Query psy10137
Match_columns 625
No_of_seqs 546 out of 3201
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:47:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.5E-41 3.2E-46 331.4 15.9 189 138-326 1-194 (194)
2 cd04407 RhoGAP_myosin_IXB RhoG 100.0 5E-41 1.1E-45 324.7 16.1 183 138-321 1-186 (186)
3 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.2E-40 2.7E-45 322.0 14.3 182 138-320 1-185 (186)
4 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 4.3E-40 9.3E-45 320.6 16.0 190 137-330 1-192 (192)
5 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 2.7E-40 5.9E-45 323.4 14.6 183 138-321 1-200 (200)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 1.2E-39 2.7E-44 319.4 15.4 190 136-326 1-199 (199)
7 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 7.9E-40 1.7E-44 318.7 13.5 185 136-321 1-195 (195)
8 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 1.5E-39 3.3E-44 315.4 15.2 183 138-321 1-187 (187)
9 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.6E-39 3.6E-44 319.4 15.4 196 135-330 2-203 (203)
10 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2.9E-39 6.4E-44 320.1 16.7 191 135-326 2-214 (220)
11 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3E-39 6.5E-44 317.2 14.6 183 138-321 1-203 (203)
12 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 4.5E-39 9.8E-44 317.2 15.5 183 138-321 1-211 (211)
13 cd04377 RhoGAP_myosin_IX RhoGA 100.0 6.5E-39 1.4E-43 310.7 15.8 183 138-321 1-186 (186)
14 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 9.1E-39 2E-43 316.8 16.4 191 137-327 1-206 (216)
15 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 5.2E-39 1.1E-43 311.4 14.2 184 136-321 1-188 (188)
16 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 9.5E-39 2.1E-43 315.8 15.7 189 138-327 1-208 (213)
17 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.6E-38 5.6E-43 309.2 16.2 189 137-326 1-196 (196)
18 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2.6E-38 5.6E-43 307.8 15.2 161 138-298 1-165 (196)
19 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.9E-38 4.1E-43 306.3 13.9 175 138-329 1-182 (182)
20 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 3.9E-38 8.5E-43 307.9 16.1 189 134-326 2-195 (195)
21 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 8.8E-38 1.9E-42 306.5 18.0 180 148-328 5-202 (206)
22 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 4.7E-38 1E-42 308.1 15.9 186 137-326 1-195 (202)
23 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.2E-38 9E-43 313.4 15.6 187 137-325 1-224 (225)
24 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.3E-38 9.2E-43 308.4 14.8 186 138-323 1-207 (207)
25 KOG3564|consensus 100.0 3.4E-38 7.5E-43 323.8 14.6 246 69-321 283-533 (604)
26 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.7E-38 1E-42 304.0 14.5 175 141-321 4-183 (200)
27 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1E-37 2.2E-42 301.7 15.7 179 138-321 1-181 (185)
28 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 8.7E-38 1.9E-42 305.0 15.0 185 138-326 1-192 (192)
29 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 3.4E-37 7.3E-42 302.8 17.2 185 138-329 1-199 (208)
30 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.6E-37 9.9E-42 298.4 16.8 173 148-322 13-189 (193)
31 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.3E-36 2.9E-41 293.9 16.3 180 139-322 2-184 (184)
32 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 7.7E-37 1.7E-41 301.1 13.4 189 138-328 1-210 (212)
33 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.4E-36 3.1E-41 295.2 15.1 183 136-321 1-189 (189)
34 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 3.6E-36 7.7E-41 294.0 15.5 168 153-321 29-203 (203)
35 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 5.7E-36 1.2E-40 289.7 14.6 178 138-321 1-187 (187)
36 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 9.6E-36 2.1E-40 289.6 14.3 177 137-328 1-189 (190)
37 KOG1453|consensus 100.0 3.3E-36 7.2E-41 351.1 11.4 294 12-326 492-797 (918)
38 KOG4407|consensus 100.0 5.2E-33 1.1E-37 309.7 12.2 196 133-328 1153-1356(1973)
39 smart00324 RhoGAP GTPase-activ 100.0 6.6E-32 1.4E-36 259.5 16.3 170 151-321 2-173 (174)
40 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 3.8E-31 8.1E-36 262.9 13.0 163 151-319 49-217 (220)
41 cd00159 RhoGAP RhoGAP: GTPase- 100.0 2.3E-30 5.1E-35 247.1 16.1 167 153-321 1-169 (169)
42 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.9E-30 4.1E-35 251.6 14.5 165 358-523 18-185 (188)
43 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.7E-30 5.9E-35 249.9 14.6 134 372-506 28-163 (186)
44 KOG2200|consensus 100.0 2.9E-30 6.2E-35 272.3 14.7 197 130-326 293-510 (674)
45 cd04406 RhoGAP_myosin_IXA RhoG 100.0 3.6E-30 7.9E-35 249.0 13.5 148 358-507 15-164 (186)
46 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 4.6E-30 9.9E-35 251.3 13.4 153 355-509 13-179 (200)
47 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 5.7E-30 1.2E-34 251.6 13.8 133 374-506 23-169 (208)
48 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 9.5E-30 2.1E-34 253.4 15.2 152 356-508 30-202 (225)
49 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 8.6E-30 1.9E-34 246.5 14.1 151 356-507 13-165 (185)
50 cd04372 RhoGAP_chimaerin RhoGA 100.0 7.6E-30 1.7E-34 248.9 13.8 135 373-507 30-168 (194)
51 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 1.2E-29 2.5E-34 246.2 14.2 135 373-507 30-167 (187)
52 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.3E-29 2.8E-34 244.7 13.8 145 373-528 34-180 (182)
53 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.7E-29 3.7E-34 244.4 14.4 132 373-506 29-165 (200)
54 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 1.8E-29 3.8E-34 247.8 14.7 135 373-508 23-169 (206)
55 KOG1451|consensus 100.0 4.9E-30 1.1E-34 268.9 11.1 174 154-328 390-569 (812)
56 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.1E-29 6.7E-34 244.3 14.1 151 357-509 17-171 (195)
57 KOG1450|consensus 100.0 1.2E-29 2.6E-34 275.7 12.2 192 135-327 454-649 (650)
58 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 3.6E-29 7.7E-34 245.4 14.5 136 373-508 32-174 (207)
59 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 3.4E-29 7.5E-34 243.3 14.0 134 373-508 31-166 (193)
60 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.7E-29 3.7E-34 246.0 11.7 150 357-507 15-167 (196)
61 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 3.7E-29 8.1E-34 241.9 13.6 150 356-506 13-165 (184)
62 cd04390 RhoGAP_ARHGAP22_24_25 100.0 5.6E-29 1.2E-33 244.0 14.5 134 373-507 36-173 (199)
63 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4.4E-29 9.6E-34 244.0 13.1 135 373-507 42-183 (203)
64 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 3.3E-29 7.1E-34 248.4 12.2 135 372-507 33-169 (220)
65 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 7.7E-29 1.7E-33 243.7 14.1 157 373-529 34-201 (203)
66 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 6.7E-29 1.5E-33 243.9 13.7 134 373-507 30-179 (203)
67 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 8.3E-29 1.8E-33 241.3 14.0 133 373-507 29-163 (192)
68 KOG4269|consensus 100.0 2.4E-29 5.3E-34 274.3 10.7 185 131-330 893-1087(1112)
69 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 9.9E-29 2.2E-33 244.4 14.1 135 373-507 41-182 (213)
70 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 9.3E-29 2E-33 243.9 12.8 149 357-507 15-187 (211)
71 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.9E-28 4E-33 238.3 14.6 135 373-508 34-171 (189)
72 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.4E-28 3E-33 244.0 14.1 135 373-507 36-173 (216)
73 cd04377 RhoGAP_myosin_IX RhoGA 100.0 1.8E-28 3.9E-33 237.7 14.2 134 373-507 29-164 (186)
74 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.8E-28 4E-33 240.3 14.1 131 374-507 34-166 (202)
75 PF00620 RhoGAP: RhoGAP domain 100.0 4.9E-29 1.1E-33 233.8 8.8 146 153-298 1-148 (151)
76 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.8E-28 6.1E-33 238.4 14.5 138 372-509 31-172 (196)
77 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 4.5E-28 9.8E-33 235.8 14.4 164 357-529 21-189 (190)
78 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4.4E-28 9.6E-33 234.6 11.9 145 357-507 20-166 (187)
79 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.2E-27 2.5E-32 234.1 14.7 148 357-507 22-171 (195)
80 cd04398 RhoGAP_fRGD1 RhoGAP_fR 99.9 1.5E-27 3.1E-32 232.9 13.3 134 373-506 30-169 (192)
81 KOG4270|consensus 99.9 2.8E-27 6E-32 256.9 13.7 165 132-298 141-313 (577)
82 KOG4406|consensus 99.9 1.7E-27 3.8E-32 243.1 10.3 192 133-328 249-447 (467)
83 KOG4724|consensus 99.9 5.5E-27 1.2E-31 250.3 11.3 437 132-622 77-577 (741)
84 KOG2200|consensus 99.9 4.9E-27 1.1E-31 247.9 9.6 181 371-553 328-511 (674)
85 cd04399 RhoGAP_fRGD2 RhoGAP_fR 99.9 1.7E-26 3.6E-31 227.7 11.8 151 378-528 41-209 (212)
86 smart00324 RhoGAP GTPase-activ 99.9 6.4E-26 1.4E-30 217.9 13.4 136 373-508 17-154 (174)
87 KOG2710|consensus 99.9 5.1E-26 1.1E-30 238.2 13.1 180 148-327 90-292 (412)
88 KOG4270|consensus 99.9 8.4E-26 1.8E-30 245.4 14.0 156 373-530 181-342 (577)
89 KOG1453|consensus 99.9 5.4E-26 1.2E-30 265.7 13.2 381 70-529 389-799 (918)
90 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.9 1.3E-25 2.7E-30 223.4 13.7 131 373-509 64-199 (220)
91 KOG1117|consensus 99.9 8.3E-26 1.8E-30 245.5 11.1 185 138-330 713-900 (1186)
92 cd00159 RhoGAP RhoGAP: GTPase- 99.9 2.3E-24 5E-29 205.7 13.4 134 373-507 14-149 (169)
93 PF00620 RhoGAP: RhoGAP domain 99.9 7.6E-25 1.6E-29 205.4 9.3 134 373-506 14-149 (151)
94 KOG3564|consensus 99.9 7.5E-23 1.6E-27 211.2 13.6 170 373-575 376-547 (604)
95 KOG4269|consensus 99.9 1.4E-22 3E-27 221.8 11.3 147 358-504 919-1069(1112)
96 KOG1117|consensus 99.9 1.2E-22 2.6E-27 221.2 10.0 176 353-531 722-900 (1186)
97 KOG4407|consensus 99.9 3.2E-22 7E-27 224.2 11.5 158 373-530 1188-1357(1973)
98 KOG2710|consensus 99.9 7.8E-22 1.7E-26 206.8 12.7 228 274-503 4-254 (412)
99 KOG1452|consensus 99.9 7.6E-22 1.7E-26 194.4 8.1 194 135-328 182-383 (442)
100 KOG1450|consensus 99.9 3.1E-21 6.7E-26 210.3 13.0 149 372-520 485-636 (650)
101 KOG1451|consensus 99.8 8.1E-21 1.8E-25 200.1 11.3 158 373-530 402-570 (812)
102 KOG4406|consensus 99.8 5.5E-20 1.2E-24 188.5 11.1 174 355-530 268-448 (467)
103 KOG4271|consensus 99.8 5.9E-19 1.3E-23 194.7 5.6 159 134-294 914-1076(1100)
104 cd04405 RhoGAP_BRCC3-like RhoG 99.6 1.2E-15 2.6E-20 148.0 12.8 182 136-327 20-229 (235)
105 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 1.3E-15 2.9E-20 146.7 12.9 145 153-298 7-166 (198)
106 KOG4724|consensus 99.6 1.7E-16 3.6E-21 170.6 5.9 140 475-622 67-228 (741)
107 cd04405 RhoGAP_BRCC3-like RhoG 99.5 1.3E-13 2.8E-18 134.0 11.8 155 369-527 49-228 (235)
108 KOG4271|consensus 99.5 3.4E-14 7.4E-19 157.6 4.5 129 373-501 946-1076(1100)
109 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.4 5.4E-13 1.2E-17 128.7 11.7 138 373-510 20-171 (198)
110 KOG4370|consensus 99.4 7.3E-13 1.6E-17 136.1 12.3 186 149-502 68-255 (514)
111 KOG1452|consensus 99.4 1.5E-13 3.2E-18 136.2 6.4 132 373-504 214-352 (442)
112 KOG0696|consensus 99.2 6E-12 1.3E-16 130.0 2.4 114 57-177 30-143 (683)
113 KOG3565|consensus 99.1 5.2E-11 1.1E-15 133.6 5.2 146 150-296 216-365 (640)
114 KOG4370|consensus 99.0 8.1E-10 1.8E-14 114.0 7.7 116 200-330 158-275 (514)
115 PF00130 C1_1: Phorbol esters/ 98.9 6.6E-10 1.4E-14 84.8 2.9 52 73-124 1-52 (53)
116 KOG4236|consensus 98.7 6.1E-09 1.3E-13 110.9 3.0 61 66-126 139-199 (888)
117 KOG0694|consensus 98.7 4.7E-09 1E-13 115.5 0.7 100 64-164 150-252 (694)
118 cd00029 C1 Protein kinase C co 98.7 9.3E-09 2E-13 77.3 2.0 50 73-122 1-50 (50)
119 KOG4236|consensus 98.6 5.3E-09 1.1E-13 111.4 0.1 56 71-126 266-321 (888)
120 KOG0695|consensus 98.6 1.8E-08 3.8E-13 102.1 1.9 60 67-126 125-184 (593)
121 KOG3565|consensus 98.6 4.9E-08 1.1E-12 109.9 4.9 135 372-507 231-369 (640)
122 smart00109 C1 Protein kinase C 98.5 4.4E-08 9.4E-13 73.2 1.7 49 73-122 1-49 (49)
123 PF08101 DUF1708: Domain of un 98.4 1.2E-06 2.6E-11 94.1 11.4 148 152-299 8-169 (420)
124 KOG0696|consensus 98.4 8.2E-08 1.8E-12 99.9 -0.0 57 70-126 108-164 (683)
125 KOG4239|consensus 98.3 1.4E-07 3E-12 94.3 1.0 66 62-127 41-106 (348)
126 KOG1011|consensus 97.8 3.1E-06 6.7E-11 91.7 -0.8 55 70-124 170-224 (1283)
127 PF08101 DUF1708: Domain of un 97.3 0.00069 1.5E-08 73.1 8.7 135 373-507 22-170 (420)
128 KOG0694|consensus 97.3 6.6E-05 1.4E-09 83.5 0.1 57 70-126 228-284 (694)
129 KOG2996|consensus 97.2 0.00014 3E-09 78.6 1.1 55 69-124 520-574 (865)
130 KOG1449|consensus 97.1 5.4E-05 1.2E-09 81.9 -2.8 80 411-505 273-355 (670)
131 KOG0193|consensus 96.2 0.0024 5.1E-08 70.5 1.8 54 69-125 175-228 (678)
132 KOG1449|consensus 94.3 0.0037 8E-08 68.1 -3.8 172 135-333 207-393 (670)
133 KOG3532|consensus 89.8 0.054 1.2E-06 60.2 -1.9 49 70-120 70-118 (1051)
134 PF03107 C1_2: C1 domain; Int 89.6 0.2 4.4E-06 33.2 1.4 29 85-115 2-30 (30)
135 KOG1169|consensus 85.2 0.32 6.9E-06 54.8 0.6 56 71-126 97-155 (634)
136 KOG3532|consensus 82.6 0.68 1.5E-05 51.9 1.7 49 69-119 743-791 (1051)
137 PF14446 Prok-RING_1: Prokaryo 77.5 1.1 2.3E-05 34.0 0.9 38 84-123 6-43 (54)
138 PF07649 C1_3: C1-like domain; 75.9 0.83 1.8E-05 30.2 -0.1 29 85-115 2-30 (30)
139 KOG0612|consensus 69.0 1.1 2.4E-05 53.6 -1.2 55 68-123 1205-1259(1317)
140 PF10367 Vps39_2: Vacuolar sor 65.2 4.8 0.0001 34.7 2.3 37 78-117 73-109 (109)
141 PF13901 DUF4206: Domain of un 62.1 4.7 0.0001 39.6 1.9 40 83-124 152-194 (202)
142 PF13831 PHD_2: PHD-finger; PD 45.7 5.8 0.00012 27.5 -0.4 19 100-118 4-22 (36)
143 PF08746 zf-RING-like: RING-li 40.5 8.4 0.00018 27.8 -0.2 29 86-118 1-31 (43)
144 PF00628 PHD: PHD-finger; Int 40.2 17 0.00036 26.8 1.4 32 85-118 1-32 (51)
145 KOG3520|consensus 35.0 15 0.00033 44.5 0.6 49 68-118 183-231 (1167)
146 PF03604 DNA_RNApol_7kD: DNA d 29.7 32 0.0007 23.2 1.3 25 85-109 2-26 (32)
147 PF07282 OrfB_Zn_ribbon: Putat 28.7 32 0.0007 27.1 1.4 32 82-113 27-59 (69)
148 PF12491 ApoB100_C: Apolipopro 27.5 87 0.0019 24.0 3.3 37 580-617 21-57 (58)
149 PF02318 FYVE_2: FYVE-type zin 24.7 43 0.00093 29.8 1.6 36 82-117 53-88 (118)
150 KOG0957|consensus 23.6 68 0.0015 35.3 3.0 33 85-118 121-154 (707)
151 KOG3362|consensus 22.3 30 0.00065 31.7 0.0 28 82-115 117-145 (156)
152 smart00661 RPOL9 RNA polymeras 21.7 55 0.0012 24.1 1.4 26 85-110 2-30 (52)
153 COG1571 Predicted DNA-binding 21.3 49 0.0011 36.0 1.4 40 73-113 341-380 (421)
154 KOG1253|consensus 20.6 87 0.0019 34.8 3.1 52 153-213 361-413 (525)
No 1
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.5e-41 Score=331.40 Aligned_cols=189 Identities=31% Similarity=0.633 Sum_probs=172.4
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcC-CCCCCCccCc-ChHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG-KLPELELEVY-SVHILANLLKL 214 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g-~~~~~~~~~~-d~~~va~~lK~ 214 (625)
||++|+.++..++ .||.++.+|++||+++|+.+|||||+||+.++++++++.+|++ ....+....+ |+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 8999999998765 8999999999999999999999999999999999999999984 3233332233 89999999999
Q ss_pred HHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccc
Q psy10137 215 FLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPC 292 (625)
Q Consensus 215 fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~ 292 (625)
|||+||+||+|+++|+.|+++.+..+ +++.+++.++.+||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~ 160 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPT 160 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcc
Confidence 99999999999999999999987654 7889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 293 ILRQRHFPAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 293 Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
|++++..+....+.++..+..+|++||+|+..||
T Consensus 161 Ll~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 161 LMRPPEDSALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred cCCCCCccHHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 9999766666778899999999999999999887
No 2
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5e-41 Score=324.70 Aligned_cols=183 Identities=44% Similarity=0.868 Sum_probs=169.4
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr 217 (625)
||++|+.++.....||.++.+|++||+++|+.+|||||++|+..+++++++.++.|. ..++++++|+|+||++||.|||
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~-~~~~~~~~d~h~va~lLK~flR 79 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADP-ENVKLENYPIHAITGLLKQWLR 79 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCC-cccCcccCCHHHHHHHHHHHHH
Confidence 899999998877799999999999999999999999999999999999999999874 3456678899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+||+|+++|+.|+.+.+..+ +++.+++.++..||+.|+.+|++|+.||++|+++++.|+||++|||+||||+|+|
T Consensus 80 eLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 80 ELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred hCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 99999999999999999987655 7889999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCchhhHHhhHHHHHHHHHHHHh
Q psy10137 296 QRH-FPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 296 ~~~-~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
++. .++..++.++.++..+||+||++
T Consensus 160 ~~~~~d~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSSDPLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCCCHHHHHHhhhhhHHHHHHHhhC
Confidence 753 34456789999999999999974
No 3
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.2e-40 Score=321.99 Aligned_cols=182 Identities=49% Similarity=0.896 Sum_probs=168.7
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr 217 (625)
||++|+.+...++.||.++.+|++||+++|+.+|||||++|+.+++++|++.||.|. ..++++++|+|+||++||.|||
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~-~~~~~~~~d~h~va~lLK~fLR 79 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDA-NSVNLDDYNIHVIASVFKQWLR 79 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCC-CCCCcccCCHHHHHHHHHHHHH
Confidence 899999998878899999999999999999999999999999999999999999864 2456678899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+||+|+++|+.|+++.+..+ +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+|
T Consensus 80 eLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 80 DLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred hCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 99999999999999999987665 7888999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCchhhHHhhHHHHHHHHHHHH
Q psy10137 296 QRH-FPAQDALSDISRQTLCIELIIS 320 (625)
Q Consensus 296 ~~~-~~~~~~~~~~~~~~~~ve~lI~ 320 (625)
+++ .++..++.|+.+|+.+||+||.
