RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10137
(625 letters)
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 155 bits (393), Expect = 1e-44
Identities = 54/192 (28%), Positives = 102/192 (53%), Gaps = 5/192 (2%)
Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
+V+ L+ L + + P +VD I IE RG+ +EG+YR SG I+++K D
Sbjct: 1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDG 60
Query: 195 LPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSIL 250
++I+ LKL+ R++P P++T++ Y +F+ AA ++ ++R+ + +L
Sbjct: 61 EKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVL 120
Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
LP +++ + L+ HL +V +E+ N M +L IVF P ++R L D+
Sbjct: 121 MLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRY 180
Query: 311 QTLCIELIISEQ 322
Q L ++++I +
Sbjct: 181 QKLIVQILIENE 192
Score = 84.8 bits (209), Expect = 1e-19
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 387 HSKIQELKTKIDEGKLPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 444
I+++K D ++I+ LKL+ R++P P++T++ Y +F+ AA
Sbjct: 46 TEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105
Query: 445 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
++ ++R+ + +L LP +++ + L+ HL +V +E+ N M +L IVF L
Sbjct: 106 ISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 163
Score = 77.9 bits (191), Expect = 4e-17
Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 517 HSKIQELKTKIDEGKLPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
I+++K D ++I+ LKL+ R++P P++T++ Y +F+ AA
Sbjct: 46 TEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105
Query: 575 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLD 623
++ ++R+ + +L LP +++ + L+ HL +V +E+ N M +L
Sbjct: 106 ISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG 156
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 152 bits (385), Expect = 1e-43
Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 136 RVFGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
+ FGV L L + + +P ++ + ++ + TEGI+R+S ++E++ K +
Sbjct: 5 QQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNM 64
Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILK 251
G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++ E RV +L+
Sbjct: 65 GLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 123
Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQ 311
TLP+ N+ ++ L L +++ H + N+MT +LA+VF P +L + A L I+
Sbjct: 124 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI 181
Query: 312 TLCIELIISEQ 322
+ ++ Q
Sbjct: 182 NTFTKFLLDHQ 192
Score = 89.8 bits (222), Expect = 3e-21
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
++E++ K + G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++
Sbjct: 52 TQVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID 110
Query: 447 ED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
E RV +L+TLP+ N+ ++ L L +++ H + N+MT +LA+VF
Sbjct: 111 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 162
Score = 81.0 bits (199), Expect = 3e-18
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 517 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
++E++ K + G + + + ++H+ A +LK FLRE+PEPLLTF+ Y + ++
Sbjct: 52 TQVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID 110
Query: 577 ED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
E RV +L+TLP+ N+ ++ L L +++ H + N+MT +L
Sbjct: 111 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 157
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 142 bits (360), Expect = 3e-40
Identities = 39/186 (20%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELE 201
L++ + P L+ +L+ IE +G+ +YR S + EL+ +D P ++LE
Sbjct: 4 LAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDCDT-PSVDLE 61
Query: 202 VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED---RVSTLFSILKTLP--KP 256
+ VH+LA+ K +L ++P P++ Y E + A + + L ++++
Sbjct: 62 MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQ 121
Query: 257 NFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIE 316
+ ++ L+ H +++ N + L+ +F+P + R + + + IE
Sbjct: 122 YWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR----FSAASSDNTENLIKVIE 177
Query: 317 LIISEQ 322
++IS +
Sbjct: 178 ILISTE 183
Score = 90.2 bits (223), Expect = 2e-21
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A +
Sbjct: 42 SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 100
Query: 448 D---RVSTLFSILKTLP--KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
+ L ++++ + ++ L+ H +++ N + L+ +F+
Sbjct: 101 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFS 155
Score = 80.9 bits (199), Expect = 2e-18
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
S + EL+ +D P ++LE+ VH+LA+ K +L ++P P++ Y E + A +
Sbjct: 42 SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 100
Query: 578 D---RVSTLFSILKTLP--KPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
+ L ++++ + ++ L+ H +++ N + L
Sbjct: 101 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 150
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 140 bits (353), Expect = 4e-39
