BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10138
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UKU1|ELL2_MOUSE RNA polymerase II elongation factor ELL2 OS=Mus musculus GN=Ell2
PE=2 SV=2
Length = 639
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 54/178 (30%)
Query: 1 MKRGFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVAS 60
+K G T S S++ LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA
Sbjct: 508 VKEG-CTASMEPSSALELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVAR 566
Query: 61 RFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQ 120
RF L Q +R +PGS ++ H E V +
Sbjct: 567 RFIKLDAQRKRLSPGSKEYQN-------VH-------------------EEVLQEY---- 596
Query: 121 NQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
++++ +P YHE K R EYLHNKL+HIK+L+ +D
Sbjct: 597 QKIKQSSPN--------------YHEEKY---------RCEYLHNKLAHIKRLIGEFD 631
>sp|O00472|ELL2_HUMAN RNA polymerase II elongation factor ELL2 OS=Homo sapiens GN=ELL2
PE=1 SV=2
Length = 640
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 53/171 (30%)
Query: 8 TSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQN 67
T++ ++ LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L
Sbjct: 515 TASMEPSAIELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDA 574
Query: 68 QLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRET 127
Q +R +PGS ++ H E V + ++++ +
Sbjct: 575 QRKRLSPGSKEYQN-------VH-------------------EEVLQEY----QKIKQSS 604
Query: 128 PGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
P YHE K R EYLHNKL+HIK+L+ +D
Sbjct: 605 PN--------------YHEEKY---------RCEYLHNKLAHIKRLIGEFD 632
>sp|Q9HB65|ELL3_HUMAN RNA polymerase II elongation factor ELL3 OS=Homo sapiens GN=ELL3
PE=2 SV=2
Length = 397
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 55/165 (33%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ+ Y+ DF Y EY++LHA++ T + RF L +++R
Sbjct: 284 IPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKR------ 337
Query: 78 AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
+RR TP +K ++
Sbjct: 338 ---------------------------------------------VRRGTP---EYKVLE 349
Query: 138 DTIVREYHE-NKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
D I++EY + K + + +RR EYLH KLSHIK L+ ++ N
Sbjct: 350 DKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKN 394
>sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus musculus GN=Ell PE=2
SV=2
Length = 602
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 13 STSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72
++S+ P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+
Sbjct: 482 TSSSETPDYLLKYPAISSSEQRQSYKNDFNAEYSEYRSLHARIEQITRRFTQLDAQLRQL 541
Query: 73 TPGS 76
+ GS
Sbjct: 542 SQGS 545
>sp|P55199|ELL_HUMAN RNA polymerase II elongation factor ELL OS=Homo sapiens GN=ELL PE=1
SV=1
Length = 621
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+ + GS
Sbjct: 507 PDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGS 564
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L QLR+ + GS ++ + I++EY + KT+ + + R EYLH+
Sbjct: 541 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 600
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 601 KLAHIKRLIAEYDQRQLQ 618
>sp|Q5XFX8|ELL3_RAT RNA polymerase II elongation factor ELL3 OS=Rattus norvegicus
GN=Ell3 PE=2 SV=1
Length = 387
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +++R G+ HK ++D IV+EY + K + + +RR EY
Sbjct: 306 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYSEEKRRCEY 365
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 366 LHEKLSHIKGLILEFEEKN 384
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MKRGFATTSTSNSTSTF-LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVA 59
+++ + S S S S +P Y Y+TI EQ++ Y+ DF Y EY++LHA++ +
Sbjct: 256 LEQSLSVQSASESPSPEEVPDYLLQYSTIHSAEQQQAYEQDFETDYAEYRILHARVGAAS 315
Query: 60 SRFASLQNQLRRETPGSFAHKA 81
RF L +++R G+ HK
Sbjct: 316 QRFTELGAEIKRLQRGTPEHKV 337
>sp|Q80VR2|ELL3_MOUSE RNA polymerase II elongation factor ELL3 OS=Mus musculus GN=Ell3
PE=1 SV=1
Length = 395
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +++R G+ HK ++D IV+EY + K + + + R EY