T Consensus 160 ~p~~~d~~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTTDPLQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCCCHHHHHHHHhhccchhhhhcc
Confidence 854 3445679999999999999985
No 4
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-40 Score=320.57 Aligned_cols=190 Identities=30% Similarity=0.533 Sum_probs=175.8
Q ss_pred eecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137 137 VFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL 216 (625)
Q Consensus 137 ~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL 216 (625)
+||+||+.++. ++.||.++.+|++||+++|+.+|||||++|+.++++++++.+|+|+. ++++.+|+|++|+++|+||
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~--~~~~~~~~~~va~~lK~fl 77 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVE--VDLKAEPVLLLASVLKDFL 77 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCC--CCCccCCHHHHHHHHHHHH
Confidence 59999999998 67999999999999999999999999999999999999999999853 4567899999999999999
Q ss_pred HhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccc
Q psy10137 217 REMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294 (625)
Q Consensus 217 r~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Ll 294 (625)
|+||+||+|++.|+.|+.+++..+ +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+
T Consensus 78 reLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~ 157 (192)
T cd04402 78 RNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLL 157 (192)
T ss_pred HhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccccc
Confidence 999999999999999999887654 788999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137 295 RQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL 330 (625)
Q Consensus 295 r~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~ 330 (625)
|++... ...+.+......++++||+|+.+||+|++
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 158 WPPASS-ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCCcc-HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 996543 34567788899999999999999998873
No 5
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-40 Score=323.44 Aligned_cols=183 Identities=37% Similarity=0.574 Sum_probs=166.6
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL 216 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL 216 (625)
||++|+.+....+ .||.+|.+|++||+++|+++|||||++|+..++++|++.|++|.. .++++++|+|+||++||+||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fL 79 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRD-LVDLSGHSPHDITSVLKHFL 79 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCC-ccCcccCCHHHHHHHHHHHH
Confidence 8999999998655 899999999999999999999999999999999999999999853 45667789999999999999
Q ss_pred HhCCCCCCChhhHHHHHHHhcC--------------chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCc
Q psy10137 217 REMPEPLLTFEYYEEFLRAADL--------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTP 282 (625)
Q Consensus 217 r~Lp~pLl~~~~y~~~l~~~~~--------------~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~ 282 (625)
|+||+||+|+++|+.|+.+.+. .++++.+++.++..||+.|+.||.+|+.||++|+.+++.|+||+
T Consensus 80 ReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 80 KELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999987642 12578999999999999999999999999999999999999999
Q ss_pred cchhhhccccccccCCCC--chhhHHhhHHHHHHHHHHHHh
Q psy10137 283 NSLAIVFAPCILRQRHFP--AQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 283 ~nLaivf~P~Llr~~~~~--~~~~~~~~~~~~~~ve~lI~~ 321 (625)
.|||+||||+|++++... ....+.|+..|..+||+||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence 999999999999996432 345578999999999999986
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=1.2e-39 Score=319.44 Aligned_cols=190 Identities=31% Similarity=0.535 Sum_probs=171.1
Q ss_pred eeecccccccccCC-----CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137 136 RVFGVPLSQLSSSD-----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN 210 (625)
Q Consensus 136 ~~FG~~L~~l~~~~-----~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~ 210 (625)
.+||++|++++... ..||.++.+|++||+++|+++|||||++|+..+++++++.+|+|....++ ..+|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHH
Confidence 37999999987522 26999999999999999999999999999999999999999998644433 3579999999
Q ss_pred HHHHHHHhCCCCCCChhhHHHHHHHhcCc---h-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137 211 LLKLFLREMPEPLLTFEYYEEFLRAADLT---E-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA 286 (625)
Q Consensus 211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~---~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa 286 (625)
+||.|||+||+||+|++.|+.|+.+.... + .++..++.++..||+.|+.+|.+|+.||++|+++++.|+||++|||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999987642 2 5678899999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 287 IVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 287 ivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
+||||+|+|++..+....+.+......++++||+|++.+|
T Consensus 160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999999776677778888888999999999988876
No 7
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.9e-40 Score=318.70 Aligned_cols=185 Identities=35% Similarity=0.658 Sum_probs=166.2
Q ss_pred eeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCc--cCcChHHHHHHH
Q psy10137 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELEL--EVYSVHILANLL 212 (625)
Q Consensus 136 ~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~--~~~d~~~va~~l 212 (625)
++||++|++++...+ .||.++..|++||+++|+ +|||||+||+.++++++++.+|+|....+.. ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 489999999986554 999999999999999999 5999999999999999999999986433321 235999999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|.|||+||+||+|+++|+.|+++.+..+ +++++++.++.+||+.|+.||++|+.||++|+++++.|+||++|||+|||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWA 159 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhh
Confidence 9999999999999999999999987644 78899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCc-----hhhHHhhHHHHHHHHHHHHh
Q psy10137 291 PCILRQRHFPA-----QDALSDISRQTLCIELIISE 321 (625)
Q Consensus 291 P~Llr~~~~~~-----~~~~~~~~~~~~~ve~lI~~ 321 (625)
|+|++++.... ...+.++..|..+|++||.|
T Consensus 160 P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 160 PNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 99999954222 45688999999999999986
No 8
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-39 Score=315.40 Aligned_cols=183 Identities=38% Similarity=0.657 Sum_probs=165.5
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCC-ccCcChHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELE-LEVYSVHILANLLKLF 215 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~-~~~~d~~~va~~lK~f 215 (625)
||++|+.++..++ .||.++.+|+.||+++|+++|||||++|+...+++|+..+|.|...+++ .+..|+|++|++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 8999999987655 8999999999999999999999999999999999999999997543332 2345999999999999
Q ss_pred HHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccc
Q psy10137 216 LREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293 (625)
Q Consensus 216 Lr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~L 293 (625)
||+||+||+|++.|+.|+++.+..+ +++.+++.++..||+.|+.+|.+|+.||++|+++++.|+||+.|||+||||+|
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~l 160 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTL 160 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccc
Confidence 9999999999999999999988764 78999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 294 LRQRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 294 lr~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
+|++.... ....++.+|.++||+||++
T Consensus 161 l~~~~~~~-~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 161 LRPEQETG-NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred cCCCCcch-HHHHHhHHHHHHHHHHhhC
Confidence 99965433 3445788999999999975
No 9
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-39 Score=319.40 Aligned_cols=196 Identities=31% Similarity=0.521 Sum_probs=174.0
Q ss_pred ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCC-CCccCcChHHHHHHH
Q psy10137 135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE-LELEVYSVHILANLL 212 (625)
Q Consensus 135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~-~~~~~~d~~~va~~l 212 (625)
+++||++|.+++..++ .||.++.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... .....+|+|++|++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 4689999999987554 89999999999999999999999999999999999999999986321 233456999999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|.|||+||+||+|++.|+.|+.+.+..+ +++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+++|||+|||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~fa 161 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLA 161 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhc
Confidence 9999999999999999999999987654 78899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCch--hhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137 291 PCILRQRHFPAQ--DALSDISRQTLCIELIISEQLKKLADAL 330 (625)
Q Consensus 291 P~Llr~~~~~~~--~~~~~~~~~~~~ve~lI~~~~~if~d~~ 330 (625)
|+|+|++..... ...........++++||+||..||+|++
T Consensus 162 P~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~ 203 (203)
T cd04386 162 PNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGEV 203 (203)
T ss_pred cccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence 999999654322 2234566789999999999999999864
No 10
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-39 Score=320.12 Aligned_cols=191 Identities=27% Similarity=0.496 Sum_probs=171.2
Q ss_pred ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHH
Q psy10137 135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLK 213 (625)
Q Consensus 135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK 213 (625)
+++||+||..++...+ .||.+|.+|+.||+.+|+.+|||||++|+..++++|++.+|.+. ...+++.+++|+||++||
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~-~~~~~~~~~~~~va~lLK 80 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESST-DNVNYDGQQAYDVADMLK 80 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCC-CccCcccccHHHHHHHHH
Confidence 4699999998776554 89999999999999999999999999999999999999999863 234667789999999999
Q ss_pred HHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137 214 LFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291 (625)
Q Consensus 214 ~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P 291 (625)
+|||+||+||+|+++|+.|+.+.+..+ +++++++.++..||++|+.+|++|+.||++|+.+++.|+||++|||+||||
T Consensus 81 ~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 81 QYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 999999999999999999999876432 788999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC-------------------CchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 292 CILRQRHF-------------------PAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 292 ~Llr~~~~-------------------~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
+||+.... +....+.+....+.+|.+||+|+.++|
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf 214 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLF 214 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998432 123456777888999999999999888
No 11
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3e-39 Score=317.24 Aligned_cols=183 Identities=37% Similarity=0.627 Sum_probs=165.6
Q ss_pred ecccccccccCC-CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSD-GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL 216 (625)
Q Consensus 138 FG~~L~~l~~~~-~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL 216 (625)
||++|+.++... +.||.+|.+|+++|+++|+.+|||||++|+..+++++++.|++|. ..++++++|+|++|++||+||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~-~~~~~~~~~~h~va~~LK~fL 79 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGK-DLVELSELSPHDISSVLKLFL 79 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCC-CccccccCCHHHHHHHHHHHH
Confidence 899999998865 499999999999999999999999999999999999999999975 335667889999999999999
Q ss_pred HhCCCCCCChhhHHHHHHHhcCc----------------hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q psy10137 217 REMPEPLLTFEYYEEFLRAADLT----------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM 280 (625)
Q Consensus 217 r~Lp~pLl~~~~y~~~l~~~~~~----------------~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkM 280 (625)
|+||+||+|+++|+.|+.+++.. .+++.+++.++..||+.|+.||.+|+.||++|+++++.|+|
T Consensus 80 ReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 80 RQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999987421 14678999999999999999999999999999999999999
Q ss_pred CccchhhhccccccccCCCCc---hhhHHhhHHHHHHHHHHHHh
Q psy10137 281 TPNSLAIVFAPCILRQRHFPA---QDALSDISRQTLCIELIISE 321 (625)
Q Consensus 281 t~~nLaivf~P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~ 321 (625)
+++|||+||||+|+|++..+. ..++.++..|+.+||+||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999965422 34577999999999999986
No 12
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.5e-39 Score=317.23 Aligned_cols=183 Identities=34% Similarity=0.616 Sum_probs=163.5
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL 216 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL 216 (625)
||++|+.++...+ .||.+|.+|+++|+++|+.+|||||++|+..++++|++.|++|.. .++++++|+|++|++||.||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~~LK~fL 79 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKD-LVELSELSPHDISNVLKLYL 79 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCC-ccccccCCHHHHHHHHHHHH
Confidence 8999999987554 899999999999999999999999999999999999999999852 34566789999999999999
Q ss_pred HhCCCCCCChhhHHHHHHHhcCc------------------------hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy10137 217 REMPEPLLTFEYYEEFLRAADLT------------------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA 272 (625)
Q Consensus 217 r~Lp~pLl~~~~y~~~l~~~~~~------------------------~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~ 272 (625)
|+||+||+|+++|+.|+++++.. +.++.+++.++.+||++|+.||++|+.||++|+
T Consensus 80 ReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 80 RQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred HhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876421 013568899999999999999999999999999
Q ss_pred hccCcCCCCccchhhhccccccccCCCCc---hhhHHhhHHHHHHHHHHHHh
Q psy10137 273 YHEEANRMTPNSLAIVFAPCILRQRHFPA---QDALSDISRQTLCIELIISE 321 (625)
Q Consensus 273 ~~~~~NkMt~~nLaivf~P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~ 321 (625)
++++.|+||++|||+||||+|+|++..+. ..++.++..|..+||+||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999965432 34577999999999999974
No 13
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=6.5e-39 Score=310.71 Aligned_cols=183 Identities=52% Similarity=0.930 Sum_probs=169.9
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr 217 (625)
||++|+.++..++.||.++..|++||+++|+++|||||++|+..+++++++.+++|. ..++++++|+|+||++||+|||
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~-~~~~~~~~~~~~va~~LK~flr 79 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLR 79 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCC-cccCcccCCHHHHHHHHHHHHH
Confidence 899999999877799999999999999999999999999999999999999999973 3566778999999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+||+|++.|+.|+.+.+..+ +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|
T Consensus 80 ~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 80 ELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred cCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 99999999999999999987665 7889999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CchhhHHhhHHHHHHHHHHHHh
Q psy10137 296 QRHF-PAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 296 ~~~~-~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
++.. ++..+++|+.+++.+||+||++
T Consensus 160 ~~~~~~~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTADPLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 8543 3446799999999999999974
No 14
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.1e-39 Score=316.81 Aligned_cols=191 Identities=33% Similarity=0.495 Sum_probs=171.3
Q ss_pred eecccccccccCC------CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCccCcChHHHH
Q psy10137 137 VFGVPLSQLSSSD------GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELELEVYSVHILA 209 (625)
Q Consensus 137 ~FG~~L~~l~~~~------~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~~~~d~~~va 209 (625)
+||+||+.++..+ ..||.++.+|+.+|+++|+.+|||||++|+..++++|++.++.+.. ..++++.+|+|++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 6999999998643 3799999999999999999999999999999999999999998632 24667788999999
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhh
Q psy10137 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI 287 (625)
Q Consensus 210 ~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLai 287 (625)
++||.|||+||+||+|+++|+.|+.+.+..+ +++.+++.++..||+.|+.+|++|+.||++|+++++.||||++|||+
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence 9999999999999999999999999887765 67899999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCc------hhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137 288 VFAPCILRQRHFPA------QDALSDISRQTLCIELIISEQLKKLA 327 (625)
Q Consensus 288 vf~P~Llr~~~~~~------~~~~~~~~~~~~~ve~lI~~~~~if~ 327 (625)
||||+||++..... ...+.+......++++||+|+..||.
T Consensus 161 vfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~ 206 (216)
T cd04391 161 IMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWT 206 (216)
T ss_pred HhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 99999999854322 23456667788999999999999984
No 15
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=5.2e-39 Score=311.36 Aligned_cols=184 Identities=28% Similarity=0.492 Sum_probs=163.8
Q ss_pred eeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCC-CccCcChHHHHHHHH
Q psy10137 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLK 213 (625)
Q Consensus 136 ~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~-~~~~~d~~~va~~lK 213 (625)
++||++|++++...+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|..... +.+.+|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 479999999987655 899999999999999999999999999999999999999999864322 234679999999999
Q ss_pred HHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137 214 LFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291 (625)
Q Consensus 214 ~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P 291 (625)
.|||+||+||+|+++|+.|+++.+..+ +++..++.++.+||+.|+.+|++|+.||++|+++++.|+||++|||+||||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 160 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGP 160 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeec
Confidence 999999999999999999999987654 788999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 292 CILRQRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 292 ~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
+|+|.+. ..+.+.......++++.||.|
T Consensus 161 ~L~~~p~--~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 161 TLMPVPE--GQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred cccCCCC--CccHHHHHHHHHHHHHHHhcC
Confidence 9999754 334455566777788888764
No 16
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.5e-39 Score=315.81 Aligned_cols=189 Identities=30% Similarity=0.468 Sum_probs=168.4
Q ss_pred ecccccccccCCC------------CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcCh
Q psy10137 138 FGVPLSQLSSSDG------------KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSV 205 (625)
Q Consensus 138 FG~~L~~l~~~~~------------~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~ 205 (625)
||+||+.++..++ .||.++.+|+.+|+++|+.+|||||++|+..+++++++.|++|.....++..+|+
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 8999999887543 4999999999999999999999999999999999999999997544456677899
Q ss_pred HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccC-----cC
Q psy10137 206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----AN 278 (625)
Q Consensus 206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~-----~N 278 (625)
|+||++||.|||+||+||+|+++|+.|+.+.+..+ ++...++.++..||+.|+.||++|+.||++|+.+++ .|
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N 160 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 99999999999999999999999999999987655 678889999999999999999999999999998764 59
Q ss_pred CCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137 279 RMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA 327 (625)
Q Consensus 279 kMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~ 327 (625)
+||++|||+||||+|++++... .....+......+|++||+|+..+|.
T Consensus 161 kM~~~NLAivf~P~Ll~~~~~~-~~~~~~~~~~~~vv~~LI~n~~~if~ 208 (213)
T cd04397 161 KMDIHNLATVITPNILYSKTDN-PNTGDEYFLAIEAVNYLIENNEEFCE 208 (213)
T ss_pred cCChHHhHHhhcccccCCCCCC-cchHHHHHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999999986533 23455666788999999999999884
No 17
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-38 Score=309.21 Aligned_cols=189 Identities=32% Similarity=0.575 Sum_probs=171.1
Q ss_pred eecccccccccCC--CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCC---ccCcChHHHHHH
Q psy10137 137 VFGVPLSQLSSSD--GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELE---LEVYSVHILANL 211 (625)
Q Consensus 137 ~FG~~L~~l~~~~--~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~---~~~~d~~~va~~ 211 (625)
.||+||+...... ..||.++..|+.+|+.+|+++|||||++|+..++++|++.+|+|... ++ .+..|+|++|++
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHH
Confidence 4999999877643 48999999999999999999999999999999999999999998532 22 234699999999
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137 212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 289 (625)
Q Consensus 212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf 289 (625)
||.|||+||+||+|.+.|+.|+.+.+..+ +++..++.++.+||+.|+.||.+|+.||++|+.+++.|+|+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 99999999999999999999999887654 7889999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 290 APCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
||+|+|++..+......++..+..+++.||+||..+|
T Consensus 160 aP~l~r~~~~~~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDNMETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCCHHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 9999999765555667789999999999999988776
No 18
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2.6e-38 Score=307.85 Aligned_cols=161 Identities=39% Similarity=0.646 Sum_probs=149.3
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCC-CCCccCcChHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLF 215 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~-~~~~~~~d~~~va~~lK~f 215 (625)
||++|+.++..++ .||.++.+|++||+++|+.+|||||+||+..+++++++.+|+|... ..+++.+|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 8999999988776 7999999999999999999999999999999999999999987432 2345678999999999999
Q ss_pred HHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccc
Q psy10137 216 LREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293 (625)
Q Consensus 216 Lr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~L 293 (625)
||+||+||+|+++|+.|+++.+..+ +++.+++.++.+||+.|+.||.+|+.||++|+++++.|+||+.|||+||||+|
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L 160 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTL 160 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcccc
Confidence 9999999999999999999987655 67889999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy10137 294 LRQRH 298 (625)
Q Consensus 294 lr~~~ 298 (625)
+|++.
T Consensus 161 lr~~~ 165 (196)
T cd04387 161 LRPSE 165 (196)
T ss_pred CCCCc
Confidence 99954
No 19
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.9e-38 Score=306.27 Aligned_cols=175 Identities=32% Similarity=0.474 Sum_probs=161.5
Q ss_pred ecccccccccCC-----CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137 138 FGVPLSQLSSSD-----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212 (625)
Q Consensus 138 FG~~L~~l~~~~-----~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l 212 (625)
||++|++++... ..||.++.+|++||+++|+++|||||++|+..+++++++.+++|.. ++++++|+|+||++|
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~--~~~~~~d~h~va~lL 78 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES--PNLEEYEPPTVASLL 78 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC--CCccccChHHHHHHH
Confidence 899999987643 3799999999999999999999999999999999999999999853 566789999999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|.|||+||+||+|+++|+.|.++.+..+ +++.+++.++.+||+.|+.||++|+.||.+|+++++.|+||++|||+|||
T Consensus 79 K~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 158 (182)
T cd04381 79 KQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLS 158 (182)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhC
Confidence 9999999999999999999999887654 78999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137 291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA 329 (625)
Q Consensus 291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~ 329 (625)
|+|+.+ ..+++.||+|+.++|+++
T Consensus 159 P~l~~~---------------~~~~~~li~~~~~if~~~ 182 (182)
T cd04381 159 PTVQIS---------------NRLLYALLTHCQELFGNV 182 (182)
T ss_pred ccccCc---------------HHHHHHHHHHHHHHcCCC
Confidence 999753 368899999999999763
No 20
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-38 Score=307.93 Aligned_cols=189 Identities=31% Similarity=0.584 Sum_probs=172.9
Q ss_pred cceeecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHHHH
Q psy10137 134 GHRVFGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHILA 209 (625)
Q Consensus 134 ~~~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~va 209 (625)
+..+||++|+.+.... ..||.++..|++||+++|+++|||||++|+..+++++++.+|+|+. ++++.+ |+|++|
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~--~~~~~~~d~~~va 79 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEP--VDFDQYEDVHLPA 79 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCC--CCcccccCHHHHH
Confidence 3568999999998744 4799999999999999999999999999999999999999999853 445555 999999
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhh
Q psy10137 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV 288 (625)
Q Consensus 210 ~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaiv 288 (625)
++||.|||+||+||+|.+.|+.++.+.+.++ +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+|
T Consensus 80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 80 VILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999999887654 788999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 289 FAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
|||+|+|++.. ...++++.....++++||+||++||
T Consensus 160 faP~l~~~~~~--~~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDA--SMSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCc--ccCHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999998643 3467899999999999999999987
No 21
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.8e-38 Score=306.48 Aligned_cols=180 Identities=30% Similarity=0.456 Sum_probs=163.1
Q ss_pred CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137 148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE 227 (625)
Q Consensus 148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~ 227 (625)
..+.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....++ +.+|+|+||++||.|||+||+||+|++
T Consensus 5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc-ccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 4558999999999999999999999999999999999999999998644433 457999999999999999999999999
Q ss_pred hHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccC-----------cCCCCccchhhhccccccc
Q psy10137 228 YYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 228 ~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~-----------~NkMt~~nLaivf~P~Llr 295 (625)
+|+.|+.+.+... +++.+++.++.+||+.|+.+|.+|+.||++|+++++ .|+||++|||+||||+|+|
T Consensus 84 ~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 84 LYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999999988765 788999999999999999999999999999999986 7999999999999999999
Q ss_pred cCCCCc------hhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 296 QRHFPA------QDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 296 ~~~~~~------~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
++.... ...+.+...+..+|++||+||..||..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 202 (206)
T cd04376 164 KQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMV 202 (206)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 964332 346778889999999999999999964
No 22
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-38 Score=308.13 Aligned_cols=186 Identities=30% Similarity=0.454 Sum_probs=165.1
Q ss_pred eeccccccccc----CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137 137 VFGVPLSQLSS----SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212 (625)
Q Consensus 137 ~FG~~L~~l~~----~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l 212 (625)
+||++|..+.. ..+.||.++.+|+.||++ |+++|||||+||+..+++++++.+|+|... ...+++|+||++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~---~~~~~~~~vaslL 76 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEAC---LSSALPCDVAGLL 76 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCC---ccccCHHHHHHHH
Confidence 69999999874 245899999999999986 699999999999999999999999998532 2457899999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|.|||+||+||+|+++|+.|+.+.+..+ ++..+++.++.+||+.|+.||.||+.||++|+++++.|+||++|||+|||
T Consensus 77 K~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfa 156 (202)
T cd04394 77 KQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFA 156 (202)
T ss_pred HHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhc
Confidence 9999999999999999999999987664 67788889999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCc---hhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 291 PCILRQRHFPA---QDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 291 P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
|+|+++..... .....++..+..+|++||+|+.+||
T Consensus 157 P~L~~~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~ 195 (202)
T cd04394 157 PNLFQSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIG 195 (202)
T ss_pred ceeecCCCcccccchhHHHhHHHHHHHHHHHHHHHHHHc
Confidence 99999854322 1223467888999999999999887
No 23
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.2e-38 Score=313.40 Aligned_cols=187 Identities=28% Similarity=0.431 Sum_probs=162.3
Q ss_pred eeccccccccc----------------CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC--CCC
Q psy10137 137 VFGVPLSQLSS----------------SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL--PEL 198 (625)
Q Consensus 137 ~FG~~L~~l~~----------------~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~--~~~ 198 (625)
+||++|++... ..+.||.+|.+|+.||+++|+.+|||||++|+..++++|++.|+.|.. ..+
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 58888887654 124799999999999999999999999999999999999999998632 345
Q ss_pred CccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcC-----------------c--hHHHHHHHHHHhhCCHHHHH
Q psy10137 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-----------------T--EDRVSTLFSILKTLPKPNFD 259 (625)
Q Consensus 199 ~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~-----------------~--~~~~~~l~~~l~~LP~~n~~ 259 (625)
+++.+|+|++|++||+|||+||+||+|+++|+.|+.+... . ++++..++.++.+||+.|+.
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~ 160 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQ 160 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHH
Confidence 6678899999999999999999999999999999876531 1 27788999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHH
Q psy10137 260 LMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKK 325 (625)
Q Consensus 260 ~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~i 325 (625)
||.+|+.||++|+++++.||||++|||+||||+|++++..+ ....+...+..+|++||+|+.++
T Consensus 161 ~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~--~~~~~~~~~~~~ve~lI~~~~~~ 224 (225)
T cd04396 161 LLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE--MDPKEYKLSRLVVEFLIEHQDKF 224 (225)
T ss_pred HHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc--cCHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999875422 23445677889999999997654
No 24
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-38 Score=308.44 Aligned_cols=186 Identities=30% Similarity=0.493 Sum_probs=162.8
Q ss_pred ecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCccCc-ChHHHHHHH
Q psy10137 138 FGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELELEVY-SVHILANLL 212 (625)
Q Consensus 138 FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~~~~-d~~~va~~l 212 (625)
||++|+.++..+ +.||.+|.+|++||+++|+.+|||||++|+..++++|++.|++|.. ..++.+.+ |+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 899999998753 3799999999999999999999999999999999999999998642 23333333 899999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch-----HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhh
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE-----DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI 287 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~-----~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLai 287 (625)
|+|||+||+||+|+++|+.|+++..... .+...++.++..||+.|+.||++|+.||++|+.+++.||||+.|||+
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi 160 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV 160 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence 9999999999999999999999876421 34567888999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCc-----------hhhHHhhHHHHHHHHHHHHhhH
Q psy10137 288 VFAPCILRQRHFPA-----------QDALSDISRQTLCIELIISEQL 323 (625)
Q Consensus 288 vf~P~Llr~~~~~~-----------~~~~~~~~~~~~~ve~lI~~~~ 323 (625)
||||+|++++..+. ..+..++...+.++.+||+-|+
T Consensus 161 vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
T cd04379 161 CFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQIWP 207 (207)
T ss_pred hhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHhcC
Confidence 99999999965443 2346688999999999999874
No 25
>KOG3564|consensus
Probab=100.00 E-value=3.4e-38 Score=323.78 Aligned_cols=246 Identities=28% Similarity=0.501 Sum_probs=212.7
Q ss_pred ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccccCCcccccceeeccccccccc-
Q psy10137 69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSS- 147 (625)
Q Consensus 69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L~~l~~- 147 (625)
..+.|.|...++..|.+|.+|++.|.++ .-+++|.+|..+||..|+.+++.+|.+....++..... | -|.+.+.
T Consensus 283 ~mr~htfi~kt~~~~~~Cv~C~krIkfg-~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~ge---g-~L~DF~~s 357 (604)
T KOG3564|consen 283 LMRLHTFISKTVIKPENCVPCGKRIKFG-KLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGE---G-MLADFAPS 357 (604)
T ss_pred ccccchhhHhhccCcccchhhhhhhhhh-hcccccccCCeeechhHHhcCCCCCcCccCCCCCccCc---e-ehhhhccc
Confidence 4567999999999999999999998886 45899999999999999999999998764322221111 1 2444443
Q ss_pred CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137 148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE 227 (625)
Q Consensus 148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~ 227 (625)
..+.||.+|.+|+.+||++||.++||||+||....+++|+++|-+|+. ...+.+.|+|++|+++|+|||+|.+||||+.
T Consensus 358 ~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~LkePLip~~ 436 (604)
T KOG3564|consen 358 TAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLKEPLIPFR 436 (604)
T ss_pred ccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhcccccccch
Confidence 455999999999999999999999999999999999999999999975 4455677999999999999999999999999
Q ss_pred hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccccc--CCCCchh
Q psy10137 228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ--RHFPAQD 303 (625)
Q Consensus 228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~--~~~~~~~ 303 (625)
+..+|+.|+..++ ..+.++...+.+||.+||+||.|||-|+++||+ +..|+|+..|||.+|||+|+.. ++.+...
T Consensus 437 ~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~ 515 (604)
T KOG3564|consen 437 LRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVT 515 (604)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhH
Confidence 9999999998877 667899999999999999999999999999888 5669999999999999999997 3333445
Q ss_pred hHHhhHHHHHHHHHHHHh
Q psy10137 304 ALSDISRQTLCIELIISE 321 (625)
Q Consensus 304 ~~~~~~~~~~~ve~lI~~ 321 (625)
.++|+..|.++++-|++-
T Consensus 516 ~l~dv~~q~rvmkaLlel 533 (604)
T KOG3564|consen 516 MLQDVKTQPRVMKALLEL 533 (604)
T ss_pred HHHhhhhhHHHHHHHHhC
Confidence 688999999999999876
No 26
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.7e-38 Score=303.98 Aligned_cols=175 Identities=24% Similarity=0.433 Sum_probs=156.3
Q ss_pred cccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCC
Q psy10137 141 PLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMP 220 (625)
Q Consensus 141 ~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp 220 (625)
+|.+.+...+.+|.+|.+|+++||++|+++|||||++|+.+ +.++++.|+++. ..++++.+|+|+||++||+|||+||
T Consensus 4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~-~~~d~~~~dv~~va~~LK~ylReLP 81 (200)
T cd04388 4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDA-ASVDLEQFDVAALADALKRYLLDLP 81 (200)
T ss_pred cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCC-CCCCcccccHHHHHHHHHHHHHhCC
Confidence 45555666678999999999999999999999999999876 678999999853 4567788999999999999999999
Q ss_pred CCCCChhhHHHHHHHhcC-c--hHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 221 EPLLTFEYYEEFLRAADL-T--EDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 221 ~pLl~~~~y~~~l~~~~~-~--~~~~~~l~~~l~--~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+|+++|++|++++.. . +++++.++.++. .||+.|+.||+||+.||.+|+++++.|+||++|||+||||+|||
T Consensus 82 ePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r 161 (200)
T cd04388 82 NPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFR 161 (200)
T ss_pred CccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcC
Confidence 999999999999998743 2 278889999997 89999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 296 QRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
++.. +..+...++++||+||.+
T Consensus 162 ~~~~----~~~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 162 FQPA----SSDSPEFHIRIIEVLITS 183 (200)
T ss_pred CCcc----cccchhhHHHHHHHHHHH
Confidence 8643 456678899999999997
No 27
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-37 Score=301.72 Aligned_cols=179 Identities=33% Similarity=0.593 Sum_probs=160.5
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr 217 (625)
||+||.+++..++.||.++.+|+.||+++|+.+|||||++|+..+++++++.+++|....+...++|+|+||++||+|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 89999999998889999999999999999999999999999999999999999997544444456799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+||+|+++|+.|.++.+..+ +++..++.++..||+.|+.||.+|+.||++|+++++.|+||++|||+||||+|+|
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~ 160 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMR 160 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCC
Confidence 99999999999999999987655 6889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 296 QRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
++.. ....+. .+.+++.+|++
T Consensus 161 ~~~~-~~~~~~----~~~~~q~~i~~ 181 (185)
T cd04373 161 PDFT-SMEALS----ATRIYQTIIET 181 (185)
T ss_pred CCCC-CHHHHH----ccHHHHHHHHH
Confidence 8643 223333 55667777776
No 28
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.7e-38 Score=304.96 Aligned_cols=185 Identities=39% Similarity=0.634 Sum_probs=167.8
Q ss_pred ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCC--CC--CccCcChHHHHHHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP--EL--ELEVYSVHILANLL 212 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~--~~--~~~~~d~~~va~~l 212 (625)
||++|++++..++ .||.++.+|+++|+++|+.+|||||++|+..+++++++.+|+|... .. +....|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 8999999987555 8999999999999999999999999999999999999999987421 11 12245999999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|+|||+||+||+|.++|+.|+++.+..+ +++..++.++.+||+.|+.||.+|+.||++|+.+++.|+||++|||+|||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~ 160 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWG 160 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHh
Confidence 9999999999999999999999987765 68899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
|+|++++.. +..++..++.++++||+|+.+||
T Consensus 161 P~l~~~~~~----~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 161 PTLMNAAPD----NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhCCCCcc----chhhHHHHHHHHHHHHHHHHHhC
Confidence 999998542 46788999999999999999887
No 29
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-37 Score=302.82 Aligned_cols=185 Identities=31% Similarity=0.514 Sum_probs=159.6
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr 217 (625)
||.+|.+ .+++ .|.+|++||++ |+++|||||+||+..++++|++.+++|....++..++|+|+||++||+|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 5666643 2334 67789999998 999999999999999999999999998654444456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcC------------c--hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCcc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADL------------T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN 283 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~------------~--~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~ 283 (625)
+||+||+|+++|+.|+.+++. . +.++.+++.++.+||+.|+.+|++|+.||++|+++++.|+||+.
