: 326 FDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEA 385
Query: 246 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL 305
+ +L LP +++ + L+ HL +V +E+ N M +L IVF P ++R L
Sbjct: 386 VHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTL 445
Query: 306 SDISRQTLCIELIISEQ 322
D+ Q L ++++I +
Sbjct: 446 HDMRYQKLIVQILIENE 462
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
I+++K D +G+ ++ VY ++I+ LKL+ R++P P++T++ Y +F+ AA ++
Sbjct: 319 IEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISN 378
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
++R+ + +L LP +++ + L+ HL +V +E+ N M +L IVF L
Sbjct: 379 ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 433
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
I+++K D +G+ ++ VY ++I+ LKL+ R++P P++T++ Y +F+ AA ++
Sbjct: 319 IEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISN 378
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++R+ + +L LP +++ + L+ HL +V +E+ N M +L
Sbjct: 379 ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENL 425
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 130 ARSHGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT 188
H +V+ L+ L + K P +VD I IE RG+ +EG+YR SG I+++K
Sbjct: 1 GSKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKM 60
Query: 189 KID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVS 244
D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A + + +++
Sbjct: 61 AFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLE 120
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
TL LK LP + + + L+ HL RV HE+ N M +L IVF P ++R A A
Sbjct: 121 TLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAA 180
Query: 305 LSDISRQTLCIELIISEQ 322
L+DI Q L +EL+I +
Sbjct: 181 LNDIRYQRLVVELLIKNE 198
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A + +
Sbjct: 55 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 114
Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
+++ TL LK LP + + + L+ HL RV HE+ N M +L IVF L
Sbjct: 115 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 169
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 55 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 114
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++++ TL LK LP + + + L+ HL RV HE+ N M +L
Sbjct: 115 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 11/197 (5%)
Query: 134 GHRVFGVPLSQ-LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
G RVFG L + L +S +VP ++ IE GI +GIYR SG+ S IQ L+ + D
Sbjct: 18 GERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDS 76
Query: 193 GKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA--ADLTEDRVSTLFS 248
+P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A A E+R+ +
Sbjct: 77 EHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD 136
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH-----FPAQD 303
+++ LP P++ +E L+ HL+ +A + M +LAIV+AP +LR + F
Sbjct: 137 VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTA 196
Query: 304 ALSDISRQTLCIELIIS 320
A ++ Q++ +E I++
Sbjct: 197 AFMEVRIQSVVVEFILN 213
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 442
+ S IQ L+ + D +P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A
Sbjct: 63 VASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAV 122
Query: 443 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
A E+R+ + +++ LP P++ +E L+ HL+ +A + M +LAIV+A L
Sbjct: 123 SAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNL 181
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 515 AIHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA 572
+ S IQ L+ + D +P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A
Sbjct: 62 GVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDA 121
Query: 573 --ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
A E+R+ + +++ LP P++ +E L+ HL+ +A + M +L
Sbjct: 122 VSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 11/211 (5%)
Query: 117 RIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRK 176
+ + E GL + SH H+V + VP V + I +E RG+ +GIYR
Sbjct: 7 KTLQEKGLIKDQIFGSHLHKV-------CERENSTVPWFVKQCIEAVEKRGLDVDGIYRV 59
Query: 177 SGIHSKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 235
SG + IQ+L+ ++ E KL + + +H++ LK+F RE+PEPL + ++E+F+ A
Sbjct: 60 SGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEA 119
Query: 236 ADLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
++ R+ + S+++ LP PN D M+ L HL ++ N M+ SL IVF P +
Sbjct: 120 IKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTL 179
Query: 294 LRQRHFPAQDALSDISRQTLCIELIISEQLK 324
LR + A+ + + + EL++SE K
Sbjct: 180 LRAENETGNMAIHMVYQNQIA-ELMLSEYSK 209
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 21/153 (13%)
Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 448
QE K +D+ + + +H++ LK+F RE+PEPL + ++E+F+ A ++
Sbjct: 75 QEEKLNLDDSQWED-------IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508
R+ + S+++ LP PN D M+ L HL ++ N M+ SL IVF L +E
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENE-- 185
Query: 509 LPESELAIHSKIQELKTKIDEGKLPELELEVYS 541
+AIH + + ++ EL L YS
Sbjct: 186 --TGNMAIHM--------VYQNQIAELMLSEYS 208