Identities = 56/180 (31%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 149 DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL----ELEVYS 204
D S++ + I +E RGI +G+YR G++S++Q+L + + + K +
Sbjct: 4 DSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWE 63
Query: 205 VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLME 262
+ + + LK +LR +P PL+ +++ F++AA L E RVS + S++ LP+ N ++
Sbjct: 64 IKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLH 123
Query: 263 RLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
L+ HLA+VA + + N MT +L +VF P +LR + A+ DI Q + IE++I
Sbjct: 124 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-ETVAAIMDIKFQNIVIEILIENH 182
Score = 88.3 bits (218), Expect = 8e-21
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 387 HSKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 442
+S++Q+L + + + K + + + + LK +LR +P PL+ +++ F++A
Sbjct: 35 NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKA 94
Query: 443 ADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
A L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L +VF
Sbjct: 95 AKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFG 151
Score = 79.8 bits (196), Expect = 7e-18
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 517 HSKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 572
+S++Q+L + + + K + + + + LK +LR +P PL+ +++ F++A
Sbjct: 35 NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKA 94
Query: 573 ADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
A L E RVS + S++ LP+ N ++ L+ HLA+VA + + N MT +L
Sbjct: 95 AKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 146
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 54.3 bits (130), Expect = 2e-10
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
H + P CE C + I + + C +C H++C + +C
Sbjct: 4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQ 55
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 54.3 bits (130), Expect = 3e-10
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
H+ + PT C+ C SL + + + C C HR+C + CG+
Sbjct: 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGV 60
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 53.1 bits (127), Expect = 5e-10
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
H + PT C+ C SL +++ L C++C H KC ++ C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 51.5 bits (123), Expect = 2e-09
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
H K C+IC CQ C + H C T++ C
Sbjct: 3 THNFARKTFLKLAFCDICQKFLLN----GFRCQTCGYKFHEHCSTKVPTMC 49
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 46.6 bits (110), Expect = 2e-07
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 63 KQEDRIVYLGHELESKIINIPTACEICNS-LFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
+ D I + H+ + + C +C+ + C C+ H C ++ +
Sbjct: 19 EDADGIA-MPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTK 77
Query: 122 CGLARS 127
C S
Sbjct: 78 CSGPSS 83
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 40.6 bits (95), Expect = 1e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
H +K C +C + + C++CR CH KC
Sbjct: 5 HRFSTKSWLSQV-CNVCQKSMIF----GVKCKHCRLKCHNKCTKEA 45
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 36.0 bits (82), Expect = 0.002
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
AC +C + +++ CQ C + H+ C+
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCH 48
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 34.5 bits (79), Expect = 0.002
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSS 128
C+ C + K P C HT C +C + ++
Sbjct: 9 CQQCQAEAKCP-----KLLPCLHTLCSGCLEASGMQCPICQAP 46
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 35.1 bits (80), Expect = 0.007
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 55 KKDKKASRKQEDRIVYLGHELESKIINI----PTACEICNSLFKWPIERMLVCQNCRHTC 110
+ +K +++RI L LE+ N+ C +C +VC++C+
Sbjct: 16 ARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV 75
Query: 111 HRKCYTRIMG 120
KC
Sbjct: 76 CTKCGVETSN 85
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 31.6 bits (71), Expect = 0.021
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
C +C + C C + R C+ RI +
Sbjct: 3 CPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDEN 39
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 31.9 bits (72), Expect = 0.021
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
C C + E + C C H KC
Sbjct: 7 GQCGACGESYA-ADEFWICCDLCEMWFHGKCV 37
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 30.1 bits (67), Expect = 0.078
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
C I + + R ++ R + + + +
Sbjct: 3 CAISGKVPR----RPVLSPKSRTIFEKSLLEQYVKDT 35
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 30.4 bits (68), Expect = 0.13
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 74 ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
EL ++ + C+IC K + C H C T
Sbjct: 14 ELYCEMGSTFQLCKICAENDKDV-----KIEPCGHLMCTSCLTSWQ 54
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 29.5 bits (66), Expect = 0.15
