RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10137
(625 letters)
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 270 bits (693), Expect = 3e-84
Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 12/298 (4%)
Query: 32 NSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYL--GHELESKIINIPTACEIC 89
+ E + + ++A+ K+ ++I H + P CE C
Sbjct: 167 VLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYC 226
Query: 90 NSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSD 149
+ I + + C +C H++C + +C H +V+ L+ L +
Sbjct: 227 ANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLKHVKKVYSCDLTTLVKAH 281
Query: 150 G-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYS-VH 206
K P +VD I IE RG+ +EG+YR SG I+++K D ++ + +Y ++
Sbjct: 282 TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 341
Query: 207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERL 264
I+ LKL+ R++P PL+T++ Y +F+ +A + ++++ TL LK LP + + + L
Sbjct: 342 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYL 401
Query: 265 IFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
+ HL RV HE+ N M +L IVF P ++R A AL+DI Q L +EL+I +
Sbjct: 402 MAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNE 459
Score = 137 bits (346), Expect = 5e-35
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 388 SKIQELKTKIDEGK-LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
I+++K D ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 314 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 373
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++++ TL LK LP + + + L+ HL RV HE+ N M +L IVF
Sbjct: 374 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 427
Score = 125 bits (316), Expect = 5e-31
Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 518 SKIQELKTKIDEGK-LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
I+++K D ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 314 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 373
Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++++ TL LK LP + + + L+ HL RV HE+ N M +L
Sbjct: 374 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 422
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 231 bits (591), Expect = 1e-72
Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
SS + FG+PL L +++ +P V++ + IE G+ TEG+YR SG + +
Sbjct: 2 SSGSSGWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNI 61
Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS 244
+ + D+ L +V+ +A LK F ++P+PL+ + + E L AA + +R+
Sbjct: 62 QKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 121
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
L I+K N+D+ +I HL RV+ + N MT ++L+I F P ++R F ++
Sbjct: 122 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPD-FENREF 180
Query: 305 LSDISRQTLCIELIISE 321
LS +E I +
Sbjct: 181 LSTTKIHQSVVETFIQQ 197
Score = 145 bits (367), Expect = 3e-40
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
+ ++ + D+ L +V+ +A LK F ++P+PL+ + + E L AA +
Sbjct: 56 TDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPD 115
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+R+ L I+K N+D+ +I HL RV+ + N MT ++L+I F
Sbjct: 116 KTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFW 167
Score = 133 bits (336), Expect = 5e-36
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
+ ++ + D+ L +V+ +A LK F ++P+PL+ + + E L AA +
Sbjct: 56 TDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPD 115
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+R+ L I+K N+D+ +I HL RV+ + N MT ++L
Sbjct: 116 KTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 227 bits (582), Expect = 3e-71
Identities = 67/196 (34%), Positives = 113/196 (57%), Gaps = 5/196 (2%)
Query: 132 SHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
H +V+ L+ L + K P +VD I IE RG+ +EG+YR SG I+++K
Sbjct: 3 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 62
Query: 191 D-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTL 246
D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A + ++++ TL
Sbjct: 63 DRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETL 122
Query: 247 FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
LK LP + + + L+ HL RV HE+ N M +L IVF P ++R A AL+
Sbjct: 123 HEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 182
Query: 307 DISRQTLCIELIISEQ 322
DI Q L +EL+I +
Sbjct: 183 DIRYQRLVVELLIKNE 198
Score = 138 bits (350), Expect = 5e-38
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 388 SKIQELKTKID-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 53 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 112
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++++ TL LK LP + + + L+ HL RV HE+ N M +L IVF
Sbjct: 113 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 166
Score = 126 bits (320), Expect = 8e-34
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 518 SKIQELKTKID-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
I+++K D +G+ ++ + +Y ++I+ LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 53 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 112
Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++++ TL LK LP + + + L+ HL RV HE+ N M +L
Sbjct: 113 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 227 bits (580), Expect = 2e-70
Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 4/218 (1%)
Query: 107 RHTCHRKCYTRIMGECGLARSSAARSHG-HRVFGVPLSQLSSSDGKVPSLVDRLITTIEL 165
R R R S ++ FGVPL+ + + + +P ++R I IE
Sbjct: 22 RRNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEA 81
Query: 166 RGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLT 225
G+ TEGIYR SG S+++ L+ + D+ +L + ++V+ +A +K F E+P+PL+
Sbjct: 82 TGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVP 141
Query: 226 FEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN 283
+ + + A + E ++ L +LK PK N ++ + +I HL +V+++ + N MT
Sbjct: 142 YNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSE 201
Query: 284 SLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISE 321
+L+I F P ++R F DAL+ IEL I +
Sbjct: 202 NLSICFWPTLMRPD-FSTMDALTATRTYQTIIELFIQQ 238
Score = 143 bits (363), Expect = 3e-39
Identities = 30/112 (26%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
S+++ L+ + D+ +L + ++V+ +A +K F E+P+PL+ + + + A +
Sbjct: 97 SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E ++ L +LK PK N ++ + +I HL +V+++ + N MT +L+I F
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFW 208
Score = 132 bits (333), Expect = 4e-35
Identities = 28/107 (26%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
S+++ L+ + D+ +L + ++V+ +A +K F E+P+PL+ + + + A +
Sbjct: 97 SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E ++ L +LK PK N ++ + +I HL +V+++ + N MT +L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 219 bits (560), Expect = 7e-68
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 5/190 (2%)
Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