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 578
QE K +D+ + + +H++ LK+F RE+PEPL + ++E+F+ A ++
Sbjct: 75 QEEKLNLDDSQWED-------IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127
Query: 579 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
R+ + S+++ LP PN D M+ L HL ++ N M+ SL
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FGVPL+ + + + +P ++R I IE G+ TEGIYR SG S+++ L+ + D+ +
Sbjct: 54 FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 113
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPK 255
L + ++V+ +A +K F E+P+PL+ + + + A + E ++ L +LK PK
Sbjct: 114 LAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPK 173
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCI 315
N ++ + +I HL +V+++ + N MT +L+I F P ++R F DAL+ I
Sbjct: 174 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP-DFSTMDALTATRTYQTII 232
Query: 316 ELIISE 321
EL I +
Sbjct: 233 ELFIQQ 238
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
S+++ L+ + D+ +L + ++V+ +A +K F E+P+PL+ + + + A +
Sbjct: 97 SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
E ++ L +LK PK N ++ + +I HL +V+++ + N MT +L+I F L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTL 211
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
S+++ L+ + D+ +L + ++V+ +A +K F E+P+PL+ + + + A +
Sbjct: 97 SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E ++ L +LK PK N ++ + +I HL +V+++ + N MT +L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL-KTKIDEGKLPELELEV---YSVHILA 209
S++ + I +E RGI +G+YR G++S++Q+L +D E E E+ + + +
Sbjct: 39 SIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT 98
Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPKPNFDLMERLIFH 267
+ LK +LR +P PL+ +++ F++AA L E RVS + S++ LP+ N ++ L+ H
Sbjct: 99 SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNH 158
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII 319
LA+VA + + N MT +L +VF P +LR + A+ DI Q + IE++I
Sbjct: 159 LAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVA-AIMDIKFQNIVIEILI 209
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 386 IHSKIQEL-KTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLR 441
++S++Q+L +D E E E+ + + + + LK +LR +P PL+ +++ F++
Sbjct: 64 VNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK 123
Query: 442 AADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE 499
AA L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L +VF
Sbjct: 124 AAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPT 183
Query: 500 L 500
L
Sbjct: 184 L 184
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 514 LAIHSKIQEL-KTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEF 569
+ ++S++Q+L +D E E E+ + + + + LK +LR +P PL+ +++ F
Sbjct: 62 VGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121
Query: 570 LRAADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++AA L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L
Sbjct: 122 IKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 176
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 145 LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYS 204
+S + +PS+V + IE RG+ G+YR SG ++ELK K K L +V
Sbjct: 10 VSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDD 69
Query: 205 VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLME 262
+H + +LLK FLR + EPLLTF F+ AA++T ++ ++ ++ + LP+ N D +
Sbjct: 70 IHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLA 129
Query: 263 RLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD---ALSDISRQTLCIELII 319
L+ HL RVA +M +LA VF P I+ P D L DI RQ +E ++
Sbjct: 130 FLMIHLQRVA-QSPHTKMDVANLAKVFGPTIVAHA-VPNPDPVTMLQDIKRQPKVVERLL 187
Query: 320 S 320
S
Sbjct: 188 S 188
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 447
++ELK K K L +V +H + +LLK FLR + EPLLTF F+ AA++T +
Sbjct: 48 VKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDED 107
Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ ++ ++ + LP+ N D + L+ HL RVA +M +LA VF
Sbjct: 108 NSIAAMYQAVGELPQANRDTLAFLMIHLQRVA-QSPHTKMDVANLAKVFG 156
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 577
++ELK K K L +V +H + +LLK FLR + EPLLTF F+ AA++T +
Sbjct: 48 VKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDED 107
Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVA 609
+ ++ ++ + LP+ N D + L+ HL RVA
Sbjct: 108 NSIAAMYQAVGELPQANRDTLAFLMIHLQRVA 139
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + + +P ++ + ++ + TEGI+R+S ++E++ K + G
Sbjct: 45 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 103
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+T
Sbjct: 104 LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 162
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
LP+ N+ ++ L L +++ H + N+MT +LA+VF P +L +
Sbjct: 163 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 207
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
R SANT++ ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 85 RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 125
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
RE+PEPLLTF+ Y + ++ E RV +L+TLP+ N+ ++ L L +++ H
