Query psy10138
Match_columns 183
No_of_seqs 107 out of 180
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 18:48:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07303 Occludin_ELL: Occludi 100.0 3.2E-40 6.9E-45 249.6 12.3 100 25-179 1-101 (101)
2 KOG4796|consensus 100.0 4.3E-39 9.3E-44 300.5 14.3 121 9-182 478-598 (604)
3 PF10805 DUF2730: Protein of u 76.2 8.2 0.00018 29.4 5.4 62 46-124 35-96 (106)
4 PF04977 DivIC: Septum formati 76.0 13 0.00028 25.3 5.9 30 42-71 13-42 (80)
5 cd07605 I-BAR_IMD Inverse (I)- 72.4 21 0.00047 30.8 7.6 39 30-68 102-141 (223)
6 PF11932 DUF3450: Protein of u 71.0 32 0.0007 29.1 8.3 52 114-165 84-138 (251)
7 PRK09343 prefoldin subunit bet 70.4 48 0.001 25.7 10.0 34 38-71 6-39 (121)
8 PF13801 Metal_resist: Heavy-m 62.5 36 0.00077 23.8 5.9 40 29-71 42-81 (125)
9 PF10393 Matrilin_ccoil: Trime 60.8 15 0.00033 25.2 3.6 30 40-69 16-46 (47)
10 KOG3208|consensus 59.3 29 0.00063 30.9 6.0 72 47-164 52-123 (231)
11 PRK00888 ftsB cell division pr 54.5 50 0.0011 25.2 5.9 26 46-71 27-52 (105)
12 COG1382 GimC Prefoldin, chaper 54.2 1.1E+02 0.0025 24.5 9.5 32 40-71 7-38 (119)
13 TIGR02338 gimC_beta prefoldin, 48.3 47 0.001 25.0 4.9 32 40-71 4-35 (110)
14 PF04420 CHD5: CHD5-like prote 47.8 34 0.00074 27.7 4.3 30 42-71 62-91 (161)
15 KOG3433|consensus 42.5 2.4E+02 0.0052 24.9 9.2 121 28-174 5-132 (203)
16 COG5648 NHP6B Chromatin-associ 41.4 25 0.00054 30.9 2.7 27 30-56 113-139 (211)
17 cd00632 Prefoldin_beta Prefold 41.3 51 0.0011 24.5 4.1 30 42-71 2-31 (105)
18 KOG3478|consensus 40.8 2E+02 0.0044 23.5 8.7 79 39-124 5-93 (120)
19 PF10191 COG7: Golgi complex c 40.1 4E+02 0.0087 26.8 11.7 48 131-179 144-197 (766)
20 PRK11546 zraP zinc resistance 39.9 2.1E+02 0.0047 23.6 8.6 62 29-123 44-105 (143)
21 PLN03217 transcription factor 39.8 32 0.00068 26.9 2.8 32 37-68 47-78 (93)
22 PF04508 Pox_A_type_inc: Viral 39.4 41 0.00088 20.3 2.6 20 54-73 2-21 (23)
23 PF11460 DUF3007: Protein of u 39.1 61 0.0013 25.7 4.3 30 29-60 63-92 (104)
24 PF04380 BMFP: Membrane fusoge 38.8 60 0.0013 23.6 4.0 29 39-67 50-78 (79)
25 TIGR03007 pepcterm_ChnLen poly 38.0 2.8E+02 0.006 25.3 9.0 34 32-65 261-294 (498)
26 COG2433 Uncharacterized conser 37.5 1.5E+02 0.0032 30.1 7.6 24 150-173 487-510 (652)
27 COG5665 NOT5 CCR4-NOT transcri 37.2 1.8E+02 0.0039 28.6 7.9 107 39-180 12-134 (548)
28 PF01920 Prefoldin_2: Prefoldi 35.0 1E+02 0.0022 21.9 4.7 32 39-70 5-36 (106)
29 PRK09039 hypothetical protein; 34.9 1.9E+02 0.0041 26.2 7.4 35 37-71 128-162 (343)
30 TIGR01005 eps_transp_fam exopo 33.8 3.9E+02 0.0085 26.0 9.7 72 39-136 309-381 (754)
31 COG1383 RPS17A Ribosomal prote 32.0 51 0.0011 24.9 2.7 30 32-61 15-44 (74)
32 KOG0759|consensus 31.8 28 0.00062 31.8 1.7 20 31-50 132-151 (286)
33 PF15619 Lebercilin: Ciliary p 31.6 3.2E+02 0.0069 23.1 10.0 34 39-72 5-38 (194)
