RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10137
(625 letters)
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 238 bits (610), Expect = 1e-75
Identities = 96/187 (51%), Positives = 132/187 (70%), Gaps = 4/187 (2%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FGV LS L+S D VP ++++L+ IE+ G+YTEGIYRKSG +KI+EL+ +D
Sbjct: 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP-DS 59
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPK 255
+ LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E +RV L+S+L+ LP+
Sbjct: 60 VNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPR 119
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDALSDISRQTLC 314
N + +ERLIFHL RVA EE NRM+ N+LAIVFAPCILR +L D+S+ T C
Sbjct: 120 ANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTADPLQSLQDVSKTTTC 179
Query: 315 IELIISE 321
+E +I E
Sbjct: 180 VETLIKE 186
Score = 145 bits (367), Expect = 2e-40
Identities = 59/112 (52%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
+KI+EL+ +D + LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E
Sbjct: 44 NKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEE 102
Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+RV L+S+L+ LP+ N + +ERLIFHL RVA EE NRM+ N+LAIVFA
Sbjct: 103 KQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFA 154
Score = 134 bits (340), Expect = 1e-36
Identities = 54/107 (50%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
+KI+EL+ +D + LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E
Sbjct: 44 NKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEE 102
Query: 578 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+RV L+S+L+ LP+ N + +ERLIFHL RVA EE NRM+ N+L
Sbjct: 103 KQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANAL 149
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXA. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 181 bits (461), Expect = 8e-54
Identities = 94/188 (50%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FGV LS+L+S D VP +V++LI IE+ G+YTEGIYRKSG +KI+EL+ +D
Sbjct: 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDT-DANS 59
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDR--VSTLFSILKTLPK 255
+ L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA L E R V ++S++ L +
Sbjct: 60 VNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSR 119
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSDISRQTL 313
+ + +ERLIFHL R+A EE NRM+ N+LAIVFAPCILR P Q ++ DIS+ T
Sbjct: 120 THLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTTDPLQ-SVQDISKTTT 178
Query: 314 CIELIISE 321
C+ELI+ E
Sbjct: 179 CVELIVCE 186
Score = 107 bits (267), Expect = 1e-26
Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
+KI+EL+ +D + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA L E
Sbjct: 44 NKIKELRQGLDT-DANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQE 102
Query: 448 DR--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
R V ++S++ L + + + +ERLIFHL R+A EE NRM+ N+LAIVFA
Sbjct: 103 RRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFA 154
Score = 97.8 bits (243), Expect = 2e-23
Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
+KI+EL+ +D + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA L E
Sbjct: 44 NKIKELRQGLDT-DANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQE 102
Query: 578 DR--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
R V ++S++ L + + + +ERLIFHL R+A EE NRM+ N+L
Sbjct: 103 RRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANAL 149
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain. GTPase activator proteins
towards Rho/Rac/Cdc42-like small GTPases.
Length = 152
Score = 175 bits (445), Expect = 8e-52
Identities = 72/152 (47%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
P +V++ + +E RG+ TEGI+R SG S+I+EL+ D G+ +L+LE VH++A+LL
Sbjct: 1 PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60
Query: 213 KLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLAR 270
KLFLRE+PEPLLTFE YEEF+ AA E+RV L +L+ LP N D + L+ HL R
Sbjct: 61 KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120
Query: 271 VAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ 302
VA + E N+M ++LAIVF P +LR +
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPPDDESD 152
Score = 131 bits (332), Expect = 7e-36
Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
S+I+EL+ D G+ +L+LE VH++A+LLKLFLRE+PEPLLTFE YEEF+ AA
Sbjct: 29 SRIKELREAFDSGEDVDLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAAKSED 88
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E+RV L +L+ LP N D + L+ HL RVA + E N+M ++LAIVF
Sbjct: 89 EEERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNLAIVFG 140
Score = 121 bits (305), Expect = 4e-32
Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
S+I+EL+ D G+ +L+LE VH++A+LLKLFLRE+PEPLLTFE YEEF+ AA
Sbjct: 29 SRIKELREAFDSGEDVDLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAAKSED 88
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E+RV L +L+ LP N D + L+ HL RVA + E N+M ++L
Sbjct: 89 EEERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNL 135
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases.
GTPase activator proteins towards Rho/Rac/Cdc42-like
small GTPases. etter domain limits and outliers.
Length = 174
Score = 170 bits (432), Expect = 1e-49
Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 3/173 (1%)
Query: 152 VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL 211
+P +V++ I +E RG+ TEGIYR SG S+++EL+ D G P+L+L Y VH +A L
Sbjct: 3 IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGL 62
Query: 212 LKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPKPNFDLMERLIFHLA 269
LKLFLRE+PEPL+T+E YEEF+ AA L ++ R+ L +L LP N + L+ HL
Sbjct: 63 LKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLN 122
Query: 270 RVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
RVA H E N+MT +LAIVF P +LR +L DI Q IE +I
Sbjct: 123 RVAEHSEENKMTARNLAIVFGPTLLRPP-DGEVASLKDIRHQNTVIEFLIENA 174
Score = 118 bits (299), Expect = 4e-31
Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
S+++EL+ D G P+L+L Y VH +A LLKLFLRE+PEPL+T+E YEEF+ AA L +
Sbjct: 32 SRVKELRDAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYELYEEFIEAAKLED 91
Query: 448 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ R+ L +L LP N + L+ HL RVA H E N+MT +LAIVF
Sbjct: 92 ETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFG 143
Score = 109 bits (275), Expect = 9e-28
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
S+++EL+ D G P+L+L Y VH +A LLKLFLRE+PEPL+T+E YEEF+ AA L +
Sbjct: 32 SRVKELRDAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYELYEEFIEAAKLED 91
Query: 578 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ R+ L +L LP N + L+ HL RVA H E N+MT +L
Sbjct: 92 ETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNL 138
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXB. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing neurons
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 168 bits (426), Expect = 7e-49
Identities = 82/188 (43%), Positives = 129/188 (68%), Gaps = 6/188 (3%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FGV + L+S+ VP ++++L+ +E+ G+YTEGIYRKSG ++++EL + PE
Sbjct: 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQAD--PE 58
Query: 198 -LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLP 254
++LE Y +H + LLK +LRE+PEPL+TF Y +FLRA +L E +++ ++ +L+ LP
Sbjct: 59 NVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLP 118
Query: 255 KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDALSDISRQTL 313
N + +ERLIFHL +VA E+ NRM+PN+LAIVFAPC+LR ++ D+++ T
Sbjct: 119 TANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDSSDPLTSMKDVAKTTT 178
Query: 314 CIELIISE 321
C+E++I E
Sbjct: 179 CVEMLIKE 186
Score = 108 bits (270), Expect = 4e-27
Identities = 52/113 (46%), Positives = 79/113 (69%), Gaps = 5/113 (4%)
Query: 388 SKIQELKTKIDEGKLPE-LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
++++EL + PE ++LE Y +H + LLK +LRE+PEPL+TF Y +FLRA +L
Sbjct: 44 NRMKELHQLLQAD--PENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELP 101
Query: 447 E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E +++ ++ +L+ LP N + +ERLIFHL +VA E+ NRM+PN+LAIVFA
Sbjct: 102 EKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFA 154
Score = 98.9 bits (246), Expect = 8e-24
Identities = 47/108 (43%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 518 SKIQELKTKIDEGKLPE-LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
++++EL + PE ++LE Y +H + LLK +LRE+PEPL+TF Y +FLRA +L
Sbjct: 44 NRMKELHQLLQAD--PENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELP 101
Query: 577 E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E +++ ++ +L+ LP N + +ERLIFHL +VA E+ NRM+PN+L
Sbjct: 102 EKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNAL 149
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for
Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small
GTPases. Small GTPases (G proteins) cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when bound
to GDP. The Rho family of small G proteins, which
includes Cdc42Hs, activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. G proteins generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude. The
RhoGAPs are one of the major classes of regulators of
Rho G proteins.