Sbjct: 126 RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 185
Query: 483 EANRMTPNSLAIVFAQEL 500
+ N+MT +LA+VF L
Sbjct: 186 DQNKMTNTNLAVVFGPNL 203
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 93 VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 150
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 151 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + + +P ++ + ++ + TEGI+R+S ++E++ K + G
Sbjct: 9 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 67
Query: 195 LPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
LP ++ + Y ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+T
Sbjct: 68 LP-VDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 126
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
LP+ N+ ++ L L +++ H + N+MT +LA+VF P +L +
Sbjct: 127 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 171
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFL 423
R SANT++ ++E++ K + G LP ++ + Y ++H+ A +LK FL
Sbjct: 49 RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNALHLPAVILKTFL 89
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
RE+PEPLLTF+ Y + ++ E RV +L+TLP+ N+ ++ L L +++ H
Sbjct: 90 RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 149
Query: 483 EANRMTPNSLAIVFAQEL 500
+ N+MT +LA+VF L
Sbjct: 150 DQNKMTNTNLAVVFGPNL 167
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
++E++ K + G LP ++ + Y ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 57 VREVQQKYNMG-LP-VDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 114
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 115 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + + +P ++ + ++ + TEGI+R+S ++E++ K + G
Sbjct: 10 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 68
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+T
Sbjct: 69 LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 127
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
LP+ N+ ++ L L +++ H + N+MT +LA+VF P +L +
Sbjct: 128 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 172
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
R SANT++ ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 50 RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 90
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
RE+PEPLLTF+ Y + ++ E RV +L+TLP+ N+ ++ L L +++ H
Sbjct: 91 RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 150
Query: 483 EANRMTPNSLAIVFAQEL 500
+ N+MT +LA+VF L
Sbjct: 151 DQNKMTNTNLAVVFGPNL 168
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 58 VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 115
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 116 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 160
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + + +P ++ + ++ + TEGI+R+S ++E++ K + G
Sbjct: 6 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 64
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+T
Sbjct: 65 LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 123
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
LP+ N+ ++ L L +++ H + N+MT +LA+VF P +L +
Sbjct: 124 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 168
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
R SANT++ ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 46 RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 86
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
RE+PEPLLTF+ Y + ++ E RV +L+TLP+ N+ ++ L L +++ H
Sbjct: 87 RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 146
Query: 483 EANRMTPNSLAIVFAQEL 500
+ N+MT +LA+VF L
Sbjct: 147 DQNKMTNTNLAVVFGPNL 164
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 54 VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 111
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 112 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 156
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Query: 131 RSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
R+ FG+PL L +++ +P V++ + IE G+ TEG+YR SG + ++ +
Sbjct: 16 RNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQF 75
Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFS 248
D+ L +V+ +A LK F ++P+PL+ + + E L AA + + +R+ L
Sbjct: 76 DQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE 135
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
I+K N+D+ +I HL RV+ + N MT ++L+I F P ++R
Sbjct: 136 IVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 182
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 468
+V+ +A LK F ++P+PL+ + + E L AA + + +R+ L I+K N+D+
Sbjct: 89 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 148
Query: 469 ERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQE 522
+I HL RV+ + N MT ++L+I F L E + S IH + E
Sbjct: 149 RYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVE 202
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 598
+V+ +A LK F ++P+PL+ + + E L AA + + +R+ L I+K N+D+
Sbjct: 89 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 148
Query: 599 ERLIFHLARVAYHEEANRMTPNSL 622
+I HL RV+ + N MT ++L
Sbjct: 149 RYVITHLNRVSQQHKINLMTADNL 172