Sbjct: 314 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYREEKHRCEY 373
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 374 LHQKLSHIKGLILEFEEKN 392
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ++ Y+ DF Y EY++LHA++ + RF L +++R G+
Sbjct: 282 VPDYLLQYRAIHSTEQQQAYEQDFETDYAEYRILHARVGAASQRFTELGAEIKRLQRGTP 341
Query: 78 AHKA 81
HK
Sbjct: 342 EHKV 345
>sp|F1MGG3|ELL3_BOVIN RNA polymerase II elongation factor ELL3 OS=Bos taurus GN=ELL3 PE=2
SV=1
Length = 395
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 60/164 (36%), Gaps = 53/164 (32%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ+ Y+ DF Y EY++LHA++ + RF L ++ G+
Sbjct: 282 VPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVAAASQRFIELAAEMNNVQRGTP 341
Query: 78 AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
HKA + + + R+ PG
Sbjct: 342 EHKA------------------------------LEEKIVQEYKKFRKRYPG-------- 363
Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
Y E K RR EYLH KLSHIK L+ ++ N
Sbjct: 364 ------YREEK---------RRCEYLHQKLSHIKGLILEFEEKN 392
>sp|Q0IHQ3|MALD2_XENTR MARVEL domain-containing protein 2 OS=Xenopus tropicalis
GN=marveld2 PE=2 SV=1
Length = 568
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 52/161 (32%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I ++R RYK F++ + EY+ LHA+++ V +F+ L
Sbjct: 450 MPDYVAKYQAIKAEDERERYKAVFNDQFAEYKELHAEVQAVMKKFSELD----------- 498
Query: 78 AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
++ +L R +++I
Sbjct: 499 ----------------------------------------AVMQKLPRNPENQHEYERIA 518
Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
+++EY + K + F + + R EYL NKLSHIK+ + YD
Sbjct: 519 -KVLQEYQKKKNEPTFLEKKERCEYLKNKLSHIKQRIQEYD 558
>sp|Q3UZP0|MALD2_MOUSE MARVEL domain-containing protein 2 OS=Mus musculus GN=Marveld2 PE=1
SV=1
Length = 555
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 52/161 (32%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I + R RYK F + + EY+ L A+++ + +F L
Sbjct: 436 MPDYVAKYPVIQTDDDRERYKAVFQDQFSEYKELSAEVQAILRKFDEL------------ 483
Query: 78 AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
+TV SR ++ R+E H++I
Sbjct: 484 --------------------------------DTVMSRLPH-HSENRQE------HERIS 504
Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
I E+ + K D F + + R +YL NKLSHIK+ + YD
Sbjct: 505 -RIHEEFRKKKNDPSFLEKKERCDYLKNKLSHIKQRIQEYD 544
>sp|Q8N4S9|MALD2_HUMAN MARVEL domain-containing protein 2 OS=Homo sapiens GN=MARVELD2 PE=2
SV=2
Length = 558
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 52/161 (32%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I ++R RYK F + + EY+ L A+++ V +F L + R
Sbjct: 439 MPDYVAKYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSR-----L 493
Query: 78 AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
H ++ R H++I
Sbjct: 494 PHHSESRQE----------------------------------------------HERIS 507
Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
I E+ + K D F + + R +YL NKLSHIK+ + YD
Sbjct: 508 -RIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYD 547
>sp|Q5FS12|MNMG_GLUOX tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Gluconobacter oxydans (strain 621H) GN=mnmG PE=3 SV=1
Length = 618
Score = 33.1 bits (74), Expect = 0.97, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 13 STSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71
+ +TFLP+ +D V L+ RRR D S + H K++T+A FA L ++RR
Sbjct: 481 AETTFLPQTLRDVGFEVSLDGRRRTVLDVLASNGD----HTKLDTLAPWFAELPLRVRR 535
>sp|Q9H607|OCEL1_HUMAN Occludin/ELL domain-containing protein 1 OS=Homo sapiens GN=OCEL1
PE=2 SV=1
Length = 264
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 102 LSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFE 161
+ A AK+ + + +SL P S Q+ + RE+ + D F D + R
Sbjct: 183 VGCAQAKLRQLEALLSSL------PPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCH 236
Query: 162 YLHNKLSHIKKLVFIYDSNN 181
YL KL H+K + +D
Sbjct: 237 YLKGKLRHLKTQIQKFDDQG 256
>sp|Q2UGU1|LIS1_ASPOR Nuclear distribution protein nudF OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=nudF PE=3 SV=2
Length = 455
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 28 IVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSE 87