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 153 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD 153 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence 999999999999999887642 1 15578899999999999999999999999999999999999999
Q ss_pred chhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137 284 SLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA 329 (625)
Q Consensus 284 nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~ 329 (625)
|||+||||+|++++..+......++.....+|++||+|+.+||...
T Consensus 154 NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 154 NLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLFKAP 199 (208)
T ss_pred HHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999998655454445677788999999999999999543
No 30
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.6e-37 Score=298.41 Aligned_cols=173 Identities=34% Similarity=0.562 Sum_probs=157.6
Q ss_pred CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137 148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE 227 (625)
Q Consensus 148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~ 227 (625)
....||.++.+|+.+|+++|+.+|||||++|+..+++++++.+++|.. ..+++.+|+|++|++||+|||+||+||+|++
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~-~~~~~~~d~h~vaslLK~fLReLPePLi~~~ 91 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKT-VPNLSKVDIHVICGCLKDFLRSLKEPLITFA 91 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCC-CcccccCCHHHHHHHHHHHHHhCCCcCCCHH
Confidence 344899999999999999999999999999999999999999998752 2245667999999999999999999999999
Q ss_pred hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCC--Cchh
Q psy10137 228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF--PAQD 303 (625)
Q Consensus 228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~--~~~~ 303 (625)
+|+.|+++.+..+ +++..++.++..||+.|+.||.||+.||++|++ ++.|+||+.|||+||||+||+.+.. +..+
T Consensus 92 ~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~~ 170 (193)
T cd04382 92 LWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPMT 170 (193)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHHH
Confidence 9999999987664 677899999999999999999999999999999 9999999999999999999998543 3467
Q ss_pred hHHhhHHHHHHHHHHHHhh
Q psy10137 304 ALSDISRQTLCIELIISEQ 322 (625)
Q Consensus 304 ~~~~~~~~~~~ve~lI~~~ 322 (625)
.+.++..|.++||.||++.
T Consensus 171 ~~~~~~~~~~vve~Li~~~ 189 (193)
T cd04382 171 ILQDTVRQPRVVERLLEIP 189 (193)
T ss_pred HHHHhHHHHHHHHHHHhCC
Confidence 8999999999999999983
No 31
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-36 Score=293.85 Aligned_cols=180 Identities=33% Similarity=0.568 Sum_probs=164.1
Q ss_pred cccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHHHHHHHHHHHH
Q psy10137 139 GVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHILANLLKLFLR 217 (625)
Q Consensus 139 G~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~va~~lK~fLr 217 (625)
|.+|+........||.+|.+|+.||+++|+.+|||||+||+..++++|++.|+.+. ...+..+.+|+|+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 67787777778899999999999999999999999999999999999999998853 22344567899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137 218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295 (625)
Q Consensus 218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr 295 (625)
+||+||+|+++|+.|+.+.+..+ +++..++.++..||+.|+.+|.+|+.||++|+++++.|+|+++|||+||||+|+|
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~ 161 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQ 161 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCC
Confidence 99999999999999999987655 7888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHhhHHHHHHHHHHHHhh
Q psy10137 296 QRHFPAQDALSDISRQTLCIELIISEQ 322 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~ve~lI~~~ 322 (625)
++.. +..+....+++++.||+||
T Consensus 162 ~~~~----~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 162 TDEH----SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCcc----chhHHHHHHHHHHHHHhcC
Confidence 8642 5667889999999999985
No 32
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.7e-37 Score=301.14 Aligned_cols=189 Identities=19% Similarity=0.299 Sum_probs=163.9
Q ss_pred ecccccccccCCC-Cccceeeechhhhhhcc--cccc----cccccCCCHHHHHHHHHHHhcCCCCCC---CccCcChHH
Q psy10137 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRG--IYTE----GIYRKSGIHSKIQELKTKIDEGKLPEL---ELEVYSVHI 207 (625)
Q Consensus 138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~g--l~~e----GIfR~sg~~~~v~~L~~~~~~g~~~~~---~~~~~d~~~ 207 (625)
||+||+.++..++ .||.+|.+|++||+++| +..+ ||||+||+.+.+++||+.|++|..... +++.+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 8999999988765 89999999999999875 3333 999999999999999999999854332 245789999
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHHhcC--------chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcC-
Q psy10137 208 LANLLKLFLREMPEPLLTFEYYEEFLRAADL--------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN- 278 (625)
Q Consensus 208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~--------~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~N- 278 (625)
||++||.|||+||+||+|+++|+.|.++... .++++.+++.++.+||++|+.||++|+.||.+|++++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~ 160 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGE 160 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999876421 2389999999999999999999999999999999987655
Q ss_pred --CCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 279 --RMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 279 --kMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
+|+++|||+||||+|+|+..... ...+...+..+++.||+|+.+||++
T Consensus 161 ~~kM~~~nLa~vfgp~llr~~~~~~--~~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 161 SEEEYADKLATSLSREILRPIIESL--LTIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred ccccCHHHHHHHhhhhhcCCCcccc--cccccHHHHHHHHHHHHhHHHhccc
Confidence 69999999999999999854332 3455688999999999999999975
No 33
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.4e-36 Score=295.25 Aligned_cols=183 Identities=27% Similarity=0.477 Sum_probs=164.0
Q ss_pred eeecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137 136 RVFGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212 (625)
Q Consensus 136 ~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l 212 (625)
++||++|+++...+ ..||.++..|+.||+++|+++|||||++|+..+++++++.+++|....+. ..+|+|++|++|
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~-~~~d~~~va~~l 79 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS-KEADVCSAASLL 79 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc-ccCCHHHHHHHH
Confidence 47999999998753 38999999999999999999999999999999999999999998643322 238999999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCc---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLT---EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 289 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~---~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf 289 (625)
|+|||+||+||+|++.|+.|+++.+.. ++++..++.++..||+.|+.+|.+|+.||++|+++++.|+||+.|||+||
T Consensus 80 K~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 80 RLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 999999999999999999999886532 37788999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 290 APCILRQRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
||+||+.+. ....+.+.....++++.||+|
T Consensus 160 ~P~l~~~~~--~~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYT--DVEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCC--CcccHHHHHHHHHHHHHHhcC
Confidence 999999854 345677788889999999986
No 34
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-36 Score=293.98 Aligned_cols=168 Identities=34% Similarity=0.624 Sum_probs=150.9
Q ss_pred cceeeechhhhhhcccccccccccCCCHHHHHHHHHH-HhcC--CCCCCCcc--CcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTK-IDEG--KLPELELE--VYSVHILANLLKLFLREMPEPLLTFE 227 (625)
Q Consensus 153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~-~~~g--~~~~~~~~--~~d~~~va~~lK~fLr~Lp~pLl~~~ 227 (625)
+.+|.+|++||+++|+.+|||||+||+..+++++++. ++.+ ....+++. .+|+|+||++||+|||+||+||+|++
T Consensus 29 ~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~ 108 (203)
T cd04374 29 FKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYE 108 (203)
T ss_pred HHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHH
Confidence 5578999999999999999999999999999999875 5654 22344443 47999999999999999999999999
Q ss_pred hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhH
Q psy10137 228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL 305 (625)
Q Consensus 228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~ 305 (625)
+|+.|+.+.+..+ +++.+++.++..||++|+.||++|+.||++|+++++.|+||+.|||+||||+|+|++.. ...++
T Consensus 109 ~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~-~~~~~ 187 (203)
T cd04374 109 LHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE-TVAAI 187 (203)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc-cHHHH
Confidence 9999999988764 78899999999999999999999999999999999999999999999999999998643 34568
Q ss_pred HhhHHHHHHHHHHHHh
Q psy10137 306 SDISRQTLCIELIISE 321 (625)
Q Consensus 306 ~~~~~~~~~ve~lI~~ 321 (625)
.++..+..+|++||+|
T Consensus 188 ~~~~~~~~vve~LIeN 203 (203)
T cd04374 188 MDIKFQNIVVEILIEN 203 (203)
T ss_pred HHhHHHHHHhhhHhcC
Confidence 8999999999999987
No 35
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.7e-36 Score=289.68 Aligned_cols=178 Identities=30% Similarity=0.435 Sum_probs=158.2
Q ss_pred ecccccccccC------CCCccceeeechhhhh-hcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137 138 FGVPLSQLSSS------DGKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN 210 (625)
Q Consensus 138 FG~~L~~l~~~------~~~vP~vl~~~i~~ie-~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~ 210 (625)
||++|++++.. +..||.++..|++++. .+|+.+|||||++|+..+++++++.+|+|+... ....|+|++|+
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~ 78 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPAS 78 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHH
Confidence 89999998742 2379999999999985 579999999999999999999999999986432 23469999999
Q ss_pred HHHHHHHhCCCCCCChhhHHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcc--CcCCCCccchhhh
Q psy10137 211 LLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIV 288 (625)
Q Consensus 211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~--~~NkMt~~nLaiv 288 (625)
+||.|||+||+||+|+++|+.|+.+.+. .+.+++++.+||+.|+.+|.||+.||++|++++ +.||||++|||+|
T Consensus 79 lLK~fLReLpePli~~~~~~~~i~~~~~----~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv 154 (187)
T cd04389 79 LLKLWLRELEEPLIPDALYQQCISASED----PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV 154 (187)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhcC----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 9999999999999999999999987643 235678899999999999999999999999754 7899999999999
Q ss_pred ccccccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137 289 FAPCILRQRHFPAQDALSDISRQTLCIELIISE 321 (625)
Q Consensus 289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~ 321 (625)
|||+|+|++..++...++++.++..+++.||+|
T Consensus 155 f~P~l~~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 155 FAPNILRCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HccccCCCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 999999997777778899999999999999986
No 36
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.6e-36 Score=289.65 Aligned_cols=177 Identities=31% Similarity=0.467 Sum_probs=158.0
Q ss_pred eecccccccccC------CCCccceeeechhhhhhcc-cccccccccCCCHHHHHHHHHHHhcCCCCCCC--ccCcChHH
Q psy10137 137 VFGVPLSQLSSS------DGKVPSLVDRLITTIELRG-IYTEGIYRKSGIHSKIQELKTKIDEGKLPELE--LEVYSVHI 207 (625)
Q Consensus 137 ~FG~~L~~l~~~------~~~vP~vl~~~i~~ie~~g-l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~--~~~~d~~~ 207 (625)
+||++|++++.. +..||.+|.+|++||+++| +.+|||||++|+...++++++.+++|...... .+.+|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 699999998753 3489999999999999987 79999999999999999999999997432211 13579999
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCc-h--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137 208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS 284 (625)
Q Consensus 208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~-~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n 284 (625)
||++||.|||+||+||+|+++|+.|..+.+.. + +++.+++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 99999999999999999999999999988754 2 78899999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 285 LAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 285 Laivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
||+||||+|+++. .++..+|++|..||++
T Consensus 161 La~vf~P~L~~~~---------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 161 VCIVFSPTLNIPA---------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred hhhhcCCCCCCCH---------------HHHHHHHHHHHHHcCC
Confidence 9999999998752 3788999999999976
No 37
>KOG1453|consensus
Probab=100.00 E-value=3.3e-36 Score=351.12 Aligned_cols=294 Identities=31% Similarity=0.579 Sum_probs=230.6
Q ss_pred CCcCeeEEehhhhhhHH-HHhhhcCCCccccCCCCcchhhhhhhhhhhhhhhhcccccccCCCeeceeEecc--CCcccc
Q psy10137 12 RDFPVTMGVNAFRGFMN-EFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINI--PTACEI 88 (625)
Q Consensus 12 ~~~~~~~~~n~f~~~l~-~f~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~~~~~~~~~~~~H~F~~~~~~~--pt~C~~ 88 (625)
...|.....|+||+..+ ..|... ++..++....|...++ +. .+......+.| .|..+.+.. |+.|..
T Consensus 492 ~~~~g~~s~~l~r~~~~~~~~~~~--~~~~d~~~~~k~~~~~-----~~--~~~~~~~~~sg-~~~~~~r~~~~P~~c~~ 561 (918)
T KOG1453|consen 492 SRSPGALSRGLFRVSGFSSTIESK--KNAFDRKGQSKKDASP-----NV--HKSKEVNLHSG-ALKHYLRSLRKPAPCRT 561 (918)
T ss_pred cCCCCcccccccccCCccccccch--hhccCccccchhccCC-----Cc--cccccchhccC-cchhhhhcccCCccccc
Confidence 35777778888888874 233222 1222111111111111 01 11223445666 666666666 999999
Q ss_pred cccccccccccccccccccccccccccccccccccccccCCcccccceeeccccccccc-CCCCccceeeechhhhhhcc
Q psy10137 89 CNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSS-SDGKVPSLVDRLITTIELRG 167 (625)
Q Consensus 89 C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L~~l~~-~~~~vP~vl~~~i~~ie~~g 167 (625)
|+.+.|+ + +..|..|.++||++|..++...|+..... + ...||..|..++. ....||.++.+|+.+|+.+|
T Consensus 562 c~~~~~~-~--~~~c~~c~~~chkkc~~~~~~~~~~~~l~--~---~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~ 633 (918)
T KOG1453|consen 562 CETYSWF-M--ELECELCRLVCHKKCLEALKSLCGHERLP--G---RPLFGVSLSELARYEPSTVPFILKKCLREIEAHL 633 (918)
T ss_pred ccccchh-h--hcccceeeeeccccchhhccccCcccccc--c---cccccHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Confidence 9998554 3 39999999999999999999999977632 1 2299999999998 44599999999999999999
Q ss_pred cccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--H----
Q psy10137 168 IYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--D---- 241 (625)
Q Consensus 168 l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~---- 241 (625)
+.++||||++|..++++.|...|+.|. ..+.+.+.|+|++++|+|+|||+||+||+++.+|+.|+.+.+... +
T Consensus 634 lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~ 712 (918)
T KOG1453|consen 634 LRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRS 712 (918)
T ss_pred hhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhccccccccccc
Confidence 999999999999999999999999976 557778899999999999999999999999999999999998832 4
Q ss_pred --HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHH
Q psy10137 242 --RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII 319 (625)
Q Consensus 242 --~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI 319 (625)
.+..+..++..||++|+.+|++|+.||.||+.+++.|+|++.|||+||||||+|+++ +..++.++......+++++
T Consensus 713 ~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d--~~~~~~~~~~~~y~~~~~l 790 (918)
T KOG1453|consen 713 TEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPD--GTRDLTDMKDKNYPLAAQL 790 (918)
T ss_pred cccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCC--CcchhhhhccchhhHHHhc
Confidence 788999999999999999999999999999999999999999999999999999964 3344444444444466666
Q ss_pred HhhHHHh
Q psy10137 320 SEQLKKL 326 (625)
Q Consensus 320 ~~~~~if 326 (625)
.++..++
T Consensus 791 ~~~~~~~ 797 (918)
T KOG1453|consen 791 PEYKITL 797 (918)
T ss_pred chHHHHH
Confidence 6654444
No 38
>KOG4407|consensus
Probab=99.98 E-value=5.2e-33 Score=309.69 Aligned_cols=196 Identities=30% Similarity=0.535 Sum_probs=176.4
Q ss_pred ccceeeccccccccc--CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCc--cCc-ChH
Q psy10137 133 HGHRVFGVPLSQLSS--SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELEL--EVY-SVH 206 (625)
Q Consensus 133 ~~~~~FG~~L~~l~~--~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~--~~~-d~~ 206 (625)
.+.++|||+|.+... .+..||.+|+.|+..+|.+||.+.||||++|+...|.+|++.++.++. ..++. +.| |++
T Consensus 1153 ~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1153 APQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred CcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence 455699999998765 344899999999999999999999999999999999999999998632 12221 122 899
Q ss_pred HHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137 207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS 284 (625)
Q Consensus 207 ~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n 284 (625)
||.++||.|||.|||||+|.++|..|+++.+..+ +|+..|+.+|..||++||+||++|+.||.+|+.|+++|||-+.|
T Consensus 1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprN 1312 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRN 1312 (1973)
T ss_pred HHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999999999999999999998776 99999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 285 LAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 285 Laivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
|||+|||+|+|++++.....+.+|..|.+|||.||.++.-.|.+
T Consensus 1313 LAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI~~~dwfF~e 1356 (1973)
T KOG4407|consen 1313 LAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLIHYNDWFFDE 1356 (1973)
T ss_pred eeEEeccceeccCCccHHHHhhcchhhhhHHHHHHhhhhheecc
Confidence 99999999999987777778899999999999999997666654
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.98 E-value=6.6e-32 Score=259.52 Aligned_cols=170 Identities=44% Similarity=0.740 Sum_probs=155.9
Q ss_pred CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHH
Q psy10137 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE 230 (625)
Q Consensus 151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~ 230 (625)
.||.++..|+.||+++|+++|||||++|+..+++++++.+++|.........+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999986444346788999999999999999999999999999
Q ss_pred HHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhh
Q psy10137 231 EFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI 308 (625)
Q Consensus 231 ~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~ 308 (625)
.|+.+.+..+ ++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++... .....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~-~~~~~~~ 160 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE-VASLKDI 160 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-HHHHHHH
Confidence 9999887543 788999999999999999999999999999999999999999999999999999996533 2357889
Q ss_pred HHHHHHHHHHHHh
Q psy10137 309 SRQTLCIELIISE 321 (625)
Q Consensus 309 ~~~~~~ve~lI~~ 321 (625)
.....++++||+|
T Consensus 161 ~~~~~~i~~li~~ 173 (174)
T smart00324 161 RHQNTVVETLIEN 173 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999987
No 40
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=3.8e-31 Score=262.94 Aligned_cols=163 Identities=23% Similarity=0.421 Sum_probs=138.0
Q ss_pred CccceeeechhhhhhcccccccccccCCCHHH----HHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCCh
Q psy10137 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTF 226 (625)
Q Consensus 151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~----v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~ 226 (625)
.||.++.+|++||+++|+.+|||||++|+... ++++++.+|+|.... ...|+|++|++||.|||+||+||+|+
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~ 125 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPY 125 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCH
Confidence 79999999999999999999999999999999 999999999985332 56799999999999999999999999
Q ss_pred hhHHHHHHHhcCchHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCch-hh
Q psy10137 227 EYYEEFLRAADLTEDRVSTLFSILK-TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ-DA 304 (625)
Q Consensus 227 ~~y~~~l~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~-~~ 304 (625)
++|+.|+.+.... ...+..++. .||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++..... ..
T Consensus 126 ~~y~~~~~~~~~~---~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~~~~ 202 (220)
T cd04380 126 SLYERLLEAVANN---EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGGKER 202 (220)
T ss_pred HHHHHHHHHhcCc---HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccchhHH
Confidence 9999999987322 234667888 999999999999999999999999999999999999999999999653332 11
Q ss_pred HHhhHHHHHHHHHHH
Q psy10137 305 LSDISRQTLCIELII 319 (625)
Q Consensus 305 ~~~~~~~~~~ve~lI 319 (625)
........++++..|
T Consensus 203 ~~~~~~~~~~i~~fl 217 (220)
T cd04380 203 RAERDRKRAFIEQFL 217 (220)
T ss_pred HHHHHHHHHHHHHHh
Confidence 223334444444443
No 41
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=2.3e-30 Score=247.08 Aligned_cols=167 Identities=43% Similarity=0.737 Sum_probs=152.8
Q ss_pred cceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHH
Q psy10137 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF 232 (625)
Q Consensus 153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~ 232 (625)
|.++..|+.||+++|+.++||||++|+..+++++++.++.|.... ....+|+|++|+++|.|||+||+||+|.+.|+.|
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 789999999999999999999999999999999999999985432 4567899999999999999999999999999999
Q ss_pred HHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHH
Q psy10137 233 LRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310 (625)
Q Consensus 233 l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~ 310 (625)
+.+.+..+ .++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+ .....+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~-~~~~~~~~~ 158 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD-DELLEDIKK 158 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc-HHHHHHhHH
Confidence 99987544 788999999999999999999999999999999999999999999999999999986533 455778899
Q ss_pred HHHHHHHHHHh
Q psy10137 311 QTLCIELIISE 321 (625)
Q Consensus 311 ~~~~ve~lI~~ 321 (625)
+..++++||.|
T Consensus 159 ~~~~~~~li~~ 169 (169)
T cd00159 159 LNEIVEFLIEN 169 (169)
T ss_pred HHHHHHHHHhC
Confidence 99999999975
No 42
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=99.97 E-value=1.9e-30 Score=251.58 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=135.6
Q ss_pred CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCC-CcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137 358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYY 436 (625)
Q Consensus 358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePLi~~~l~ 436 (625)
|+.+...+-.+.. .+|+.+|||||++|+.++++++++.+|+|.+... +.+.+|+|+||++||.|||+||+||||.++|
T Consensus 18 IP~~v~~~i~~l~-~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~ 96 (188)
T cd04383 18 IPLVVESCIRFIN-LYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERF 96 (188)
T ss_pred CChHHHHHHHHHH-HcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4444433333333 2589999999999999999999999999875422 2356799999999999999999999999999
Q ss_pred HHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHH
Q psy10137 437 EEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESEL 514 (625)
Q Consensus 437 ~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~ 514 (625)
+.|+.+.+.. ++++..++.++..||+.|+.+|+||+.||++|+++++.|+||++|||+||||+|++.+++...-....
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~~~~~~~~ 176 (188)
T cd04383 97 EDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQVSCQA 176 (188)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCCccHHHHHH
Confidence 9999987754 47889999999999999999999999999999999999999999999999999999876554333233
Q ss_pred HHHHHHHHh
Q psy10137 515 AIHSKIQEL 523 (625)
Q Consensus 515 ~~~~~I~~l 523 (625)
.+..+++.+
T Consensus 177 ~~~~~~~~l 185 (188)
T cd04383 177 HVNELIKTI 185 (188)
T ss_pred HHHHHHHHH
Confidence 444444433
No 43
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.97 E-value=2.7e-30 Score=249.88 Aligned_cols=134 Identities=38% Similarity=0.682 Sum_probs=123.6
Q ss_pred cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137 372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR 449 (625)
Q Consensus 372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~ 449 (625)
.+|+.+|||||++|+.+++++|++.++.|.. .++.+++|+|+||++||.|||+||+||||+++|++|+.+.+.. .++
T Consensus 28 ~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~-~~~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~~~~~~~~ 106 (186)
T cd04407 28 MHGLYTEGIYRKSGSANRMKELHQLLQADPE-NVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQ 106 (186)
T ss_pred HcCCCCCceeecCCCHHHHHHHHHHHhcCCc-ccCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCHHHH
Confidence 3689999999999999999999999998853 3456678999999999999999999999999999999988764 367
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
+.+++.++..||+.|+.+|++|+.||++|+++++.|+|+++|||+||||+|+|+++.