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FG+PL L +++ +P V++ + IE G+ TEG+YR SG + ++ + D+
Sbjct: 13 FGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNIN 72
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPK 255
L +V+ +A LK F ++P+PL+ + + E L AA + + +R+ L I+K
Sbjct: 73 LVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHP 132
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
N+D+ +I HL RV+ + N MT ++L+I F P ++R
Sbjct: 133 VNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 172
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 468
+V+ +A LK F ++P+PL+ + + E L AA + + +R+ L I+K N+D+
Sbjct: 79 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 138
Query: 469 ERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQE 522
+I HL RV+ + N MT ++L+I F L E + S IH + E
Sbjct: 139 RYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVE 192
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 598
+V+ +A LK F ++P+PL+ + + E L AA + + +R+ L I+K N+D+
Sbjct: 79 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 138
Query: 599 ERLIFHLARVAYHEEANRMTPNSL 622
+I HL RV+ + N MT ++L
Sbjct: 139 RYVITHLNRVSQQHKINLMTADNL 162
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + + +P ++ + ++ + TEGI+ +S ++E++ K + G
Sbjct: 37 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMG- 95
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+T
Sbjct: 96 LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 154
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
LP+ N+ ++ L L +++ H + N+MT +LA+VF P +L +
Sbjct: 155 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 199
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 390 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 85 VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 142
Query: 449 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
RV +L+TLP+ N+ ++ L L +++ H + N+MT +LA+VF L
Sbjct: 143 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNL 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 85 VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 142
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 143 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 187
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 118 IMGECGLAR-SSAARSHGHRVFGVPLSQLSSSD----GKVPSLVDRLITTIELRGIYTEG 172
+ G+C R +AA G ++FGVP + L S G +PS + T++E I+TEG
Sbjct: 44 VRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDH-IHTEG 102
Query: 173 IYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF 232
++RKSG +++ LK K+D G E L +A LLK F RE+PEP+L + +E
Sbjct: 103 LFRKSGSVIRLKALKNKVDHG---EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEAL 159
Query: 233 LRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLAR-VAYHEEANRMTPNSLAIVFAP 291
L+A L + + +L L + + R F+ R V+ N+M ++LA++FAP
Sbjct: 160 LKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAP 219
Query: 292 CILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISR 335
+L+ + +S + + L ++ + ++ L D SDI R
Sbjct: 220 NLLQTSE--GHEKMSSNTEKKLRLQAAV---VQTLIDYASDIGR 258
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
+++ LK K+D G E L +A LLK F RE+PEP+L + +E L+A L +
Sbjct: 112 RLKALKNKVDHG---EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTE 168
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLAR-VAYHEEANRMTPNSLAIVFAQE-LKTKIDE 506
+ +L L + + R F+ R V+ N+M ++LA++FA L+T
Sbjct: 169 EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH 228
Query: 507 GKLP---ESELAIHSKIQE--LKTKIDEGKLPELELE 538
K+ E +L + + + + + D G++P+ LE
Sbjct: 229 EKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILE 265
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
+++ LK K+D G E L +A LLK F RE+PEP+L + +E L+A L +
Sbjct: 112 RLKALKNKVDHG---EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTE 168
Query: 579 RVSTLFSILKTLPKPNFDLMERLIFHLAR-VAYHEEANRMTPNSL 622
+ +L L + + R F+ R V+ N+M ++L
Sbjct: 169 EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 137 VFGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
VFGVPL+ G+ +P + + + + + G++RKSG+ S+IQ L+ +++EG +
Sbjct: 20 VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALR-QMNEGAI 78
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTL 253
+ E S + +A++LK + R++PEPL+T + E FL+ + R+ + + + L
Sbjct: 79 DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLL 138
Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294
P N ++++ L++ L+ V + N+MTP +LA+ AP +
Sbjct: 139 PDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLF 179
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
+ S+IQ L+ +++EG + + E S + +A++LK + R++PEPL+T + E FL+
Sbjct: 63 VKSRIQALR-QMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQY 121
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
+ R+ + + + LP N ++++ L++ L+ V + N+MTP +LA+ A L
Sbjct: 122 VPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSL 178
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 515 AIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
+ S+IQ L+ +++EG + + E S + +A++LK + R++PEPL+T + E FL+