++FG L ++ + VP V + I +E RG+ +GIYR SG + IQ+L+ +++ +
Sbjct: 18 QIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEE 77
Query: 195 LPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILK 251
L + + +H++ LK+F RE+PEPL + ++E+F+ A R+ + S+++
Sbjct: 78 KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQ 137
Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQ 311
LP PN D M+ L HL ++ N M+ SL IVF P +LR + + + Q
Sbjct: 138 KLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAEN-ETGNMAIHMVYQ 196
Query: 312 TLCIELIISE 321
EL++SE
Sbjct: 197 NQIAELMLSE 206
Score = 141 bits (357), Expect = 1e-38
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 387 HSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
+ IQ+L+ +++ + L + + +H++ LK+F RE+PEPL + ++E+F+ A
Sbjct: 63 LATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK 122
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
R+ + S+++ LP PN D M+ L HL ++ N M+ SL IVF
Sbjct: 123 QDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFG 176
Score = 129 bits (327), Expect = 1e-34
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 517 HSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
+ IQ+L+ +++ + L + + +H++ LK+F RE+PEPL + ++E+F+ A
Sbjct: 63 LATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK 122
Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
R+ + S+++ LP PN D M+ L HL ++ N M+ SL
Sbjct: 123 QDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 217 bits (555), Expect = 2e-67
Identities = 54/201 (26%), Positives = 103/201 (51%), Gaps = 6/201 (2%)
Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
SS ++FG+ L + +D +P V ++ + +G T+GI+R+S +EL
Sbjct: 2 SSPTSPMPGQLFGISLPNICENDN-LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCREL 60
Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS 244
K K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D E++++
Sbjct: 61 KEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKIN 118
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQD 303
T+ +L LP+ N L+ L L + H +N+MT +LA+ AP IL +
Sbjct: 119 TVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPEL 178
Query: 304 ALSDISRQTLCIELIISEQLK 324
+ +L I+ +I L+
Sbjct: 179 ENEFTKKVSLLIQFLIENCLR 199
Score = 140 bits (356), Expect = 9e-39
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
+ELK K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D
Sbjct: 55 KSCRELKEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGN 112
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E++++T+ +L LP+ N L+ L L + H +N+MT +LA+ A
Sbjct: 113 DEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA 164
Score = 129 bits (326), Expect = 1e-34
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
+ELK K++ G E+ L+ S+ ++A++LK FLR +P + + + Y+ ++ D
Sbjct: 55 KSCRELKEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGN 112
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E++++T+ +L LP+ N L+ L L + H +N+MT +L
Sbjct: 113 DEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNL 159
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 215 bits (549), Expect = 1e-66
Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 7/193 (3%)
Query: 134 GHRVFGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
++ FGV L L + +P ++ + ++ + TEGI+R+S ++E++ K
Sbjct: 5 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKY 64
Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSI 249
+ G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +
Sbjct: 65 NMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 123
Query: 250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDIS 309
L+TLP+ N+ ++ L L +++ H + N+MT +LA+VF P +L + A L I+
Sbjct: 124 LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAIN 181
Query: 310 RQTLCIELIISEQ 322
+ ++ Q
Sbjct: 182 PINTFTKFLLDHQ 194
Score = 140 bits (356), Expect = 7e-39
Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
++E++ K + G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 55 QVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 113
Query: 448 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
RV +L+TLP+ N+ ++ L L +++ H + N+MT +LA+VF
Sbjct: 114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 164
Score = 129 bits (326), Expect = 1e-34
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
++E++ K + G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 55 QVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 113
Query: 578 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 215 bits (550), Expect = 3e-66
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Query: 134 GHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
G RVFG L + + G +VP ++ IE GI +GIYR SG+ S IQ L+ + D
Sbjct: 18 GERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDS 76
Query: 193 GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFS 248
+P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A E+R+ +
Sbjct: 77 EHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD 136
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-----QRHFPAQD 303
+++ LP P++ +E L+ HL+ +A + M +LAIV+AP +LR F
Sbjct: 137 VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTA 196
Query: 304 ALSDISRQTLCIELIISE 321
A ++ Q++ +E I++
Sbjct: 197 AFMEVRIQSVVVEFILNH 214
Score = 141 bits (358), Expect = 9e-39
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 388 SKIQELKTKIDEGKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
S IQ L+ + D +P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A
Sbjct: 65 SNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E+R+ + +++ LP P++ +E L+ HL+ +A + M +LAIV+A
Sbjct: 125 ATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 178
Score = 129 bits (327), Expect = 1e-34
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 518 SKIQELKTKIDEGKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
S IQ L+ + D +P+L E Y +H + +L KL+ RE+P PLLT++ YE+F A
Sbjct: 65 SNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124
Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E+R+ + +++ LP P++ +E L+ HL+ +A + M +L
Sbjct: 125 ATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 216 bits (551), Expect = 3e-66
Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 8/221 (3%)
Query: 106 CRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQL---SSSDGKVPSLVDRLITT 162
++ K + ++ FGV L L + +P ++ +
Sbjct: 14 LKYDDFLKSTQKSPATAP-KPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAY 72
Query: 163 IELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP 222
++ + TEGI+R+S ++E++ K + G + + + +H+ A +LK FLRE+PEP
Sbjct: 73 LQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEP 131
Query: 223 LLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 281
LLTF+ Y + ++ E RV +L+TLP+ N+ ++ L L +++ H + N+MT
Sbjct: 132 LLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMT 191
Query: 282 PNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
+LA+VF P +L + A L I+ + ++ Q