+ D +RY+ + + L KI + SR A+LQ++L TP S + Q S
Sbjct: 43 VFDPTTAKRYEGMLEKKWTSIARLQKKIMDLESRNATLQSELDNSTPASRLKRNQDPASW 102
Query: 88 LFHAKMEPCCFRFRLSIAAAKIETVA 113
L P R+ L K+ VA
Sbjct: 103 L------PSTVRYSLESHRDKVNCVA 122
>sp|B8N9H4|LIS1_ASPFN Nuclear distribution protein nudF OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=nudF PE=3 SV=2
Length = 455
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 28 IVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSE 87
+ D +RY+ + + L KI + SR A+LQ++L TP S + Q S
Sbjct: 43 VFDPTTAKRYEGMLEKKWTSIARLQKKIMDLESRNATLQSELDNSTPASRLKRNQDPASW 102
Query: 88 LFHAKMEPCCFRFRLSIAAAKIETVA 113
L P R+ L K+ VA
Sbjct: 103 L------PSTVRYSLESHRDKVNCVA 122
>sp|Q91049|OCLN_CHICK Occludin OS=Gallus gallus GN=OCLN PE=1 SV=1
Length = 504
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 20 KYEKDYTTIV------DLEQ-------------RRRYKNDFSESYKEYQMLHAKIETVAS 60
+YE DYTT V D EQ R+RYK +F K Y+ L A+++++
Sbjct: 378 QYETDYTTAVESSDERDQEQWASLYPPITSDGARQRYKQEFDTDLKRYKQLCAEMDSIND 437
Query: 61 RFASLQNQLRR 71
R NQL R
Sbjct: 438 RL----NQLSR 444
>sp|Q61146|OCLN_MOUSE Occludin OS=Mus musculus GN=Ocln PE=1 SV=1
Length = 521
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 21 YEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQL 69
+ ++Y I +QR+ YK +F +EY+ L A+++ V + L +L
Sbjct: 415 WVREYPPITSDQQRQLYKRNFDAGLQEYKSLQAELDDVNKELSRLDKEL 463
>sp|P14814|VG14_BPPH8 Replication protein 14 OS=Enterobacteria phage phi80 GN=14 PE=3
SV=1
Length = 229
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 30 DLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELF 89
D EQ R ++ E Y+E A +E VA F L N+LR P S A+ F
Sbjct: 12 DREQMSRMAHNLPEQYQEC----APVEQVAQVFNKLFNELRAAFPASMAN---------F 58
Query: 90 HAKMEPCCFR--FRLSIAAAKIETVASRFASLQNQLRRE-----TPGSFAHKQIQ----- 137
+ + FR + L+ I T+A A ++ R+E +PG F Q
Sbjct: 59 RTQEDLNEFRRQWLLAFQENGIHTMAQVDAGMRIARRQERPFLPSPGQFVAWCKQSGGAL 118
Query: 138 ----DTIVREYHENKTDRKFE 154
D ++ EY E + +R FE
Sbjct: 119 GVNVDQVIAEYWEWR-NRSFE 138
>sp|Q28269|OCLN_CANFA Occludin OS=Canis familiaris GN=OCLN PE=1 SV=1
Length = 521
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 21 YEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQL 69
+ ++Y I +QR+ YK +F +EY+ L A+++ + + L +L
Sbjct: 415 WIREYPPITSDQQRQLYKRNFDTGLQEYKSLQAELDEINKELSRLDKEL 463
>sp|C0S902|LIS1_PARBP Nuclear distribution protein PAC1 OS=Paracoccidioides brasiliensis
(strain Pb03) GN=PAC1 PE=3 SV=1
Length = 497
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSEL 88
+D ++Y+ + + L KI + SR +LQ++L TP S A + Q S L
Sbjct: 43 LDDSTAKKYEGLLEKKWTSVVRLQKKIMDLESRNNALQSELDSATPTSLARRNQDPVSWL 102
Query: 89 FHA 91
HA
Sbjct: 103 PHA 105
>sp|C1GB49|LIS1_PARBD Nuclear distribution protein PAC1 OS=Paracoccidioides brasiliensis
(strain Pb18) GN=PAC1 PE=3 SV=1
Length = 478
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSEL 88
+D ++Y+ + + L KI + SR +LQ++L TP S A + Q S L
Sbjct: 43 LDDSTAKKYEGLLEKKWTSVVRLQKKIMDLESRNNALQSELDSATPTSLARRNQDPVSWL 102
Query: 89 FHA 91
HA
Sbjct: 103 PHA 105
>sp|Q9C0V8|YHJ1_SCHPO Uncharacterized transporter PB10D8.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPB10D8.01 PE=3 SV=1
Length = 552
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 11 SNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRF 62
+ ST+ FL K E+ YT VD +R + S+++K+YQ++ A + V F
Sbjct: 271 NTSTARFLTKKERLYT--VDRVRRSNHSGIESKTFKKYQVIEALKDPVTWLF 320
>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1
Length = 114
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 108 KIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHEN-KTDRKFEDCRRRFEYLHNK 166
K+ET ++ N+L + P S +KQI T+V++ HE KT + + R ++++ +
Sbjct: 24 KLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKT-----NVKTRLDFINKE 78
Query: 167 LSHI 170
++ +
Sbjct: 79 IARL 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,746,267
Number of Sequences: 539616
Number of extensions: 2122896
Number of successful extensions: 6652
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6595
Number of HSP's gapped (non-prelim): 63
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)