Length = 169
Score = 162 bits (413), Expect = 5e-47
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 4/171 (2%)
Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
P ++++ I +E G+ TEGI+R SG SKI+ELK K D G+ +LE Y VH +A+LL
Sbjct: 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDI-DDLEDYDVHDVASLL 59
Query: 213 KLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLAR 270
KL+LRE+PEPL+ FE Y+EF+ A + E+R+ L +LK+LP N DL++ L+ L +
Sbjct: 60 KLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHK 119
Query: 271 VAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISE 321
++ + E N+MT ++LAIVFAP +LR + L DI + +E +I
Sbjct: 120 ISQNSEVNKMTASNLAIVFAPTLLRPPD-SDDELLEDIKKLNEIVEFLIEN 169
Score = 115 bits (291), Expect = 4e-30
Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
SKI+ELK K D G+ +LE Y VH +A+LLKL+LRE+PEPL+ FE Y+EF+ A +
Sbjct: 29 SKIEELKKKFDRGEDI-DDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIED 87
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKID 505
E+R+ L +LK+LP N DL++ L+ L +++ + E N+MT ++LAIVFA L D
Sbjct: 88 EEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPD 147
Query: 506 EGKLPESELAIHSKI 520
++ ++I
Sbjct: 148 SDDELLEDIKKLNEI 162
Score = 105 bits (265), Expect = 1e-26
Identities = 49/107 (45%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
SKI+ELK K D G+ +LE Y VH +A+LLKL+LRE+PEPL+ FE Y+EF+ A +
Sbjct: 29 SKIEELKKKFDRGEDI-DDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIED 87
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E+R+ L +LK+LP N DL++ L+ L +++ + E N+MT ++L
Sbjct: 88 EEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNL 134
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein
for Rho3 and Rho4 and plays a role in low-pH response.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 134 bits (339), Expect = 2e-36
Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 11/189 (5%)
Query: 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE--GK 194
FGVPL L +G VP++V + I IE G+ EGIYR SG S++ +LK D+
Sbjct: 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN 60
Query: 195 LPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSIL 250
+ + E Y +H +A+LLKLF RE+PEPLLT EF+ AA + ++ R L ++
Sbjct: 61 VLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI 120
Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
LP N+ + L+FHLAR+ HE NRM+ N+LAI++ P ++ A D +D+S
Sbjct: 121 NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNA----APDNAADMSF 176
Query: 311 QTLCIELII 319
Q+ IE ++
Sbjct: 177 QSRVIETLL 185
Score = 90.2 bits (224), Expect = 9e-21
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 388 SKIQELKTKIDE--GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
S++ +LK D+ + + E Y +H +A+LLKLF RE+PEPLLT EF+ AA
Sbjct: 45 SRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAA 104
Query: 444 DLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
+ ++ R L ++ LP N+ + L+FHLAR+ HE NRM+ N+LAI++
Sbjct: 105 KIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159
Score = 82.5 bits (204), Expect = 4e-18
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 518 SKIQELKTKIDE--GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAA 573
S++ +LK D+ + + E Y +H +A+LLKLF RE+PEPLLT EF+ AA
Sbjct: 45 SRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAA 104
Query: 574 DLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ ++ R L ++ LP N+ + L+FHLAR+ HE NRM+ N+L
Sbjct: 105 KIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNL 155
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 187
Score = 131 bits (332), Expect = 2e-35
Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKL 195
FG L L + VP V I +E RG+ +GIYR SG + IQ+L+ +D + KL
Sbjct: 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKL 60
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTL 253
+ + +H++ LKLF RE+PEPL + + +F+ A L++ RVS + ++K+L
Sbjct: 61 DLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSL 120
Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
PKPN D ++ L HL RV H E NRMT +LAIVF P +LR
Sbjct: 121 PKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLR 162
Score = 99.4 bits (248), Expect = 4e-24
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Query: 390 IQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 447
IQ+L+ +D + KL + + +H++ LKLF RE+PEPL + + +F+ A L++
Sbjct: 47 IQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDY 106
Query: 448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
RVS + ++K+LPKPN D ++ L HL RV H E NRMT +LAIVF L E
Sbjct: 107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQE 166
Query: 507 GKLPESELAIHSKIQ 521
+A+H Q
Sbjct: 167 ----TGNIAVHMVYQ 177
Score = 90.1 bits (224), Expect = 8e-21
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 520 IQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 577
IQ+L+ +D + KL + + +H++ LKLF RE+PEPL + + +F+ A L++
Sbjct: 47 IQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDY 106
Query: 578 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RVS + ++K+LPKPN D ++ L HL RV H E NRMT +L
Sbjct: 107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL 152
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP
domain and a C-terminal proline-rich region, and it is
active on both Cdc42 and Rac1 but not RhoA. CdGAP is
recruited to focal adhesions via the interaction with
the scaffold protein actopaxin (alpha-parvin). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 195
Score = 124 bits (312), Expect = 1e-32
Identities = 69/194 (35%), Positives = 113/194 (58%), Gaps = 11/194 (5%)
Query: 136 RVFGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
RVFG L++ + G+ VP ++ IE GI GIYR SGI S IQ L+ + D +
Sbjct: 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVD-GIYRLSGIASNIQRLRHEFDSEQ 59
Query: 195 LPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA--ADLTEDRVSTLFSIL 250
+P+L +VY +H +++L KL+ RE+P PLLT++ YE+F A A E+R+ + ++
Sbjct: 60 IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI 119
Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH-----FPAQDAL 305
+ LP P++ +E L+ HL+R+A + M +LAIV+AP +LR + F A
Sbjct: 120 QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAF 179
Query: 306 SDISRQTLCIELII 319
++ Q++ +E I+
Sbjct: 180 MEVRIQSVVVEFIL 193
Score = 90.3 bits (224), Expect = 8e-21
Identities = 44/119 (36%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 442
I S IQ L+ + D ++P+L +VY +H +++L KL+ RE+P PLLT++ YE+F A
Sbjct: 44 IASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAV 103
Query: 443 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
A E+R+ + +++ LP P++ +E L+ HL+R+A + M +LAIV+A L
Sbjct: 104 SAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNL 162
Score = 81.8 bits (202), Expect = 8e-18
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 516 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 572
I S IQ L+ + D ++P+L +VY +H +++L KL+ RE+P PLLT++ YE+F A
Sbjct: 44 IASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAV 103
Query: 573 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
A E+R+ + +++ LP P++ +E L+ HL+R+A + M +L
Sbjct: 104 SAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNL 154
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 123 bits (312), Expect = 1e-32
Identities = 61/189 (32%), Positives = 108/189 (57%), Gaps = 7/189 (3%)
Query: 138 FGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGV L L + +P +V + ++ + TEGI+R+S ++E++ K + G
Sbjct: 6 FGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG- 64
Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVSTLFSILKTL 253
P + VH+ A +LK FLRE+PEPLLTF+ Y++ + ++ E+RV + +L+TL
Sbjct: 65 EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTL 124
Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTL 313
P+ N+ +++ LI L +V+ H + N+MT ++LA+VF P +L + A +LS I+
Sbjct: 125 PEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK--DASMSLSAINPINT 182
Query: 314 CIELIISEQ 322
+ ++ Q
Sbjct: 183 FTKFLLDHQ 191
Score = 91.6 bits (228), Expect = 3e-21
Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
++E++ K + G P + VH+ A +LK FLRE+PEPLLTF+ Y++ + ++
Sbjct: 51 TQVVKEVQQKYNMG-EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVD 109
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
E+RV + +L+TLP+ N+ +++ LI L +V+ H + N+MT ++LA+VF L
Sbjct: 110 KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNL 164
Score = 82.8 bits (205), Expect = 3e-18
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 515 AIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
A ++E++ K + G P + VH+ A +LK FLRE+PEPLLTF+ Y++ + +
Sbjct: 49 ANTQVVKEVQQKYNMG-EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLN 107
Query: 575 LT-EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ E+RV + +L+TLP+ N+ +++ LI L +V+ H + N+MT ++L
Sbjct: 108 VDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL 156
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of chimaerins. Chimaerins are a family
of phorbolester- and diacylglycerol-responsive GAPs
specific for the Rho-like GTPase Rac. Chimaerins exist
in two alternative splice forms that each contain a
C-terminal GAP domain, and a central C1 domain which
binds phorbol esters, inducing a conformational change
that activates the protein; one splice form is lacking
the N-terminal Src homology-2 (SH2) domain. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 194
Score = 121 bits (306), Expect = 7e-32
Identities = 60/188 (31%), Positives = 112/188 (59%), Gaps = 5/188 (2%)
Query: 138 FGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKL 195
+G L+ L + + + P +VD I IE RG+ +EG+YR SG +I+++K D +G+
Sbjct: 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEK 60
Query: 196 PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKT 252
++ VY ++++ LKL+ R++P P++T++ Y +F+ AA ++ ++R+ + L
Sbjct: 61 ADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALML 120
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
LP +++ + L+ HL RV HE+ N+M +L IVF P ++R A L+D+ Q
Sbjct: 121 LPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSALTTLNDMRYQI 180
Query: 313 LCIELIIS 320
L ++L+I+
Sbjct: 181 LIVQLLIT 188
Score = 76.0 bits (187), Expect = 7e-16
Identities = 35/115 (30%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
I+++K D +G+ ++ VY ++++ LKL+ R++P P++T++ Y +F+ AA ++
Sbjct: 47 IEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISN 106
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
++R+ + L LP +++ + L+ HL RV HE+ N+M +L IVF L
Sbjct: 107 PDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTL 161
Score = 66.8 bits (163), Expect = 1e-12
Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
I+++K D +G+ ++ VY ++++ LKL+ R++P P++T++ Y +F+ AA ++
Sbjct: 47 IEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISN 106
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++R+ + L LP +++ + L+ HL RV HE+ N+M +L
Sbjct: 107 PDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENL 153
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 121 bits (305), Expect = 1e-31
Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 137 VFGVPLSQ--LSSSDGKVPSLVDRLITTIELRGIYTEGIYR----KSGIHSKIQELKTKI 190
FGVPL SS + VP +V+ +E RG+ T GIYR + I + +EL
Sbjct: 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG 60
Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFS 248
+ L + V+++++LLK F R++PEPL T E Y +F+ A + + +R+ L
Sbjct: 61 FDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR 118
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI 308
++ +LP +++ ++ LI HL VA + E N+M P +LAIVF P ++R + ++ +
Sbjct: 119 LIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNMETMVTHM 178
Query: 309 SRQTLCIELII 319
Q +E +I
Sbjct: 179 PDQCKIVETLI 189
Score = 85.5 bits (212), Expect = 4e-19