Sbjct: 192 NTNLAVVFGPNLLWAK--DAAITLKAINPINTFTKFLLDHQ 230
Score = 139 bits (352), Expect = 8e-38
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
++E++ K + G + + + +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 91 QVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 149
Query: 448 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
RV +L+TLP+ N+ ++ L L +++ H + N+MT +LA+VF
Sbjct: 150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 200
Score = 127 bits (322), Expect = 1e-33
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
++E++ K + G + + + +H+ A +LK FLRE+PEPLLTF+ Y + ++ E
Sbjct: 91 QVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 149
Query: 578 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 215 bits (550), Expect = 3e-66
Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 11/196 (5%)
Query: 136 RVFGVPLSQLSSSDGK----VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
V+ S + S++ + I +E RGI +G+YR G++S++Q+L + +
Sbjct: 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILM 76
Query: 192 EGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVST 245
+ K + + + + LK +LR +P PL+ +++ F++AA L E RVS
Sbjct: 77 DPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSE 136
Query: 246 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL 305
+ S++ LP+ N ++ L+ HLA+VA + + N MT +L +VF P +LR + A+
Sbjct: 137 IHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-ETVAAI 195
Query: 306 SDISRQTLCIELIISE 321
DI Q + IE++I
Sbjct: 196 MDIKFQNIVIEILIEN 211
Score = 138 bits (351), Expect = 1e-37
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 388 SKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
S++Q+L + + + K + + + + LK +LR +P PL+ +++ F++AA
Sbjct: 66 SRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAA 125
Query: 444 DLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L +VF
Sbjct: 126 KLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFG 181
Score = 127 bits (321), Expect = 1e-33
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 518 SKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 573
S++Q+L + + + K + + + + LK +LR +P PL+ +++ F++AA
Sbjct: 66 SRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAA 125
Query: 574 DLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L
Sbjct: 126 KLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 176
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 215 bits (550), Expect = 9e-66
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 23/228 (10%)
Query: 103 CQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDG----KVPSLVDR 158
+ R C R+ + E G ++FGVP + L S +PS +
Sbjct: 41 VKGVRGQCDRRRHETAATEIG-----------GKIFGVPFNALPHSAVPEYGHIPSFLVD 89
Query: 159 LITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLRE 218
T++E I+TEG++RKSG +++ LK K+D G+ L +A LLK F RE
Sbjct: 90 ACTSLE-DHIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRE 145
Query: 219 MPEPLLTFEYYEEFLRAADL-TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA 277
+PEP+L + +E L+A L TE++ + L ++ L V+
Sbjct: 146 LPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSE 205
Query: 278 NRMTPNSLAIVFAPCILRQRHFP---AQDALSDISRQTLCIELIISEQ 322
N+M ++LA++FAP +L+ + + + Q ++ +I
Sbjct: 206 NKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYA 253
Score = 135 bits (341), Expect = 6e-36
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-T 446
+++ LK K+D G+ L +A LLK F RE+PEP+L + +E L+A L T
Sbjct: 111 IRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT 167
Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E++ + L ++ L V+ N+M ++LA++FA
Sbjct: 168 EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFA 218
Score = 123 bits (311), Expect = 7e-32
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-T 576
+++ LK K+D G+ L +A LLK F RE+PEP+L + +E L+A L T
Sbjct: 111 IRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT 167
Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E++ + L ++ L V+ N+M ++L
Sbjct: 168 EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 207 bits (529), Expect = 1e-63
Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 142 LSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELEL 200
L+ S +PS+V + IE RG+ G+YR SG ++ELK K K L
Sbjct: 6 LADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS 65
Query: 201 EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNF 258
+V +H + +LLK FLR + EPLLTF F+ AA++T ++ ++ ++ + LP+ N
Sbjct: 66 KVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANR 125
Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ--DALSDISRQTLCIE 316
D + L+ HL RVA +M +LA VF P I+ L DI RQ +E
Sbjct: 126 DTLAFLMIHLQRVAQSPH-TKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVE 184
Query: 317 LIISEQLK 324
++S L+
Sbjct: 185 RLLSLPLE 192
Score = 138 bits (351), Expect = 4e-38
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
++ELK K K L +V +H + +LLK FLR + EPLLTF F+ AA++T
Sbjct: 46 RTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITD 105
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++ ++ ++ + LP+ N D + L+ HL RVA +M +LA VF
Sbjct: 106 EDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANLAKVFG 156
Score = 127 bits (321), Expect = 5e-34
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
++ELK K K L +V +H + +LLK FLR + EPLLTF F+ AA++T
Sbjct: 46 RTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITD 105
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++ ++ ++ + LP+ N D + L+ HL RVA +M +L
Sbjct: 106 EDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANL 151
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 206 bits (527), Expect = 4e-63
Identities = 42/203 (20%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 135 HRVFGVPLSQLS---SSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
+ L L+ + P L+ +L+ IE +G+ +YR S + EL+ +D
Sbjct: 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLD 63
Query: 192 EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED---RVSTLFS 248
P ++LE+ VH+LA+ K +L ++P P++ Y E + A + + L
Sbjct: 64 CDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKK 122
Query: 249 ILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
++++ +P + ++ L+ H +++ N + L+ +F+P + R + +
Sbjct: 123 LIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR----FSAASSD 178
Query: 307 DISRQTLCIELIISEQLKKLADA 329
+ IE++IS + + A
Sbjct: 179 NTENLIKVIEILISTEWNERQPA 201
Score = 134 bits (340), Expect = 2e-36
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A +
Sbjct: 53 SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 111
Query: 448 D---RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ L ++++ +P + ++ L+ H +++ N + L+ +F+
Sbjct: 112 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFS 166
Score = 123 bits (310), Expect = 2e-32
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A +
Sbjct: 53 SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 111