Sbjct: 62 GVKSRIQALR-QMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120
Query: 575 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ R+ + + + LP N ++++ L++ L+ V + N+MTP +L
Sbjct: 121 YVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
SS ++FG+ L + +D +P V ++ + +G T+GI+R+S +EL
Sbjct: 2 SSPTSPMPGQLFGISLPNICEND-NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCREL 60
Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVS 244
K K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D D +++
Sbjct: 61 KEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKIN 118
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294
T+ +L LP+ N L+ L L + H +N+MT +LA+ AP IL
Sbjct: 119 TVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSIL 168
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 448
+ELK K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D D
Sbjct: 58 RELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
+++T+ +L LP+ N L+ L L + H +N+MT +LA+ A +
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 578
+ELK K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D D
Sbjct: 58 RELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115
Query: 579 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 618
+++T+ +L LP+ N L+ L L + H +N+MT
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMT 155
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
P L+ +L+ IE +G+ +YR S + EL+ +D P ++LE+ VH+LA+
Sbjct: 26 PPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLD-CDTPSVDLEMIDVHVLADAF 83
Query: 213 KLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFH 267
K +L ++P P++ Y E + A +E+ + L +++ ++P + ++ L+ H
Sbjct: 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKH 143
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
+++ N + L+ +F+P + R
Sbjct: 144 FFKLSQTSSKNLLNARVLSEIFSPMLFR 171
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 385 QIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA- 443
Q S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A
Sbjct: 50 QSSSNLAELRQLLD-CDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAP 108
Query: 444 --DLTEDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+E+ + L +++ ++P + ++ L+ H +++ N + L+ +F+
Sbjct: 109 EVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFS 166
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 573
S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A
Sbjct: 53 SNLAELRQLLD-CDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLA 107
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 140 VPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
VPL + +S +VP + L+ + + E +++ G+ ++Q++ +D +PE
Sbjct: 162 VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET 220
Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 258
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ +
Sbjct: 221 I--PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHR 274
Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
++ L+ L + E N + N +A +F +LR
Sbjct: 275 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 311
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMER 470
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ + ++
Sbjct: 224 SNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHRNVFRY 279
Query: 471 LIFHLARVAYHEEANRMTPNSLAIVFA 497
L+ L + E N + N +A +F
Sbjct: 280 LMAFLRELLKFSEYNSVNANMIATLFT 306
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMER 600
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ + ++
Sbjct: 224 SNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHRNVFRY 279
Query: 601 LIFHLARVAYHEEANRMTPN 620
L+ L + E N + N
Sbjct: 280 LMAFLRELLKFSEYNSVNAN 299
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 140 VPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
VPL + +S +VP + L+ + + E +++ G+ ++Q++ +D +PE
Sbjct: 186 VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET 244
Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 258
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ +
Sbjct: 245 I--PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHR 298
Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
++ L+ L + E N + N +A +F +LR
Sbjct: 299 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 335
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMER 470
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ + ++
Sbjct: 248 SNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHRNVFRY 303
Query: 471 LIFHLARVAYHEEANRMTPNSLAIVFA 497
L+ L + E N + N +A +F
Sbjct: 304 LMAFLRELLKFSEYNSVNANMIATLFT 330
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMER 600
S H +A L +FL +PEP++ +E Y+ L +A + R+ ++ LP+ + ++
Sbjct: 248 SNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHRNVFRY 303
Query: 601 LIFHLARVAYHEEANRMTPN 620
L+ L + E N + N
Sbjct: 304 LMAFLRELLKFSEYNSVNAN 323
>pdb|2YUU|A Chain A, Solution Structure Of The First Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C, Delta
Length = 83
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 64 QEDRIVYL-GHELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGE 121