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
I + +EL + L + V+++++LLK F R++PEPL T E Y +F+ A +
Sbjct: 49 ISALQEELNRGGFDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRI 106
Query: 446 TE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
+ +R+ L ++ +LP +++ ++ LI HL VA + E N+M P +LAIVF
Sbjct: 107 EDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159
Score = 79.0 bits (195), Expect = 8e-17
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 508 KLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE 567
++P + AI + +EL + L + V+++++LLK F R++PEPL T E Y
Sbjct: 41 RVPGNNAAISALQEELNRGGFDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYP 98
Query: 568 EFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+F+ A + + +R+ L ++ +LP +++ ++ LI HL VA + E N+M P +L
Sbjct: 99 DFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNL 155
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of the
Ras small GTPase superfamily, through the N-terminal
half of the protein. GMIP contains a C-terminal RhoGAP
domain. GMIP inhibits RhoA function, but is inactive
towards Rac1 and Cdc41. PARG1 interacts with Rap2, also
a member of the Ras small GTPase superfamily whose exact
function is unknown, and shows strong preference for
Rho. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 203
Score = 119 bits (299), Expect = 1e-30
Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 23/204 (11%)
Query: 138 FGVPLSQL--SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
FGV SQ+ D VP ++ + + IE R + +GIYR SG +++++L + GK
Sbjct: 1 FGVDFSQVPRDFPDE-VPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGK- 58
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDR 242
+EL S H ++++LKLFLR++PEPL+ F Y +F+ +A + +
Sbjct: 59 DLVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEV 118
Query: 243 VSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF 299
+ + L+ LP N++ ++ LI HL RVA E N+M+PN+L IVF P ++R R
Sbjct: 119 NRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPG 178
Query: 300 PAQ---DALSDISRQTLCIELIIS 320
A +L D Q +E +I+
Sbjct: 179 DADVSLSSLVDYGYQARLVEFLIT 202
Score = 80.5 bits (199), Expect = 2e-17
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 16/111 (14%)
Query: 406 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDRVST 452
EL S H ++++LKLFLR++PEPL+ F Y +F+ +A + +
Sbjct: 62 ELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRI 121
Query: 453 LFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
+ + L+ LP N++ ++ LI HL RVA E N+M+PN+L IVF L
Sbjct: 122 IRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTL 172
Score = 74.0 bits (182), Expect = 5e-15
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 16/103 (15%)
Query: 536 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDRVST 582
EL S H ++++LKLFLR++PEPL+ F Y +F+ +A + +
Sbjct: 62 ELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRI 121
Query: 583 LFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ + L+ LP N++ ++ LI HL RVA E N+M+PN+L
Sbjct: 122 IRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNL 164
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
ARAPs. ARAPs (also known as centaurin deltas) contain,
besides the RhoGAP domain, an Arf GAP, ankyrin repeat
ras-associating, and PH domains. Since their ArfGAP
activity is PIP3-dependent, ARAPs are considered
integration points for phosphoinositide, Arf and Rho
signaling. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 184
Score = 118 bits (297), Expect = 1e-30
Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 19/166 (11%)
Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL---------KTKIDE 192
L +D +P +VD+ I I G+ +EGIYRK+G +S +++L ++ E
Sbjct: 5 LEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLRE 64
Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSIL 250
G+ Y+VH +A++LK FLR++P+PLLT E + E++ AA+L ++R++ ++
Sbjct: 65 GE--------YTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELI 116
Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ 296
+ LP N ++ LI HL RV H + N+M+ ++LA+VF P + +
Sbjct: 117 RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQT 162
Score = 75.8 bits (187), Expect = 7e-16
Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 19/126 (15%)
Query: 386 IHSKIQEL---------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY 436
+S +++L ++ EG+ Y+VH +A++LK FLR++P+PLLT E +
Sbjct: 42 KNSSVKKLLEAFRKDARSVQLREGE--------YTVHDVADVLKRFLRDLPDPLLTSELH 93
Query: 437 EEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI 494
E++ AA+L ++R++ +++ LP N ++ LI HL RV H + N+M+ ++LA+
Sbjct: 94 AEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLAL 153
Query: 495 VFAQEL 500
VF L
Sbjct: 154 VFGPTL 159
Score = 66.9 bits (164), Expect = 7e-13
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 19/119 (15%)
Query: 515 AIHSKIQEL---------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY 565
+S +++L ++ EG+ Y+VH +A++LK FLR++P+PLLT E
Sbjct: 41 GKNSSVKKLLEAFRKDARSVQLREGE--------YTVHDVADVLKRFLRDLPDPLLTSEL 92
Query: 566 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ E++ AA+L ++R++ +++ LP N ++ LI HL RV H + N+M+ ++L
Sbjct: 93 HAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNL 151
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
Nadrin-like proteins. Nadrin, also named Rich-1, has
been shown to be involved in the regulation of
Ca2+-dependent exocytosis in neurons and recently has
been implicated in tight junction maintenance in
mammalian epithelium. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 116 bits (293), Expect = 5e-30
Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 136 RVFGVPLSQ-LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
VFG PL + L + ++ ++ + + G+ EG++R G SK++ LK +D G
Sbjct: 3 PVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGT 62
Query: 195 L-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILK 251
L+ H +A+ LK +LRE+P+PLLT+ YE++++AA+ ++ R+ ++ IL
Sbjct: 63 FSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN 122
Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL--RQRHFPAQDALSDIS 309
LP+ N D + LI L+++A + N+M+P+++AIV AP +L + A+ A
Sbjct: 123 KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSV 182
Query: 310 RQTLCIELIISE 321
+ELIIS
Sbjct: 183 HVVAIVELIISH 194
Score = 93.3 bits (232), Expect = 1e-21
Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 388 SKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
SK++ LK +D G L+ H +A+ LK +LRE+P+PLLT+ YE++++AA+
Sbjct: 49 SKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKP 108
Query: 447 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI 504
++ R+ ++ IL LP+ N D + LI L+++A + N+M+P+++AIV A L
Sbjct: 109 DEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAK 168
Query: 505 DEGKLPE 511
+EG L E
Sbjct: 169 NEGSLAE 175
Score = 81.3 bits (201), Expect = 1e-17
Identities = 37/108 (34%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 518 SKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
SK++ LK +D G L+ H +A+ LK +LRE+P+PLLT+ YE++++AA+
Sbjct: 49 SKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKP 108
Query: 577 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++ R+ ++ IL LP+ N D + LI L+++A + N+M+P+++
Sbjct: 109 DEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNI 156
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP)
domain for Rho-like GTPases found in GRAF (GTPase
regulator associated with focal adhesion kinase); Graf
is a multi-domain protein, containing SH3 and PH
domains, that binds focal adhesion kinase and influences
cytoskeletal changes mediated by Rho proteins. Graf
exhibits GAP activity toward RhoA and Cdc42, but only
weakly activates Rac1. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 115 bits (289), Expect = 2e-29
Identities = 59/178 (33%), Positives = 103/178 (57%), Gaps = 16/178 (8%)
Query: 154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL------KTKIDEGKLPELELEVYSVHI 207
V + I +E RGI +G+YR G++SK+Q+L G + +L+ + +
Sbjct: 30 KFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKT 88
Query: 208 LANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVSTLFSILKTLPKPNFDLMERLI 265
+ + LK +LR +PEPL+T+E + +F+ AA + E RV+ + S++ LP+ N +++E LI
Sbjct: 89 ITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLI 148
Query: 266 FHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD---ALSDISRQTLCIELIIS 320
HL V+ H + N MT ++L +VF P +LR P ++ A+ DI Q + +E++I
Sbjct: 149 KHLTNVSDHSKKNLMTVSNLGVVFGPTLLR----PQEETVAAIMDIKFQNIVVEILIE 202
Score = 77.4 bits (191), Expect = 3e-16
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 388 SKIQEL------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR 441
SK+Q+L G + +L+ + + + + LK +LR +PEPL+T+E + +F+
Sbjct: 57 SKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFIN 115
Query: 442 AA--DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE 499
AA + E RV+ + S++ LP+ N +++E LI HL V+ H + N MT ++L +VF
Sbjct: 116 AAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPT 175
Query: 500 L 500
L
Sbjct: 176 L 176
Score = 72.4 bits (178), Expect = 1e-14
Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 9/113 (7%)
Query: 518 SKIQEL------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR 571
SK+Q+L G + +L+ + + + + LK +LR +PEPL+T+E + +F+
Sbjct: 57 SKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFIN 115
Query: 572 AA--DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
AA + E RV+ + S++ LP+ N +++E LI HL V+ H + N MT ++L
Sbjct: 116 AAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNL 168
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391
and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain,
and ANXL repeats. ArhGAP20 is activated by Rap1 and
induces inactivation of Rho, which in turn leads to
neurite outgrowth. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 114 bits (288), Expect = 2e-29
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FG PLS + D +P + +++ + +G TEGI+R+S +ELK K++ G E
Sbjct: 2 FGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGV--E 58
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPK 255
++L+ V +LA++LK FLR +P LL+ + YEE++ A D E++++ L +L LP+
Sbjct: 59 VDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPR 118
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL--SDISRQTL 313
PN L++ LI L ++ + E N+M +LA+ AP +L PA L D+ + T
Sbjct: 119 PNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLL---WPPASSELQNEDLKKVTS 175
Query: 314 CIELIIS 320
++ +I
Sbjct: 176 LVQFLIE 182
Score = 82.0 bits (203), Expect = 5e-18
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 392 ELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR 449
ELK K++ G E++L+ V +LA++LK FLR +P LL+ + YEE++ A D E++
Sbjct: 48 ELKEKLNSGV--EVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEK 105
Query: 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++ L +L LP+PN L++ LI L ++ + E N+M +LA+ A
Sbjct: 106 IAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIA 153
Score = 78.9 bits (195), Expect = 7e-17
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 522 ELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR 579
ELK K++ G E++L+ V +LA++LK FLR +P LL+ + YEE++ A D E++
Sbjct: 48 ELKEKLNSGV--EVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEK 105
Query: 580 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++ L +L LP+PN L++ LI L ++ + E N+M +L
Sbjct: 106 IAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNL 148
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of p190-like
proteins. p190, also named RhoGAP5, plays a role in
neuritogenesis and axon branch stability. p190 shows a
preference for Rho, over Rac and Cdc42, and consists of
an N-terminal GTPase domain and a C-terminal GAP domain.