Query: 578 D---RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ L ++++ +P + ++ L+ H +++ N + L
Sbjct: 112 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 161
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 206 bits (526), Expect = 9e-63
Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 11/214 (5%)
Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
VFGVPL+ G +P + + + + + G++RKSG+ S+IQ L+ +
Sbjct: 19 SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAI 78
Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKT 252
+ E S + +A++LK + R++PEPL+T + E FL+ + R+ + + +
Sbjct: 79 DC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIML 137
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
LP N ++++ L++ L+ V + N+MTP +LA+ AP + +++ + ++
Sbjct: 138 LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRK 197
Query: 313 LCIELIISEQLKKLADALSDISRQTLCIELIISE 346
+ + L++ T + +I+E
Sbjct: 198 QSLGKPDQKD-------LNENLAATQGLAHMIAE 224
Score = 138 bits (349), Expect = 2e-37
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
S+IQ L+ + + E S + +A++LK + R++PEPL+T + E FL+
Sbjct: 65 SRIQALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVP 123
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ R+ + + + LP N ++++ L++ L+ V + N+MTP +LA+ A
Sbjct: 124 KDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 175
Score = 126 bits (318), Expect = 3e-33
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
S+IQ L+ + + E S + +A++LK + R++PEPL+T + E FL+
Sbjct: 65 SRIQALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVP 123
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ R+ + + + LP N ++++ L++ L+ V + N+MTP +L
Sbjct: 124 KDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 176 bits (447), Expect = 2e-51
Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 17/203 (8%)
Query: 138 FGVPLSQLS---SSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
G+ L L S P L+ +L+ IE G+ +E YR +
Sbjct: 23 MGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTD---------- 72
Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLP 254
+++ + LA+ +K FL +P PL+T E E RA TLP
Sbjct: 73 WSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLP 131
Query: 255 KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR---HFPAQDALSDISRQ 311
+ L+ HL RVA A +L F P +LR P D S
Sbjct: 132 LHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEP 191
Query: 312 TLCIELIISEQLKKLADALSDIS 334
+ ++ E+L + +++
Sbjct: 192 SPDFPALLVEKLLQEHLEEQEVA 214
Score = 116 bits (293), Expect = 4e-30
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 406 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 465
+++ + LA+ +K FL +P PL+T E E RA TLP
Sbjct: 77 DVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLPLHRA 135
Query: 466 DLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ L+ HL RVA A +L F
Sbjct: 136 LTLRFLLQHLGRVARRAPALGPAVRALGATFG 167
Score = 107 bits (269), Expect = 9e-27
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 536 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 595
+++ + LA+ +K FL +P PL+T E E RA TLP
Sbjct: 77 DVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLPLHRA 135
Query: 596 DLMERLIFHLARVAYHEEANRMTPNSL 622
+ L+ HL RVA A +L
Sbjct: 136 LTLRFLLQHLGRVARRAPALGPAVRAL 162
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 177 bits (450), Expect = 3e-50
Identities = 52/269 (19%), Positives = 103/269 (38%), Gaps = 16/269 (5%)
Query: 61 SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
S + + + + H K + + S F +E + C+ R I
Sbjct: 113 SGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEAL--CRMKRPIREVPVTKLIDL 170
Query: 121 ECGLARSSAARSHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGI 179
E S + VPL + +S +VP + L+ + + E +++ G+
Sbjct: 171 EE----DSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGM 226
Query: 180 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 239
++Q++ +D + S H +A L +FL +PEP++ +E Y+ L +A
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281
Query: 240 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF 299
++ LP+ + ++ L+ L + E N + N +A +F +LR
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPP-- 337
Query: 300 PAQDALSDISRQTLCIELIISEQLKKLAD 328
P A S + I+ ++ L D
Sbjct: 338 PNLMARQTPSDRQRAIQFLLGFLLGSEED 366
Score = 112 bits (281), Expect = 4e-27
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
++Q++ +D + S H +A L +FL +PEP++ +E Y+ L +A
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281
Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
++ LP+ + ++ L+ L + E N + N +A +F
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFT 330
Score = 101 bits (253), Expect = 2e-23
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 517 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
++Q++ +D + S H +A L +FL +PEP++ +E Y+ L +A
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281
Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
++ LP+ + ++ L+ L + E N + N +
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMI 325
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 87.2 bits (215), Expect = 7e-18
Identities = 85/541 (15%), Positives = 162/541 (29%), Gaps = 131/541 (24%)
Query: 156 VDRLITTIELRGIYTEGIYR--KSGIHSKIQELKTKI-DEGKLPELELEVYS--VHILAN 210
RL T+ + E + + + + + L + I E + P + +Y L N
Sbjct: 64 TLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 211 LLKLFL-----REMPEPLLTFEYYEEFLRAADLTEDRVS---TLF-------SIL----- 250
++F R +P L LR A L E R + + + +
Sbjct: 122 DNQVFAKYNVSR--LQPYLK-------LRQA-LLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 251 ---KTLPKPNFDLMERLIF--HLARVAYHEE--------ANRMTPNSLAIVFAPCILRQR 297
K K +F IF +L E ++ PN + ++ R
Sbjct: 172 LSYKVQCKMDFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 298 HFPAQDALSD-ISRQTLCIELIISEQL-----KKLADALSDISRQTLCIELIISEQLKKL 351
Q L + + L++ L K +A ++S + L
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAF-NLSCKIL------------- 269
Query: 352 AVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSK-IQELKTKIDEGKLPELELEVY 410
+T + D SA T K + LP EV
Sbjct: 270 -LTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVL 323
Query: 411 SVHILA-NLLKLFLREMPEPLLTFEYY------------EEFLRAADLTEDRVSTLFSIL 457
+ + +++ +R+ T++ + E L + E R +F L
Sbjct: 324 TTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRL 378
Query: 458 KTLPK----PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI-----DEGK 508
P P L+ + F + + N++ SL +E I +
Sbjct: 379 SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 509 LPESELAIHSKIQE---LKTKIDEGKLPELELEVYSV-----HILANLLKLFLREMPEPL 560
E+E A+H I + + D L L+ Y H+ +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 561 LTFEYYEEFLRAADLTEDRVSTLFSILKTLPK---------PNFDLMERLIFH-LARVAY 610
L F + E+ +R + ++ + L+ L P ++ + I L ++
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 611 H 611
+
Sbjct: 558 N 558
Score = 78.4 bits (192), Expect = 4e-15
Identities = 66/435 (15%), Positives = 135/435 (31%), Gaps = 106/435 (24%)