34 PF04129 Vps52: Vps52 / Sac2 f 31.5 2.9E+02 0.0063 26.2 8.3 59 39-123 7-65 (508)
35 PF12776 Myb_DNA-bind_3: Myb/S 31.5 1.6E+02 0.0035 20.5 5.2 37 139-175 36-73 (96)
36 TIGR03017 EpsF chain length de 30.5 3.9E+02 0.0084 23.9 8.5 30 35-64 271-300 (444)
37 PF14131 DUF4298: Domain of un 28.9 1.6E+02 0.0034 21.9 4.9 34 39-72 3-36 (90)
38 PF05823 Gp-FAR-1: Nematode fa 28.8 2.1E+02 0.0045 23.2 6.0 54 17-71 9-69 (154)
39 PF04977 DivIC: Septum formati 28.2 1.3E+02 0.0028 20.3 4.1 31 42-72 20-50 (80)
40 TIGR02864 spore_sspO small, ac 27.3 24 0.00053 24.8 0.4 19 73-91 10-28 (50)
41 PRK03918 chromosome segregatio 27.3 5.9E+02 0.013 24.8 11.6 65 41-128 520-584 (880)
42 PF06667 PspB: Phage shock pro 27.2 1.7E+02 0.0037 21.7 4.8 32 43-74 39-70 (75)
43 PRK09458 pspB phage shock prot 26.5 1.8E+02 0.0038 21.9 4.8 33 43-75 39-71 (75)
44 PTZ00332 paraflagellar rod pro 26.3 3.1E+02 0.0067 27.5 7.7 45 28-72 292-336 (589)
45 cd00084 HMG-box High Mobility 25.9 1.2E+02 0.0026 19.3 3.4 23 29-51 42-64 (66)
46 PF00726 IL10: Interleukin 10 25.3 1.1E+02 0.0025 25.5 4.0 35 39-73 89-123 (170)
47 COG1155 NtpA Archaeal/vacuolar 25.1 1.8E+02 0.0038 29.3 5.8 59 21-87 420-479 (588)
48 PF02183 HALZ: Homeobox associ 24.8 2.2E+02 0.0048 19.0 4.9 34 37-70 10-43 (45)
49 PF13949 ALIX_LYPXL_bnd: ALIX 24.5 2.8E+02 0.0061 23.3 6.2 41 31-71 240-280 (296)
50 PF02185 HR1: Hr1 repeat; Int 24.3 87 0.0019 21.7 2.7 29 153-181 42-70 (70)
51 PF12563 Hemolysin_N: Hemolyti 24.2 68 0.0015 27.8 2.6 26 20-45 78-103 (187)
52 PF08285 DPM3: Dolichol-phosph 24.1 88 0.0019 23.7 2.9 24 40-63 62-85 (91)
53 PF08227 DASH_Hsk3: DASH compl 24.0 1.5E+02 0.0033 20.2 3.7 25 47-71 3-27 (45)
54 TIGR02976 phageshock_pspB phag 23.9 2.1E+02 0.0045 21.1 4.8 31 44-74 40-70 (75)
55 PRK13922 rod shape-determining 23.6 2.4E+02 0.0051 24.0 5.7 34 38-71 61-94 (276)
56 PF04111 APG6: Autophagy prote 23.2 2.9E+02 0.0063 24.8 6.4 89 30-172 41-134 (314)
57 smart00721 BAR BAR domain. 23.1 3.9E+02 0.0084 21.3 8.0 26 34-59 29-54 (239)
58 KOG3251|consensus 22.2 5.5E+02 0.012 22.7 9.7 62 48-133 5-66 (213)
59 PF10018 Med4: Vitamin-D-recep 22.1 1.7E+02 0.0037 24.0 4.4 28 44-71 20-47 (188)
60 KOG4593|consensus 21.5 4.6E+02 0.01 27.1 8.0 106 45-177 192-301 (716)
61 PF04799 Fzo_mitofusin: fzo-li 21.3 2.2E+02 0.0048 24.2 5.0 30 153-182 139-168 (171)
62 cd01390 HMGB-UBF_HMG-box HMGB- 21.3 1.5E+02 0.0032 19.1 3.2 22 29-50 42-63 (66)
63 PF00505 HMG_box: HMG (high mo 20.9 1.6E+02 0.0034 19.2 3.3 25 29-53 42-66 (69)
64 PF08663 HalX: HalX domain; I 20.7 1.6E+02 0.0034 21.5 3.5 26 45-70 35-60 (71)
65 PF08172 CASP_C: CASP C termin 20.7 2.7E+02 0.0058 24.5 5.6 36 32-67 86-121 (248)
No 1
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=100.00 E-value=3.2e-40 Score=249.59 Aligned_cols=100 Identities=46% Similarity=0.839 Sum_probs=89.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhH
Q psy10138 25 YTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSI 104 (183)
Q Consensus 25 Yp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~ 104 (183)
||||+|.+||++||++|+++|+||++||++|++|+++|++|+++|++
T Consensus 1 Yp~I~s~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~--------------------------------- 47 (101)
T PF07303_consen 1 YPPITSSEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKR--------------------------------- 47 (101)
T ss_dssp S----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHhhHHHHHHHHhhhhc
Q psy10138 105 AAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHEN-KTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDS 179 (183)
Q Consensus 105 ~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kk-k~dp~f~~kk~Rc~YL~~KLsHIK~lI~~yD~ 179 (183)
+++||.+|+.|+ +|++||+++ ++||+|+++|.||+|||+||+|||++|.+||+
T Consensus 48 ---------------------l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I~~yD~ 101 (101)
T PF07303_consen 48 ---------------------LPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLIQDYDQ 101 (101)
T ss_dssp ---------------------S-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 446899999999 999999997 79999999999999999999999999999995
No 2
>KOG4796|consensus
Probab=100.00 E-value=4.3e-39 Score=300.50 Aligned_cols=121 Identities=43% Similarity=0.712 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccc
Q psy10138 9 STSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSEL 88 (183)
Q Consensus 9 ~~~~~~~~~~pDY~~kYp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l 88 (183)
+++.|+++++|||+++|++|.|+|||++||+||+++|.||++||++|+.|.+||.+|+++|++.
T Consensus 478 ~~~~Pss~~tPdYllqY~aI~S~eqr~~Yk~dF~~eY~EYreLharve~vs~rF~~Lea~L~sr---------------- 541 (604)
T KOG4796|consen 478 SSSSPSSSPTPDYLLQYGAISSLEQRQRYKKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSR---------------- 541 (604)
T ss_pred cccCCCCCCCcchhhhccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 4467889999999999999999999999999999999999999999999999999999999951
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhHH
Q psy10138 89 FHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLS 168 (183)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kkk~dp~f~~kk~Rc~YL~~KLs 168 (183)
+.+||++|++|+++|++||+++++||+|.++|+||+|||+||+
T Consensus 542 -------------------------------------ls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLa 584 (604)
T KOG4796|consen 542 -------------------------------------LSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLA 584 (604)
T ss_pred -------------------------------------cCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccC
Q psy10138 169 HIKKLVFIYDSNNL 182 (183)
Q Consensus 169 HIK~lI~~yD~~~~ 182 (183)
|||.||.+||+++.