T Consensus 107 ~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~ 163 (186)
T cd04407 107 LQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDS 163 (186)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCCC
Confidence 899999999999999999999999999999999999999999999999999998754
No 44
>KOG2200|consensus
Probab=99.97 E-value=2.9e-30 Score=272.27 Aligned_cols=197 Identities=30% Similarity=0.490 Sum_probs=175.4
Q ss_pred cccccceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHH
Q psy10137 130 ARSHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHI 207 (625)
Q Consensus 130 ~~~~~~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~ 207 (625)
+.+....+|||||..++...+ .+|.+|.+.+.||+++|++++||||+||.+.+|+.|++.++... ...+.++....|+
T Consensus 293 ~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~D 372 (674)
T KOG2200|consen 293 VDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHD 372 (674)
T ss_pred CccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhH
Confidence 445677899999999998766 99999999999999999999999999999999999999998732 1237788889999
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccch
Q psy10137 208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 285 (625)
Q Consensus 208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nL 285 (625)
+|.+||+|||+||+||+|.++-+.|+.+..... +++++++.+|-.||.+||++|+.|+.||++|+.+++.|+||+.||
T Consensus 373 vAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nl 452 (674)
T KOG2200|consen 373 VADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNL 452 (674)
T ss_pred HHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhh
Confidence 999999999999999999999999999998776 899999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCC-----------------CchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137 286 AIVFAPCILRQRHF-----------------PAQDALSDISRQTLCIELIISEQLKKL 326 (625)
Q Consensus 286 aivf~P~Llr~~~~-----------------~~~~~~~~~~~~~~~ve~lI~~~~~if 326 (625)
|+||||+||..... +....+.+......++..||.++...|
T Consensus 453 svcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf 510 (674)
T KOG2200|consen 453 SVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLF 510 (674)
T ss_pred hhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876211 113346677788889999999987766
No 45
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=99.97 E-value=3.6e-30 Score=248.98 Aligned_cols=148 Identities=34% Similarity=0.581 Sum_probs=128.9
Q ss_pred CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHH
Q psy10137 358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE 437 (625)
Q Consensus 358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~ 437 (625)
++.+...+..+.. .+|+.+||+||++|+.+++++|++.+|.|.. ..+++++|+|+||++||.|||+||+||||.++|+
T Consensus 15 iP~ii~~~i~~l~-~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~-~~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~ 92 (186)
T cd04406 15 VPLVVEKLINYIE-MHGLYTEGIYRKSGSTNKIKELRQGLDTDAN-SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYE 92 (186)
T ss_pred CCcHHHHHHHHHH-HhCCCCCceeeCCCcHHHHHHHHHHHccCCC-CCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 4444333333332 3689999999999999999999999998753 3456678999999999999999999999999999
Q ss_pred HHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 438 EFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 438 ~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
.|+++.... .+++..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++.++..
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~~~ 164 (186)
T cd04406 93 EFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTT 164 (186)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCCCC
Confidence 999998764 3678899999999999999999999999999999999999999999999999999987644
No 46
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=4.6e-30 Score=251.31 Aligned_cols=153 Identities=27% Similarity=0.457 Sum_probs=132.2
Q ss_pred cCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137 355 LKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE 434 (625)
Q Consensus 355 ~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~ 434 (625)
...++.+...+-.+.. .+|+++|||||++|+..++++|++.+++|.. .++++++|+|+||++||.|||+||+||||++
T Consensus 13 ~~~vP~iv~~ci~~i~-~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fLReLPePLi~~~ 90 (200)
T cd04408 13 PEEVPFVVVRCTAEIE-NRALGVQGIYRISGSKARVEKLCQAFENGRD-LVDLSGHSPHDITSVLKHFLKELPEPVLPFQ 90 (200)
T ss_pred CCCCChHHHHHHHHHH-HcCCCCcceeeCCCcHHHHHHHHHHHhcCCC-ccCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 3445555555554443 3699999999999999999999999999864 3455678999999999999999999999999
Q ss_pred hHHHHHHHhcc--------------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccc
Q psy10137 435 YYEEFLRAADL--------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500 (625)
Q Consensus 435 l~~~~~~~~~~--------------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~l 500 (625)
+|+.|+++++. .++++.+++.++..||+.|+.+|.||+.||++|+++++.|+|++.|||+||||+|
T Consensus 91 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~L 170 (200)
T cd04408 91 LYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTL 170 (200)
T ss_pred HHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhcccc
Confidence 99999987642 1357899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q psy10137 501 KTKIDEGKL 509 (625)
Q Consensus 501 l~~~~~~~~ 509 (625)
|+++.+...
T Consensus 171 l~~~~~~~~ 179 (200)
T cd04408 171 LRPLVGGDV 179 (200)
T ss_pred CCCCCCCch
Confidence 998876543
No 47
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=5.7e-30 Score=251.65 Aligned_cols=133 Identities=32% Similarity=0.444 Sum_probs=121.8
Q ss_pred cccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--------
Q psy10137 374 QIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-------- 445 (625)
Q Consensus 374 ~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~-------- 445 (625)
|+.+|||||++|+.+++++|++.+|+|...++...++|+|+||++||.|||+||+||||.++|+.|+.+++.
T Consensus 23 gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~ 102 (208)
T cd04392 23 NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGN 102 (208)
T ss_pred CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhhccccccc
Confidence 889999999999999999999999999876666567899999999999999999999999999999876542
Q ss_pred ------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 446 ------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 446 ------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
.+.++.+++.++..||+.||.+|+||+.||++|+++++.|+||+.|||+||||+|++++..
T Consensus 103 ~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~ 169 (208)
T cd04392 103 KTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNL 169 (208)
T ss_pred ccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCC
Confidence 1356789999999999999999999999999999999999999999999999999997653
No 48
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=9.5e-30 Score=253.43 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=130.6
Q ss_pred CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC--CCCCcCCcchhHHHHHHHHHHhcCCCCCCCh
Q psy10137 356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL--PELELEVYSVHILANLLKLFLREMPEPLLTF 433 (625)
Q Consensus 356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~--~~~~~~~~d~~~va~lLK~flr~LpePLi~~ 433 (625)
+.|+.+...+..+.. -+|+.+|||||++|+..++++|++.||++.. ..++++++|+|+||++||+|||+||+||||.
T Consensus 30 ~~IP~iv~~ci~~l~-~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~ 108 (225)
T cd04396 30 GYIPVVVAKCGVYLK-ENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPL 108 (225)
T ss_pred CCCChHHHHHHHHHH-HCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCH
Confidence 345555545544443 3689999999999999999999999999752 3466678899999999999999999999999
Q ss_pred hhHHHHHHHhcc-------------------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccc
Q psy10137 434 EYYEEFLRAADL-------------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI 494 (625)
Q Consensus 434 ~l~~~~~~~~~~-------------------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 494 (625)
++|++|..+... .++++..++.++.+||+.|+.+|.||+.||++|+++++.||||++|||+
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 188 (225)
T cd04396 109 DLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAA 188 (225)
T ss_pred HHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhhe
Confidence 999999876431 2467889999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCC
Q psy10137 495 VFAQELKTKIDEGK 508 (625)
Q Consensus 495 ~faP~ll~~~~~~~ 508 (625)
||||+|++++++..
T Consensus 189 vfaP~Ll~~~~~~~ 202 (225)
T cd04396 189 IFQPGILSHPDHEM 202 (225)
T ss_pred eeccccCCCCcccc
Confidence 99999999876543
No 49
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=8.6e-30 Score=246.45 Aligned_cols=151 Identities=25% Similarity=0.362 Sum_probs=131.6
Q ss_pred CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137 356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY 435 (625)
Q Consensus 356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l 435 (625)
.+|+.+...+-.+..+ +|+.+||+||++|+..+++++++.+++|...++...++|+|+||++||+|||+||+||||+++
T Consensus 13 ~~IP~~l~~~i~~l~~-~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLreLPePlip~~~ 91 (185)
T cd04373 13 KPIPIFLEKCVEFIEA-TGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSM 91 (185)
T ss_pred CCCCcHHHHHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHhcCCchhccHHH
Confidence 3444443333333333 789999999999999999999999999876666556779999999999999999999999999
Q ss_pred HHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 436 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 436 ~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
|+.|.++.... ++++..++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++..++
T Consensus 92 ~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~~ 165 (185)
T cd04373 92 HLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTS 165 (185)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCCC
Confidence 99999988764 3688999999999999999999999999999999999999999999999999999976553
No 50
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=99.96 E-value=7.6e-30 Score=248.94 Aligned_cols=135 Identities=27% Similarity=0.576 Sum_probs=122.6
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCC-CCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-LPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED 448 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~ 448 (625)
+|+.+|||||++|+.++++++++.+|++. ..+++...+ |+|+||++||.|||+||+||||.++|+.|+++.+.. ++
T Consensus 30 ~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~ 109 (194)
T cd04372 30 RGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDE 109 (194)
T ss_pred cCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHH
Confidence 68999999999999999999999999853 344443333 899999999999999999999999999999988764 47
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
+++.++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+||||+|++++++.
T Consensus 110 ~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~ 168 (194)
T cd04372 110 RLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDS 168 (194)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999987754
No 51
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.2e-29 Score=246.23 Aligned_cols=135 Identities=36% Similarity=0.580 Sum_probs=124.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCc-CCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELEL-EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR 449 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~-~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~ 449 (625)
+|+.+||+||++|+.+++++|+..+|.|...+++. ...|+|+||++||.|||+||+||||+++|+.|+++.+.. +++
T Consensus 30 ~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~ 109 (187)
T cd04403 30 RGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQR 109 (187)
T ss_pred hCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHH
Confidence 58999999999999999999999999987654432 345999999999999999999999999999999988764 478
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
+.+++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|++.+.
T Consensus 110 i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~ 167 (187)
T cd04403 110 VSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQET 167 (187)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999987665
No 52
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.96 E-value=1.3e-29 Score=244.71 Aligned_cols=145 Identities=30% Similarity=0.425 Sum_probs=130.8
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+.+||+||++|+.+++++|++.+++|... +++++|+|+||++||.|||+||+||||.++|+.|.++++.. ++++
T Consensus 34 ~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~--~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~ 111 (182)
T cd04381 34 HGMKCEGIYKVSGIKSKVDELKAAYNRRESP--NLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAERE 111 (182)
T ss_pred hCCCCCceeecCCcHHHHHHHHHHHcCCCCC--CccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHH
Confidence 5899999999999999999999999998754 45678999999999999999999999999999999988754 4789
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhcc
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKID 528 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~d 528 (625)
.+++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+. +...+...|.++.+.|.
T Consensus 112 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~---------~~~~~~~li~~~~~if~ 180 (182)
T cd04381 112 QELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQI---------SNRLLYALLTHCQELFG 180 (182)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccC---------cHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999986 34566666776666654
No 53
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.96 E-value=1.7e-29 Score=244.39 Aligned_cols=132 Identities=23% Similarity=0.372 Sum_probs=120.0
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR 449 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~ 449 (625)
+|+.++||||++|+.+ +.+|++.+|++. ..++++.+|+|+||++||.|||+||+||||+++|++|+++++. .+++
T Consensus 29 ~GL~~eGIYRvsgs~~-~~~lk~~~d~~~-~~~d~~~~dv~~va~~LK~ylReLPePLip~~~y~~fi~~~~~~~~~~~~ 106 (200)
T cd04388 29 KGLESSTLYRTQSSSS-LTELRQILDCDA-ASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEY 106 (200)
T ss_pred hCCCCCceeeCCCccH-HHHHHHHHhcCC-CCCCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHccCCHHHH
Confidence 5999999999999875 789999999963 3456678899999999999999999999999999999998753 3578
Q ss_pred HHHHHHHHh--hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 450 VSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 450 ~~~~~~li~--~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
++.++.++. .||+.|+.+|+||+.||++|+++++.|+||++|||+||||+||+++.+
T Consensus 107 ~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~ 165 (200)
T cd04388 107 AQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPA 165 (200)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcc
Confidence 899999997 899999999999999999999999999999999999999999998754
No 54
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.8e-29 Score=247.77 Aligned_cols=135 Identities=33% Similarity=0.484 Sum_probs=124.5
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-hHHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVS 451 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-~~~~~ 451 (625)
+|+++||+||++|+.+++++|++.+|+|....++ +.+|+|+||++||.|||+||+||+|+++|+.|+.+.... ++++.
T Consensus 23 ~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~~~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~~~~~~~~ 101 (206)
T cd04376 23 HGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLE 101 (206)
T ss_pred cCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999999999999999999999866554 457999999999999999999999999999999988764 57889
Q ss_pred HHHHHHhhCChhhHHHHHHHHHHHHHHHhccc-----------ccCCcccccccccccccccccCCCC
Q psy10137 452 TLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVFAQELKTKIDEGK 508 (625)
Q Consensus 452 ~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~-----------~NkM~~~nLa~~faP~ll~~~~~~~ 508 (625)
+++.++..||+.|+.+|.||+.||++|+++++ .|+||++|||+||||+|++++..+.
T Consensus 102 ~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~ 169 (206)
T cd04376 102 ALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGE 169 (206)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCCCcc
Confidence 99999999999999999999999999999986 7999999999999999999876543
No 55
>KOG1451|consensus
Probab=99.96 E-value=4.9e-30 Score=268.95 Aligned_cols=174 Identities=33% Similarity=0.570 Sum_probs=158.0
Q ss_pred ceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhc-CCCCCCC---ccCcChHHHHHHHHHHHHhCCCCCCChhhH
Q psy10137 154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE-GKLPELE---LEVYSVHILANLLKLFLREMPEPLLTFEYY 229 (625)
Q Consensus 154 ~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~-g~~~~~~---~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y 229 (625)
.+|.+||..||.+|++++|+||..|...+|++|...+-. ......+ ++.||+-+|++.||.|||.||+||+|++++
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 578899999999999999999999999999999875543 2222333 256899999999999999999999999999
Q ss_pred HHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHh
Q psy10137 230 EEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307 (625)
Q Consensus 230 ~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~ 307 (625)
..|+.|++.++ -|+.+++.++.+||.-||.+|+.||+||.+|+.|+..|.||..||++||||+|+|+.. ...++++|
T Consensus 470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE-ETVAAiMd 548 (812)
T KOG1451|consen 470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE-ETVAAIMD 548 (812)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH-HHHHHHHc
Confidence 99999999887 7999999999999999999999999999999999999999999999999999999964 46688999
Q ss_pred hHHHHHHHHHHHHhhHHHhhh
Q psy10137 308 ISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 308 ~~~~~~~ve~lI~~~~~if~d 328 (625)
+..|+-+||.||+||.+||.-
T Consensus 549 IKFQNIVVEILIEnyeKIF~t 569 (812)
T KOG1451|consen 549 IKFQNIVVEILIENYEKIFKT 569 (812)
T ss_pred chhhhhhHHHHHhhhHHHhcC
Confidence 999999999999999999943
No 56
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.1e-29 Score=244.34 Aligned_cols=151 Identities=28% Similarity=0.483 Sum_probs=128.2
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCc--CCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELEL--EVYSVHILANLLKLFLREMPEPLLTFE 434 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~--~~~d~~~va~lLK~flr~LpePLi~~~ 434 (625)
.++.+...+..+.. .+|+ .|||||++|+.+++++|++.+|+|...++.. ...|+|+||++||.|||+||+||||++
T Consensus 17 ~iP~il~~~i~~l~-~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~ 94 (195)
T cd04384 17 DVPQVLKSCTEFIE-KHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQ 94 (195)
T ss_pred CCChHHHHHHHHHH-HcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHhCCCccCCHH
Confidence 34444433333332 2455 5899999999999999999999997655432 345999999999999999999999999
Q ss_pred hHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137 435 YYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL 509 (625)
Q Consensus 435 l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~ 509 (625)
+|+.|+++.+.. +++++.++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+||||+|++++.....
T Consensus 95 ~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~~~ 171 (195)
T cd04384 95 LYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESA 171 (195)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccccc
Confidence 999999998753 478899999999999999999999999999999999999999999999999999998865544
No 57
>KOG1450|consensus
Probab=99.96 E-value=1.2e-29 Score=275.66 Aligned_cols=192 Identities=29% Similarity=0.499 Sum_probs=170.4
Q ss_pred ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCC-CccCcChHHHHHHH
Q psy10137 135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLL 212 (625)
Q Consensus 135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~-~~~~~d~~~va~~l 212 (625)
..+||++|+.++...+ .||.+|..|++.||.+|++.+||||++|+...|++|+..+|......+ +....|+|+|+++|
T Consensus 454 ~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~gal 533 (650)
T KOG1450|consen 454 DKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGAL 533 (650)
T ss_pred CcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHHH
Confidence 5799999999998555 999999999999999999999999999999999999999995321111 22224899999999
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137 213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 290 (625)
Q Consensus 213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~ 290 (625)
|.|||+||+||++..+...|..+....+ .+....+.++..||.+|+.||++|++||++|..|++.|||+.+|||||||
T Consensus 534 K~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfg 613 (650)
T KOG1450|consen 534 KTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFG 613 (650)
T ss_pred HHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEec
Confidence 9999999999999999999999998765 78899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137 291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA 327 (625)
Q Consensus 291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~ 327 (625)
|+|+.+... ......++.++.++|+.||++...+|+
T Consensus 614 pTl~~~~~~-~~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 614 PTLIKPEQE-TSSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred ccccccccc-ccchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 999997432 334456788999999999999887774
No 58
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.6e-29 Score=245.42 Aligned_cols=136 Identities=29% Similarity=0.408 Sum_probs=120.9
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h-
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E- 447 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~- 447 (625)
+|+.+|||||++|+.+++++|++.+|++.. .+++.+.+ |+|+||++||.|||+||+||||+++|+.|++++... +
T Consensus 32 ~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~ 111 (207)
T cd04379 32 RGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPND 111 (207)
T ss_pred cCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhh
Confidence 689999999999999999999999999753 34444333 899999999999999999999999999999987642 1
Q ss_pred --HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508 (625)
Q Consensus 448 --~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~ 508 (625)
.+...++.++..||+.|+.+|+||+.||++|+++++.||||++|||+||||+||++++...
T Consensus 112 ~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~~ 174 (207)
T cd04379 112 VQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEFS 174 (207)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCcccc
Confidence 3456788899999999999999999999999999999999999999999999999887664
No 59
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.96 E-value=3.4e-29 Score=243.26 Aligned_cols=134 Identities=31% Similarity=0.481 Sum_probs=122.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+.+|||||++|+.++++++++.+++|... .+++.+|+|+||++||.|||+||+||||.++|+.|+++++.. ++++
T Consensus 31 ~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~~~d~h~vaslLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~ 109 (193)
T cd04382 31 RGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSR 109 (193)
T ss_pred cCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccccCCHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHcCCHHHHH
Confidence 6899999999999999999999999988643 234566999999999999999999999999999999998764 4678
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~ 508 (625)
..++.++..||+.|+.+|.||+.||++|++ ++.|+||++|||+||||+||+.+..+.
T Consensus 110 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~ 166 (193)
T cd04382 110 AALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP 166 (193)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc
Confidence 899999999999999999999999999999 999999999999999999999775543
No 60
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=99.96 E-value=1.7e-29 Score=246.00 Aligned_cols=150 Identities=30% Similarity=0.440 Sum_probs=130.1
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEY 435 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l 435 (625)
.|+.+...+..+..+ +|+.+|||||++|+.+++++|++.+|+|... ..+.+.+|+|+||++||.|||+||+||||+++
T Consensus 15 ~IP~iv~~ci~~l~~-~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~ 93 (196)
T cd04387 15 KVPYIVRQCVEEVER-RGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDEL 93 (196)
T ss_pred CCChHHHHHHHHHHH-hCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 355555444444433 5899999999999999999999999998643 23456779999999999999999999999999
Q ss_pred HHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 436 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 436 ~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
|+.|+++.... ++++.+++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++...
T Consensus 94 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~ 167 (196)
T cd04387 94 YPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKE 167 (196)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCccc
Confidence 99999987654 4678899999999999999999999999999999999999999999999999999987644
No 61
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.7e-29 Score=241.94 Aligned_cols=150 Identities=29% Similarity=0.397 Sum_probs=129.6
Q ss_pred CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137 356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFE 434 (625)
Q Consensus 356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~d~~~va~lLK~flr~LpePLi~~~ 434 (625)
..++.+...+-.+.. .+|++++|+||.+|+.+++++|++.++.+.. ..+..+.+|+|+||++||.|||+||+||||++
T Consensus 13 ~~iP~~v~~~i~~l~-~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~ 91 (184)
T cd04385 13 NDIPVIVDKCIDFIT-QHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSE 91 (184)
T ss_pred CCCChHHHHHHHHHH-HhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 344444333333332 3689999999999999999999999998652 33456778999999999999999999999999
Q ss_pred hHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 435 YYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 435 l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
+|+.|+++.+.. ++++..++.++..||+.|+.+|.+|+.||++|+++++.|+|+++|||+||||+||+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~ 165 (184)
T cd04385 92 LHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH 165 (184)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence 999999998764 478899999999999999999999999999999999999999999999999999998765
No 62
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.96 E-value=5.6e-29 Score=244.04 Aligned_cols=134 Identities=30% Similarity=0.534 Sum_probs=122.4
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc----chH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL----TED 448 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~----~~~ 448 (625)
+|+++||+||++|+.+++++|++.+|+|...+++ ..+|+|+||++||.|||+||+||+|.+.|+.|+.+.+. .++
T Consensus 36 ~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~ 114 (199)
T cd04390 36 HGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEK 114 (199)
T ss_pred cCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHH
Confidence 5899999999999999999999999999866554 45799999999999999999999999999999988654 235
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
++..++.++..||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+|+|+..++
T Consensus 115 ~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~ 173 (199)
T cd04390 115 GLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVED 173 (199)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCC
Confidence 67889999999999999999999999999999999999999999999999999976543
No 63
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=4.4e-29 Score=244.01 Aligned_cols=135 Identities=32% Similarity=0.534 Sum_probs=120.3
Q ss_pred ccccCCCCCCCCcccchHHHHHHH-hccCC--CCCCCc--CCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTK-IDEGK--LPELEL--EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~-l~~~~--~~~~~~--~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~- 446 (625)
+|+.+|||||++|+.++++++++. ++.+. ..++++ +.+|+|+||++||+|||+||+||||+++|+.|+.+++..
T Consensus 42 ~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~~~ 121 (203)
T cd04374 42 RGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFINAAKSEN 121 (203)
T ss_pred cCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhCCC
Confidence 589999999999999999999875 66552 223333 357999999999999999999999999999999998764
Q ss_pred -hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 447 -~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
++++.+++.++..||+.|+.+|++|+.||++|+++++.|||+++|||+||||+|++++.+.
T Consensus 122 ~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~ 183 (203)
T cd04374 122 LESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET 183 (203)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence 4789999999999999999999999999999999999999999999999999999987653
No 64
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.3e-29 Score=248.38 Aligned_cols=135 Identities=24% Similarity=0.382 Sum_probs=123.6
Q ss_pred cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHH
Q psy10137 372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR 449 (625)
Q Consensus 372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~ 449 (625)
.+|+.+|||||++|+.+++++|++.+|++.. ..+++.+++|+||++||+|||+||+||||.++|+.|+.+.+. .+++
T Consensus 33 ~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~-~~~~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~ 111 (220)
T cd04375 33 NNALDQVGLFRKSGVKSRIQKLRSMIESSTD-NVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQR 111 (220)
T ss_pred HhCCCccceeecCCcHHHHHHHHHHHhcCCC-ccCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHH
Confidence 4689999999999999999999999998743 235567799999999999999999999999999999998765 3578
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
+++++.++..||++||.+|++|+.||++|+++++.|+||++|||+||||+||+.....
T Consensus 112 ~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~~~ 169 (220)
T cd04375 112 LEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNTSR 169 (220)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999987654
No 65
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=7.7e-29 Score=243.73 Aligned_cols=157 Identities=29% Similarity=0.464 Sum_probs=133.2
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR 449 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~ 449 (625)
+|+.+||+||++|+.++++++++.+|+|... +.....+|+|+||++||.|||+||+||+|.++|+.|+.+++.. +++
T Consensus 34 ~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~ 113 (203)
T cd04386 34 TGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDER 113 (203)
T ss_pred cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHH
Confidence 5889999999999999999999999998743 2333456999999999999999999999999999999998764 368
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc--------hhHHHHHHHHH
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP--------ESELAIHSKIQ 521 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~--------~~~~~~~~~I~ 521 (625)
+..++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.++... .....+...|.
T Consensus 114 ~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~ 193 (203)
T cd04386 114 LQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIIS 193 (203)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999988764221 12334445555
Q ss_pred HhHhhccc
Q psy10137 522 ELKTKIDE 529 (625)
Q Consensus 522 ~l~~~~d~ 529 (625)
++...|++
T Consensus 194 ~~~~iF~~ 201 (203)
T cd04386 194 HADWFFPG 201 (203)
T ss_pred hHHHhCCC
Confidence 55555544
No 66
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.96 E-value=6.7e-29 Score=243.89 Aligned_cols=134 Identities=33% Similarity=0.537 Sum_probs=122.5
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc------
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT------ 446 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~------ 446 (625)
+|+.+|||||++|+.+++++|++.+++|.. .++++++|+|+||++||+|||+||+||+|+++|+.|+.++...
T Consensus 30 ~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~-~~~~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~e~ 108 (203)
T cd04378 30 RALGVQGIYRVSGSKARVEKLCQAFENGKD-LVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEE 108 (203)
T ss_pred cCCCCccceeCCCcHHHHHHHHHHHhcCCC-ccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccc
Confidence 599999999999999999999999999863 3456678999999999999999999999999999999876421
Q ss_pred ----------hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 447 ----------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 447 ----------~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
.+++..++.++..||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+||+++.+.
T Consensus 109 ~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~~ 179 (203)
T cd04378 109 DKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGD 179 (203)
T ss_pred cccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCCC
Confidence 2467899999999999999999999999999999999999999999999999999988764
No 67
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=8.3e-29 Score=241.26 Aligned_cols=133 Identities=30% Similarity=0.440 Sum_probs=123.8
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+..||+||++|+.++++++++.+|+|... +++++|+|++|++||+|||+||+||+|++.|+.|+.+++.. ++++
T Consensus 29 ~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i 106 (192)
T cd04402 29 KGPSTEGIFRRSANAKACKELKEKLNSGVEV--DLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKI 106 (192)
T ss_pred hCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHH
Confidence 4789999999999999999999999998754 45678999999999999999999999999999999987754 4688
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
..++.++.+||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+||+++.+.
T Consensus 107 ~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~ 163 (192)
T cd04402 107 AELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASS 163 (192)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCcc
Confidence 999999999999999999999999999999999999999999999999999988764
No 68
>KOG4269|consensus
Probab=99.96 E-value=2.4e-29 Score=274.28 Aligned_cols=185 Identities=33% Similarity=0.510 Sum_probs=155.8
Q ss_pred ccccceeecccccccc----cCC-CCccceeeechhhhh-hcccccccccccCCCHHHHHHHHHHHhcCCCCCC--CccC
Q psy10137 131 RSHGHRVFGVPLSQLS----SSD-GKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL--ELEV 202 (625)
Q Consensus 131 ~~~~~~~FG~~L~~l~----~~~-~~vP~vl~~~i~~ie-~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~--~~~~ 202 (625)
......+||.++...+ ..+ .++|.||.+|++||| .||+..|||||++|++..|+.|++.||.|-..++ ..+.