Query: 119 MGECG---LARSSAARSH------GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIY 169
+ G +A S+ ++F + L +S + V ++ +L+ I+ +
Sbjct: 158 VLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPN--W 213
Query: 170 TEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY--SVHIL-----ANLLKLF------L 216
T S I +I ++ ++ L+ + Y + +L A F L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 217 -----REMPEPLLTFEYYEEFL--RAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
+++ + L L + LT D V +L K L DL
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDL--------- 318
Query: 270 RVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ---------DALSDISRQTLCIELIIS 320
E P L+I+ R A D L+ I + ++
Sbjct: 319 ----PREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEP 368
Query: 321 EQLKKLADALS------DISRQTLCI----------ELIISEQLKKLAVTLKDIDDLDTA 364
+ +K+ D LS I L + +++++ K V K + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTIS 427
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQE---LKTKIDEGKLPELELEVYSV-----HILA 416
S ++ K + +H I + + D L L+ Y H+
Sbjct: 428 IPSIYLELKV----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 417 NLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPK---------PNFDL 467
+ L F + E+ +R + ++ + L+ L P ++
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 468 MERLIFH-LARVAYH 481
+ I L ++ +
Sbjct: 544 LVNAILDFLPKIEEN 558
Score = 77.2 bits (189), Expect = 1e-14
Identities = 85/498 (17%), Positives = 165/498 (33%), Gaps = 129/498 (25%)
Query: 207 ILANLLKLFLR--------EMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPK--- 255
IL+ F+ +MP+ +L+ E + + + D LF L + +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMV 79
Query: 256 ---------PNFD-LMERLIFH-----LARVAYHEEANRMTPNSLAIVFAPC-ILRQRHF 299
N+ LM + + Y E+ +R+ ++ VFA + R + +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPY 137
Query: 300 PA-QDALSDISR--------------QTLCIELIISEQLKKLADA----LSDISRQTLCI 340
+ AL ++ + +++ +S +++ D L+ +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSP 195
Query: 341 ELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEG 400
E ++ E L+KL + D + + HS+N ++R IHS EL+ +
Sbjct: 196 ETVL-EMLQKLLYQI-DPNWTSRSDHSSNIKLR------------IHSIQAELRRLLKSK 241
Query: 401 KLPE--LEL-EVYSVHILANLLKLF------L-----REMPEPLLTFEYYEEFL--RAAD 444
L L V + A F L +++ + L L +
Sbjct: 242 PYENCLLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 445 LTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA--QELKT 502
LT D V +L K L DL E P L+I+ ++
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQDL-------------PREVLTTNPRRLSIIAESIRDGLA 342
Query: 503 KIDEGKLPESELAIHSKIQELKTKIDEG--KLPELEL-EVY--------SVHILANLLKL 551
D K H +L T I+ L E +++ S HI LL L
Sbjct: 343 TWDNWK--------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 552 FLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSI----LKTLPKPN--FDLMERLIFHL 605
++ + + + + + + + SI L+ K + L ++ H
Sbjct: 395 IWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 606 ARVAYHEEANRMTPNSLD 623
+ +++ + P LD
Sbjct: 454 -NIPKTFDSDDLIPPYLD 470
Score = 31.4 bits (70), Expect = 1.2
Identities = 38/290 (13%), Positives = 79/290 (27%), Gaps = 73/290 (25%)
Query: 136 RVFGVPLSQLSSSDGKVPSLVDRLITTIELR-GIYTEGIYRKSGIHSKIQELKTKIDEGK 194
+ L +I +R G+ T ++ +++ ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNV-- 365
Query: 195 LPELEL-EVY--------SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVST 245
L E +++ S HI LL L ++ + + + + + + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKYSLVEKQPKES 424
Query: 246 LFSI----LKTLPKPN--FDLMERLI----------------------------FHLARV 271
SI L+ K + L ++ HL +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 272 AYHEEANRMTPNSLAIVFAPCILRQ--RH--------FPAQDALSDIS--RQTLC-IELI 318
+ E L F L Q RH + L + + +C +
Sbjct: 485 EHPERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 319 ISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDD---LDTAR 365
+ + D L I LI S+ L + L D+ + +
Sbjct: 541 YERLVNAILDFLPKIEEN-----LICSKYTDLLRIALMAEDEAIFEEAHK 585
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 59.4 bits (143), Expect = 2e-11
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 49 KRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERM---LVCQN 105
+ KE + + ++ + I + GHE + + PT CE C W + + L C+
Sbjct: 1 ESKKEPEFPVEPVGEKSNYICHKGHEFIPTLYHFPTNCEACMKPL-WHMFKPPPALECRR 59
Query: 106 CRHTCHRKCYTRIMGEC 122
C CH+ +
Sbjct: 60 CHIKCHKDHMDKKEEII 76
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 57.1 bits (138), Expect = 1e-10
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 60 ASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
+S KQ HE + PT C +C ++ C+ C H+KC +I+
Sbjct: 5 SSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKII 64
Query: 120 GECGLARSSAARSHGH 135
G C +++ + G
Sbjct: 65 GRCTGTAANSRDTSGP 80
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 55.9 bits (135), Expect = 2e-10
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 58 KKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
++ + KQ HE + PT C +C+ ++ C+ C H+KC +
Sbjct: 9 RRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68
Query: 118 IMGEC 122
++ +C
Sbjct: 69 VIAKC 73
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 53.7 bits (129), Expect = 1e-09
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 72 GHELESK-IINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
GH + P C++C + L C NC+ TCH +C + I +C
Sbjct: 10 GHRFVELALRGGPGWCDLCGREV-L--RQALRCANCKFTCHSECRSLIQLDC 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 74/474 (15%), Positives = 130/474 (27%), Gaps = 169/474 (35%)
Query: 70 YLGH---ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHT----CHRKCYTRIMGEC 122
+LG+ +E + ++ N E + N H ++ T ++
Sbjct: 64 FLGYVSSLVEPS--KVGQFDQVLNLCLT-EFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 123 GLARS-SAARSHGHRVFGVPL-SQL--SSSDGKVPSLVDRLITTI------------ELR 166
L ++ AR R F S L + +G + I ELR
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ------LVAIFGGQGNTDDYFEELR 174
Query: 167 GIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTF 226
+Y Y + +L + A L +R + F
Sbjct: 175 DLYQ--TYH-----VLVGDL------------------IKFSAETLSELIRTTLDAEKVF 209
Query: 227 EYY---EEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM--T 281
E+L T D L SI + P LI + Y A + T
Sbjct: 210 TQGLNILEWLENPSNTPD-KDYLLSIPISCP---------LIGVIQLAHYVVTAKLLGFT 259
Query: 282 PNSL------------AIVFAPCI------------------------LR-QRHFPAQDA 304
P L +V A I +R +P
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 305 LSDISRQT-----------LCIELIISEQLKKLADALSDI--SRQTLCIELIIS------ 345
I + L I + EQ++ + + + + + I L+
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 346 ----EQLKKLAVTLKDI---DDLDTAR--HSANTRIRQIRSSK---P--KPFPQIHSKI- 390
+ L L +TL+ LD +R S R+++ S P PF HS +
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE----RKLKFSNRFLPVASPF---HSHLL 432