The central portion of p190 contains important
regulatory phosphorylation sites. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 185
Score = 113 bits (284), Expect = 7e-29
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FGVPL+ + +S+ +P +++ + IE G+ TEGIYR SG + + L+ + D+ +
Sbjct: 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLD 60
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPK 255
L + ++V+ +A LK F E+P+PL+ + + E + AA + + R+ L +LK P
Sbjct: 61 LVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPP 120
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCI 315
NFD+ + +I HL +V+ + + N MT +L+I F P ++R F + +ALS I
Sbjct: 121 ENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRP-DFTSMEALSATRIYQTII 179
Query: 316 ELII 319
E I
Sbjct: 180 ETFI 183
Score = 67.5 bits (165), Expect = 5e-13
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
+ + L+ + D+ +L + ++V+ +A LK F E+P+PL+ + + E + AA + +
Sbjct: 44 THLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKIND 103
Query: 448 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
R+ L +LK P NFD+ + +I HL +V+ + + N MT +L+I F
Sbjct: 104 REQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICF 154
Score = 61.7 bits (150), Expect = 6e-11
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
+ + L+ + D+ +L + ++V+ +A LK F E+P+PL+ + + E + AA + +
Sbjct: 44 THLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKIND 103
Query: 578 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
R+ L +LK P NFD+ + +I HL +V+ + + N MT +L
Sbjct: 104 REQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENL 150
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally
cloned as an interaction partner of PTPL1, an
intracellular protein-tyrosine phosphatase. PARG1
interacts with Rap2, also a member of the Ras small
GTPase superfamily whose exact function is unknown, and
shows strong preference for Rho. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 211
Score = 110 bits (277), Expect = 1e-27
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 138 FGVPLSQ--LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
FG +Q S DG +P ++ + + IE R + +GIYR +G S++++L + GK
Sbjct: 1 FGADFAQVAKKSPDG-IPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGK- 58
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA------------------- 236
+EL S H ++N+LKL+LR++PEPL+ F Y EF+ A
Sbjct: 59 DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKK 118
Query: 237 --DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291
++ + L L+ LP PN++ ++ LI HL RV+ E N+M+ ++L I+F P
Sbjct: 119 WPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGP 178
Query: 292 CILRQRHFPAQDALS---DISRQTLCIELII 319
++R R A +LS D Q +EL+I
Sbjct: 179 TLIRPRPTDATVSLSSLVDYPHQARLVELLI 209
Score = 72.9 bits (179), Expect = 1e-14
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---- 443
S++++L + GK +EL S H ++N+LKL+LR++PEPL+ F Y EF+ A
Sbjct: 45 SRVEKLCQAFENGK-DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQ 103
Query: 444 -----------------DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEE 483
++ + L L+ LP PN++ ++ LI HL RV+ E
Sbjct: 104 HVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAE 163
Query: 484 ANRMTPNSLAIVFAQEL 500
N+M+ ++L I+F L
Sbjct: 164 ENKMSASNLGIIFGPTL 180
Score = 66.8 bits (163), Expect = 2e-12
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 25/129 (19%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---- 573
S++++L + GK +EL S H ++N+LKL+LR++PEPL+ F Y EF+ A
Sbjct: 45 SRVEKLCQAFENGK-DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQ 103
Query: 574 -----------------DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEE 613
++ + L L+ LP PN++ ++ LI HL RV+ E
Sbjct: 104 HVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAE 163
Query: 614 ANRMTPNSL 622
N+M+ ++L
Sbjct: 164 ENKMSASNL 172
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP]
protein for Rho-like small GTPases) domain of fungal
BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and
is specifically involved in the control of the initial
assembly of the septin ring in yeast bud formation.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 190
Score = 108 bits (273), Expect = 2e-27
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 137 VFGVPLSQ---LSS---SDGKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTK 189
+FG PL + LSS + +PS+V R I ++ R IY EGI+R SG S I++LK +
Sbjct: 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKER 60
Query: 190 IDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLF 247
+ +L VH +A LLKL+LRE+P +L E + +F R + DR
Sbjct: 61 FNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRAL 120
Query: 248 ---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291
++ LP+ N+DL+ L L ++ H + N+M ++ IVF+P
Sbjct: 121 ELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSP 167
Score = 75.9 bits (187), Expect = 8e-16
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 388 SKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
S I++LK + + +L VH +A LLKL+LRE+P +L E + +F R +
Sbjct: 52 SVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEE 111
Query: 446 TEDRVSTLF---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
DR ++ LP+ N+DL+ L L ++ H + N+M ++ IVF+ L
Sbjct: 112 NHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTL 169
Score = 69.3 bits (170), Expect = 2e-13
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 518 SKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
S I++LK + + +L VH +A LLKL+LRE+P +L E + +F R +
Sbjct: 52 SVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEE 111
Query: 576 TEDRVSTLF---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 618
DR ++ LP+ N+DL+ L L ++ H + N+M
Sbjct: 112 NHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMN 157
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of Bcr
(breakpoint cluster region protein)-like proteins. Bcr
is a multidomain protein with a variety of enzymatic
functions. It contains a RhoGAP and a Rho GEF domain, a
Ser/Thr kinase domain, an N-terminal oligomerization
domain, and a C-terminal PDZ binding domain, in addition
to PH and C2 domains. Bcr is a negative regulator of:
i) RacGTPase, via the Rho GAP domain, ii) the
Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras
binding protein AF-6, and iii) the Wnt signaling pathway
through binding beta-catenin. Bcr can form a complex
with beta-catenin and Tcf1. The Wnt signaling pathway
is involved in cell proliferation, differentiation, and
cell renewal. Bcr was discovered as a fusion partner of
Abl. The Bcr-Abl fusion is characteristic for a large
majority of chronic myelogenous leukemias (CML). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 196
Score = 107 bits (269), Expect = 7e-27
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKLPELELEVYSVHILA 209
KVP +V + + +E RG+ GIYR SG+ + IQ LK D K + L V+ +A
Sbjct: 15 KVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIA 74
Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPKPNFDLMERLIFH 267
LKL+ RE+PEPL T E Y F L++ + S + ++L +LP PN L+ H
Sbjct: 75 GTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHH 134
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
L RVA EE N+M+ ++LA VF P +LR
Sbjct: 135 LKRVAEREEVNKMSLHNLATVFGPTLLR 162
Score = 74.2 bits (182), Expect = 3e-15
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 388 SKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
+ IQ LK D K + L V+ +A LKL+ RE+PEPL T E Y F L+
Sbjct: 45 TDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALS 104
Query: 447 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE-LKTK 503
+ + S + ++L +LP PN L+ HL RVA EE N+M+ ++LA VF L+
Sbjct: 105 DPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPS 164
Query: 504 IDEGKLPESELAI 516
E K+P + +
Sbjct: 165 EKESKIPTNTMTD 177
Score = 67.3 bits (164), Expect = 7e-13
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 518 SKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
+ IQ LK D K + L V+ +A LKL+ RE+PEPL T E Y F L+
Sbjct: 45 TDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALS 104
Query: 577 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ + S + ++L +LP PN L+ HL RVA EE N+M+ ++L
Sbjct: 105 DPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNL 152
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of ArhGAP11A-like proteins. The mouse
homolog of human ArhGAP11A has been detected as a gene
exclusively expressed in immature ganglion cells,
potentially playing a role in retinal development. The
exact function of ArhGAP11A is unknown. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 202
Score = 107 bits (269), Expect = 9e-27
Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 137 VFGVPLSQLSSSD----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
VFGVPL L S G VP + T + + TEG++RKSG + +ELK K++
Sbjct: 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDH-LSTEGLFRKSGSVVRQKELKAKLEG 59
Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKT 252
G E L +A LLK F RE+PEPLL ++ +E L+A +L D ++L T
Sbjct: 60 G---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT 116
Query: 253 --LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
LP + + + L VA N+M ++LA++FAP + F +++ +S
Sbjct: 117 CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNL-----FQSEEGGEKMSS 171
Query: 311 QT 312
T
Sbjct: 172 ST 173
Score = 72.9 bits (179), Expect = 1e-14
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
+ +ELK K++ G E L +A LLK F RE+PEPLL ++ +E L+A +L D
Sbjct: 49 RQKELKAKLEGG---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTD 105
Query: 449 RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
++L T LP + + + L VA N+M ++LA++FA L +
Sbjct: 106 EERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165
Query: 507 G-KLPES 512
G K+ S
Sbjct: 166 GEKMSSS 172
Score = 63.6 bits (155), Expect = 2e-11
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
+ +ELK K++ G E L +A LLK F RE+PEPLL ++ +E L+A +L D
Sbjct: 49 RQKELKAKLEGG---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTD 105
Query: 579 RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++L T LP + + + L VA N+M ++L
Sbjct: 106 EERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNL 151
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 104 bits (262), Expect = 9e-26
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 139 GVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
G S+ +P+L+ + IE RG+ EG+YR SG +++ LK K GK
Sbjct: 4 GELADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPN 63
Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKP 256
L +H++ LK FLR + EPL+TF ++EF+ AA++ ++ + L+ + LP+P
Sbjct: 64 -LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQP 122
Query: 257 NFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
N D + LI HL RVA +M N+LA VF P I
Sbjct: 123 NRDTLAFLILHLQRVA-QSPECKMDINNLARVFGPTI 158
Score = 71.9 bits (177), Expect = 2e-14
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 446
+++ LK K GK L +H++ LK FLR + EPL+TF ++EF+ AA++
Sbjct: 47 EVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDE 105
Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++ + L+ + LP+PN D + LI HL RVA +M N+LA VF
Sbjct: 106 DNSRAALYQAISELPQPNRDTLAFLILHLQRVA-QSPECKMDINNLARVFG 155
Score = 62.7 bits (153), Expect = 2e-11
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 576
+++ LK K GK L +H++ LK FLR + EPL+TF ++EF+ AA++
Sbjct: 47 EVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDE 105
Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++ + L+ + LP+PN D + LI HL RVA +M N+L
Sbjct: 106 DNSRAALYQAISELPQPNRDTLAFLILHLQRVA-QSPECKMDINNL 150
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP6-like proteins. ArhGAP6 shows GAP activity
towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is
often deleted in microphthalmia with linear skin defects
syndrome (MLS); MLS is a severe X-linked developmental
disorder. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 206
Score = 101 bits (253), Expect = 1e-24
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN 210
+VP LV+ +E G+ T GI+R ++++L+ + D G L+ E +SVH +A
Sbjct: 8 QVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAA 66
Query: 211 LLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
LLK F R+MP+PLL E Y F+ A L ++++ L ++ LP N D + RL+ L
Sbjct: 67 LLKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLH 126
Query: 270 RVAYHEE-----------ANRMTPNSLAIVFAPCILRQRHF 299
VA H N+MT +LA +F P +L ++
Sbjct: 127 TVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKS 167
Score = 78.3 bits (193), Expect = 2e-16
