BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10138
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WPA|A Chain A, 1.5 Angstrom Crystal Structure Of Human Occludin
          Fragment 413-522
          Length = 114

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 23 KDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLR--RETPGSFAHK 80
          ++Y  I   +QR+ YK +F    +EY+ L ++++ +    + L  +L   RE    +   
Sbjct: 10 REYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAA 69

Query: 81 A-------QGRGSELFHAKMEPC 96
          A       Q +GS  + +K   C
Sbjct: 70 ADEYNRLKQVKGSADYKSKKNHC 92


>pdb|3G7C|A Chain A, Structure Of The Phosphorylation Mimetic Of Occludin
          C-Term Tail
          Length = 113

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 23 KDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQL 69
          ++Y  I   +QR+ YK +F    +EY+ L ++++ +    + L  +L
Sbjct: 9  REYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKEL 55


>pdb|1XAW|A Chain A, Crystal Structure Of The Cytoplasmic Distal C-Terminal
          Domain Of Occludin
          Length = 140

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 23 KDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQL 69
          ++Y  I   +QR+ YK +F    +EY+ L + ++ +    + L  +L
Sbjct: 36 REYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKEL 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,595,989
Number of Sequences: 62578
Number of extensions: 152946
Number of successful extensions: 380
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)