++ +I Y+ HE + PT C +C F W + + C+ C H+KC +I+G
Sbjct: 8 KQAKIHYIKNHEFIATFFGQPTFCSVCKD-FVWGLNKQGYKCRQCNAAIHKKCIDKIIGR 66
Query: 122 C-GLARSS 128
C G A +S
Sbjct: 67 CTGTAANS 74
>pdb|2E73|A Chain A, Solution Structure Of The Phorbol EstersDIACYLGLYCEROL
Binding Domain Of Protein Kinase C Gamma
Length = 77
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGEC 122
GH+ ++ PT C C F W I + L CQ C HR+C+ + EC
Sbjct: 7 GHKFTARFFKQPTFCSHCTD-FIWGIGKQGLQCQVCSFVVHRRCHEFVTFEC 57
>pdb|2ENZ|A Chain A, Solution Structure Of The Second C1 Domain From Human
Protein Kinase C Theta
Length = 65
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 83 PTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGECGL 124
PT CE C +L W + R L C C H +C T++ CG+
Sbjct: 23 PTFCEHCGTLL-WGLARQGLKCDACGMNVHHRCQTKVANLCGI 64
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
H+ + PT C+ C SL I + + C C H++C + CG+
Sbjct: 18 HKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGM 69
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
H+ + + PT C+ C SL I + + C C H++C + CG
Sbjct: 103 HKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCG 153
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGECGLARSSAA 130
H+ ++ PT C C F W + CQ C H++C+ + C A A
Sbjct: 38 HKFTARFFKQPTFCSHCTD-FIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPA 95
>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
Length = 214
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 144 QLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY 203
Q S D P LV +L+ IE G+ +E YR + + +D+ +
Sbjct: 33 QFSPPDVAPPLLV-KLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQ----------W 81
Query: 204 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMER 263
LA+ +K FL +P PL+T E E RA V TLP +
Sbjct: 82 DTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEP-PTLPLHRALTLRF 140
Query: 264 LIFHLARVAYHEEANRMTPNSLAIVFA 290
L+ HL RVA A +L F
Sbjct: 141 LLQHLGRVARRAPALGPAVRALGATFG 167
>pdb|1Y8F|A Chain A, Solution Structure Of The Munc13-1 C1-domain
Length = 66
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGECGL 124
H E PT C C L W I R + C C CH KC + +C L
Sbjct: 14 HNFEVWTATTPTYCYECEGLL-WGIARQGMRCTECGVKCHEKCQDLLNADCKL 65
>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 59
>pdb|3UFF|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UFF|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 59
>pdb|3UEY|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEY|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 59
>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 59
>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With Phorbol-
13-Acetate
Length = 50
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>pdb|1RFH|A Chain A, Solution Structure Of The C1 Domain Of Nore1, A Novel Ras
Effector
Length = 59
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
P C++C + + + L C NC+ TCH +C + I +C
Sbjct: 22 PGWCDLCG---REVLRQALRCANCKFTCHSECRSLIQLDC 58
>pdb|1TBN|A Chain A, Nmr Structure Of A Protein Kinase C-G Phorbol-Binding
Domain, Minimized Average Structure
pdb|1TBO|A Chain A, Nmr Structure Of A Protein Kinase C-g Phorbol-binding
Domain, 30 Structures
Length = 82
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
PT C+ C SL + + + C C HR+C + CG+
Sbjct: 21 PTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGV 62
>pdb|4FKD|A Chain A, Identification Of The Activator Binding Residues In The
Second Cysteine-rich Regulatory Domain Of Protein Kinase
C Theta
Length = 65
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 83 PTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGEC 122
PT CE C +L W + R L C C H +C T++ C
Sbjct: 20 PTFCEHCGTLL-WGLARQGLKCDACGMNVHHRCQTKVANLC 59
>pdb|2FNF|X Chain X, C1 Domain Of Nore1
Length = 72
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
P C++C + + + L C NC+ TCH +C + I +C
Sbjct: 35 PGWCDLCG---REVLRQALRCANCKFTCHSECRSLIQLDC 71
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
GH+ + T+C+ C L + + C CR + H++C R+
Sbjct: 327 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 373
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
GH+ + T+C+ C L + + C CR + H++C R+
Sbjct: 518 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
GH+ + T+C+ C L + + C CR H++C R+
Sbjct: 346 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392
>pdb|2ROW|A Chain A, The C1 Domain Of Rock Ii
Length = 84
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 64 QEDRIVYLGHELESKIINIPTACEICNS----LFKWPIERMLVCQNCRHTCHR 112
+ + I + GHE + + PT CE C +FK P L C+ C CH+
Sbjct: 16 KSNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPP--PALECRRCHIKCHK 66
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
G + K +N+ C +C FK P + + +C C+H HRKC +
Sbjct: 4 GSSGKVKELNLHELCAVCLEDFK-PRDELGICP-CKHAFHRKCLIK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,800,971
Number of Sequences: 62578
Number of extensions: 664469
Number of successful extensions: 1895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 102
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)