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E 447
++++L+ + D G L+ E +SVH +A LLK F R+MP+PLL E Y F+ A L +
Sbjct: 39 RVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPD 97
Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVF 496
+++ L ++ LP N D + RL+ L VA H N+MT +LA +F
Sbjct: 98 EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIF 157
Query: 497 AQELKTKIDEGKLPESELAIH 517
L K G+ + ++
Sbjct: 158 GPNLLHKQKSGEREFVQASLR 178
Score = 68.6 bits (168), Expect = 3e-13
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E 577
++++L+ + D G L+ E +SVH +A LLK F R+MP+PLL E Y F+ A L +
Sbjct: 39 RVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPD 97
Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSL 622
+++ L ++ LP N D + RL+ L VA H N+MT +L
Sbjct: 98 EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNL 153
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of GMIP (Gem
interacting protein). GMIP plays important roles in
neurite growth and axonal guidance, and interacts with
Gem, a member of the RGK subfamily of the Ras small
GTPase superfamily, through the N-terminal half of the
protein. GMIP contains a C-terminal RhoGAP domain. GMIP
inhibits RhoA function, but is inactive towards Rac1 and
Cdc41. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 100 bits (250), Expect = 3e-24
Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 22/202 (10%)
Query: 138 FGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP 196
FGV SQL +VP +V R IE R + +GIYR SG +++++L + G+
Sbjct: 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGR-D 59
Query: 197 ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDR 242
++L +S H + ++LK FL+E+PEP+L F+ Y++F+ A + E+
Sbjct: 60 LVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENI 119
Query: 243 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ 302
+ +L +L LP N++ + L+ HL RVA E N+M+PN+L IVF P +LR
Sbjct: 120 IRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRP--LVGG 177
Query: 303 D----ALSDISRQTLCIELIIS 320
D L D Q +E +IS
Sbjct: 178 DVSMICLLDTGYQAQLVEFLIS 199
Score = 67.5 bits (165), Expect = 7e-13
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 405 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDRV 450
++L +S H + ++LK FL+E+PEP+L F+ Y++F+ A + E+ +
Sbjct: 61 VDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENII 120
Query: 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP 510
+L +L LP N++ + L+ HL RVA E N+M+PN+L IVF L + G +
Sbjct: 121 RSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVS 180
Query: 511 ESEL 514
L
Sbjct: 181 MICL 184
Score = 59.8 bits (145), Expect = 3e-10
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 535 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDRV 580
++L +S H + ++LK FL+E+PEP+L F+ Y++F+ A + E+ +
Sbjct: 61 VDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENII 120
Query: 581 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+L +L LP N++ + L+ HL RVA E N+M+PN+L
Sbjct: 121 RSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNL 162
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 95.2 bits (237), Expect = 2e-22
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 136 RVFGVPLSQLSSS---DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
+VFGVPL +L + + VP++V ++ +E G+ EG++R +G ++ L+ ++D
Sbjct: 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDS 60
Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTEDRV--STLFSI 249
G+ +L E V A+LL+LFL+E+PE L+ ++ D + L +
Sbjct: 61 GEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDL 119
Query: 250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDIS 309
L+ LP N+ L++ L L+ VA NRMT +LA VF P + F + D+
Sbjct: 120 LQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDV-----FHVYTDVEDMK 174
Query: 310 RQTLCIELI 318
Q +C ++
Sbjct: 175 EQEICSRIM 183
Score = 61.3 bits (149), Expect = 7e-11
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTED 448
++ L+ ++D G+ +L E V A+LL+LFL+E+PE L+ ++ D +
Sbjct: 51 VEWLRQRLDSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGE 109
Query: 449 RV--STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
L +L+ LP N+ L++ L L+ VA NRMT +LA VF
Sbjct: 110 DEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159
Score = 55.2 bits (133), Expect = 9e-09
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTED 578
++ L+ ++D G+ +L E V A+LL+LFL+E+PE L+ ++ D +
Sbjct: 51 VEWLRQRLDSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGE 109
Query: 579 RV--STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDA 624
L +L+ LP N+ L++ L L+ VA NRMT +L A
Sbjct: 110 DEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAA 157
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal LRG1-like proteins. Yeast Lrg1p is required for
efficient cell fusion, and mother-daughter cell
separation, possibly through acting as a RhoGAP
specifically regulating 1,3-beta-glucan synthesis. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 213
Score = 94.4 bits (235), Expect = 5e-22
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 19/180 (10%)
Query: 138 FGVPLSQLSSSDG------------KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQE 185
FGVPL L G ++P+L+D +I+ + + EG++RK+G +++E
Sbjct: 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKE 60
Query: 186 LKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 243
L +ID+ +L + LA LLK FLRE+P+PLLTF+ Y ++ + + E+R
Sbjct: 61 LTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERK 120
Query: 244 STLFSILKTLPKPNFDLMERLIFHLARVA-YH----EEANRMTPNSLAIVFAPCILRQRH 298
L + LPK + D ME L L V+ + E ++M ++LA V P IL +
Sbjct: 121 RVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKT 180
Score = 60.8 bits (148), Expect = 2e-10
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 446
+++EL +ID+ +L + LA LLK FLRE+P+PLLTF+ Y ++ + +
Sbjct: 57 RLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDE 116
Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA-YH----EEANRMTPNSLAIVFA 497
E+R L + LPK + D ME L L V+ + E ++M ++LA V
Sbjct: 117 EERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVIT 172
Score = 59.3 bits (144), Expect = 5e-10
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 576
+++EL +ID+ +L + LA LLK FLRE+P+PLLTF+ Y ++ + +
Sbjct: 57 RLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDE 116
Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA--------------YHEEANRMTPNSL 622
E+R L + LPK + D ME L L V+ H A +TPN L
Sbjct: 117 EERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNIL 176
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
(GAP) domain for Rho-like GTPases found in KIAA1688-like
proteins; KIAA1688 is a protein of unknown function that
contains a RhoGAP domain and a myosin tail homology 4
(MyTH4) domain. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 187
Score = 93.6 bits (233), Expect = 5e-22
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 9/172 (5%)
Query: 151 KVPSLVDRLITTI-ELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILA 209
K+P ++ L + L G TEGI+R G ++ ELK ++D+ P LE H+ A
Sbjct: 20 KLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLE--DPHVPA 77
Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
+LLKL+LRE+ EPL+ Y++ + A++ D+ I++ LP N ++ LI L
Sbjct: 78 SLLKLWLRELEEPLIPDALYQQCISASE-DPDKA---VEIVQKLPIINRLVLCYLINFLQ 133
Query: 270 RVAYHE--EANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII 319
A E +M ++LA+VFAP ILR + + ++ + +I
Sbjct: 134 VFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPRVIFENTRKEMSFLRTLI 185
Score = 62.0 bits (151), Expect = 4e-11
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
P ++ ELK ++D+ P LE H+ A+LLKL+LRE+ EPL+ Y++ + A+
Sbjct: 47 PGDIDEVNELKLRVDQWDYPLSGLE--DPHVPASLLKLWLRELEEPLIPDALYQQCISAS 104
Query: 444 DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIVFA 497
+ D+ I++ LP N ++ LI L A E +M ++LA+VFA
Sbjct: 105 E-DPDKA---VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFA 156
Score = 52.8 bits (127), Expect = 6e-08
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
++ ELK ++D+ P LE H+ A+LLKL+LRE+ EPL+ Y++ + A++
Sbjct: 51 DEVNELKLRVDQWDYPLSGLE--DPHVPASLLKLWLRELEEPLIPDALYQQCISASE-DP 107
Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSL 622
D+ I++ LP N ++ LI L A E +M ++L
Sbjct: 108 DKA---VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNL 151
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 92.1 bits (229), Expect = 2e-21
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 152 VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL 211
VP LV++ + I G+ EG++R G + +++L+ D G+ P + + VH +A+L
Sbjct: 22 VPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDT-DVHTVASL 80
Query: 212 LKLFLREMPEPLLTFEYYEEFLRAADL----TEDRVSTLFSILKTLPKPNFDLMERLIFH 267
LKL+LRE+PEP++ + YE+FL A L E + L + LPK N++L+ +
Sbjct: 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRF 140
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
L V + N+M+ +LA VF P ILR
Sbjct: 141 LDEVQSNSSVNKMSVQNLATVFGPNILR 168
Score = 72.5 bits (178), Expect = 1e-14
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---- 445
+++L+ D G+ P + + VH +A+LLKL+LRE+PEP++ + YE+FL A L
Sbjct: 53 VKQLQDAFDAGERPSFDSDT-DVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKD 111
Query: 446 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE-LKTKI 504
E + L + LPK N++L+ + L V + N+M+ +LA VF L+ K+
Sbjct: 112 EEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKV 171
Query: 505 DEGKLPESELAIHSKIQELKT 525
++ P + + +IQ+L T
Sbjct: 172 ED---PATIMEGTPQIQQLMT 189
Score = 64.0 bits (156), Expect = 1e-11
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---- 575
+++L+ D G+ P + + VH +A+LLKL+LRE+PEP++ + YE+FL A L
Sbjct: 53 VKQLQDAFDAGERPSFDSDT-DVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKD 111
Query: 576 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E + L + LPK N++L+ + L V + N+M+ +L
Sbjct: 112 EEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNL 158
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP19-like proteins. The function of ArhGAP19 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 208
Score = 91.4 bits (227), Expect = 5e-21
Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 21/180 (11%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
FG PL++ + + +LI +E + + EG++RK G ++ QEL+ ++ G +
Sbjct: 1 FGAPLTEEGIAQ------IYQLIEYLE-KNLRVEGLFRKPGNSARQQELRDLLNSGTDLD 53
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-------------EDR-V 243
LE + H A +LK FL E+PEPLLT +Y L+ ADL ++R +
Sbjct: 54 LESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLL 113
Query: 244 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD 303
L +L LP+ N +L++ ++ L + A HE+ N+M+ ++LA++F P ++ R+ +D
Sbjct: 114 EALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPED 173
Score = 72.9 bits (179), Expect = 1e-14
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 17/143 (11%)
Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT---- 446
QEL+ ++ G +LE + H A +LK FL E+PEPLLT +Y L+ ADL
Sbjct: 40 QELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE 99
Query: 447 ---------EDR-VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
++R + L +L LP+ N +L++ ++ L + A HE+ N+M+ ++LA++F
Sbjct: 100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLF 159
Query: 497 AQELKTKIDEGKLPESELAIHSK 519
L I L +L +++
Sbjct: 160 TPHL---ICPRNLTPEDLHENAQ 179
Score = 67.1 bits (164), Expect = 1e-12
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT---- 576
QEL+ ++ G +LE + H A +LK FL E+PEPLLT +Y L+ ADL
Sbjct: 40 QELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE 99
Query: 577 ---------EDR-VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++R + L +L LP+ N +L++ ++ L + A HE+ N+M+ ++L
Sbjct: 100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNL 155
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP18-like proteins. The function of ArhGAP18 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 216
Score = 91.3 bits (227), Expect = 5e-21
Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 15/183 (8%)
Query: 137 VFGVPLSQLSSSDGK------VPSLVDRLITTIELRGIYTEGIYRKSGIHSKI----QEL 186
+FGVPLS L D K VP + +LI +E RG+ TEGI R G ++ QEL
Sbjct: 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQEL 60
Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVS 244
+ K EG + H A+LLKLF+RE+P+PLLT EY F L +D++
Sbjct: 61 EAKFYEGTFL---WDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQ 117
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
L ++ LP+ N D ++ L+ L +V HEE N+M ++A++ AP + R ++D
Sbjct: 118 ALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDN 177
Query: 305 LSD 307
S