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C +C + + E C H H +C
Sbjct: 8 CAVCLAELEDG-EEARFLPRCGHGFHAEC 35
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 30.1 bits (67), Expect = 0.18
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
C C ++ + + C H C + +G
Sbjct: 25 CSRCTNILRE----PVCLGGCEHIFCSNCVSDCIGTG 57
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.0 bits (64), Expect = 0.27
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C C + L+ C HT C +
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF 39
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 29.1 bits (65), Expect = 0.27
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
C IC + C H C TR +
Sbjct: 8 CPICLEDPSNYS----MALPCLHAFCYVCITRWI 37
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 28.9 bits (64), Expect = 0.36
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 76 ESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
S + +P C +C + M+ C C+ H C
Sbjct: 5 SSGMALVPVYC-LCRQPYNVN-HFMIECGLCQDWFHGSCV 42
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 28.3 bits (62), Expect = 0.37
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
C ICN R C HR C + +
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS 45
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 28.0 bits (62), Expect = 0.59
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 5/29 (17%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C +C +L C C + H C
Sbjct: 12 CRVCKD-----GGELLCCDTCPSSYHIHC 35
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 27.0 bits (60), Expect = 0.72
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 85 ACEICNSLFKWPIERMLVCQNCRH 108
C CNS + + +LVC C H
Sbjct: 5 PCPQCNSEYTYEDGALLVCPECAH 28
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.3 bits (63), Expect = 0.77
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKC 114
C+IC + P V +C+H R C
Sbjct: 26 CQICEHILADP-----VETSCKHLFCRIC 49
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 28.4 bits (63), Expect = 0.78
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGH 135
C++C W E + C+ C H C R MG ++ H
Sbjct: 18 CDVCEV---WTAESLFPCRVCTRVFHDGCLRR-MGYIQGDSAAEVTEMAH 63
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 27.7 bits (61), Expect = 1.0
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 76 ESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
E ++ + IC M+ C C H C
Sbjct: 8 ECEVYDPNALYCICRQPHNN--RFMICCDRCEEWFHGDCV 45
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.5 bits (58), Expect = 1.3
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 86 CEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
C++C K +++++C C H C
Sbjct: 3 CKVCRK--KGEDDKLILCDECNKAFHLFCL 30
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 28.3 bits (62), Expect = 1.9
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 8/118 (6%)
Query: 83 PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPL 142
+ E + P + + E L A G V
Sbjct: 40 RSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKP 99
Query: 143 SQLSSSDGKVPSLVDRLITTIELRG--IYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
GK +++ E +Y +R++ + ++ + EGK +L
Sbjct: 100 ISTDVETGK------KVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPNDL 151
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 28.0 bits (62), Expect = 2.3
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 61 SRKQEDRIVYLGHELESKIINIPTA--CEICNSLFKWPIERMLVCQ-----------NCR 107
SR +RIV + ++ + ++ A + + K PI + +
Sbjct: 21 SRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTM 80
Query: 108 HTCHRKCYTRIMGECGLARS--SAARSHGHR 136
T +G+ S AA + G R
Sbjct: 81 QYILNPICTWCVGQAASMGSLLLAAGTPGMR 111
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 26.2 bits (57), Expect = 2.9
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 84 TACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
C C F + R C+NC +C +
Sbjct: 14 RVCHRCRVEFTF-TNRKHHCRNCGQVFCGQCTAK 46
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 27.8 bits (61), Expect = 3.5
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 52 KERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKW------PIERMLVCQN 105
K+ KKD K + RI+YL E IN TA E+ + L I+ +
Sbjct: 5 KDMKKDVK-LFFFKKRIIYLTDE-----INKKTADELISQLLYLDNINHNDIKIYINSPG 58
Query: 106 CRHTCHRKCYTRIM 119
Sbjct: 59 GSINEGLAILDIFN 72
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 27.0 bits (58), Expect = 7.6
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
L +E+K+ LF+ + + C+ + R+ +
Sbjct: 95 VLLDNVENKMKG-TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLS 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,292,930
Number of extensions: 114056
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 55
Length of query: 625
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 534
Effective length of database: 1,158,166
Effective search space: 618460644
Effective search space used: 618460644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)