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 3455679996655433 233 389999999999999 7999999999999999999999999999721222 2356
Q ss_pred cChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q psy10137 203 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM 280 (625)
Q Consensus 203 ~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkM 280 (625)
.|||+|||+||.|||+||+||++-+.|..|.......+ .+.-.+..+|.+||++|..++.+|+.||.||+.++.+|||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 79999999999999999999999999999999988776 6677899999999999999999999999999999999999
Q ss_pred CccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137 281 TPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL 330 (625)
Q Consensus 281 t~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~ 330 (625)
+.+||++||||+|.+|.. +...+|-|+..||.|..
T Consensus 1053 nlrNlciVFsPTLniPse---------------~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPSE---------------IESKLILNYDHIFTDVM 1087 (1112)
T ss_pred cccceeeeecccccCcHH---------------hhhhhccchhhhhccch
Confidence 999999999999999742 23345666666665443
No 69
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=9.9e-29 Score=244.38 Aligned_cols=135 Identities=27% Similarity=0.360 Sum_probs=122.9
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+.+|||||++|+..++++|++.+|+|.....+++.+++|+||++||.|||+||+||+|.++|+.|+.+.+.. +++.
T Consensus 41 ~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~ 120 (213)
T cd04397 41 MDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERK 120 (213)
T ss_pred cCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHH
Confidence 58999999999999999999999999987555566677999999999999999999999999999999987753 4678
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhccc-----ccCCcccccccccccccccccCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----ANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~-----~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
..++.++..||+.|+.+|+||+.||++|+.++. .||||++|||+||||+|++++.+.
T Consensus 121 ~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~ 182 (213)
T cd04397 121 RVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDN 182 (213)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCC
Confidence 889999999999999999999999999998764 599999999999999999987665
No 70
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=9.3e-29 Score=243.93 Aligned_cols=149 Identities=30% Similarity=0.451 Sum_probs=126.9
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY 436 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~ 436 (625)
.|+.+...+-.+.. .+|+.+|||||++|+.+++++|++.||+|.. .++.+++|+|+||++||.|||+||+||||.++|
T Consensus 15 ~iP~il~~ci~~ie-~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~~LK~fLReLPePLi~~~~~ 92 (211)
T cd04409 15 GIPFIIKKCTSEIE-SRALCLKGIYRVNGAKSRVEKLCQAFENGKD-LVELSELSPHDISNVLKLYLRQLPEPLILFRLY 92 (211)
T ss_pred CCCcHHHHHHHHHH-HcCCCCCCeeECCCcHHHHHHHHHHHHcCCC-ccccccCCHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 34544444444432 3699999999999999999999999999874 245567899999999999999999999999999
Q ss_pred HHHHHHhccc------------------------hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccc
Q psy10137 437 EEFLRAADLT------------------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 492 (625)
Q Consensus 437 ~~~~~~~~~~------------------------~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 492 (625)
+.|++++... +.++.+++.++..||+.|+.+|+||+.||++|+++++.|+||++||
T Consensus 93 ~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 172 (211)
T cd04409 93 NEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNL 172 (211)
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHh
Confidence 9999876421 0135688999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCC
Q psy10137 493 AIVFAQELKTKIDEG 507 (625)
Q Consensus 493 a~~faP~ll~~~~~~ 507 (625)
|+||||+|++++.+.
T Consensus 173 Aivf~P~Llrp~~~~ 187 (211)
T cd04409 173 GIIFGPTLIRPRPTD 187 (211)
T ss_pred hhhccccccCCCCCC
Confidence 999999999987554
No 71
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.96 E-value=1.9e-28 Score=238.31 Aligned_cols=135 Identities=24% Similarity=0.348 Sum_probs=123.9
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR 449 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~ 449 (625)
+|+..||+||++|+..+++++++.+|+|...++. ..+|+|++|++||+|||+||+||||.+.|+.|+++++. .+++
T Consensus 34 ~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~-~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~ 112 (189)
T cd04393 34 HGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS-KEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEF 112 (189)
T ss_pred cCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHH
Confidence 6999999999999999999999999999765544 34799999999999999999999999999999998754 3467
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~ 508 (625)
+..++.++..||+.|+.+|.||+.||++|+++++.|+||+.|||+||||+||+.+.+..
T Consensus 113 ~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~~ 171 (189)
T cd04393 113 GRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTDVE 171 (189)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCCcc
Confidence 88999999999999999999999999999999999999999999999999999877644
No 72
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.4e-28 Score=243.96 Aligned_cols=135 Identities=28% Similarity=0.426 Sum_probs=124.4
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR 449 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~ 449 (625)
+|+.+|||||++|+.+++++|++.++++... .++++.+|+|+||++||.|||+||+||+|.++|+.|..+.+.+ +++
T Consensus 36 ~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~ 115 (216)
T cd04391 36 RGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQ 115 (216)
T ss_pred cCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999999999999987542 5667778999999999999999999999999999999987764 367
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
+.+++.++..||+.|+.+|+||+.||++|++|++.||||++|||+||||+||++...+
T Consensus 116 ~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~ 173 (216)
T cd04391 116 LQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKH 173 (216)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999976644
No 73
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.96 E-value=1.8e-28 Score=237.69 Aligned_cols=134 Identities=44% Similarity=0.737 Sum_probs=124.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+.++|+||.+|+.++++++++.+|+|. ..++++.+|+|+||++||+|||+||+||+|+++|++|+.+.+.. .+++
T Consensus 29 ~g~~~eGiFR~~g~~~~i~~l~~~l~~~~-~~~~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i 107 (186)
T cd04377 29 HGLYTEGIYRKSGSANKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERV 107 (186)
T ss_pred cCCCCCceeeCCCCHHHHHHHHHHHhCCC-cccCcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHhcCCHHHHH
Confidence 68899999999999999999999999984 24566788999999999999999999999999999999988764 3688
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
..++.++..||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++++.
T Consensus 108 ~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~~ 164 (186)
T cd04377 108 RALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTA 164 (186)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999987553
No 74
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.8e-28 Score=240.35 Aligned_cols=131 Identities=28% Similarity=0.400 Sum_probs=120.3
Q ss_pred cccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHHH
Q psy10137 374 QIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS 451 (625)
Q Consensus 374 ~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~~ 451 (625)
++.+|||||++|+.+++++|++.+|+|.... ..+++|+||++||.|||+||+||+|.++|+.|+.+.+.+ +++..
T Consensus 34 ~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~---~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~ 110 (202)
T cd04394 34 HLSTEGLFRKSGSVVRQKELKAKLEGGEACL---SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKS 110 (202)
T ss_pred CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc---cccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHH
Confidence 6889999999999999999999999987432 356899999999999999999999999999999987664 46788
Q ss_pred HHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 452 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 452 ~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
+++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+||++..+.
T Consensus 111 ~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~~~ 166 (202)
T cd04394 111 ATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEGG 166 (202)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCCcc
Confidence 89999999999999999999999999999999999999999999999999987653
No 75
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=4.9e-29 Score=233.79 Aligned_cols=146 Identities=41% Similarity=0.725 Sum_probs=133.4
Q ss_pred cceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHH
Q psy10137 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF 232 (625)
Q Consensus 153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~ 232 (625)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|.......+.+|+|++|++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 78899999999999999999999999999999999999998644326778999999999999999999999999999999
Q ss_pred HHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCC
Q psy10137 233 LRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH 298 (625)
Q Consensus 233 l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~ 298 (625)
+.+.+..+ ++++.++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~ 148 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPS 148 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGST
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCc
Confidence 98776654 7889999999999999999999999999999999999999999999999999999854
No 76
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=2.8e-28 Score=238.42 Aligned_cols=138 Identities=30% Similarity=0.553 Sum_probs=124.1
Q ss_pred cccccCCCCCCCCcccchHHHHHHHhccCCCC-CC-CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h
Q psy10137 372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-EL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 447 (625)
Q Consensus 372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~-~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~ 447 (625)
.+|+++||+||.+|+..++++|++.+|+|... +. +.+.+|+|+||++||.|||+||+||||.+.|++|+.+.+.+ +
T Consensus 31 ~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~ 110 (196)
T cd04395 31 ARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPV 110 (196)
T ss_pred HcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHH
Confidence 46899999999999999999999999998742 22 22346999999999999999999999999999999987653 4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL 509 (625)
Q Consensus 448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~ 509 (625)
+++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|+|+++++..
T Consensus 111 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~~~~ 172 (196)
T cd04395 111 ERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNME 172 (196)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCCCCCCCHH
Confidence 78899999999999999999999999999999999999999999999999999998776543
No 77
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=4.5e-28 Score=235.79 Aligned_cols=164 Identities=24% Similarity=0.304 Sum_probs=138.9
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCC--cCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELE--LEVYSVHILANLLKLFLREMPEPLLTFE 434 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~--~~~~d~~~va~lLK~flr~LpePLi~~~ 434 (625)
.++.+...+..+.....++.+||+||++|+.+++++|++.+++|.+.++. .+.+|+|+||++||.|||+||+||||.+
T Consensus 21 ~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~ 100 (190)
T cd04400 21 DLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGE 100 (190)
T ss_pred CCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHHHHHHHHHHHHhCCcccCCHH
Confidence 45555555544444445688999999999999999999999998654321 2357999999999999999999999999
Q ss_pred hHHHHHHHhccc---hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCch
Q psy10137 435 YYEEFLRAADLT---EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPE 511 (625)
Q Consensus 435 l~~~~~~~~~~~---~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~ 511 (625)
+|+.|..+.+.. ++++..++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|||+||||+|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~--------- 171 (190)
T cd04400 101 LHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNI--------- 171 (190)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCC---------
Confidence 999999887653 47889999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHhHhhccc
Q psy10137 512 SELAIHSKIQELKTKIDE 529 (625)
Q Consensus 512 ~~~~~~~~I~~l~~~~d~ 529 (625)
+...+...|..+-..|+.
T Consensus 172 ~~~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 172 PAGIFVLFLTDFDCIFGG 189 (190)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 355677777777776654
No 78
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=4.4e-28 Score=234.64 Aligned_cols=145 Identities=25% Similarity=0.303 Sum_probs=124.0
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY 436 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~ 436 (625)
.++.+...+..+..+.+|+.+|||||++|+.++++++++.+|+|.... ....|+|++|++||.|||+||+||+|.++|
T Consensus 20 ~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~lLK~fLReLpePli~~~~~ 97 (187)
T cd04389 20 KLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPASLLKLWLRELEEPLIPDALY 97 (187)
T ss_pred CCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 455555555445556689999999999999999999999999986432 234599999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcc--cccCCcccccccccccccccccCCC
Q psy10137 437 EEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~--~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
++|+.+.+. .+.+++++.+||+.|+.+|.||+.||++|++++ +.||||++|||+||||+|++++.++
T Consensus 98 ~~~i~~~~~----~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~ 166 (187)
T cd04389 98 QQCISASED----PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDD 166 (187)
T ss_pred HHHHHhhcC----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCC
Confidence 999987653 345678899999999999999999999999754 7899999999999999999976554
No 79
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=1.2e-27 Score=234.08 Aligned_cols=148 Identities=30% Similarity=0.490 Sum_probs=129.0
Q ss_pred CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhh
Q psy10137 357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEY 435 (625)
Q Consensus 357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l 435 (625)
.++.+...+..+..+ +|+.+||+||.+|+.++++++++.+|+|...+ ++.+ |+|++|++||.|||+||+||+|.++
T Consensus 22 ~iP~il~~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~~LK~~lr~Lp~pLi~~~~ 98 (195)
T cd04404 22 PIPPVVRETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGEPVD--FDQYEDVHLPAVILKTFLRELPEPLLTFDL 98 (195)
T ss_pred CCChHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCC--cccccCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 344444333334444 78999999999999999999999999987544 3444 9999999999999999999999999
Q ss_pred HHHHHHHhccc-hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 436 YEEFLRAADLT-EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 436 ~~~~~~~~~~~-~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
|+.|+.+.+.+ ++++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|+++..
T Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~ 171 (195)
T cd04404 99 YDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDAS 171 (195)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcc
Confidence 99999987654 4788999999999999999999999999999999999999999999999999999987664
No 80
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=1.5e-27 Score=232.93 Aligned_cols=134 Identities=34% Similarity=0.534 Sum_probs=121.3
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCC-C-C--CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-E-L--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 446 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~-~--~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-- 446 (625)
+|+++||+||++|+..+++++++.+|+|... + . +....|+|+||++||.|||+||+||+|.++|+.|+++.+..
T Consensus 30 ~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~ 109 (192)
T cd04398 30 FGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDE 109 (192)
T ss_pred hCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCH
Confidence 5899999999999999999999999998631 1 1 12345999999999999999999999999999999987764
Q ss_pred hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
++++..++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.+
T Consensus 110 ~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~ 169 (192)
T cd04398 110 SRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPD 169 (192)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCcc
Confidence 368899999999999999999999999999999999999999999999999999998765
No 81
>KOG4270|consensus
Probab=99.94 E-value=2.8e-27 Score=256.95 Aligned_cols=165 Identities=36% Similarity=0.599 Sum_probs=145.4
Q ss_pred cccceeecccccccccCCC----Cccceeeechh-hh-hhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcCh
Q psy10137 132 SHGHRVFGVPLSQLSSSDG----KVPSLVDRLIT-TI-ELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSV 205 (625)
Q Consensus 132 ~~~~~~FG~~L~~l~~~~~----~vP~vl~~~i~-~i-e~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~ 205 (625)
.....+||+.+..+-.... .||.++..... .+ .+.|+..|||||+.|...+++.+|+++|.|..+... ..||
T Consensus 141 s~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDv 218 (577)
T KOG4270|consen 141 SASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDV 218 (577)
T ss_pred cchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCH
Confidence 4556799998887654222 46888877777 55 557899999999999999999999999998644332 5799
Q ss_pred HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCcc
Q psy10137 206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN 283 (625)
Q Consensus 206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~ 283 (625)
|++||+||.||||||+|++|+++|++|+.++...+ ++.+.++.++.+||+.|+..|.|++.||+.|++++++||||++
T Consensus 219 H~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 219 HCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 99999999999999999999999999998887654 8899999999999999999999999999999999999999999
Q ss_pred chhhhccccccccCC
Q psy10137 284 SLAIVFAPCILRQRH 298 (625)
Q Consensus 284 nLaivf~P~Llr~~~ 298 (625)
|||+||||+|++..+
T Consensus 299 NlAiV~gPNl~~~~~ 313 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKD 313 (577)
T ss_pred hceeEecCCccccCC
Confidence 999999999999865
No 82
>KOG4406|consensus
Probab=99.94 E-value=1.7e-27 Score=243.13 Aligned_cols=192 Identities=30% Similarity=0.549 Sum_probs=174.5
Q ss_pred ccceeecccccccccCC---CCccceeeechhhhhhcc-cccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHH
Q psy10137 133 HGHRVFGVPLSQLSSSD---GKVPSLVDRLITTIELRG-IYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHI 207 (625)
Q Consensus 133 ~~~~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~g-l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~ 207 (625)
.+.+.||++|..+.... +.+|.+|..|+.++..+| +.+||+||.|++.+.+.++.+..++|. .++++.+ |+|.
T Consensus 249 l~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~--pVdle~~~~~h~ 326 (467)
T KOG4406|consen 249 LPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGE--PVDLEVYKDLHA 326 (467)
T ss_pred CchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCC--cccHHHhccchh
Confidence 44568999999987743 489999999999999999 999999999999999999999999995 5677777 4999
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHhccCcCCCCccch
Q psy10137 208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKT-LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 285 (625)
Q Consensus 208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~-LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nL 285 (625)
.|.++|.|||+||+||+|+++|+......+.+. ++...+.++++. ||+.|+.++++++.+|.+|++|+..|+||+.||
T Consensus 327 ~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNL 406 (467)
T KOG4406|consen 327 PAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNL 406 (467)
T ss_pred hHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccc
Confidence 999999999999999999999999988888775 888999999987 999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 286 AIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 286 aivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
|+||||+|+|++. ...++.++..-..+.+++|+||.++|..
T Consensus 407 a~vfGpnl~w~~~--~s~tl~q~npin~F~~~li~~~~~~f~~ 447 (467)
T KOG4406|consen 407 AVVFGPNLLWAQD--ESLTLKQINPINKFTKFLIEHYKKLFTT 447 (467)
T ss_pred eeeeccccccccc--ccccHHHhccHHHHHHHHHHhhhhccCC
Confidence 9999999999863 4456778888899999999999998843
No 83
>KOG4724|consensus
Probab=99.94 E-value=5.5e-27 Score=250.33 Aligned_cols=437 Identities=20% Similarity=0.246 Sum_probs=318.0
Q ss_pred cccceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHH
Q psy10137 132 SHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL 211 (625)
Q Consensus 132 ~~~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~ 211 (625)
..+...||++|..++...+ .|..+..++-++-..|..++||||..++...++++++.+++|. .+.++...++++|.+
T Consensus 77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv--~v~l~~~~i~v~a~v 153 (741)
T KOG4724|consen 77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGV--DVGLKSGEIVVDAAV 153 (741)
T ss_pred CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccc--cccccccceEEeehh
Confidence 3456799999999998777 9999999999999999999999999999999999999999994 556667789999999
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137 212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 289 (625)
Q Consensus 212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf 289 (625)
+|.|||.+|.-++++++|+.|..+....+ +++.+++++..+||++|..+|.+|...| -|..++++|.|+..|||+|+
T Consensus 154 ~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 154 DKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 99999999999999999999999987665 8999999999999999999999999999 89999999999999999999
Q ss_pred cccccccCCCCchhhHHh-hHHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhcc
Q psy10137 290 APCILRQRHFPAQDALSD-ISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSA 368 (625)
Q Consensus 290 ~P~Llr~~~~~~~~~~~~-~~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~ 368 (625)
+|++++.........-.+ ..+..-.++|+|.|+..|||+
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln~kv~~l~~flI~nclrifGe---------------------------------------- 272 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLNGKVPPLPIFLIVNCLRIFGE---------------------------------------- 272 (741)
T ss_pred cchhcccccccChhhhccccCCCCCceeeehhhhHHhhcc----------------------------------------
Confidence 999999843222211111 123334678889997777633
Q ss_pred ccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCC--CCCChhhHHHHHHHhcc-
Q psy10137 369 NTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPE--PLLTFEYYEEFLRAADL- 445 (625)
Q Consensus 369 ~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~Lpe--PLi~~~l~~~~~~~~~~- 445 (625)
+-+|+||+....+..+++...++.|.. |...++.|..++.+|.|+|+.|. |.++-.+...+-.+...
T Consensus 273 -------~i~~~fr~~s~~s~~~e~~sd~s~~q~---Ds~yds~~~~~~~~~~~~~S~p~kqp~v~matlS~ld~ahs~d 342 (741)
T KOG4724|consen 273 -------DIEGIFRKSSKQSTFKELKSDLSKGQV---DSHYDSTHVLASILKEYLRSIPGKQPVVCMATLSGLDSAHSQD 342 (741)
T ss_pred -------cccceeecccccccchhhhhhhccccc---cccccccchhhhhhhhhcccccccCchhHHHHhhcCCcccchh
Confidence 335899999999999999999998864 44455789999999999999995 44431111111111100
Q ss_pred ----chHH----HHHHHH-HHhhCChhhH--HHHHHHHHHHHHHHhcccccCCccccccccccc--------------cc
Q psy10137 446 ----TEDR----VSTLFS-ILKTLPKPNF--DLMERLIFHLARVAYHEEANRMTPNSLAIVFAQ--------------EL 500 (625)
Q Consensus 446 ----~~~~----~~~~~~-li~~Lp~~n~--~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP--------------~l 500 (625)
..+- ...++. .+...|++.+ ...--++.+|.+=..++.-.+|.-.--|.-++| .=
T Consensus 343 ~rn~es~i~v~t~~~lk~ha~laspdp~y~~~sip~sie~lrsHrr~s~pg~s~~ds~ap~tspa~e~~l~kv~fdaPlS 422 (741)
T KOG4724|consen 343 ARNVESEIIVSTVARLKSHAFLASPDPRYSEPSIPSSIECLRSHRRNSTPGKSEGDSPAPRTSPALESELAKVPFDAPLS 422 (741)
T ss_pred hccccccceeeecccccccccccCCCccccccccchhHHHHHHHHHhcCcccccccCcccccchhhhhhhhhCcCCCchh
Confidence 0000 000000 0112233222 223345556666666555444443333322222 22
Q ss_pred ccccCCCCCchhHHHHHHHHH---------------------HhHhhc--ccCCcccchhhhhhHHHHHHHHHHHHhcCC
Q psy10137 501 KTKIDEGKLPESELAIHSKIQ---------------------ELKTKI--DEGKLPELELEVYSVHILANLLKLFLREMP 557 (625)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~I~---------------------~l~~~~--d~~~~~~l~~e~~~~~~ia~~lk~f~~~~p 557 (625)
..+.+.++.+.+..+....+. ...+.- +......++.+...+|.++.++|+|.+.+|
T Consensus 423 ~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~taasv~KdfnRKtp 502 (741)
T KOG4724|consen 423 VFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTAASVHKDFNRKTP 502 (741)
T ss_pred hcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHHHHHHHHhhhhcC
Confidence 233344556655543222220 000000 011123455566789999999999999999
Q ss_pred CCcccHHhHHHHHhhcCCc--hHHHHHHHH--------HHhhCCCCcHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q psy10137 558 EPLLTFEYYEEFLRAADLT--EDRVSTLFS--------ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622 (625)
Q Consensus 558 ~~l~~~~l~~~~l~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~i~~~~~~~~~~~~~~ 622 (625)
..+++.+++.+|.++.+.. +++..++++ ..++.|+.+.-......-..+.+..++..+.||..|+
T Consensus 503 Rgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~ 577 (741)
T KOG4724|consen 503 RGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNP 577 (741)
T ss_pred CCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccccccccccc
Confidence 9999999999999999985 789999999 9999999988777777777777888888888888774
No 84
>KOG2200|consensus
Probab=99.94 E-value=4.9e-27 Score=247.91 Aligned_cols=181 Identities=26% Similarity=0.302 Sum_probs=147.5
Q ss_pred ccccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h
Q psy10137 371 RIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 447 (625)
Q Consensus 371 rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~ 447 (625)
|-+|++++||||++|.+++|+.||+.++...+. .++|+....|+||++||+|||+||+||||.++.+.|..+++.. +
T Consensus 328 r~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkk 407 (674)
T KOG2200|consen 328 RERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKK 407 (674)
T ss_pred HHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHH
Confidence 447999999999999999999999999986543 4788888999999999999999999999999999999999985 4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhc
Q psy10137 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKI 527 (625)
Q Consensus 448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~ 527 (625)
+++++++.+|..||++||++|+.|+.||++|+.+++.|+||+.|||+||||+||+...-...+ +...+..+....+..-
T Consensus 408 qrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l~~~~~d~-spr~~~~k~~~g~p~~ 486 (674)
T KOG2200|consen 408 QRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHLNALKLDS-SPRVRQKKSETGKPDQ 486 (674)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhhccCCCCC-CccccccccccCCCch
Confidence 899999999999999999999999999999999999999999999999999999976544332 2222222222222221
Q ss_pred ccCCcccchhhhhhHHHHHHHHHHHH
Q psy10137 528 DEGKLPELELEVYSVHILANLLKLFL 553 (625)
Q Consensus 528 d~~~~~~l~~e~~~~~~ia~~lk~f~ 553 (625)
.+ ..+.+.+..+..|+|..+-++|-
T Consensus 487 ke-l~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 487 KE-LNEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 12244556677888888888774
No 85
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.94 E-value=1.7e-26 Score=227.73 Aligned_cols=151 Identities=20% Similarity=0.285 Sum_probs=124.5
Q ss_pred CCCCCCCcccchHHHHHHHhccCCCCCC---CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--------c
Q psy10137 378 SKPKPFPQIHSKIQELKTKIDEGKLPEL---ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--------T 446 (625)
Q Consensus 378 ~gifR~~G~~~~i~~L~~~l~~~~~~~~---~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--------~ 446 (625)
.|+||.+|+.+++++||+.+++|...+. +++.+|+|+||++||.|||+||+||||+++|+.|.++... .
T Consensus 41 ~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~ 120 (212)
T cd04399 41 RNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSD 120 (212)
T ss_pred eeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCH
Confidence 4999999999999999999999875543 2457899999999999999999999999999999876422 3
Q ss_pred hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhccccc---CCcccccccccccccccccCCCCCch----hHHHHHHH
Q psy10137 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN---RMTPNSLAIVFAQELKTKIDEGKLPE----SELAIHSK 519 (625)
Q Consensus 447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~N---kM~~~nLa~~faP~ll~~~~~~~~~~----~~~~~~~~ 519 (625)
++++++++.++..||++|+.+|++|+.||.+|+.++..| +|+++|||+||||+++|+..+...+. ....+..+
T Consensus 121 ~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~L 200 (212)
T cd04399 121 TARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDL 200 (212)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHH
Confidence 589999999999999999999999999999999987666 69999999999999999876653321 12334444
Q ss_pred HHHhHhhcc
Q psy10137 520 IQELKTKID 528 (625)
Q Consensus 520 I~~l~~~~d 528 (625)
|.++-+.|+
T Consensus 201 i~~~~~iF~ 209 (212)
T cd04399 201 LTHKDQIFS 209 (212)
T ss_pred HHhHHHhcc
Confidence 444444443
No 86
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.93 E-value=6.4e-26 Score=217.93 Aligned_cols=136 Identities=40% Similarity=0.644 Sum_probs=126.0
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~~ 450 (625)
+|+.++|+||.+|+.++++++++.+++|...+.....+|+|++|++||.|||+||+||+|.+.|+.|+.+++. .++++
T Consensus 17 ~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~ 96 (174)
T smart00324 17 RGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERL 96 (174)
T ss_pred cCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHH
Confidence 6889999999999999999999999999866544678899999999999999999999999999999998875 34788
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~ 508 (625)
..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+++++...