Query: 391 --------QELKTKIDEGKLPELELEVYSVH-----------ILANLLKLFLRE 425
++L ++++ VY I ++ +R
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 59.7 bits (144), Expect = 2e-09
Identities = 87/550 (15%), Positives = 163/550 (29%), Gaps = 173/550 (31%)
Query: 190 IDEGKLPELELEV-YSVHILANLLK-LFLREMPEPLLTF----------EYYEEFLR--A 235
+ G L E L V + +A+ L+ F + +PEP F E +FL +
Sbjct: 11 LSHGSL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 236 ADLTEDRVSTLFSILKTLPKPNFDLMERLIF-----HLARVAYHEEANRMTPNSLAIV-- 288
+ + +V +L E H +E + + ++
Sbjct: 70 SLVEPSKVGQFDQVLNLC----LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 289 -FAPCILRQRHF--PAQDAL-SDISRQTLCIELI------ISEQLKKLADALSDISRQTL 338
I+ +R F + AL + + I + ++L D L L
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYH-VL 183
Query: 339 CIELI--ISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTK 396
+LI +E L +L + K F Q + ++ L+
Sbjct: 184 VGDLIKFSAETLSELI---------------------RTTLDAEKVFTQGLNILEWLE-- 220
Query: 397 IDEGKLPELELEVYSVHILANLLKLFLREMPEPLLT---FEYYEEFLRAADLT----EDR 449
+ P+ + Y + I + PL+ +Y + T
Sbjct: 221 -NPSNTPDKD---YLLSIPISC----------PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 450 VSTLFSILKTLP----------KPNF----DLMERLIFHL-ARVAYHEEANRMTPNSLAI 494
+ + L +F ++F + R +E + +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC--YEAYPNTSLPPSIL 324
Query: 495 VFAQELKTKIDEGKLPESELAIHS-KIQELKTKIDE--GKLPELELEVYSVHI-LAN--- 547
+ E +EG +P L+I + ++++ +++ LP + V I L N
Sbjct: 325 EDSLE----NNEG-VPSPMLSISNLTQEQVQDYVNKTNSHLPAGK----QVEISLVNGAK 375
Query: 548 ----------L--LKLFLREMPEPL-------------LTFEYYEEFLR----------- 571
L L L LR+ P L F FL
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLPVASPFHSHLLV 433
Query: 572 -AAD-LTEDRVSTLFSIL-KTLPKPNFD-------------LMERLIFHLARVAYH-EEA 614
A+D + +D V S K + P +D + ER++ + R+ E
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 615 NRMTPNS-LD 623
+ LD
Sbjct: 494 TQFKATHILD 503
Score = 38.9 bits (90), Expect = 0.006
Identities = 61/355 (17%), Positives = 102/355 (28%), Gaps = 147/355 (41%)
Query: 227 EYYEEFLRAADLTE--DR--VSTL-FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 281
+ Y+ A D+ D T FSIL + N
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILD-IVINN------------------------ 1668
Query: 282 PNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA-DALSDISRQTLCI 340
P +L I HF + ++ I E + + + D +T I
Sbjct: 1669 PVNLTI----------HFGGEK-----GKR-------IRENYSAMIFETIVDGKLKTEKI 1706
Query: 341 ELIISEQLKKLAVTLK-DIDDLD-TARHSANTRIRQIRSSKPKPFPQI--HSK--IQELK 394
I+E T + + L T T Q P + K ++LK
Sbjct: 1707 FKEINEHSTSY--TFRSEKGLLSATQ----FT---Q---------PALTLMEKAAFEDLK 1748
Query: 395 TKIDEGKLPE--------L-ELEVYS--VHI-----LANLLKL-FLR------EMPEPLL 431
+G +P L E Y+ + + +L+++ F R +P
Sbjct: 1749 ---SKGLIPADATFAGHSLGE---YAALASLADVMSIESLVEVVFYRGMTMQVAVPR--- 1799
Query: 432 TFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYH-----EEANR 486
E + RV+ FS E L + + RV E N
Sbjct: 1800 -DELGRSNYGMIAINPGRVAASFS------------QEALQYVVERVGKRTGWLVEIVNY 1846
Query: 487 MTPNSLAIVFAQELK--------------TKIDEGKLPESELAIHSKIQELKTKI 527
N V A +L+ KID +L +S ++E++ +
Sbjct: 1847 NVENQQ-YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS-----LSLEEVEGHL 1895
Score = 35.4 bits (81), Expect = 0.063
Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 71/252 (28%)
Query: 76 ESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGH 135
ES +++ A + LF + R C+ Y + S + G
Sbjct: 290 ESFFVSVRKAITV---LF-F--------IGVR--CYE-AYPNTSLPPSILEDSLENNEGV 334
Query: 136 -----RVFGVPLSQLSS----SDGKVP-------SLV---DRLITT---IELRGIYTEGI 173
+ + Q+ ++ +P SLV L+ + L G+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-- 392
Query: 174 YRKSGIHSKIQELKTKIDEGKLPELE---LEVYSV----HILANLLKLFLREMPEPLLTF 226
RK+ S + + + E K + L V + H+L L +++ + ++F
Sbjct: 393 LRKAKAPSGLDQSRIPFSERK-LKFSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 227 EYYEEFLRAADL------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYH-EEANR 279
A D+ T D L + + ER++ + R+ E +
Sbjct: 451 -------NAKDIQIPVYDTFDG--------SDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 280 MTPNSLAIVFAP 291
+ + F P
Sbjct: 496 FKA-THILDFGP 506
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 53.0 bits (127), Expect = 3e-09
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 72 GHELESK-IINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
GH + P C++C + + L C NC+ TCH +C + I +C
Sbjct: 23 GHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDC 71
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 52.5 bits (126), Expect = 3e-09
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGECGL 124
H E PT C C L W I R + C C CH KC + +C L
Sbjct: 13 QHNFEVWTATTPTYCYECEGLL-WGIARQGMRCTECGVKCHEKCQDLLNADCKL 65
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 49.8 bits (119), Expect = 3e-08
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
H + PT CE C +L + L C C H +C T++ CG+
Sbjct: 12 PHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 49.0 bits (117), Expect = 3e-08
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
H K C+IC CQ C + H C T++ C
Sbjct: 3 THNFARKTFLKLAFCDICQKFL-L---NGFRCQTCGYKFHEHCSTKVPTMC 49
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 85
Score = 49.9 bits (119), Expect = 4e-08
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
H+ + PT C+ C SL I + + C C H++C + CG+ +
Sbjct: 17 KHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRG 76
Query: 132 SHGHRV 137
+
Sbjct: 77 RIYLKA 82
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 46.7 bits (111), Expect = 2e-07
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
H + PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 47.6 bits (113), Expect = 2e-07
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
H+ + P C++C + + L C+NC+ H C + + +
Sbjct: 17 PHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQR 67
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 51.9 bits (124), Expect = 5e-07
Identities = 16/96 (16%), Positives = 32/96 (33%)
Query: 36 GSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKW 95
G + + +K + +Q++ H+ ++ PT C C
Sbjct: 1 GMADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWG 60
Query: 96 PIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
++ CQ C H++C+ + C A A
Sbjct: 61 FGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPAS 96
Score = 36.9 bits (85), Expect = 0.023
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 58 KKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
K + R H+ + + PT C+ C SL I + + C C H++C
Sbjct: 91 DKGPASDDPRS---KHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN 147
Query: 118 IMGECGLARSSAARSHGHRVF 138
+ CG + +
Sbjct: 148 VPSLCGTDHTERRGRIYIQAH 168
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 41.8 bits (98), Expect = 2e-05
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYT 116
C IC + M++C C H+ C+T