T Consensus 585 HIK~lI~efDk~~~ 598 (604)
T KOG4796|consen 585 HIKTLIGEFDKQQR 598 (604)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999874
No 3
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.24 E-value=8.2 Score=29.39 Aligned_cols=62 Identities=15% Similarity=0.336 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhc
Q psy10138 46 KEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLR 124 (183)
Q Consensus 46 ~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~ 124 (183)
.+...|.+++.....|++.||+.|+.+|--.--|+- ...++.-...+.++.+.+-.+.+++.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L-----------------~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDL-----------------QLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-----------------HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567779999999999999999999999853222321 12344444456666677766666654
No 4
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.05 E-value=13 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
...+.+|..+++++..+.+++.+|..+.+.
T Consensus 13 ~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~ 42 (80)
T PF04977_consen 13 ISGYSRYYQLNQEIAELQKEIEELKKENEE 42 (80)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555554444
No 5
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=72.37 E-value=21 Score=30.77 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10138 30 DLEQRRRYKNDFSESYK-EYQMLHAKIETVASRFASLQNQ 68 (183)
Q Consensus 30 s~eqR~rYK~~F~~~Y~-EY~~Lha~v~~v~~rf~~L~~~ 68 (183)
..|+-.+|-+.++.+|. ||+...++|+...+.+..|+..
T Consensus 102 k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 102 KLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788888888885 8898888998888887777763
No 6
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.95 E-value=32 Score=29.06 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHh-hcCCCChHHH--HHHHHHHHh
Q psy10138 114 SRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDC--RRRFEYLHN 165 (183)
Q Consensus 114 ~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~k-kk~dp~f~~k--k~Rc~YL~~ 165 (183)
.-+++|+.++........+-.-+-.+++.+.+. ...|..|... ..|-+-|+.
T Consensus 84 ~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~ 138 (251)
T PF11932_consen 84 QELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRA 138 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 334444444432222222333344455666666 6778888443 455544444
No 7
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.43 E-value=48 Score=25.70 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 38 KNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 38 K~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
-..++....+|+.|+.++..+....+.|+.+++.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e 39 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELRE 39 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999888
No 8
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=62.47 E-value=36 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
-|++|+...++...+-+.+...+.+++.. ...+|..+|..
T Consensus 42 Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~---~r~~l~~ll~~ 81 (125)
T PF13801_consen 42 LTPEQQAKLRALMDEFRQEMRALRQELRA---ARQELRALLAA 81 (125)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcC
Confidence 47899999999999999999999988765 55666777777
No 9
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=60.84 E-value=15 Score=25.16 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=22.9
Q ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10138 40 DFSESYKE-YQMLHAKIETVASRFASLQNQL 69 (183)
Q Consensus 40 ~F~~~Y~E-Y~~Lha~v~~v~~rf~~L~~~L 69 (183)
.|++.=.+ -+.|.+++++|++|++.||+++
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35554433 3578999999999999999875
No 10
>KOG3208|consensus
Probab=59.30 E-value=29 Score=30.90 Aligned_cols=72 Identities=17% Similarity=0.372 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccC
Q psy10138 47 EYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRE 126 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~ 126 (183)
-++.+-.+|+.+..+++++-..|..|.- ..|-.|+..|.|.|
T Consensus 52 s~ks~~~eie~LLeql~~vndsm~~~~~-------------------------------------s~a~~aa~~htL~R- 93 (231)
T KOG3208|consen 52 SFKSLENEIEGLLEQLQDVNDSMNDCAS-------------------------------------SPANSAAVMHTLQR- 93 (231)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhcc-------------------------------------CCCCcHHHHHHHHH-
Confidence 4677889999999999999999988521 11224555666654
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy10138 127 TPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLH 164 (183)
Q Consensus 127 ~~gS~e~~~i~~~I~rEY~kkk~dp~f~~kk~Rc~YL~ 164 (183)
|.+|-+.-.+||++.+.+ +..+++|-.-|-
T Consensus 94 ------HrEILqdy~qef~rir~n--~~a~~e~~~Ll~ 123 (231)
T KOG3208|consen 94 ------HREILQDYTQEFRRIRSN--IDAKRERESLLE 123 (231)
T ss_pred ------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 556656667777775555 777777765443
No 11
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.48 E-value=50 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 46 KEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 46 ~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
-.|.+|+++++...+++++|+.+-..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777776666654444
No 12
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.25 E-value=1.1e+02 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=29.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 40 DFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 40 ~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.-++.+.+|+.||.++..+.-+-++|+++|+.