Sbjct: 178 ESL 180
Score = 61.2 bits (149), Expect = 1e-10
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 486 RMTPNSLAIVFAQELKTKIDEG--------KLPESELAIHSKIQELKTKIDEGKLPELEL 537
+ P S + Q+L K++E ++P S + QEL+ K EG
Sbjct: 15 KKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFL---W 71
Query: 538 EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPKPNF 595
+ H A+LLKLF+RE+P+PLLT EY F L +D++ L ++ LP+ N
Sbjct: 72 DQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANR 131
Query: 596 DLMERLIFHLARVAYHEEANRMT 618
D ++ L+ L +V HEE N+M
Sbjct: 132 DTLKALLEFLQKVVDHEEKNKMN 154
Score = 60.8 bits (148), Expect = 2e-10
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TE 447
QEL+ K EG + H A+LLKLF+RE+P+PLLT EY F L +
Sbjct: 57 CQELEAKFYEGTFL---WDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKK 113
Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
D++ L ++ LP+ N D ++ L+ L +V HEE N+M ++A++ A L
Sbjct: 114 DQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNL 166
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 90.2 bits (224), Expect = 6e-21
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 138 FGVPLSQLSSS----DG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
FG LS DG +P + I +E G+ EGIY+ SGI SK+ ELK +
Sbjct: 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNR 60
Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSIL 250
+ P LE Y +A+LLK +LRE+PEPLLT E F A +R L +L
Sbjct: 61 RESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL 118
Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
K LP+ N L+ LI H+ V E +M +++IV +P +
Sbjct: 119 KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161
Score = 66.7 bits (163), Expect = 1e-12
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
I SK+ ELK + + P LE Y +A+LLK +LRE+PEPLLT E F A
Sbjct: 45 SGIKSKVDELKAAYNRRESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEAC 102
Query: 444 DLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV 495
+R L +LK LP+ N L+ LI H+ V E +M +++IV
Sbjct: 103 GRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIV 156
Score = 62.5 bits (152), Expect = 2e-11
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 516 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
I SK+ ELK + + P LE Y +A+LLK +LRE+PEPLLT E F A
Sbjct: 47 IKSKVDELKAAYNRRESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGR 104
Query: 576 TE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+R L +LK LP+ N L+ LI H+ V E +M ++
Sbjct: 105 PTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNI 153
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
SYD-1_like proteins. Syd-1, first identified and best
studied in C.elegans, has been shown to play an
important role in neuronal development by specifying
axonal properties. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 207
Score = 87.5 bits (217), Expect = 1e-19
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 138 FGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
FGVPLS+L VP ++ + + IE RG+ G+YR G +K +EL+ +
Sbjct: 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNS 60
Query: 195 LP-ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LF 247
EL E+Y ++++ +LK +LRE+PEPL+T + YE L A L D +
Sbjct: 61 AAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTL 120
Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
SI+ LP + L+ HL+ V + E N+MTP +LA+ F P ++ ++ +S
Sbjct: 121 SIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEFSRYGIS 179
Score = 57.5 bits (139), Expect = 2e-09
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 404 ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LFSIL 457
EL E+Y ++++ +LK +LRE+PEPL+T + YE L A L D + SI+
Sbjct: 64 ELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII 123
Query: 458 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
LP + L+ HL+ V + E N+MTP +LA+ F L E
Sbjct: 124 DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQE 172
Score = 50.5 bits (121), Expect = 5e-07
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 534 ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LFSIL 587
EL E+Y ++++ +LK +LRE+PEPL+T + YE L A L D + SI+
Sbjct: 64 ELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII 123
Query: 588 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
LP + L+ HL+ V + E N+MTP +L
Sbjct: 124 DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of DLC1-like
proteins. DLC1 shows in vitro GAP activity towards RhoA
and CDC42. Beside its C-terminal GAP domain, DLC1 also
contains a SAM (sterile alpha motif) and a START
(StAR-related lipid transfer action) domain. DLC1 has
tumor suppressor activity in cell culture. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 220
Score = 81.7 bits (202), Expect = 1e-17
Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 4/179 (2%)
Query: 137 VFGVPLS-QLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
VFGVPL L + +P + + + + + G++RKSG+ S+IQ+L++ I E
Sbjct: 4 VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMI-ESST 62
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTL 253
+ + + +A++LK + R++PEPLLT + E F+ E R+ + + L
Sbjct: 63 DNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLL 122
Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
P N ++++ L++ L+ VA + + N+MT +LA+ AP + +++ Q
Sbjct: 123 PDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNTSRRENSSPARRMQR 181
Score = 63.2 bits (154), Expect = 3e-11
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
S+IQ+L++ I E + + + +A++LK + R++PEPLLT + E F+
Sbjct: 49 SRIQKLRSMI-ESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVP 107
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
E R+ + + LP N ++++ L++ L+ VA + + N+MT +LA+ A L
Sbjct: 108 KEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSL 162
Score = 55.1 bits (133), Expect = 1e-08
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
S+IQ+L++ I E + + + +A++LK + R++PEPLLT + E F+
Sbjct: 49 SRIQKLRSMI-ESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVP 107
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E R+ + + LP N ++++ L++ L+ VA + + N+MT +L
Sbjct: 108 KEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNL 154
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of fungal SAC7 and BAG7-like proteins.
Both proteins are GTPase activating proteins of Rho1,
but differ functionally in vivo: SAC7, but not BAG7, is
involved in the control of Rho1-mediated activation of
the PKC-MPK1 pathway. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 225
Score = 79.8 bits (197), Expect = 6e-17
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 49/228 (21%)
Query: 137 VFGVPL--------SQLSSSD--------GKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
VFGV L +S D G +P +V + ++ EGI+R +G
Sbjct: 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSS 60
Query: 181 SKIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR-- 234
+I+EL+ P+ + + Y+VH A++L+ +L +PEPL+ + YEEF
Sbjct: 61 KRIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPL 118
Query: 235 --------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA 277
L D + ++ LP N L+ L+ LA A + +
Sbjct: 119 RKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDK 178
Query: 278 NRMTPNSLAIVFAPCILRQRHFPAQDALSD---ISRQTLCIELIISEQ 322
N MT ++LA +F P IL P + +SR +E +I Q
Sbjct: 179 NLMTASNLAAIFQPGILSH---PDHEMDPKEYKLSRLV--VEFLIEHQ 221
Score = 57.8 bits (140), Expect = 2e-09
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 389 KIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR--- 441
+I+EL+ P+ + + Y+VH A++L+ +L +PEPL+ + YEEF
Sbjct: 62 RIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119
Query: 442 -------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN 485
L D + ++ LP N L+ L+ LA A + + N
Sbjct: 120 KRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKN 179
Query: 486 RMTPNSLAIVF 496
MT ++LA +F
Sbjct: 180 LMTASNLAAIF 190
Score = 53.2 bits (128), Expect = 6e-08
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 519 KIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR--- 571
+I+EL+ P+ + + Y+VH A++L+ +L +PEPL+ + YEEF
Sbjct: 62 RIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119
Query: 572 -------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN 615
L D + ++ LP N L+ L+ LA A + + N
Sbjct: 120 KRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKN 179
Query: 616 RMTPNSLDA 624
MT ++L A
Sbjct: 180 LMTASNLAA 188
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 71.7 bits (176), Expect = 2e-14
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELE 201
+ S +P +V+ I I L G+ +GI+R SG ++ ++K + G+ P + +
Sbjct: 8 EEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQ 67
Query: 202 VYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPN 257
++ +A +LKL+ R + PL E +E+ + + TE RV + IL TLP+
Sbjct: 68 NDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSV 126
Query: 258 FDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
+M L L ++ + N M P +LAI F P ++
Sbjct: 127 IIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMP 164
Score = 49.7 bits (119), Expect = 7e-07
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 416 ANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPNFDLMERLI 472
A +LKL+ R + PL E +E+ + + TE RV + IL TLP+ +M L
Sbjct: 76 AGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLF 134
Query: 473 FHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQEL-KTKI 527
L ++ + N M P +LAI F L + EG+ +++ + + EL KT I
Sbjct: 135 AFLNHLSQFSDENMMDPYNLAICFGPTL-MPVPEGQ---DQVSCQAHVNELIKTII 186
Score = 42.0 bits (99), Expect = 2e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 546 ANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPNFDLMERLI 602
A +LKL+ R + PL E +E+ + + TE RV + IL TLP+ +M L
Sbjct: 76 AGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLF 134
Query: 603 FHLARVAYHEEANRMTPNSL 622
L ++ + N M P +L
Sbjct: 135 AFLNHLSQFSDENMMDPYNL 154
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in the
p85 isoforms of the regulatory subunit of the class IA
PI3K (phosphatidylinositol 3'-kinase). This domain is
also called Bcr (breakpoint cluster region protein)
homology (BH) domain. Class IA PI3Ks are heterodimers,
containing a regulatory subunit (p85) and a catalytic
subunit (p110) and are activated by growth factor
receptor tyrosine kinases (RTKs); this activation is
mediated by the p85 subunit. p85 isoforms, alpha and
beta, contain a C-terminal p110-binding domain flanked
by two SH2 domains, an N-terminal SH3 domain, and a
RhoGAP domain flanked by two proline-rich regions. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 59.9 bits (145), Expect = 3e-10
Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
P L+ +L+ IE +G+ + +YR + S + EL+ +I + ++LE + V LA+ L
Sbjct: 16 PPLLIKLVEAIEKKGLESSTLYR-TQSSSSLTELR-QILDCDAASVDLEQFDVAALADAL 73
Query: 213 KLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFH 267
K +L ++P P++ Y E + A +++ L +++ LP + ++ L+ H
Sbjct: 74 KRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKH 133
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQL 323
R+ N ++ +LA +F+P + R PA + IE++I+ +
Sbjct: 134 FFRLCQSSSKNLLSARALAEIFSPLLF--RFQPASSDSPEFH--IRIIEVLITSEW 185
Score = 42.9 bits (101), Expect = 1e-04
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
Q S + EL+ +I + ++LE + V LA+ LK +L ++P P++ Y E + A
Sbjct: 39 TQSSSSLTELR-QILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRA 97
Query: 444 ---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQ 498
+++ L +++ LP + ++ L+ H R+ N ++ +LA +F+
Sbjct: 98 QEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSP 157
Query: 499 EL 500
L
Sbjct: 158 LL 159
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 527 IDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTL 583
I + ++LE + V LA+ LK +L ++P P++ Y E + A +++ L
Sbjct: 51 ILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLL 110
Query: 584 FSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDA 624
+++ LP + ++ L+ H R+ N ++ +L
Sbjct: 111 RKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAE 153
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in OCRL1-like proteins. OCRL1 (oculocerebrorenal
syndrome of Lowe 1)-like proteins contain two conserved
domains: a central inositol polyphosphate 5-phosphatase
domain and a C-terminal Rho GAP domain, this GAP domain
lacks the catalytic residue and therefore maybe
inactive. OCRL-like proteins are type II inositol
polyphosphate 5-phosphatases that can hydrolyze lipid
PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and
Ins(1,3,4,5)P4, but their individual specificities vary.