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 40.4 bits (94), Expect = 1e-04
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 76 ESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
+ + + AC +C + +++ CQ C + H+ C+
Sbjct: 9 DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCH 48
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 71 LGHELESKIINIP---TACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
+GH + ++ C IC +L C C H++CY
Sbjct: 1 MGHHHHHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECY 48
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 37.6 bits (87), Expect = 4e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 77 SKIINIPTACEICN-SLFKWPIERMLVCQNCRHTCHRKC 114
S + C +C S+ + C++CR CH KC
Sbjct: 8 STKSWLSQVCNVCQKSMIFG-----VKCKHCRLKCHNKC 41
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 38.1 bits (88), Expect = 7e-04
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 48 AKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCR 107
A+ + +K S +I+ C IC +L C C
Sbjct: 1 ARTKQTARKSTGGSSGSSQ-----------SLIDEDAVCSICMDGESQNSNVILFCDMCN 49
Query: 108 HTCHRKCY 115
H++CY
Sbjct: 50 LAVHQECY 57
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 39.0 bits (91), Expect = 0.003
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 49 KRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRH 108
+ + A+ H+ + T+C+ C L + + C CR
Sbjct: 331 EMAISNIYPENATANG--------HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRA 382
Query: 109 TCHRKCYTRIMGECGLARSS 128
H++C R+ CG
Sbjct: 383 PAHKECLGRV-PPCGRHGQD 401
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 36.5 bits (84), Expect = 0.004
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C +C+S C C H C
Sbjct: 10 CAVCDSPGDL--LDQFFCTTCGQHYHGMC 36
Score = 30.7 bits (69), Expect = 0.44
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C+ C + +MLVC C H C
Sbjct: 54 CKVCQNCKQSGED--SKMLVCDTCDKGYHTFC 83
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 35.0 bits (80), Expect = 0.008
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 81 NIPTA--CEICNSLFKWPIERMLV---CQNCRHTCHRKCYTRIMGEC 122
N+P + C +C+ L C C+ H C ++ +C
Sbjct: 34 NLPVSAKCTVCDKTCG--SVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 35.7 bits (81), Expect = 0.012
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 55 KKDKKASRKQEDRIVYLGHELESKIINIPTA----CEICNSLFKWPIERMLVCQNCRHTC 110
+ +K +++RI L LE+ N+ C +C +VC++C+
Sbjct: 23 ARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV 82
Query: 111 HRKCYTRI 118
KC
Sbjct: 83 CTKCGVET 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.012
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 498 QELKTKIDEGKL----PESE--LAIHSKIQ 521
Q LK K+ + L +S LAI + ++
Sbjct: 20 QALK-KL-QASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 346 EQLKKLAVTLKDIDDLDTA 364
+ LKKL +LK D D+A
Sbjct: 20 QALKKLQASLKLYAD-DSA 37
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 33.7 bits (77), Expect = 0.015
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C IC+SL C+ C H C
Sbjct: 18 CNICHSLLIQGQ----SCETCGIRMHLPC 42
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 34.4 bits (78), Expect = 0.016
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFG 139
C++C W E + C+ C H C R MG ++ H G
Sbjct: 18 CDVCEV---WTAESLFPCRVCTRVFHDGCLRR-MGYIQGDSAAEVTEMAHTETG 67
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 36.9 bits (85), Expect = 0.017
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
T+C+ C L + + C CR + H++C R+ CG
Sbjct: 529 TTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCG 568
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 32.3 bits (73), Expect = 0.11
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 86 CEICNSLF----KWPIERMLVCQNCRHTCHRKC 114
C C + E ++ C +C ++ H C
Sbjct: 8 CSFCLGTKEQNREKKPEELISCADCGNSGHPSC 40
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 32.8 bits (74), Expect = 0.14
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 42 KPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEIC---NSLFKWPIE 98
+ + K T + K+ + L +E+ K NI C C N + P+
Sbjct: 2 RTKQTARKSTGGKAPRKQLRER-------LVYEVRQKCRNIEDICISCGSLNVTLEHPLF 54
Query: 99 RMLVCQNCRHTCHRKCYTR 117
+CQNC++ Y
Sbjct: 55 VGGMCQNCKNCFLECAYQY 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 31.8 bits (72), Expect = 0.15
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
C++C + P+E+M C+ C +
Sbjct: 8 CKLCLGEY--PVEQMTTIAQCQCIFCTLCLKQ 37
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 30.2 bits (68), Expect = 0.26
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
AC +C ++ L+C C H C
Sbjct: 19 CACHLCGGRQDP--DKQLMCDECDMAFHIYC 47
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 31.9 bits (71), Expect = 0.27
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 52 KERKKDKKASRKQEDRIVYLGHELESKIIN---IPTACEICNSLFKWPIERMLVCQNCRH 108
R+++++ + + +I + E T C C ++ + C C
Sbjct: 34 DLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSL 93
Query: 109 TCHRKC 114
+ C
Sbjct: 94 FVCKSC 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 30.7 bits (69), Expect = 0.29
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C++C+ + +++L C C H C
Sbjct: 17 YICQVCSRGDED--DKLLFCDGCDDNYHIFC 45
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
4ado_A
Length = 222
Score = 32.3 bits (73), Expect = 0.34
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 31/129 (24%)
Query: 344 ISEQLKKLA---VTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEG 400
I + +L T+ D + + + I +I F I I+E +
Sbjct: 22 IRSVILRLKNVYKTVNDKETVKVIQSETYNDINEI-------FGHIDDDIEESLKVLMNI 74
Query: 401 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTL 460
+L E+E ++ + ++ +F +K +
Sbjct: 75 RLSNKEIEAILNK-----FLEYVVPFEL----------------PSPQKLQKVFKKVKKI 113
Query: 461 PKPNFDLME 469
P F+ +
Sbjct: 114 KIPQFEEYD 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 30.2 bits (68), Expect = 0.36
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
AC +C ++ L+C C H C
Sbjct: 27 CACHLCGGRQDP--DKQLMCDECDMAFHIYC 55
>2yb5_A FUSC, putative fusidic acid resistance protein; translation,
antibiotic resistance, zinc finger; 2.10A
{Staphylococcus aureus}
Length = 215
Score = 31.9 bits (72), Expect = 0.43
Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 30/128 (23%)
Query: 344 ISEQLKKLAVTLK--DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGK 401
+ + + +L + D++ T + I I F + I + T ID+ K
Sbjct: 15 VKQLVYQLIKLYRTNDMNSHKTQKDFLLNEINDI-------FKEKDIDISDFITSIDDVK 67
Query: 402 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLP 461
L + + E LK+++++ + ++ +F +K L
Sbjct: 68 LTKKKAEHLLNE-----LKVYIQDFEI----------------PSSSQLEKIFRKVKKLK 106
Query: 462 KPNFDLME 469
+P+ +L++
Sbjct: 107 RPDINLID 114
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 29.2 bits (66), Expect = 0.44
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C++C K +++++C C H C
Sbjct: 3 CKVCRK--KGEDDKLILCDECNKAFHLFC 29