T Consensus 97 ~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~ 154 (174)
T smart00324 97 RALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV 154 (174)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence 9999999999999999999999999999999999999999999999999999877654
No 87
>KOG2710|consensus
Probab=99.93 E-value=5.1e-26 Score=238.17 Aligned_cols=180 Identities=31% Similarity=0.500 Sum_probs=159.1
Q ss_pred CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC---CCCCCccCcChHHHHHHHHHHHHhCCCCCC
Q psy10137 148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK---LPELELEVYSVHILANLLKLFLREMPEPLL 224 (625)
Q Consensus 148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~---~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl 224 (625)
..+.||.+|.+|+.|++++|+.+.||||+.|+..++++|++.|+++- ....+++++++|++|++||.|||+||+||+
T Consensus 90 ~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLL 169 (412)
T KOG2710|consen 90 GEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLL 169 (412)
T ss_pred cceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccC
Confidence 34489999999999999999999999999999999999999999963 345678899999999999999999999999
Q ss_pred ChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcC-----------CCCccchhhhccc
Q psy10137 225 TFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN-----------RMTPNSLAIVFAP 291 (625)
Q Consensus 225 ~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~N-----------kMt~~nLaivf~P 291 (625)
|.++|+.|+..+.+.. +++..++.++..||+.|++||.+|+.+|+-++.+++.| +|++.|||+||+|
T Consensus 170 P~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P 249 (412)
T KOG2710|consen 170 PLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGP 249 (412)
T ss_pred CHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcc
Confidence 9999999999998764 78999999999999999999999999999999999988 9999999999999
Q ss_pred ccccc---CCC--Cc--hhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137 292 CILRQ---RHF--PA--QDALSDISRQTLCIELIISEQLKKLA 327 (625)
Q Consensus 292 ~Llr~---~~~--~~--~~~~~~~~~~~~~ve~lI~~~~~if~ 327 (625)
.|+.. +.. +. .........+..+++.+++|+..+|.
T Consensus 250 ~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 250 NILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred hhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhc
Confidence 99983 111 11 11223455778899999999988887
No 88
>KOG4270|consensus
Probab=99.93 E-value=8.4e-26 Score=245.42 Aligned_cols=156 Identities=31% Similarity=0.443 Sum_probs=133.4
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~~ 450 (625)
.|++.|||||+.|..++++.||+.||.|..+... ..|+|++|++||.||||||+|++++++|++|+.+++. ++++.
T Consensus 181 ~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~ 258 (577)
T KOG4270|consen 181 GGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKV 258 (577)
T ss_pred cCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHH
Confidence 5999999999999999999999999999865443 5699999999999999999999999999999987665 45889
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh----HHHHHHHHHHhHhh
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES----ELAIHSKIQELKTK 526 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~----~~~~~~~I~~l~~~ 526 (625)
+.++.++..||+.|+.+|.|++.||.+|+++++.||||++|||+||||+|+|..++...-.. ...+..+|..+.+.
T Consensus 259 q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie~~l~~ 338 (577)
T KOG4270|consen 259 QLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIEKTLEE 338 (577)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998875433222 23334445555555
Q ss_pred cccC
Q psy10137 527 IDEG 530 (625)
Q Consensus 527 ~d~~ 530 (625)
.+..
T Consensus 339 ~~~~ 342 (577)
T KOG4270|consen 339 RDTS 342 (577)
T ss_pred hhcc
Confidence 5543
No 89
>KOG1453|consensus
Probab=99.93 E-value=5.4e-26 Score=265.70 Aligned_cols=381 Identities=24% Similarity=0.394 Sum_probs=270.5
Q ss_pred cCCCeecee-EeccC-Ccccccccccccc-ccccccccccc----ccccccccccccccccccccCCcccccceeecccc
Q psy10137 70 YLGHELESK-IINIP-TACEICNSLFKWP-IERMLVCQNCR----HTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPL 142 (625)
Q Consensus 70 ~~~H~F~~~-~~~~p-t~C~~C~~~i~~~-~~qg~~C~~C~----~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L 142 (625)
+..|.|+.. .+..| .||..|..++|+. .-++..|..|. ...|..|...+...|........... ..++|.++
T Consensus 389 ~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~-~~~~~~~~ 467 (918)
T KOG1453|consen 389 HKSHMFRAGNTVRGPRSWCESCATFLPGQRILQSVKEPLCGRVSLENSNSACSDLVPNVFKQLLKRLKRNL-VKILGTDL 467 (918)
T ss_pred HHHHHhhcccccCcchhcccchhhhchhhhhhhcccccccccccccccccchhcccchhhHHHHHHhhhhh-hhccccCc
Confidence 344777775 67778 9999999998776 66788999999 79999999999998876543222211 12888888
Q ss_pred ccc---ccCCCCccceeee-chhhhhhcccccccccccCCCHHHHHHHHHHHhcCC--CCCCCcc---CcChHHHHHHHH
Q psy10137 143 SQL---SSSDGKVPSLVDR-LITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK--LPELELE---VYSVHILANLLK 213 (625)
Q Consensus 143 ~~l---~~~~~~vP~vl~~-~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~--~~~~~~~---~~d~~~va~~lK 213 (625)
..+ .......|.++.. +.......|....|+||.+|....+...+..++... ...+... ..++....+.++
T Consensus 468 ~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~ 547 (918)
T KOG1453|consen 468 TTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALK 547 (918)
T ss_pred cccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcch
Confidence 887 2344578999988 888889999999999999999999999999988732 1122211 125666777999
Q ss_pred HHHHhC--CCCCCChhhHHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137 214 LFLREM--PEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291 (625)
Q Consensus 214 ~fLr~L--p~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P 291 (625)
.++|.+ |.+....+.|..|.. .....-++...+..+.. +..+...-+..... -||.
T Consensus 548 ~~~r~~~~P~~c~~c~~~~~~~~-~~c~~c~~~chkkc~~~------------------~~~~~~~~~l~~~~---~fG~ 605 (918)
T KOG1453|consen 548 HYLRSLRKPAPCRTCETYSWFME-LECELCRLVCHKKCLEA------------------LKSLCGHERLPGRP---LFGV 605 (918)
T ss_pred hhhhcccCCcccccccccchhhh-cccceeeeeccccchhh------------------ccccCccccccccc---cccH
Confidence 999999 999999999988886 22111111111111111 10011111111111 5666
Q ss_pred cccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhccccc
Q psy10137 292 CILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTR 371 (625)
Q Consensus 292 ~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~~~r 371 (625)
.|..-....+...-. ...+|+..+-.
T Consensus 606 ~l~~~~~~e~~~vP~---i~~~c~~~ie~--------------------------------------------------- 631 (918)
T KOG1453|consen 606 SLSELARYEPSTVPF---ILKKCLREIEA--------------------------------------------------- 631 (918)
T ss_pred HHHHhhccCCCCCCH---HHHHHHHHHHH---------------------------------------------------
Confidence 654321100000000 01111222111
Q ss_pred cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH-
Q psy10137 372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED- 448 (625)
Q Consensus 372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~- 448 (625)
.+++.+|+||++|..++++.|.+.++.|. ..+...+.|+|++++++|+|||+||+|||++.+|+.|+.+.... .+
T Consensus 632 -~~lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~ 709 (918)
T KOG1453|consen 632 -HLLRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEP 709 (918)
T ss_pred -hhhhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcccccccc
Confidence 48899999999999999999999999987 45566788999999999999999999999999999999998772 23
Q ss_pred -----HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc----hhHHHHHHH
Q psy10137 449 -----RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP----ESELAIHSK 519 (625)
Q Consensus 449 -----~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~----~~~~~~~~~ 519 (625)
.+..++.++..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+||||+++|+++....- .....+..+
T Consensus 710 ~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~~~~~~~~~~~y~~~~~ 789 (918)
T KOG1453|consen 710 SRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQ 789 (918)
T ss_pred ccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCcchhhhhccchhhHHHh
Confidence 78999999999999999999999999999999999999999999999999999988754322 122224455
Q ss_pred HHHhHhhccc
Q psy10137 520 IQELKTKIDE 529 (625)
Q Consensus 520 I~~l~~~~d~ 529 (625)
+.+++..+-+
T Consensus 790 l~~~~~~~~~ 799 (918)
T KOG1453|consen 790 LPEYKITLHN 799 (918)
T ss_pred cchHHHHHhh
Confidence 5555444433
No 90
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.93 E-value=1.3e-25 Score=223.35 Aligned_cols=131 Identities=21% Similarity=0.322 Sum_probs=118.4
Q ss_pred ccccCCCCCCCCcccch----HHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccchH
Q psy10137 373 RQIRSSKPKPFPQIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~----i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~~ 448 (625)
+|+.++|+||.+|+.+. ++++++.+|+|.... ..+|+|+||++||.|||+|||||||+++|+.|.++....
T Consensus 64 ~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~-- 138 (220)
T cd04380 64 RGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANN-- 138 (220)
T ss_pred cCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCc--
Confidence 68999999999999999 999999999997543 567999999999999999999999999999999986322
Q ss_pred HHHHHHHHHh-hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137 449 RVSTLFSILK-TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL 509 (625)
Q Consensus 449 ~~~~~~~li~-~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~ 509 (625)
...++.++. .||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|++++.+...
T Consensus 139 -~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~ 199 (220)
T cd04380 139 -EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG 199 (220)
T ss_pred -HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence 245677888 999999999999999999999999999999999999999999998876544
No 91
>KOG1117|consensus
Probab=99.93 E-value=8.3e-26 Score=245.53 Aligned_cols=185 Identities=29% Similarity=0.436 Sum_probs=162.0
Q ss_pred ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHHHHHHHHHHH
Q psy10137 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHILANLLKLFL 216 (625)
Q Consensus 138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~va~~lK~fL 216 (625)
-|..|.++-...+.||.+|..||.|+-++||..|||||++|...++..|.+.|-.+- ...+......+.+|+++||+||
T Consensus 713 ~gt~LqeqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Fl 792 (1186)
T KOG1117|consen 713 DGTALQEQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFL 792 (1186)
T ss_pred CcchhhhhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHH
Confidence 345566665677789999999999999999999999999999999999999998742 2223333457999999999999
Q ss_pred HhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccc
Q psy10137 217 REMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294 (625)
Q Consensus 217 r~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Ll 294 (625)
|+|++||+|.++|..|+++++..+ ++++....+|..||..||.||..||.||.+|.++++.|+|+.+|||.||||+||
T Consensus 793 rdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLF 872 (1186)
T KOG1117|consen 793 RDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLF 872 (1186)
T ss_pred HhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhe
Confidence 999999999999999999998776 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137 295 RQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL 330 (625)
Q Consensus 295 r~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~ 330 (625)
..+ +++ ..+..+++-||++|..+|.=+.
T Consensus 873 qTd---gqd-----ehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 873 QTD---GQD-----EHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred ecC---CCc-----hhhhhHHHHHhcCceEEEEecH
Confidence 874 222 2688999999999998884333
No 92
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.91 E-value=2.3e-24 Score=205.67 Aligned_cols=134 Identities=42% Similarity=0.650 Sum_probs=123.9
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+.++|+||.+|+..+++++++.++.|.... ....+|+|++|+++|.|||+||+||+|.+.|+.|+.+++.. +.++
T Consensus 14 ~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T cd00159 14 NGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERI 92 (169)
T ss_pred cCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHH
Confidence 68899999999999999999999999997543 44677999999999999999999999999999999998753 4688
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+
T Consensus 93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 93 EALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999977654
No 93
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.91 E-value=7.6e-25 Score=205.37 Aligned_cols=134 Identities=39% Similarity=0.618 Sum_probs=121.0
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~ 450 (625)
+|+..+|+||.+|+..++++|++.++.|.......+.+|+|+||++||.||++||+||+|.++|+.|+.+.+.. ++++
T Consensus 14 ~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~~~~~~~~ 93 (151)
T PF00620_consen 14 KGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKSADEEEQI 93 (151)
T ss_dssp HTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTSSSHHHHH
T ss_pred hCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHHhhhhccchhhHHH
Confidence 57899999999999999999999999998654366788999999999999999999999999999999876653 4788
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~ 506 (625)
+.++.++..||..|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++..
T Consensus 94 ~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 94 EAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 99999999999999999999999999999999999999999999999999997654
No 94
>KOG3564|consensus
Probab=99.89 E-value=7.5e-23 Score=211.17 Aligned_cols=170 Identities=24% Similarity=0.402 Sum_probs=143.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~ 450 (625)
+||.++|+||++|....+++|+++|-+|+.+... ...|+|++|++||+|||+|.|||||..+..+|.++++.++ ..+
T Consensus 376 RGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~-g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~tD~dn~~ 454 (604)
T KOG3564|consen 376 RGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHL-GNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEITDEDNSI 454 (604)
T ss_pred ccccccceeeccccHHHHHHHHHHHhccCCCCcc-CCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcCCCchhHH
Confidence 7999999999999999999999999999875433 4559999999999999999999999999999999998864 567
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhcccC
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEG 530 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~d~~ 530 (625)
.++..++..||++||.||.|||-||++||+ +..|+|+..|||.+|||+|+..+-.+.
T Consensus 455 ~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p---------------------- 511 (604)
T KOG3564|consen 455 LALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP---------------------- 511 (604)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc----------------------
Confidence 889999999999999999999999999998 677899999999999999998443321
Q ss_pred CcccchhhhhhHHHHHHHHHHHHhcCCCCcccHHhHHHHHhhcCC
Q psy10137 531 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575 (625)
Q Consensus 531 ~~~~l~~e~~~~~~ia~~lk~f~~~~p~~l~~~~l~~~~l~~~~~ 575 (625)
...+.-..+...-.+.+..+ .|+-.+|.+||.|-..
T Consensus 512 ---d~~~~l~dv~~q~rvmkaLl------elp~~yWsqfl~v~~~ 547 (604)
T KOG3564|consen 512 ---DQVTMLQDVKTQPRVMKALL------ELPLEYWSQFLGVEPV 547 (604)
T ss_pred ---cHhHHHHhhhhhHHHHHHHH------hCCHHHHHHhhccccc
Confidence 22223334444445565554 5888999999998765
No 95
>KOG4269|consensus
Probab=99.88 E-value=1.4e-22 Score=221.81 Aligned_cols=147 Identities=29% Similarity=0.400 Sum_probs=130.7
Q ss_pred CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCC--CcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137 358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEY 435 (625)
Q Consensus 358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~--~~~~~d~~~va~lLK~flr~LpePLi~~~l 435 (625)
.+-+++.|-.+...-+|++++||||.+|++..|+.|++.||.+.+.++ ..++.|+|+|||+||.|||+||+|||+.++
T Consensus 919 lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~ 998 (1112)
T KOG4269|consen 919 LPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEM 998 (1112)
T ss_pred CchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhh
Confidence 344666666666667899999999999999999999999999854433 346679999999999999999999999999
Q ss_pred HHHHHHHhccch--HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccccccc
Q psy10137 436 YEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI 504 (625)
Q Consensus 436 ~~~~~~~~~~~~--~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~ 504 (625)
|..|.+.....+ .....+..+|..||++|..++.+|+.||++|+.++..|||+.+|||+||+|+|.++.
T Consensus 999 ~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPs 1069 (1112)
T KOG4269|consen 999 YPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPS 1069 (1112)
T ss_pred hHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcH
Confidence 999999877654 567888999999999999999999999999999999999999999999999999954
No 96
>KOG1117|consensus
Probab=99.87 E-value=1.2e-22 Score=221.16 Aligned_cols=176 Identities=23% Similarity=0.278 Sum_probs=158.4
Q ss_pred hccCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCcchhHHHHHHHHHHhcCCCCCC
Q psy10137 353 VTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLL 431 (625)
Q Consensus 353 ~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~d~~~va~lLK~flr~LpePLi 431 (625)
-+-.||+-|+.++..+.++. ||..+||||+.|...++++|-+.|.++.. ..+..+++.+.+|+++||+|||+|++|||
T Consensus 722 Ls~~dIPvIVd~CI~FVTqy-Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLf 800 (1186)
T KOG1117|consen 722 LSKNDIPVIVDSCIAFVTQY-GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLF 800 (1186)
T ss_pred ccCCCCcEehHHHHHHHHHh-CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcccc
Confidence 34678999999999888776 99999999999999999999999998763 34566677899999999999999999999
Q ss_pred ChhhHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137 432 TFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL 509 (625)
Q Consensus 432 ~~~l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~ 509 (625)
|.++|..|+++++.+ ++++..+.++|..||..||.||..||.||++|..+++.|+|+++|||.||||+||. +++..
T Consensus 801 t~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFq--Tdgqd 878 (1186)
T KOG1117|consen 801 TKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQ--TDGQD 878 (1186)
T ss_pred chhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhee--cCCCc
Confidence 999999999999885 48999999999999999999999999999999999999999999999999999999 56666
Q ss_pred chhHHHHHHHHHHhHhhcccCC
Q psy10137 510 PESELAIHSKIQELKTKIDEGK 531 (625)
Q Consensus 510 ~~~~~~~~~~I~~l~~~~d~~~ 531 (625)
......+..+|..|...|+-.+
T Consensus 879 ehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 879 EHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred hhhhhHHHHHhcCceEEEEecH
Confidence 6778888889988888876653
No 97
>KOG4407|consensus
Probab=99.87 E-value=3.2e-22 Score=224.21 Aligned_cols=158 Identities=27% Similarity=0.439 Sum_probs=135.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCC---CCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch-
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL---PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 447 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~---~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~- 447 (625)
.||+..||||++|+...|.+|++.++.+.. .+..-+.| |+++|.+|||.|||.|||||||.++|..|+++-...+
T Consensus 1188 ~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~ 1267 (1973)
T KOG4407|consen 1188 YGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTH 1267 (1973)
T ss_pred cCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccH
Confidence 689999999999999999999999999742 11111333 8999999999999999999999999999999988754
Q ss_pred -HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh------HHHHHHHH
Q psy10137 448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES------ELAIHSKI 520 (625)
Q Consensus 448 -~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~------~~~~~~~I 520 (625)
+|+..++.+|..||..+|++|++|+.||.+|+.|++.|||-+.|||++|||+|.|.++|+..++. ..+++-+|
T Consensus 1268 l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI 1347 (1973)
T KOG4407|consen 1268 LNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLI 1347 (1973)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccHHHHhhcchhhhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999988754433 33455555
Q ss_pred HHhHhhcccC
Q psy10137 521 QELKTKIDEG 530 (625)
Q Consensus 521 ~~l~~~~d~~ 530 (625)
..+.-+|++.
T Consensus 1348 ~~~dwfF~es 1357 (1973)
T KOG4407|consen 1348 HYNDWFFDES 1357 (1973)
T ss_pred hhhhheeccC
Confidence 5555556653
No 98
>KOG2710|consensus
Probab=99.87 E-value=7.8e-22 Score=206.83 Aligned_cols=228 Identities=25% Similarity=0.318 Sum_probs=160.3
Q ss_pred ccCcCCCCccchhhhccccccccCCCCc-hhhHHhhHHHH--HHHHHHHHh---hHHHh-hhhHhhhhhhhhhHHHHHHH
Q psy10137 274 HEEANRMTPNSLAIVFAPCILRQRHFPA-QDALSDISRQT--LCIELIISE---QLKKL-ADALSDISRQTLCIELIISE 346 (625)
Q Consensus 274 ~~~~NkMt~~nLaivf~P~Llr~~~~~~-~~~~~~~~~~~--~~ve~lI~~---~~~if-~d~~~~~~~~~~~~~~~~~~ 346 (625)
.++.|+|...+++..+.+.++....... ..+..+..... ..+.-+..- ....+ +-......+..+++.+- ..
T Consensus 4 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 82 (412)
T KOG2710|consen 4 RSEENKMLSSSLAVLRATNLLQTSSPSPNMPSNFERSSRLGAASVDSLRDLKLNQGRVLDGLLLKVPLELSSKVASA-ET 82 (412)
T ss_pred cccccccccccccccccccccCCCCcccccCCccccccccchhhhhhhhhhhhccccccceeeeccchhhhhhhhhc-cc
Confidence 4567999999999999999998743221 11222211111 111111111 00000 00000001111111110 01
Q ss_pred HHHhhhhccCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCC---CCCCCcCCcchhHHHHHHHHHH
Q psy10137 347 QLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGK---LPELELEVYSVHILANLLKLFL 423 (625)
Q Consensus 347 ~~~~~~~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~---~~~~~~~~~d~~~va~lLK~fl 423 (625)
..-.....-+.|+.+...+..+ -.-+++...||||++|+..++++|++.||++. ....+|+++++|+||++||.||
T Consensus 83 ~~~~~~~~~~~IP~vv~~c~~~-lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~fl 161 (412)
T KOG2710|consen 83 RLQSLNPGEGQIPRVVAKCGQY-LKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFL 161 (412)
T ss_pred hhccCCccceeCcHHHHHHHHH-HHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHH
Confidence 1122333344444444444332 33468999999999999999999999999986 3456788999999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHhccc-h-HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhccccc-----------CCccc
Q psy10137 424 REMPEPLLTFEYYEEFLRAADLT-E-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN-----------RMTPN 490 (625)
Q Consensus 424 r~LpePLi~~~l~~~~~~~~~~~-~-~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~N-----------kM~~~ 490 (625)
|+||+||+|.++|+.|+..+... + +++..++.++..||..|+.+|.+|+.||+.++.|+..| +|++.
T Consensus 162 r~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~ 241 (412)
T KOG2710|consen 162 RDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSE 241 (412)
T ss_pred HhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchh
Confidence 99999999999999999999874 4 89999999999999999999999999999999999998 99999
Q ss_pred ccccccccccccc
Q psy10137 491 SLAIVFAQELKTK 503 (625)
Q Consensus 491 nLa~~faP~ll~~ 503 (625)
|||+||+|+|+..
T Consensus 242 nlatIf~P~iL~k 254 (412)
T KOG2710|consen 242 NLATIFGPNILYK 254 (412)
T ss_pred hhhhhhcchhhhc
Confidence 9999999999994
No 99
>KOG1452|consensus
Probab=99.85 E-value=7.6e-22 Score=194.45 Aligned_cols=194 Identities=26% Similarity=0.325 Sum_probs=163.0
Q ss_pred ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccC-cChHHHHHH
Q psy10137 135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEV-YSVHILANL 211 (625)
Q Consensus 135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~-~d~~~va~~ 211 (625)
..+||.+|+.++..+. .-|+++..|+++||++|++..|+|+++|+..+-+.||+.|+.+. ....-.+. -|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 3589999999998766 77889999999999999999999999999999999999999843 11122222 389999999
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHhcC--ch---HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137 212 LKLFLREMPEPLLTFEYYEEFLRAADL--TE---DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA 286 (625)
Q Consensus 212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~--~~---~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa 286 (625)
+|+|||||||||+|...++.-++|+.. ++ ....-+-.+|.-||.+++.+|-.++.||..|..+|+.|+||+..||
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls 341 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLS 341 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHH
Confidence 999999999999999999988888653 22 4455677889999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137 287 IVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD 328 (625)
Q Consensus 287 ivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d 328 (625)
.||||.||-+.+.-......+..+.+.+.+++|+.|.+-...
T Consensus 342 ~i~~P~L~~~~~t~sP~t~~~~sk~~AV~~~~i~~~~s~~~~ 383 (442)
T KOG1452|consen 342 LIFAPLLFFCLDTFSPYTISPTSKMAAVRTLDINQASSSLQM 383 (442)
T ss_pred HHhhhhHHHhhcccCCCccCCcchhHHHHHhhhhccCcHHHH
Confidence 999999998854433445667788888999999987654433
No 100
>KOG1450|consensus
Probab=99.85 E-value=3.1e-21 Score=210.33 Aligned_cols=149 Identities=26% Similarity=0.370 Sum_probs=128.4
Q ss_pred cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcC-CcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137 372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELE-VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED 448 (625)
Q Consensus 372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~-~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~ 448 (625)
..|+++.|+||++|+...|..||.++|.+...++... ..|+|.|+++||.||||||+||+|..+...|..+.... ..
T Consensus 485 ~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~ 564 (650)
T KOG1450|consen 485 KFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHT 564 (650)
T ss_pred hhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhh
Confidence 4689999999999999999999999996543333322 23899999999999999999999999999999998874 37
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHH
Q psy10137 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI 520 (625)
Q Consensus 449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I 520 (625)
+...+++++..||++|+.||+||+.||++|.+|++.|||+.+|||+||||+++.+-...............|
T Consensus 565 r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~~~~a~~~~~~~~i 636 (650)
T KOG1450|consen 565 RVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQETSSEAIHSTYQSQI 636 (650)
T ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEeccccccccccccchhhHHhHHHHH
Confidence 889999999999999999999999999999999999999999999999999999766655554444444433
No 101
>KOG1451|consensus
Probab=99.84 E-value=8.1e-21 Score=200.06 Aligned_cols=158 Identities=27% Similarity=0.398 Sum_probs=133.3
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCC-C--CCCC-cCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch-
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-L--PELE-LEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 447 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~--~~~~-~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~- 447 (625)
+|+.++|+||..|..++|+.|...+-..+ . .+.+ .+.||+-++++.||.|||.|||||+++.++..|+.|+...+
T Consensus 402 ~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq 481 (812)
T KOG1451|consen 402 SGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQ 481 (812)
T ss_pred cCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccch
Confidence 68899999999999999999987655433 2 2233 36789999999999999999999999999999999998864
Q ss_pred -HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh-----HHHHHHHHH
Q psy10137 448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES-----ELAIHSKIQ 521 (625)
Q Consensus 448 -~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~-----~~~~~~~I~ 521 (625)
-|+.+++.++-+||..||.+|+-||.||.+|+.|+..|.||+.||++||||+|+|+..+.-...+ ...+.-+|.