The functionality of the RhoGAP domain is still unclear.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 220
Score = 59.7 bits (145), Expect = 4e-10
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 158 RLITTIELRGIYTEGIYRKSGIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLK 213
RL+ + RG+ EG++ + G+ S+ + E++ +D G S +A L
Sbjct: 56 RLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPF---NSPGSAESVAEALL 112
Query: 214 LFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAY 273
LFL +P+P++ + YE L A E+ + I +LP + ++ L L +
Sbjct: 113 LFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFVYLCSFLRELLS 170
Query: 274 HEEANRMTPNSLAIVFAPCILR 295
+ N+LA +F +LR
Sbjct: 171 ESADRGLDENTLATIFGRVLLR 192
Score = 47.3 bits (113), Expect = 5e-06
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 410 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLME 469
S +A L LFL +P+P++ + YE L A E+ + I +LP + ++
Sbjct: 102 GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFV 159
Query: 470 RLIFHLARVAYHEEANRMTPNSLAIVFA 497
L L + + N+LA +F
Sbjct: 160 YLCSFLRELLSESADRGLDENTLATIFG 187
Score = 41.2 bits (97), Expect = 6e-04
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 540 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLME 599
S +A L LFL +P+P++ + YE L A E+ + I +LP + ++
Sbjct: 102 GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFV 159
Query: 600 RLIFHLARVAYHEEANRMTPNSL 622
L L + + N+L
Sbjct: 160 YLCSFLRELLSESADRGLDENTL 182
>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein
for Cdc42 and Rho5. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 212
Score = 58.5 bits (142), Expect = 9e-10
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 35/186 (18%)
Query: 138 FGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSK------IQELKTKI 190
FGV L D K VP +V +++ ++ + + + +L+ +
Sbjct: 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLL 60
Query: 191 DEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---------DL 238
++ K P+ E+ + + +A++LKL+L E+P+ L+ + Y+ +R+ D
Sbjct: 61 NKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYD-LIRSLYSAYPPSQEDS 119
Query: 239 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS---------LAIVF 289
R+ L S L LPK + ++ +I H R+ +T LA
Sbjct: 120 DTARIQGLQSTLSQLPKSHIATLDAIITHFYRLI------EITKMGESEEEYADKLATSL 173
Query: 290 APCILR 295
+ ILR
Sbjct: 174 SREILR 179
Score = 57.3 bits (139), Expect = 3e-09
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 367 SANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEV---YSVHILANLLKLFL 423
N +R+ + P + H +L+ +++ K P+ E+ + + +A++LKL+L
Sbjct: 34 LINDEVRRNVWTDPVSLKETH----QLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYL 89
Query: 424 REMPEPLLTFEYYEEFLRAA---------DLTEDRVSTLFSILKTLPKPNFDLMERLIFH 474
E+P+ L+ + Y+ +R+ D R+ L S L LPK + ++ +I H
Sbjct: 90 LELPDSLIPHDIYD-LIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITH 148
Query: 475 LAR 477
R
Sbjct: 149 FYR 151
Score = 54.3 bits (131), Expect = 3e-08
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 523 LKTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA------ 573
L+ +++ K P+ E+ + + +A++LKL+L E+P+ L+ + Y+ +R+
Sbjct: 56 LRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYD-LIRSLYSAYPP 114
Query: 574 ---DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLAR 607
D R+ L S L LPK + ++ +I H R
Sbjct: 115 SQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYR 151
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1
domain). This domain is also known as the Protein
kinase C conserved region 1 (C1) domain.
Length = 53
Score = 44.8 bits (106), Expect = 2e-06
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
PT C+ C ++ L C C H++C++ + ECG
Sbjct: 11 PTFCDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVPPECGC 52
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) .
Cysteine-rich zinc binding domain. Some members of this
domain family bind phorbol esters and diacylglycerol,
some are reported to bind RasGTP. May occur in tandem
arrangement. Diacylglycerol (DAG) is a second messenger,
released by activation of Phospholipase D. Phorbol
Esters (PE) can act as analogues of DAG and mimic its
downstream effects in, for example, tumor promotion.
Protein Kinases C are activated by DAG/PE, this
activation is mediated by their N-terminal conserved
region (C1). DAG/PE binding may be phospholipid
dependent. C1 domains may also mediate DAG/PE signals in
chimaerins (a family of Rac GTPase activating proteins),
RasGRPs (exchange factors for Ras/Rap1), and Munc13
isoforms (scaffolding proteins involved in exocytosis).
Length = 50
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGEC 122
H K PT C++C W + + L C C+ CH+KC ++ C
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSI-WGLFKQGLRCSWCKVKCHKKCADKVPPSC 50
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 35.5 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C IC F+ P+ V C H R C + +
Sbjct: 2 CPICLEEFREPV----VLLPCGHVFCRSCIDKWL 31
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger. The plant homeodomain (PHD)
finger is a C4HC3 zinc-finger-like motif found in
nuclear proteins thought to be involved in epigenetics
and chromatin-mediated transcriptional regulation. The
PHD finger binds two zinc ions using the so-called
'cross-brace' motif and is thus structurally related to
the RING finger and the FYVE finger. It is not yet known
if PHD fingers have a common molecular function. Several
reports suggest that it can function as a
protein-protein interacton domain and it was recently
demonstrated that the PHD finger of p300 can cooperate
with the adjacent BROMO domain in nucleosome binding in
vitro. Other reports suggesting that the PHD finger is a
ubiquitin ligase have been refuted as these domains were
RING fingers misidentified as PHD fingers.
Length = 47
Score = 34.9 bits (80), Expect = 0.006
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
C +C +L C C H+ C
Sbjct: 2 CSVCGKPDDG--GELLQCDGCDRWYHQTCL 29
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains
(Cysteine-rich domains). Some bind phorbol esters and
diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Length = 50
Score = 34.4 bits (79), Expect = 0.011
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 81 NIPTACEICN----SLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
PT C +C FK + C C+ CH+KC ++ C
Sbjct: 9 TKPTFCCVCRKSIWGSFKQGLR----CSECKVKCHKKCADKVPKAC 50
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 33.6 bits (77), Expect = 0.012
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C IC + + V C HT R C + +
Sbjct: 1 CPICLEEY----LKDPVILPCGHTFCRSCIRKWL 30
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 34.0 bits (78), Expect = 0.012
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM---GEC 122
C IC L + +V C H R+C R + +C
Sbjct: 5 CPICLDLLR----DPVVLTPCGHVFCRECILRYLKKKSKC 40
>gnl|CDD|201356 pfam00628, PHD, PHD-finger. PHD folds into an interleaved type of
Zn-finger chelating 2 Zn ions in a similar manner to
that of the RING and FYVE domains. Several PHD fingers
have been identified as binding modules of methylated
histone H3.
Length = 51
Score = 34.0 bits (78), Expect = 0.014
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
C +C + +L+C C H C
Sbjct: 2 CAVCGKVD--DDGELLLCDGCDRWFHLACL 29
>gnl|CDD|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1. RING
finger family found sporadically in bacteria and
archaea, and associated in gene neighborhoods with other
components of the ubiquitin-based signaling and
degradation system, including ubiquitin, the E1 and E2
proteins and the JAB-like metallopeptidase. The
bacterial versions contain transmembrane helices.
Length = 55
Score = 33.6 bits (77), Expect = 0.022
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR 126
T C +C FK P + ++VC C HR+C+ + GEC L
Sbjct: 6 TRCPVCGKKFK-PGDDIVVCPECGAPYHRECWEK-AGECILYG 46
>gnl|CDD|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206). This is
a family of cysteine-rich proteins. Many members also
carry a pleckstrin-homology domain, pfam00169.