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 30.4 bits (68), Expect = 0.57
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 86 CEICNS-----LFKWPIERMLVCQNCRHTCHRKC 114
C+ C E ++ C +C + H C
Sbjct: 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTC 37
Score = 28.9 bits (64), Expect = 2.1
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
+C +C + +++L C +C H C
Sbjct: 58 CKSCILCGTSEND--DQLLFCDDCDRGYHMYC 87
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 31.4 bits (72), Expect = 0.62
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 486 RMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI 520
++T + + + + K +EGKLP+SE H
Sbjct: 49 KLTESHIVFI---DGNGKHEEGKLPQSEWRFHMAA 80
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 31.9 bits (71), Expect = 0.64
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 37 SIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSL---F 93
+++ E S + +S + +E+++ NI C C SL
Sbjct: 6 ALDPEAEPS--MDVILVGSSELSSSVSPGTGRDLIAYEVKANQRNIEDICICCGSLQVHT 63
Query: 94 KWPIERMLVCQNCRHTCHRKCYTR 117
+ P+ +C C+ +
Sbjct: 64 QHPLFEGGICAPCKDKFLDALFLY 87
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 31.2 bits (70), Expect = 0.71
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
I+ + + + C IC+SL + + C+ C H C +
Sbjct: 165 ILEMEQYIRETYPDAVKICNICHSL----LIQGQSCETCGIRMHLPCVAK 210
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.71
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 39 EAEKPRSGKAKRTKE-RKKDKKASRKQEDRIVYLGHELE 76
E E R + ++ K ++ D + +++ +LE
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.0 bits (65), Expect = 0.89
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 81 NIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
IP C IC F+ P V CRH C
Sbjct: 13 EIPFRCFICRQAFQNP-----VVTKCRHYFCESCALE 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 29.8 bits (67), Expect = 0.94
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
C +C F C H+ + C R
Sbjct: 18 CVLCGGYFIDA----TTIIECLHSFCKTCIVR 45
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 1.1
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 60 ASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERM----LVCQNC 106
+R+ D+ +NI C C +ER +VC C
Sbjct: 2 MTRESIDK----RAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC 48
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.4 bits (68), Expect = 1.1
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C IC + V C H + C + +
Sbjct: 21 CPICLMALREA-----VQTPCGHRFCKACIIKSI 49
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 28.6 bits (64), Expect = 1.3
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C +C + L+C C H C
Sbjct: 29 CRVCGGKHEP--NMQLLCDECNVAYHIYC 55
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 87
Score = 28.3 bits (63), Expect = 1.7
Identities = 10/57 (17%), Positives = 26/57 (45%)
Query: 319 ISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQI 375
+ E L++++ + ++ L + I Q +++ ++ D T AN R ++
Sbjct: 27 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 30.1 bits (68), Expect = 2.1
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 501 KTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELE---------LEVYSVHILANLLKL 551
+ P E + +K + L ++ + V ++A LL L
Sbjct: 148 GRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLAL 207
Query: 552 FLREMP--EPLLTFE 564
L P LLT E
Sbjct: 208 LLGGAPAERSLLTGE 222
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D
3ipd_D 1urq_D 1xtg_B
Length = 66
Score = 27.4 bits (61), Expect = 2.5
Identities = 10/57 (17%), Positives = 26/57 (45%)
Query: 319 ISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQI 375
+ E L++++ + ++ L + I Q +++ ++ D T AN R ++
Sbjct: 8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 29.5 bits (65), Expect = 2.9
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 41 EKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIP----TACEICNSLFKWP 96
E ++ R R ++ + + + + + I P C IC
Sbjct: 91 EINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVG 150
Query: 97 IERMLVCQNCRHT------CHRKC 114
+ LV + T C
Sbjct: 151 VTANLVHDHNHDTGWGREWICDSC 174
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.9 bits (60), Expect = 2.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHT-CHRKCYTRIMGEC 122
C+ C + K P ++L C HT C C +C
Sbjct: 9 CQQCQAEAKCP--KLLPCL---HTLC-SGCLEASGMQC 40
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 29.2 bits (66), Expect = 3.1
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 501 KTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELE---------LEVYSVHILANLLKL 551
+ P E + +K + L ++ + V ++A LL L
Sbjct: 151 GRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLAL 210
Query: 552 FL 553
L
Sbjct: 211 LL 212
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 29.3 bits (65), Expect = 3.8
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
+EL ++ + C+IC K + C H C T
Sbjct: 322 YELYCEMGSTFQLCKICAENDKDV-----KIEPCGHLMCTSCLTSWQ 363
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 27.4 bits (60), Expect = 4.1
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
P C +C + C C + R C+ RI
Sbjct: 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRI 45
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 28.6 bits (63), Expect = 5.8
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKC 114
AC +C ++ L+C C H C
Sbjct: 175 CACHLCGGRQDP--DKQLMCDECDMAFHIYC 203
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 27.8 bits (61), Expect = 7.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
C C ++ + P + Q C H C I+
Sbjct: 34 CSACRNVLRRPFQ----AQ-CGHRYCSFCLASILSSGP 66
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 27.1 bits (60), Expect = 8.2
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
C IC + V C H + C + + + G
Sbjct: 21 CPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG 53
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic
mechanism; 2.40A {Aquifex aeolicus}
Length = 208
Score = 27.6 bits (62), Expect = 8.9
Identities = 7/42 (16%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 486 RMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKI 527
++TP + ++ + + + G P +E +H+ + +L ++
Sbjct: 56 KLTPEDILLI---DYEGRPVGGGKPSAETLLHTTVYKLFPEV 94
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 26.8 bits (59), Expect = 9.3
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
C IC + +C +C C C R
Sbjct: 25 CFICMEKLRDAR----LCPHCSKLCCFSCIRR 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,543,870
Number of extensions: 600504
Number of successful extensions: 1671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1530
Number of HSP's successfully gapped: 152
Length of query: 625
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 526
Effective length of database: 3,937,614
Effective search space: 2071184964
Effective search space used: 2071184964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)