T Consensus 482 ~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKFQNIVVEILIE 561 (812)
T KOG1451|consen 482 TYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKFQNIVVEILIE 561 (812)
T ss_pred hhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchhhhhhHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999998876533222 234555666
Q ss_pred HhHhhcccC
Q psy10137 522 ELKTKIDEG 530 (625)
Q Consensus 522 ~l~~~~d~~ 530 (625)
++-.+|..-
T Consensus 562 nyeKIF~t~ 570 (812)
T KOG1451|consen 562 NYEKIFKTK 570 (812)
T ss_pred hhHHHhcCC
Confidence 666666553
No 102
>KOG4406|consensus
Probab=99.81 E-value=5.5e-20 Score=188.51 Aligned_cols=174 Identities=26% Similarity=0.352 Sum_probs=139.0
Q ss_pred cCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCCh
Q psy10137 355 LKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTF 433 (625)
Q Consensus 355 ~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~ 433 (625)
.+.|+.+..+.-....-.+.+++||+||.+++.+.+.++.+.+++|..++++ .+ |+|..|.++|.|||+||+||++.
T Consensus 268 ~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle--~~~~~h~~avllKtF~R~LpePL~t~ 345 (467)
T KOG4406|consen 268 GESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE--VYKDLHAPAVLLKTFLRSLPEPLLTF 345 (467)
T ss_pred cCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH--HhccchhhHHHHHHHHhcCCcccchh
Confidence 4445555543333332223399999999999999999999999999866554 55 59999999999999999999999
Q ss_pred hhHHHHHHHhccc-hHHHHHHHHHHhh-CChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCch
Q psy10137 434 EYYEEFLRAADLT-EDRVSTLFSILKT-LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPE 511 (625)
Q Consensus 434 ~l~~~~~~~~~~~-~~~~~~~~~li~~-Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~ 511 (625)
++|+.+....+.. .++..+++.+++. ||+.|+.++++++.||.+|++|+..|+||+.|||+||||+++|+......-.
T Consensus 346 ~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~ 425 (467)
T KOG4406|consen 346 RLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLK 425 (467)
T ss_pred hhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHH
Confidence 9999998877775 5788999999988 9999999999999999999999999999999999999999999775432222
Q ss_pred h----HHHHHHHHHHhHhhcccC
Q psy10137 512 S----ELAIHSKIQELKTKIDEG 530 (625)
Q Consensus 512 ~----~~~~~~~I~~l~~~~d~~ 530 (625)
. .......|..++..+...
T Consensus 426 q~npin~F~~~li~~~~~~f~~~ 448 (467)
T KOG4406|consen 426 QINPINKFTKFLIEHYKKLFTTP 448 (467)
T ss_pred HhccHHHHHHHHHHhhhhccCCC
Confidence 1 223445555555555553
No 103
>KOG4271|consensus
Probab=99.75 E-value=5.9e-19 Score=194.68 Aligned_cols=159 Identities=28% Similarity=0.493 Sum_probs=147.0
Q ss_pred cceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc--ChHHHHHH
Q psy10137 134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY--SVHILANL 211 (625)
Q Consensus 134 ~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~--d~~~va~~ 211 (625)
....||.++......+..+|.++++|++|||..|+.+||+||++|+.....+++..|.+. .++++.+. .++++|+.
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~--~~~dl~s~d~~v~~vagA 991 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLND--HNFDLSSMDTTVNVVAGA 991 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhh--ccccccccccccccccCc
Confidence 456799999999988999999999999999999999999999999999999999999873 23444444 59999999
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137 212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 289 (625)
Q Consensus 212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf 289 (625)
+|.|+..||+||+|+.+...+.++.++.+ .++..++.++..||+.|+.+++|++.||.+|+.+..+|.||.+||++||
T Consensus 992 lksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~ 1071 (1100)
T KOG4271|consen 992 LKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICF 1071 (1100)
T ss_pred chhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 99999999999999999999999999887 7788999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy10137 290 APCIL 294 (625)
Q Consensus 290 ~P~Ll 294 (625)
++.|+
T Consensus 1072 ~~~~~ 1076 (1100)
T KOG4271|consen 1072 PTLLM 1076 (1100)
T ss_pred cchHH
Confidence 99887
No 104
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.65 E-value=1.2e-15 Score=148.04 Aligned_cols=182 Identities=19% Similarity=0.261 Sum_probs=138.3
Q ss_pred eeecccccccccC-CCCccceeeech--hhhhhccccc--ccccccCCCHHHHHHHHHHHhcCCCC-CCC--ccCcCh--
Q psy10137 136 RVFGVPLSQLSSS-DGKVPSLVDRLI--TTIELRGIYT--EGIYRKSGIHSKIQELKTKIDEGKLP-ELE--LEVYSV-- 205 (625)
Q Consensus 136 ~~FG~~L~~l~~~-~~~vP~vl~~~i--~~ie~~gl~~--eGIfR~sg~~~~v~~L~~~~~~g~~~-~~~--~~~~d~-- 205 (625)
.+||+|+-+-+.. ....|..+..-. .++..+-++. .|+|++|+...-+.+.++.++..... ..+ ...|+-
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4688776554333 335666664444 3444444443 79999999999999999988874211 111 111221
Q ss_pred ------HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcC-----chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhc
Q psy10137 206 ------HILANLLKLFLREMPEPLLTFEYYEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYH 274 (625)
Q Consensus 206 ------~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~-----~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~ 274 (625)
-+|+.++++|+++|||||+|..+|+.|+.+++. .+.++++++.++..||++||..|+.|+.||++|+++
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~ 179 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKN 179 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence 289999999999999999999999999998872 237889999999999999999999999999999998
Q ss_pred c-------CcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137 275 E-------EANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA 327 (625)
Q Consensus 275 ~-------~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~ 327 (625)
+ ..|+| +++..|+|++++++..+ -.....+|.|||+|..+||.
T Consensus 180 ~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-------~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 180 DMPRLHKEIENRM---LVKQTFSRAILCSKDLD-------EGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred CccccccccchHH---HHHHHhhhHhcCccccC-------HHHHHHHHHHHHHcchhhhc
Confidence 4 25666 89999999999987422 24467899999999999883
No 105
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.65 E-value=1.3e-15 Score=146.70 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=123.3
Q ss_pred cceeeechhhhhhcccccccc---cccCCCHHHHHHH-HHHHhcCCCCCCCc--------cCcChHHHHHHHHHHHHhCC
Q psy10137 153 PSLVDRLITTIELRGIYTEGI---YRKSGIHSKIQEL-KTKIDEGKLPELEL--------EVYSVHILANLLKLFLREMP 220 (625)
Q Consensus 153 P~vl~~~i~~ie~~gl~~eGI---fR~sg~~~~v~~L-~~~~~~g~~~~~~~--------~~~d~~~va~~lK~fLr~Lp 220 (625)
-.++..|.++|+.+|+++++| ||-+++...++.+ +..|+.|.. .... ...|+|+++++||-+++.||
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~-~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP 85 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNG-QLQGTAELLDELRYADPHTLILVLKWIWSRLP 85 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCC-cccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence 356778999999999999999 9999999999988 456665421 1111 22599999999999999999
Q ss_pred CCCCCh-hhHHHHHHHhcCchHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccC
Q psy10137 221 EPLLTF-EYYEEFLRAADLTEDRVSTLFSILKTL--PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297 (625)
Q Consensus 221 ~pLl~~-~~y~~~l~~~~~~~~~~~~l~~~l~~L--P~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~ 297 (625)
+++++. +.|..|...-...+....+...++..+ |++|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 999999 999999996544443345888999888 89999999999999999999999999999999999999999885
Q ss_pred C
Q psy10137 298 H 298 (625)
Q Consensus 298 ~ 298 (625)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 3
No 106
>KOG4724|consensus
Probab=99.63 E-value=1.7e-16 Score=170.60 Aligned_cols=140 Identities=22% Similarity=0.265 Sum_probs=118.6
Q ss_pred HHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHH--------------------HHhHhhcccCCccc
Q psy10137 475 LARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI--------------------QELKTKIDEGKLPE 534 (625)
Q Consensus 475 L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I--------------------~~l~~~~d~~~~~~ 534 (625)
|.+|.. +..|-|+.. .||=.|--.+.+.++|.+..++..++ +++|+.++.|. .
T Consensus 67 l~~~~~-a~~~~~~~~----Lfg~pl~nic~~~~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv--~ 139 (741)
T KOG4724|consen 67 LEKVWI-ASSNTADSF----LFGWPLTNICVHFRLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGV--D 139 (741)
T ss_pred hhhccC-CcCCCCCcc----ccCccchhhcccCCCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccc--c
Confidence 334443 345556543 44444444455555777777766555 89999999987 8
Q ss_pred chhhhhhHHHHHHHHHHHHhcCCCCcccHHhHHHHHhhcCCc--hHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhh
Q psy10137 535 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 612 (625)
Q Consensus 535 l~~e~~~~~~ia~~lk~f~~~~p~~l~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~~ 612 (625)
+.++.+.++++|.++|+|+++||+.+|+++||++|..+++++ +++|++|+|+.++||++|..||++||.|| +|+++|
T Consensus 140 v~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S 218 (741)
T KOG4724|consen 140 VGLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILS 218 (741)
T ss_pred ccccccceEEeehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhh
Confidence 889999999999999999999999999999999999999997 99999999999999999999999999999 999999
Q ss_pred hhccCCCCCC
Q psy10137 613 EANRMTPNSL 622 (625)
Q Consensus 613 ~~~~~~~~~~ 622 (625)
++|+||++||
T Consensus 219 ~~n~m~~~nl 228 (741)
T KOG4724|consen 219 TINSMSGPNL 228 (741)
T ss_pred hhccccCccH
Confidence 9999999997
No 107
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.50 E-value=1.3e-13 Score=133.99 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=121.3
Q ss_pred ccccccccC--CCCCCCCcccchHHHHHHHhccCCCC---CCCcCCcch--------hHHHHHHHHHHhcCCCCCCChhh
Q psy10137 369 NTRIRQIRS--SKPKPFPQIHSKIQELKTKIDEGKLP---ELELEVYSV--------HILANLLKLFLREMPEPLLTFEY 435 (625)
Q Consensus 369 ~~rl~~l~~--~gifR~~G~~~~i~~L~~~l~~~~~~---~~~~~~~d~--------~~va~lLK~flr~LpePLi~~~l 435 (625)
..+.+.+++ .|+|+++|..+.+...++.++..++. +.+...|+- .+||+++++||++|||||+|..+
T Consensus 49 ~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l 128 (235)
T cd04405 49 VYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHL 128 (235)
T ss_pred ccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchH
Confidence 444556665 79999999999999999999987643 122222221 28999999999999999999999
Q ss_pred HHHHHHHhcc-----chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcc-------cccCCcccccccccccccccc
Q psy10137 436 YEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE-------EANRMTPNSLAIVFAQELKTK 503 (625)
Q Consensus 436 ~~~~~~~~~~-----~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~-------~~NkM~~~nLa~~faP~ll~~ 503 (625)
|+.|+.+++. .+.+++++|.++..||++||+.|+.|+.|+.+++.+. ..|+| |++..|+|+++++
T Consensus 129 ~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~ 205 (235)
T cd04405 129 FDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCS 205 (235)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCc
Confidence 9999998874 3578999999999999999999999999999999995 36777 8999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHhHhhc
Q psy10137 504 IDEGKLPESELAIHSKIQELKTKI 527 (625)
Q Consensus 504 ~~~~~~~~~~~~~~~~I~~l~~~~ 527 (625)
.+-+ .......+.+.|.+..+.|
T Consensus 206 ~~l~-~~~~~~LV~Fmmd~~~~if 228 (235)
T cd04405 206 KDLD-EGLADLLVLFLMDHHQDIF 228 (235)
T ss_pred cccC-HHHHHHHHHHHHHcchhhh
Confidence 7332 1223445555555554444
No 108
>KOG4271|consensus
Probab=99.45 E-value=3.4e-14 Score=157.56 Aligned_cols=129 Identities=23% Similarity=0.350 Sum_probs=117.1
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHH
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRV 450 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~ 450 (625)
.|+.++|+||++|++.+..+++..|.++...++.--+..+|+||+.+|.||..||+||+|++++..|.+++...+ .++
T Consensus 946 tg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlksffa~Lpeplipys~h~~~~e~~kI~D~~rkl 1025 (1100)
T KOG4271|consen 946 TGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKL 1025 (1100)
T ss_pred ccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchhhhhhCCCcccCccCCcchhhhhhcccchhhc
Confidence 446678999999999999999999998665444434457999999999999999999999999999999999865 678
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccc
Q psy10137 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELK 501 (625)
Q Consensus 451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll 501 (625)
..++..+..||+.|+.+++|++.||.+|+.+...|.||.+||++||+|.|+
T Consensus 1026 hglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1026 HGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred cchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence 899999999999999999999999999999999999999999999999887
No 109
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.45 E-value=5.4e-13 Score=128.66 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=115.7
Q ss_pred ccccCCCC---CCCCcccchHHHH-HHHhccCCCCC-CC------cCCcchhHHHHHHHHHHhcCCCCCCCh-hhHHHHH
Q psy10137 373 RQIRSSKP---KPFPQIHSKIQEL-KTKIDEGKLPE-LE------LEVYSVHILANLLKLFLREMPEPLLTF-EYYEEFL 440 (625)
Q Consensus 373 ~~l~~~gi---fR~~G~~~~i~~L-~~~l~~~~~~~-~~------~~~~d~~~va~lLK~flr~LpePLi~~-~l~~~~~ 440 (625)
+|++.+++ ||.+++.+.++.+ +..|+.+.... .. ....|+|+++++||.++|.||.++|+. +.|..|.
T Consensus 20 rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~~F~ 99 (198)
T cd04401 20 RGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYEEFK 99 (198)
T ss_pred cccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHHHHH
Confidence 58888888 9999999999988 67777663211 11 122599999999999999999999999 9999999
Q ss_pred HHhccchHHHHHHHHHHhhC--ChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc
Q psy10137 441 RAADLTEDRVSTLFSILKTL--PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP 510 (625)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~L--p~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~ 510 (625)
..-+..+--..+++.++..+ |+.|..++.+++.+|..|+.|+..|+|+..||+.+|||.+|..+.....+
T Consensus 100 ~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~~~~~ 171 (198)
T cd04401 100 ARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTGATGP 171 (198)
T ss_pred HHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCccCCc
Confidence 86443333345888999887 89999999999999999999999999999999999999999988776554
No 110
>KOG4370|consensus
Probab=99.44 E-value=7.3e-13 Score=136.09 Aligned_cols=186 Identities=29% Similarity=0.384 Sum_probs=154.5
Q ss_pred CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhh
Q psy10137 149 DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY 228 (625)
Q Consensus 149 ~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~ 228 (625)
++..|.++...+.+.+.+|+.++|+||.+...++.++++++=..|+. ....|+|..++..|+|++.+|+|++|.+
T Consensus 68 ~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k----~~~aD~~~~~~~~k~~~~~i~Epvvpi~- 142 (514)
T KOG4370|consen 68 GIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEK----MIFADAHDAAGLIKRFLRQIPEPVVPIE- 142 (514)
T ss_pred CCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhh----hhHHHHHHHHhHHHHhhhccCCcccccc-
Confidence 33678899999999999999999999999999999999988877742 2335999999999999999999998811
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhh
Q psy10137 229 YEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI 308 (625)
Q Consensus 229 y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~ 308 (625)
+ |.++|
T Consensus 143 ------------------------~-------------------------------------p~V~r------------- 148 (514)
T KOG4370|consen 143 ------------------------F-------------------------------------PSVAR------------- 148 (514)
T ss_pred ------------------------c-------------------------------------hHHHH-------------
Confidence 0 11111
Q ss_pred HHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhccccccccccCCCCCCCCcccc
Q psy10137 309 SRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHS 388 (625)
Q Consensus 309 ~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~ 388 (625)
.+. | .|
T Consensus 149 -----------------------------------------~Ci-----------------------------~-e~--- 154 (514)
T KOG4370|consen 149 -----------------------------------------SCI-----------------------------R-EG--- 154 (514)
T ss_pred -----------------------------------------HHh-----------------------------h-cc---
Confidence 000 0 00
Q ss_pred hHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHHHHHHHHHhhCChhhHH
Q psy10137 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFD 466 (625)
Q Consensus 389 ~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~~~~~~li~~Lp~~n~~ 466 (625)
.-..+++.+.+||++||.|||+||+|+++.++-..|.+++..+. ...+.++.++..||..||.
T Consensus 155 ---------------~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyl 219 (514)
T KOG4370|consen 155 ---------------LATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYL 219 (514)
T ss_pred ---------------ccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchH
Confidence 11235678999999999999999999999999999999988753 6788999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCccccccccccccccc
Q psy10137 467 LMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKT 502 (625)
Q Consensus 467 ~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~ 502 (625)
++.+|+-|+-+|.+..-.|||+..|++++..|++--
T Consensus 220 l~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~ 255 (514)
T KOG4370|consen 220 LYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQE 255 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHH
Confidence 999999999999999999999999999999998754
No 111
>KOG1452|consensus
Probab=99.43 E-value=1.5e-13 Score=136.25 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=112.6
Q ss_pred ccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCC-cchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--c--
Q psy10137 373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEV-YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--T-- 446 (625)
Q Consensus 373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~-~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~-- 446 (625)
+|++-.|+|+..|+..+-+-||..|+.... ..+-.+. -|.+++++++|+||||||||||+...++...+++.. +
T Consensus 214 RGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~d 293 (442)
T KOG1452|consen 214 RGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFD 293 (442)
T ss_pred cccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCC
Confidence 688889999999999999999999998542 2222222 288899999999999999999999999988888653 2
Q ss_pred -hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccccccc
Q psy10137 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI 504 (625)
Q Consensus 447 -~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~ 504 (625)
+....-+-.+|..|+.+++.+|..++.||.-|..+++.|+||+..||.+|||.||-.-
T Consensus 294 p~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~ 352 (442)
T KOG1452|consen 294 PHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCL 352 (442)
T ss_pred ccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhh
Confidence 2345566678899999999999999999999999999999999999999999998643
No 112
>KOG0696|consensus
Probab=99.19 E-value=6e-12 Score=129.96 Aligned_cols=114 Identities=16% Similarity=0.294 Sum_probs=83.2
Q ss_pred hhhhhhhcccccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccccCCcccccce
Q psy10137 57 DKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHR 136 (625)
Q Consensus 57 ~~~~~~~~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~ 136 (625)
-||.+-++..++.+++|.|..+.|.+||+|.||.+||||..+||++|+.|.+++|++|+..+...|+..........+..
T Consensus 30 ~RkGAlrqKnvhevk~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~ 109 (683)
T KOG0696|consen 30 LRKGALRQKNVHEVKSHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRS 109 (683)
T ss_pred HhhhhhhhcchhhhccceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCccc
Confidence 33444555567789999999999999999999999999999999999999999999999999999987653332222222
Q ss_pred eecccccccccCCCCccceeeechhhhhhcccccccccccC
Q psy10137 137 VFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKS 177 (625)
Q Consensus 137 ~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~s 177 (625)
..+..+... .-|.+..+|-..| +|+...|.=--+
T Consensus 110 kHkf~~~tY-----ssPTFCDhCGsLL--yGl~HQGmKC~~ 143 (683)
T KOG0696|consen 110 KHKFKIHTY-----SSPTFCDHCGSLL--YGLIHQGMKCDT 143 (683)
T ss_pred ccceeeeec-----CCCchhhhHHHHH--HHHHhccccccc
Confidence 222222111 3488888888877 455555544333
No 113
>KOG3565|consensus
Probab=99.11 E-value=5.2e-11 Score=133.60 Aligned_cols=146 Identities=29% Similarity=0.414 Sum_probs=132.1
Q ss_pred CCccceeeechhhhhhcccccccccc-cCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCC-CCChh
Q psy10137 150 GKVPSLVDRLITTIELRGIYTEGIYR-KSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP-LLTFE 227 (625)
Q Consensus 150 ~~vP~vl~~~i~~ie~~gl~~eGIfR-~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~p-Ll~~~ 227 (625)
..+|.++..|+.+++++|+..+|||| ++|....+..++.++.+|........+-+... ++++|.|+|.+.+| .++++
T Consensus 216 q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e 294 (640)
T KOG3565|consen 216 QFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFE 294 (640)
T ss_pred ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccc
Confidence 37999999999999999999999999 89999999999999999854444444445666 99999999999999 99999
Q ss_pred hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccccc
Q psy10137 228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ 296 (625)
Q Consensus 228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~ 296 (625)
.+..|+.+....+ .++..+..++..+|..+..++.++..|+...+..++.|.|++.|+|+||||+++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~ 365 (640)
T KOG3565|consen 295 DFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPV 365 (640)
T ss_pred cccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccC
Confidence 9999999988766 66688889999999999999999999999999999999999999999999999765
No 114
>KOG4370|consensus
Probab=98.99 E-value=8.1e-10 Score=113.96 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=101.3
Q ss_pred ccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCc
Q psy10137 200 LEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA 277 (625)
Q Consensus 200 ~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~ 277 (625)
.+++++..||+++|.|||+||+||+|.++-..|..++.... .+.+.++.++..||..||.++.+|+-|+-.|.+..-.
T Consensus 158 ~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~ 237 (514)
T KOG4370|consen 158 TTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYC 237 (514)
T ss_pred hhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999998765 7888999999999999999999999999999999999
Q ss_pred CCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137 278 NRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL 330 (625)
Q Consensus 278 NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~ 330 (625)
|||+..||+|+..|++=- ...++..|..|...+|+++.
T Consensus 238 ~Kln~q~i~i~lspt~q~---------------s~r~l~al~~h~q~lf~~v~ 275 (514)
T KOG4370|consen 238 LKLNKQQIFINLSPTEQE---------------SKRGLQALGLHLQTLFEMVR 275 (514)
T ss_pred hhcchhheeeecchHHHH---------------HHHHHHHHHHHHHHHHhhhe
Confidence 999999999999998732 12345566777777776653
No 115
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.91 E-value=6.6e-10 Score=84.81 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=46.3
Q ss_pred CeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124 (625)
Q Consensus 73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~ 124 (625)
|.|..+++..|++|++|++++|+...+|++|..|++.+|++|...++..|+.
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 8999999999999999999998878999999999999999999999998863
No 116
>KOG4236|consensus
Probab=98.71 E-value=6.1e-09 Score=110.90 Aligned_cols=61 Identities=23% Similarity=0.510 Sum_probs=56.4
Q ss_pred cccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137 66 DRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 66 ~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
++..+++|....+++..||+||+||.++||+++||++|..|+...||+|..+++..|+...
T Consensus 139 ed~~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r 199 (888)
T KOG4236|consen 139 EDFQIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVR 199 (888)
T ss_pred cceeeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCccc
Confidence 3456789999999999999999999999999999999999999999999999999997654
No 117
>KOG0694|consensus
Probab=98.67 E-value=4.7e-09 Score=115.54 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=76.2
Q ss_pred cccccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccccc--CCcccccceeeccc
Q psy10137 64 QEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARS--SAARSHGHRVFGVP 141 (625)
Q Consensus 64 ~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~--~~~~~~~~~~FG~~ 141 (625)
..+++.+.||.|..+.+.+||.|.+|++|+|++.+|||+|+.|..+||++|+.++...|....+ ..+...... |..+
T Consensus 150 ~~kVhei~gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~-~~~~ 228 (694)
T KOG0694|consen 150 QSKVHEIDGHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFE-FTFR 228 (694)
T ss_pred cceeEEeeCcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCcccccc-cccc
Confidence 3345789999999999999999999999999988899999999999999999999999986653 222222222 5555
Q ss_pred cccccc-CCCCccceeeechhhhh
Q psy10137 142 LSQLSS-SDGKVPSLVDRLITTIE 164 (625)
Q Consensus 142 L~~l~~-~~~~vP~vl~~~i~~ie 164 (625)
...-.. ....-|.+-.+|-.++.
T Consensus 229 ~Phrf~~~~~q~ptFc~hCGs~L~ 252 (694)
T KOG0694|consen 229 NPHRFVKLNRQRPTFCDHCGSVLY 252 (694)
T ss_pred CCCcchhhhccCccHHHhcchhhh
Confidence 443222 23367888888887774
No 118
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.66 E-value=9.3e-09 Score=77.30 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=46.2
Q ss_pred CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122 (625)
Q Consensus 73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C 122 (625)
|.|....+..|++|++|++.+|++..+|++|..|++++|++|..+++..|
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCCCCC
Confidence 88999999999999999999877668999999999999999999998766
No 119
>KOG4236|consensus
Probab=98.64 E-value=5.3e-09 Score=111.36 Aligned_cols=56 Identities=25% Similarity=0.650 Sum_probs=53.4
Q ss_pred CCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137 71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
.+|+|..+++..||.|.+|.+++.|+.+||++|.+|++.|||+|..+++.+|....
T Consensus 266 vPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge~ 321 (888)
T KOG4236|consen 266 VPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGEV 321 (888)
T ss_pred CCeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcccccccce
Confidence 58999999999999999999999999999999999999999999999999997654
No 120
>KOG0695|consensus
Probab=98.58 E-value=1.8e-08 Score=102.12 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=56.8
Q ss_pred ccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137 67 RIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 67 ~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
...++||.|+.+.++....|..|.++|||..+||++|-+|++.+||||+..++..|+...
T Consensus 125 ly~~ngh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~~ 184 (593)
T KOG0695|consen 125 LYRANGHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM 184 (593)
T ss_pred HHhhcCcchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccccchhhhhc
Confidence 567899999999999999999999999999999999999999999999999999998654
No 121
>KOG3565|consensus
Probab=98.56 E-value=4.9e-08 Score=109.93 Aligned_cols=135 Identities=23% Similarity=0.312 Sum_probs=118.9
Q ss_pred cccccCCCCCC-CCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCC-CCChhhHHHHHHHhccch--
Q psy10137 372 IRQIRSSKPKP-FPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP-LLTFEYYEEFLRAADLTE-- 447 (625)
Q Consensus 372 l~~l~~~gifR-~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpeP-Li~~~l~~~~~~~~~~~~-- 447 (625)
.++++.+|+|| .+|....+...+.++..|.......++.+..+ |.++|.|+|.|.+| .|+++.+..|+.......