Length = 202
Score = 34.5 bits (80), Expect = 0.088
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 86 CEICNS---LFKWPIERMLVCQNCRHTCHRKCYTRI 118
CE C++ +F + + C+ C H++CY
Sbjct: 155 CEFCDNDEVIFPFQTDTTSRCEGCGAVFHKECYESS 190
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.9 bits (78), Expect = 0.31
Identities = 55/293 (18%), Positives = 109/293 (37%), Gaps = 39/293 (13%)
Query: 294 LRQRHFPAQDALSDISRQTLCIEL---IISEQLKKLADALSDISRQTLCIELIISEQLKK 350
+ R LSD SR+ IE + ++ +KL + L ++ +E I +
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
Query: 351 LAVTLKDIDDLDTARHSANTRIRQI-RSSKPKPFPQIHSKIQELKTKID--EGKLPELEL 407
L I++L+ H + + P+I +++ +L+ ++ E +L E+E
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
Query: 408 EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA-DLTEDRVSTLFSILKTLPKPNFD 466
++ + + L+ ++E+ E + + + + + + L L+ L D
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
Query: 467 LMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTK 526
L RL +LK + DE + EL KI+EL+ +
Sbjct: 880 LESRLG--------------------------DLKKERDELEAQLREL--ERKIEELEAQ 911
Query: 527 IDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDR 579
I++ + EL+ + L L E E EE L D+ +
Sbjct: 912 IEKKRKRLSELKA-KLEALEEELSEIEDPKGEDE---EIPEEELSLEDVQAEL 960
>gnl|CDD|239870 cd04405, RhoGAP_BRCC3-like, RhoGAP_BRCC3-like: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of BRCC3-like proteins. This subgroup
also contains two groups of closely related proteins,
BRCC3 and DEPDC7, which both contain a C-terminal
RhoGAP-like domain and an N-terminal DEP (Disheveled,
Egl-10, and Pleckstrin) domain. The function(s) of
BRCC3 and DEPDC7 are unknown. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 235
Score = 32.3 bits (74), Expect = 0.57
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 219 MPEPLLTFEYYEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAY 273
+ EPLLTF ++ F+ +L E + L L LP + + RL+ +AR A
Sbjct: 119 LKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAK 178
Query: 274 HEE 276
++
Sbjct: 179 NDM 181
Score = 32.3 bits (74), Expect = 0.57
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 426 MPEPLLTFEYYEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAY 480
+ EPLLTF ++ F+ +L E + L L LP + + RL+ +AR A
Sbjct: 119 LKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAK 178
Query: 481 HEE 483
++
Sbjct: 179 NDM 181
Score = 32.3 bits (74), Expect = 0.57
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 556 MPEPLLTFEYYEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAY 610
+ EPLLTF ++ F+ +L E + L L LP + + RL+ +AR A
Sbjct: 119 LKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAK 178
Query: 611 HEE 613
++
Sbjct: 179 NDM 181
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 29.0 bits (65), Expect = 0.62
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C IC K P+ +L C H KC +
Sbjct: 1 CPICLEEPKDPV-TIL---PCGHLFCSKCILSWL 30
>gnl|CDD|143545 cd07171, NR_DBD_ER, DNA-binding domain of estrogen receptors (ER)
is composed of two C4-type zinc fingers. DNA-binding
domain of estrogen receptors (ER) is composed of two
C4-type zinc fingers. Each zinc finger contains a group
of four Cys residues which coordinates a single zinc
atom. ER interacts with specific DNA sites upstream of
the target gene and modulates the rate of
transcriptional initiation. Estrogen receptor is a
transcription regulator that mediates the biological
effects of hormone estrogen. The binding of estrogen to
the receptor triggers the dimerization and the binding
of the receptor dimer to estrogen response element,
which is a palindromic inverted repeat:
5'GGTCAnnnTGACC-3', of target genes. Through ER,
estrogen regulates development, reproduction and
homeostasis. Like other members of the nuclear receptor
(NR) superfamily of ligand-activated transcription
factors, ER has a central well-conserved DNA binding
domain (DBD), a variable N-terminal domain, a
non-conserved hinge and a C-terminal ligand binding
domain (LBD).
Length = 82
Score = 29.9 bits (67), Expect = 0.92
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 21/60 (35%)
Query: 85 ACEICNSLFKWPIE------------------RMLVCQNCRHTCHRKCYTRIMGECGLAR 126
+CE C + FK I+ R CQ CR RKCY M + G+ R
Sbjct: 22 SCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRL---RKCYEVGMMKGGIRR 78
>gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which
has been shown to bind to DNA in the human nuclear
transcriptional repressor NF-X1. The zinc finger can be
characterized by the pattern
C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The
NF-X1 zinc finger co-occurs with atypical RING-finger
and R3H domains. Human NF-X1 is involved in the
transcriptional repression of major histocompatibility
complex class II genes. The drosophila homolog encoded
by stc (shuttle craft) plays a role in embryonic
development, and the Arabidopsis homologue AtNFXL1 has
been shown to function in the response to trichothecene
and other defense mechanisms.
Length = 49
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 14/39 (35%)
Query: 86 CE-ICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
C +C + L C H C + C+ G C
Sbjct: 1 CGEVCG--------KPLPC--GNHKCEQLCHE---GPCP 26
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General
function prediction only].
Length = 669
Score = 31.1 bits (70), Expect = 1.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 85 ACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
C C S ++ C C H+ CY
Sbjct: 195 ICTKCTSTHNENSNAIVFCDGCEICVHQSCY 225
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 27.7 bits (62), Expect = 2.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C IC F+ +V C H H++C
Sbjct: 3 CPICLDEFEP--GEEVVVLPCGHVFHKEC 29
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 30.7 bits (70), Expect = 2.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 457 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELK 501
+K LPK L HL R Y E+ NR +VF EL+
Sbjct: 185 IKKLPKI-------LALHLKRFKYDEQLNRYIKLFYRVVFPLELR 222
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as twitching
motility.
Length = 198
Score = 30.0 bits (68), Expect = 3.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 487 MTPNSLAIVFAQELKTKIDEGKLPESELAIHSK-IQELKTKIDEGKLPELE 536
SL V +Q+L K D G++P E+ I++ ++ L I EGKL +++
Sbjct: 133 QLAESLKAVISQQLLPKKDGGRVPAFEILINTPAVRNL---IREGKLHQIK 180
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 30.4 bits (69), Expect = 3.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 295 RQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDI 333
+ H+PA D L+ +SR + I+SE+ K+LA L ++
Sbjct: 319 AKNHYPAIDVLASVSR---VMNEIVSEEHKELAGKLREL 354
>gnl|CDD|238232 cd00398, Aldolase_II, Class II Aldolase and Adducin head
(N-terminal) domain. Aldolases are ubiquitous enzymes
catalyzing central steps of carbohydrate metabolism.
Based on enzymatic mechanisms, this superfamily has been
divided into two distinct classes (Class I and II).
Class II enzymes are further divided into two
sub-classes A and B. This family includes class II A
aldolases and adducins which has not been ascribed any
enzymatic function. Members of this class are primarily
bacterial and eukaryotic in origin and include
L-fuculose-1-phosphate, L-rhamnulose-1-phosphate
aldolases and L-ribulose-5-phosphate 4-epimerases. They
all share the ability to promote carbon-carbon bond
cleavage and stabilize enolate intermediates using
divalent cations.
Length = 209
Score = 29.6 bits (67), Expect = 3.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 478 VAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI 520
V Y E MT + L +V AQ K+ EGK P SE +H +
Sbjct: 44 VDYEE----MTASDLVVVDAQ---GKVVEGKKPSSETPLHLAL 79
>gnl|CDD|239866 cd04401, RhoGAP_fMSB1, RhoGAP_fMSB1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal MSB1-like proteins. Msb1 was originally
identified as a multicopy suppressor of temperature
sensitive cdc42 mutation. Msb1 is a positive regulator
of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis,
both pathways involve Rho1 regulation. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 198
Score = 29.2 bits (66), Expect = 4.3
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 205 VHILANLLKLFLREMPEPLLT-FEYYEEFLRA-ADLTEDRVSTLFSILKTLPKPN----- 257
H L +LK +P + +E YEEF + L + + L P
Sbjct: 70 PHTLILVLKWIWSRLPGSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASIL 129
Query: 258 FDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291
+D + L + +A H N M+ L+ + P
Sbjct: 130 YDFFDLL----SSIAAHSSVNGMSGRKLSKMAGP 159
Score = 29.2 bits (66), Expect = 4.8
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 412 VHILANLLKLFLREMPEPLLT-FEYYEEFLRA-ADLTEDRVSTLFSILKTLPKPN----- 464
H L +LK +P + +E YEEF + L + + L P
Sbjct: 70 PHTLILVLKWIWSRLPGSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASIL 129
Query: 465 FDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQ 498
+D + L + +A H N M+ L+ +
Sbjct: 130 YDFFDLL----SSIAAHSSVNGMSGRKLSKMAGP 159
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 29.6 bits (67), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 18 MGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKR 50
N GF + M GG+ + R GK++R
Sbjct: 238 ESSNDLSGFSVKKMKGGGGAGKGGNKRPGKSRR 270
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors
including the Pad-1 protein (N. crassa), CAPER (M.
musculus) and CC1.3 (H.sapiens). These proteins are
characterized by an N-terminal arginine-rich, low
complexity domain followed by three (or in the case of
4 H. sapiens paralogs, two) RNA recognition domains
(rrm: pfam00706). These splicing factors are closely
related to the U2AF splicing factor family (TIGR01642).
A homologous gene from Plasmodium falciparum was
identified in the course of the analysis of that genome
at TIGR and was included in the seed.
Length = 457
Score = 29.1 bits (65), Expect = 7.7
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 33 SRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKI 79
RG + +R++ R + + SR++ DR Y G S+
Sbjct: 6 ERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRS 52
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 29.4 bits (66), Expect = 7.9
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
Query: 149 DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE--LELEVYSVH 206
D PSL+D LI T E+ GI I ++ S + + KL L+L+ +
Sbjct: 403 DNSNPSLIDSLIPTSEVCGI-PLIISKEFPPFSA--DSNLLNADDKLEYWLLQLKDTVAN 459
Query: 207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIF 266
IL NLL + ++ TF EE + ++ N DL +LI
Sbjct: 460 ILENLLVTYRSDI-----TFPNLEELITLHKFISSEQELFMTVFIDQDSNNGDLRIKLIE 514
Query: 267 HLARVAYH 274
L R+ Y
Sbjct: 515 VLLRIIYR 522
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 28.3 bits (63), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 33 SRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDR 67
SR S + + RSGK KE+++ + + + +EDR
Sbjct: 151 SRKKSDDEHRKRSGK---QKEKRRVEDSQKHKEDR 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,430,509
Number of extensions: 3290376
Number of successful extensions: 3994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3833
Number of HSP's successfully gapped: 185
Length of query: 625
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 522
Effective length of database: 6,369,140
Effective search space: 3324691080
Effective search space used: 3324691080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)