T Consensus 231 ~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~~~~~~~ 309 (640)
T KOG3565|consen 231 RRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCAARDNLL 309 (640)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccccccchhhhhhhcCch
Confidence 57899999999 89999999999999999954445555656667 99999999999999 999999999998876543
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
++...++.++..+|..+..++.++..|+.+.++.+..|.|++.|+|+||||+++..++..
T Consensus 310 ~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~~ 369 (640)
T KOG3565|consen 310 SRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEGP 369 (640)
T ss_pred hhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcccc
Confidence 555788889999999999999999999999999999999999999999999998866544
No 122
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.50 E-value=4.4e-08 Score=73.17 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=44.3
Q ss_pred CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122 (625)
Q Consensus 73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C 122 (625)
|.|....+..|++|.+|++.+|+.. +|++|..|++.+|++|..+++..|
T Consensus 1 H~~~~~~~~~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFKKPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccCCCCCccccccccCcCC-CCcCCCCCCchHHHHHHhhcCCCC
Confidence 7888988999999999999977654 799999999999999999998766
No 123
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.44 E-value=1.2e-06 Score=94.13 Aligned_cols=148 Identities=20% Similarity=0.315 Sum_probs=116.4
Q ss_pred ccceeeechhhhhhccccccccc---ccCCCHHHHHHHHHHH-hcCCCCC-CC-------ccCcChHHHHHHHHHHHHhC
Q psy10137 152 VPSLVDRLITTIELRGIYTEGIY---RKSGIHSKIQELKTKI-DEGKLPE-LE-------LEVYSVHILANLLKLFLREM 219 (625)
Q Consensus 152 vP~vl~~~i~~ie~~gl~~eGIf---R~sg~~~~v~~L~~~~-~~g~~~~-~~-------~~~~d~~~va~~lK~fLr~L 219 (625)
|=.+|..|.++|..+|+++++|| |-.-+...++.+...| ..|.... .+ +...++|+++++||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 44577889999999999999998 6666777777666544 4433211 11 22359999999999999999
Q ss_pred CCCCCChhhHHHHHHHhcCchHHHHHHHHHH-hhCC-HHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccC
Q psy10137 220 PEPLLTFEYYEEFLRAADLTEDRVSTLFSIL-KTLP-KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297 (625)
Q Consensus 220 p~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l-~~LP-~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~ 297 (625)
|+.+++++.|..|...-...+-...+...++ ..|| ++|..++..++.+|..|+.|+..|+|+...|+..+|+-.|...
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~ 167 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP 167 (420)
T ss_pred CCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999877654443344555666 4564 6778899999999999999999999999999999999999885
Q ss_pred CC
Q psy10137 298 HF 299 (625)
Q Consensus 298 ~~ 299 (625)
..
T Consensus 168 ~~ 169 (420)
T PF08101_consen 168 DF 169 (420)
T ss_pred Cc
Confidence 43
No 124
>KOG0696|consensus
Probab=98.35 E-value=8.2e-08 Score=99.86 Aligned_cols=57 Identities=25% Similarity=0.560 Sum_probs=53.5
Q ss_pred cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137 70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
-.-|.|..+++..||+|+|||+++.|.+.||++|..|.+.+|++|...++.-|+...
T Consensus 108 r~kHkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~Dh 164 (683)
T KOG0696|consen 108 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDH 164 (683)
T ss_pred ccccceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcc
Confidence 356999999999999999999999999999999999999999999999999998664
No 125
>KOG4239|consensus
Probab=98.33 E-value=1.4e-07 Score=94.30 Aligned_cols=66 Identities=24% Similarity=0.500 Sum_probs=59.6
Q ss_pred hhcccccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccccc
Q psy10137 62 RKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARS 127 (625)
Q Consensus 62 ~~~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~ 127 (625)
.+.+..+..+||.|.......|+||+.|+.++|+.+.+|+.|..|+++||.+|...+..+|..+..
T Consensus 41 ~p~~~lv~~r~~~~~~~g~~~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~~ 106 (348)
T KOG4239|consen 41 QPLELLVPLRGHNFYTAGLLLPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPPS 106 (348)
T ss_pred CcccceeeccccccccccccccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCCC
Confidence 345566778999999999999999999999999999999999999999999999999999986653
No 126
>KOG1011|consensus
Probab=97.82 E-value=3.1e-06 Score=91.66 Aligned_cols=55 Identities=24% Similarity=0.476 Sum_probs=51.3
Q ss_pred cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137 70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124 (625)
Q Consensus 70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~ 124 (625)
-.+|+|..+++..||+|-.|..++||..+||++|..|+..||.+|...+..+|-.
T Consensus 170 ttphnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclq 224 (1283)
T KOG1011|consen 170 TTPHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQ 224 (1283)
T ss_pred CCCCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHH
Confidence 3579999999999999999999999999999999999999999999999998853
No 127
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.33 E-value=0.00069 Score=73.13 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=99.6
Q ss_pred ccccCCCCC---CCCcccchHHHHHH-HhccCCCCCC--------CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHH
Q psy10137 373 RQIRSSKPK---PFPQIHSKIQELKT-KIDEGKLPEL--------ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL 440 (625)
Q Consensus 373 ~~l~~~gif---R~~G~~~~i~~L~~-~l~~~~~~~~--------~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~ 440 (625)
+|++..++| |..-+.+.++.+.. .|..+..... .....++|+++++||--...||..+|+.+.|..|.
T Consensus 22 rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~Fk 101 (420)
T PF08101_consen 22 RGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYEEFK 101 (420)
T ss_pred ccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHHHHH
Confidence 455555543 55555555554433 4444432210 11234899999999999999999999999999998
Q ss_pred HHhccchHHHHHHHHHH-hhCC-hhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137 441 RAADLTEDRVSTLFSIL-KTLP-KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG 507 (625)
Q Consensus 441 ~~~~~~~~~~~~~~~li-~~Lp-~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~ 507 (625)
..-+..+--..++..++ ..|| +.|..++..++.+|..|+.|+..|+|+..-||-.+|+-.|.....+
T Consensus 102 ~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~ 170 (420)
T PF08101_consen 102 RREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG 170 (420)
T ss_pred HHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence 76543332345666666 4464 7778899999999999999999999999999999999999977666
No 128
>KOG0694|consensus
Probab=97.26 E-value=6.6e-05 Score=83.48 Aligned_cols=57 Identities=25% Similarity=0.508 Sum_probs=53.5
Q ss_pred cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137 70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
..+|.|..+.+..|++|+|||+++++...+|..|..|+..||.+|...+...|+.+.
T Consensus 228 ~~Phrf~~~~~q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~ 284 (694)
T KOG0694|consen 228 RNPHRFVKLNRQRPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSR 284 (694)
T ss_pred cCCCcchhhhccCccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCch
Confidence 456999999999999999999999999999999999999999999999999998765
No 129
>KOG2996|consensus
Probab=97.15 E-value=0.00014 Score=78.62 Aligned_cols=55 Identities=22% Similarity=0.589 Sum_probs=50.6
Q ss_pred ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137 69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124 (625)
Q Consensus 69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~ 124 (625)
..++|.|+-++|..+|.|+.|..++.|...|||+|..|+...|+.|...++. |+.
T Consensus 520 ~an~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~-cgr 574 (865)
T KOG2996|consen 520 RANNHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPP-CGR 574 (865)
T ss_pred cccCcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCC-ccc
Confidence 4678999999999999999999999998899999999999999999998876 753
No 130
>KOG1449|consensus
Probab=97.08 E-value=5.4e-05 Score=81.85 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCC
Q psy10137 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM 487 (625)
Q Consensus 411 d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM 487 (625)
|+.++..+++.|.|.+|.|+.. .++.. ..+.++..+.-....++.|+.+-..|..||.+.+...
T Consensus 273 di~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~----- 339 (670)
T KOG1449|consen 273 DIVVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK----- 339 (670)
T ss_pred ceeeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence 7889999999999999999443 22222 2245566666677899999999999999999887643
Q ss_pred cccccccccccccccccC
Q psy10137 488 TPNSLAIVFAQELKTKID 505 (625)
Q Consensus 488 ~~~nLa~~faP~ll~~~~ 505 (625)
.|+++++.|++++++.
T Consensus 340 --~s~~I~~~~~~~r~pp 355 (670)
T KOG1449|consen 340 --KSLAIVWSPNLFRPPP 355 (670)
T ss_pred --ccceeecCCCCCCCCC
Confidence 7899999999999876
No 131
>KOG0193|consensus
Probab=96.15 E-value=0.0024 Score=70.50 Aligned_cols=54 Identities=22% Similarity=0.444 Sum_probs=46.0
Q ss_pred ccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137 69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA 125 (625)
Q Consensus 69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~ 125 (625)
...+|.|..+++-.+.+|+.|..-++. .|++|+.|++.+|..|..+++..|+..
T Consensus 175 pl~~H~~~rktf~~~~fC~~~~~~~l~---~gfrC~~C~~KfHq~Cs~~vp~~C~~~ 228 (678)
T KOG0193|consen 175 PLTTHNFVRKTFFPLAFCDSCCNKFLF---TGFRCQTCGYKFHQSCSPRVPTSCVNP 228 (678)
T ss_pred Cccceeeeeccccchhhhhhhcchhhh---cccccCCCCCccccccCCCCCCCCCCc
Confidence 566799999999999999966554343 689999999999999999999999744
No 132
>KOG1449|consensus
Probab=94.31 E-value=0.0037 Score=68.09 Aligned_cols=172 Identities=18% Similarity=0.248 Sum_probs=115.8
Q ss_pred ceeecccccccccCCC-Cccc-eeeechhhhhh---cc--cccccccccCCCHHHHHHHHHHHhcCCCCC--CCccCcCh
Q psy10137 135 HRVFGVPLSQLSSSDG-KVPS-LVDRLITTIEL---RG--IYTEGIYRKSGIHSKIQELKTKIDEGKLPE--LELEVYSV 205 (625)
Q Consensus 135 ~~~FG~~L~~l~~~~~-~vP~-vl~~~i~~ie~---~g--l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~--~~~~~~d~ 205 (625)
...||..+..+....+ .||. .+.+|+.-++. ++ +.-.|.++++ .|.|-... ...-.-|+
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~------------~D~gae~d~~af~~p~di 274 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAV------------EDEGAEVDGEAFRWPSDI 274 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecc------------ccccccccccccCCccce
Confidence 3456766766655544 8898 77777777655 22 2233444443 34442111 11113488
Q ss_pred HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch---HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCc
Q psy10137 206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE---DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTP 282 (625)
Q Consensus 206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~---~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~ 282 (625)
.++..+++.|.+++|.|+.. .++...| +.+..+.-....++++|+.+-.+|..||.+.+.--
T Consensus 275 ~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~------- 339 (670)
T KOG1449|consen 275 VVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK------- 339 (670)
T ss_pred eeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------
Confidence 99999999999999999544 2222222 55666666778899999999999999999988632
Q ss_pred cchhhhccccccccCCC-Cc--hhhHHhhHHHHHHHHHHHHhhHHHhhhhHhhh
Q psy10137 283 NSLAIVFAPCILRQRHF-PA--QDALSDISRQTLCIELIISEQLKKLADALSDI 333 (625)
Q Consensus 283 ~nLaivf~P~Llr~~~~-~~--~~~~~~~~~~~~~ve~lI~~~~~if~d~~~~~ 333 (625)
.+++|++.|+++|++.. +. ..-+.-...++.+..+.|++....|..++.-.
T Consensus 340 ~s~~I~~~~~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i~~e 393 (670)
T KOG1449|consen 340 KSLAIVWSPNLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLFVNDIDEE 393 (670)
T ss_pred ccceeecCCCCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhhhcccChh
Confidence 89999999999998432 11 11244556777788889999888886665444
No 133
>KOG3532|consensus
Probab=89.85 E-value=0.054 Score=60.23 Aligned_cols=49 Identities=8% Similarity=-0.127 Sum_probs=42.4
Q ss_pred cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccc
Q psy10137 70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120 (625)
Q Consensus 70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~ 120 (625)
.+-|.|+.+.+-.||||+.|.+-. | .+++..|..|.++||.+|..+...
T Consensus 70 ~N~~r~~~t~~~~~t~~~~~~~~~-~-~~~AS~c~s~~~V~h~lfqE~k~a 118 (1051)
T KOG3532|consen 70 INQFRPAQIPEELRTFLKSGEDGQ-G-ISKASSCNSISLVLHMLFQEHKDT 118 (1051)
T ss_pred hhhcChhcCcccccccccccccch-h-hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455999999999999999999963 4 468999999999999999988744
No 134
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=89.58 E-value=0.2 Score=33.16 Aligned_cols=29 Identities=24% Similarity=0.628 Sum_probs=24.9
Q ss_pred ccccccccccccccccccccccccccccccc
Q psy10137 85 ACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115 (625)
Q Consensus 85 ~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~ 115 (625)
+|+.|++.+.|.. +|.|..|.+..|.+|.
T Consensus 2 ~C~~C~~~~~~~~--~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY--FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE--eEEeCCCCCeEcCccC
Confidence 6999999876643 8999999999999984
No 135
>KOG1169|consensus
Probab=85.19 E-value=0.32 Score=54.82 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=46.8
Q ss_pred CCCeeceeEeccCCccccccccc---ccccccccccccccccccccccccccccccccc
Q psy10137 71 LGHELESKIINIPTACEICNSLF---KWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126 (625)
Q Consensus 71 ~~H~F~~~~~~~pt~C~~C~~~i---~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~ 126 (625)
..|.+....+..|++|.+|-++. .+.+.+|+.|.-|++.+|..|+......|....
T Consensus 97 ~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~ 155 (634)
T KOG1169|consen 97 GDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKC 155 (634)
T ss_pred CceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCccccccc
Confidence 46888899999999999987763 445689999999999999999999988865443
No 136
>KOG3532|consensus
Probab=82.58 E-value=0.68 Score=51.94 Aligned_cols=49 Identities=6% Similarity=-0.133 Sum_probs=43.0
Q ss_pred ccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccc
Q psy10137 69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119 (625)
Q Consensus 69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~ 119 (625)
...||-|..+.+...+.|+.|++.||- .-+..|+.|...||+||..+..
T Consensus 743 ~~~~~d~~~~h~~r~~~~~~~~~ki~~--~~a~~~~~~~~~~~~k~~~~~~ 791 (1051)
T KOG3532|consen 743 TEDGGDDEEAHLDRKRSASTRKAKIQA--TFAAGKKKVLDLMPQKRKNTDA 791 (1051)
T ss_pred CCCCCchHHhhhhhhcccchhccceee--hhhhcccHHHHhcchhhhcchh
Confidence 467899999999999999999998653 4678999999999999998864
No 137
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.47 E-value=1.1 Score=34.01 Aligned_cols=38 Identities=32% Similarity=0.863 Sum_probs=30.1
Q ss_pred Cccccccccccccccccccccccccccccccccccccccc
Q psy10137 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123 (625)
Q Consensus 84 t~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~ 123 (625)
+.|..|++.+. .....++|..|+..-|+.|..+.-. |.
T Consensus 6 ~~C~~Cg~~~~-~~dDiVvCp~CgapyHR~C~~~~g~-C~ 43 (54)
T PF14446_consen 6 CKCPVCGKKFK-DGDDIVVCPECGAPYHRDCWEKAGG-CI 43 (54)
T ss_pred ccChhhCCccc-CCCCEEECCCCCCcccHHHHhhCCc-eE
Confidence 67999999754 2357899999999999999987633 54
No 138
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=75.94 E-value=0.83 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.647 Sum_probs=12.7
Q ss_pred ccccccccccccccccccccccccccccccc
Q psy10137 85 ACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115 (625)
Q Consensus 85 ~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~ 115 (625)
.|+.|+.-+.+ ...|.|..|.+..|..|.
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhcC
Confidence 48899987543 357999999999999884
No 139
>KOG0612|consensus
Probab=69.01 E-value=1.1 Score=53.57 Aligned_cols=55 Identities=29% Similarity=0.656 Sum_probs=47.2
Q ss_pred cccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccc
Q psy10137 68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123 (625)
Q Consensus 68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~ 123 (625)
..+.||.|....+..|+.|+.|.+.+|..++ +|.|..|...||+.=..++..+|-
T Consensus 1205 ~v~~~~~~~~~l~~~~~~~~~~~k~l~~~~~-~ye~~~~~~~~~~d~~~k~m~p~k 1259 (1317)
T KOG0612|consen 1205 LVHKGHEFIPFLYHFPTNCEACIKPLWHMFK-AYECRRCHIKCHKDHMDKIMAPCK 1259 (1317)
T ss_pred hcCCCCcchHHHhhcchhHHHHhhhcccchh-HHHHHHhhccccccccccccCccc
Confidence 4678999999999999999999997665544 999999999999888888767665
No 140
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=65.17 E-value=4.8 Score=34.72 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=25.4
Q ss_pred eEeccCCccccccccccccccccccccccccccccccccc
Q psy10137 78 KIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117 (625)
Q Consensus 78 ~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~ 117 (625)
..+..-+.|..|++.+.. ..+.-.-|+.+.|..|..+
T Consensus 73 v~i~~~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGN---SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EEECCCCCccCcCCcCCC---ceEEEeCCCeEEecccccC
Confidence 345556889999998653 2344445568899999753
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.12 E-value=4.7 Score=39.61 Aligned_cols=40 Identities=33% Similarity=0.865 Sum_probs=29.5
Q ss_pred CCccccccc-ccccc--cccccccccccccccccccccccccccc
Q psy10137 83 PTACEICNS-LFKWP--IERMLVCQNCRHTCHRKCYTRIMGECGL 124 (625)
Q Consensus 83 pt~C~~C~~-~i~~~--~~qg~~C~~C~~~~HkkC~~~i~~~C~~ 124 (625)
.-.|+.|++ -+.++ .....+|..|+.+.|+.|..+ ..|++
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~~Cpk 194 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--KSCPK 194 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--CCCCC
Confidence 346888875 33444 345789999999999999997 55754
No 142
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=45.68 E-value=5.8 Score=27.50 Aligned_cols=19 Identities=37% Similarity=0.973 Sum_probs=13.0
Q ss_pred ccccccccccccccccccc
Q psy10137 100 MLVCQNCRHTCHRKCYTRI 118 (625)
Q Consensus 100 g~~C~~C~~~~HkkC~~~i 118 (625)
-++|..|+..+|..|+-..
T Consensus 4 ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEE-SSS--EEEHHHHT-S
T ss_pred eEEeCCCCCcCChhhCCcc
Confidence 4789999999999998754
No 143
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=40.51 E-value=8.4 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.817 Sum_probs=17.2
Q ss_pred ccccccccccccccccccc--cccccccccccccc
Q psy10137 86 CEICNSLFKWPIERMLVCQ--NCRHTCHRKCYTRI 118 (625)
Q Consensus 86 C~~C~~~i~~~~~qg~~C~--~C~~~~HkkC~~~i 118 (625)
|..|.+.+. +|.+|. +|....|..|....
T Consensus 1 C~~C~~iv~----~G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVT----QGQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-S----SSEE-SS--S--EE-HHHHHHH
T ss_pred CcccchhHe----eeccCCCCccCchHHHHHHHHH
Confidence 678888643 679999 69999999998865
No 144
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.15 E-value=17 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.575 Sum_probs=24.8
Q ss_pred cccccccccccccccccccccccccccccccccc
Q psy10137 85 ACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118 (625)
Q Consensus 85 ~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i 118 (625)
+|..|++ .......+.|..|+...|..|....
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCC
Confidence 4778888 2334567899999999999998754
No 145
>KOG3520|consensus
Probab=34.97 E-value=15 Score=44.54 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=42.7
Q ss_pred cccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccc
Q psy10137 68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118 (625)
Q Consensus 68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i 118 (625)
...++|.|.......|..|..|.+-+. .++++.|..|+...|+.|....
T Consensus 183 ~~~~~H~~~~~~~~~~~~~a~~~k~l~--~~~a~~~p~~~s~~~~~~~~~~ 231 (1167)
T KOG3520|consen 183 STINFHSFSSIPVVGPGSCAACNKSLT--TKQAYTCPNCSSSVLKGCRAFL 231 (1167)
T ss_pred ccccccccccccccCccchhhcccccc--hhhhccCCCccchhhhhhhhhh
Confidence 347889999999999999999999644 4688999999999999998865
No 146
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=29.75 E-value=32 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=15.3
Q ss_pred ccccccccccccccccccccccccc
Q psy10137 85 ACEICNSLFKWPIERMLVCQNCRHT 109 (625)
Q Consensus 85 ~C~~C~~~i~~~~~qg~~C~~C~~~ 109 (625)
.|..|+...........+|..|+..
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGHR 26 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred CCCcCCCeeEcCCCCcEECCcCCCe
Confidence 3777777555444456788888853
No 147
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.69 E-value=32 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=24.4
Q ss_pred cCCccccccccccc-cccccccccccccccccc
Q psy10137 82 IPTACEICNSLFKW-PIERMLVCQNCRHTCHRK 113 (625)
Q Consensus 82 ~pt~C~~C~~~i~~-~~~qg~~C~~C~~~~Hkk 113 (625)
..+.|..||....- ...+.+.|..|+...|+.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcH
Confidence 45679999997555 346678999999888764
No 148
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=27.49 E-value=87 Score=23.99 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhhhhccC
Q psy10137 580 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM 617 (625)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~~~~~~~ 617 (625)
|+.-+||+|.-=.-=-..|+|+.+.|++... ..+|.|
T Consensus 21 IaeskrLIDLsIqnY~~Fl~yi~eLL~~lq~-ata~~~ 57 (58)
T PF12491_consen 21 IAESKRLIDLSIQNYHMFLRYITELLKELQS-ATANDI 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccC
Confidence 4445666665443344578999999999983 555554
No 149
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.73 E-value=43 Score=29.77 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=24.8
Q ss_pred cCCccccccccccccccccccccccccccccccccc
Q psy10137 82 IPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117 (625)
Q Consensus 82 ~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~ 117 (625)
....|..|+..+.+....|..|.+|+..+=++|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 346799999866666678899999995554556654
No 150
>KOG0957|consensus
Probab=23.61 E-value=68 Score=35.34 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=23.0
Q ss_pred cccccc-cccccccccccccccccccccccccccc
Q psy10137 85 ACEICN-SLFKWPIERMLVCQNCRHTCHRKCYTRI 118 (625)
Q Consensus 85 ~C~~C~-~~i~~~~~qg~~C~~C~~~~HkkC~~~i 118 (625)
-|-+|- .. .--...-++|..|+..+|..|+-..
T Consensus 121 iCcVClg~r-s~da~ei~qCd~CGi~VHEgCYGv~ 154 (707)
T KOG0957|consen 121 ICCVCLGQR-SVDAGEILQCDKCGINVHEGCYGVL 154 (707)
T ss_pred EEEEeecCc-cccccceeeccccCceecccccccc
Confidence 366663 32 2222345899999999999999876
No 151
>KOG3362|consensus
Probab=22.25 E-value=30 Score=31.70 Aligned_cols=28 Identities=25% Similarity=0.781 Sum_probs=18.4
Q ss_pred cCCccccccccccccccccccccccc-cccccccc
Q psy10137 82 IPTACEICNSLFKWPIERMLVCQNCR-HTCHRKCY 115 (625)
Q Consensus 82 ~pt~C~~C~~~i~~~~~qg~~C~~C~-~~~HkkC~ 115 (625)
..++|.+||. |. -|-|..|| .-|-.+|.
T Consensus 117 ~r~fCaVCG~--~S----~ysC~~CG~kyCsv~C~ 145 (156)
T KOG3362|consen 117 LRKFCAVCGY--DS----KYSCVNCGTKYCSVRCL 145 (156)
T ss_pred cchhhhhcCC--Cc----hhHHHhcCCceeechhh
Confidence 4468999993 33 37899999 34444443
No 152
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=21.70 E-value=55 Score=24.07 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=17.3
Q ss_pred ccccccccccccc-c--cccccccccccc
Q psy10137 85 ACEICNSLFKWPI-E--RMLVCQNCRHTC 110 (625)
Q Consensus 85 ~C~~C~~~i~~~~-~--qg~~C~~C~~~~ 110 (625)
+|..||.++.-.- + .-+.|..|++..
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeE
Confidence 7999999654321 1 247899999653
No 153
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.30 E-value=49 Score=36.04 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=26.9
Q ss_pred CeeceeEeccCCccccccccccccccccccccccccccccc
Q psy10137 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRK 113 (625)
Q Consensus 73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~Hkk 113 (625)
|.... ....-..|-.||..+..-.+.|++|..|+...-..
T Consensus 341 ~~l~~-~~~~~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 341 LKLAR-YERVNPVCPRCGGRMKSAGRNGFRCKKCGTRARET 380 (421)
T ss_pred EEeee-eEEcCCCCCccCCchhhcCCCCcccccccccCCcc
Confidence 44455 33344589999997665444499999999765443
No 154
>KOG1253|consensus
Probab=20.61 E-value=87 Score=34.85 Aligned_cols=52 Identities=31% Similarity=0.459 Sum_probs=26.8
Q ss_pred cceeeechhhhhhccccccccc-ccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHH
Q psy10137 153 PSLVDRLITTIELRGIYTEGIY-RKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLK 213 (625)
Q Consensus 153 P~vl~~~i~~ie~~gl~~eGIf-R~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK 213 (625)
+.+|..++......+.++-|.+ |+.|--. ..+. +.+++.+ -+.++-+|+++|
T Consensus 361 ~~fv~~mL~~~k~~~~~~~~t~kri~g~L~-------~~~e-eL~dvp~-y~~~~~l~s~lk 413 (525)
T KOG1253|consen 361 AEFVTEMLEIAKEVSEDTYGTDKRLSGMLE-------LVDE-ELPDVPL-YYSLNQLCSVLK 413 (525)
T ss_pred HHHHHHHHHHhhcCCccccchhhhheehhh-------cccc-cccCCcc-ccchhhhhhhhc
Confidence 5667777777766666655433 3444221 1222 2222222 146777777776
Done!