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.29 E-value=47 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 40 DFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 40 ~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.+++...+|+.++.++..+....+.|+.+++.
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E 35 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKE 35 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999988876
No 14
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=47.75 E-value=34 Score=27.66 Aligned_cols=30 Identities=13% Similarity=0.431 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
+|+|..|-.|.++++.+.+.++++.+++..
T Consensus 62 qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 62 QDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999998887
No 15
>KOG3433|consensus
Probab=42.54 E-value=2.4e+02 Score=24.87 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCCCCccccccCCCccccccccccch---hhh
Q psy10138 28 IVDLEQRRRYKNDFSESYKEYQMLHAKIETVASR----FASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCC---FRF 100 (183)
Q Consensus 28 I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~r----f~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~---~~~ 100 (183)
++++|-|.+-.+-|++.=.+|+- .+|+.+..+ .+.....|.+| |+.+|-...-..-+ -.|
T Consensus 5 ls~~ekr~~l~eIf~eskDff~L--kelEKlG~kKgIv~~tvKdvLQsL-----------vDD~lV~~eKIgtSnyywsf 71 (203)
T KOG3433|consen 5 LSSDEKRMILLEIFQESKDFFQL--KELEKLGSKKGIVWQTVKDVLQSL-----------VDDGLVIKEKIGTSNYYWSF 71 (203)
T ss_pred cchHHHHHHHHHHHHhhHhHHHH--HHHHHhCCccceehhHHHHHHHHH-----------hccchHHHHHhccccccccc
Confidence 68899999999999998888753 334444333 22223333332 22232221111111 012
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhHHHHHHHH
Q psy10138 101 RLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLV 174 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kkk~dp~f~~kk~Rc~YL~~KLsHIK~lI 174 (183)
|+-+ |-...++.-.|+.||. .|+++...+.+ -.++.|.+..+- ..|-+-|.+||.|+|+.+
T Consensus 72 ps~a----~~~~ks~~qeLe~~L~---~~~qk~~tl~e----~~en~K~~~e~t--Eer~~el~kklnslkk~~ 132 (203)
T KOG3433|consen 72 PSEA----ICDRKSVLQELESQLA---TGSQKKATLGE----SIENRKAGREET--EERTDELTKKLNSLKKIL 132 (203)
T ss_pred chHH----HHHHHHHHHHHHHHHH---HhhhhHhHHHH----HHHHHHhhhhhh--HHHHHHHHHHHHHHHHHH
Confidence 2222 2224566777888886 47888777743 333445554443 456678999999999843
No 16
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=41.36 E-value=25 Score=30.88 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10138 30 DLEQRRRYKNDFSESYKEYQMLHAKIE 56 (183)
Q Consensus 30 s~eqR~rYK~~F~~~Y~EY~~Lha~v~ 56 (183)
++++|+.|...++.++..|+..-.+-.
T Consensus 113 td~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 113 TDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred cHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 488999999999999999998765544
No 17
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.29 E-value=51 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
++...+|+.|+.++..+....+.|+.+++.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888766
No 18
>KOG3478|consensus
Probab=40.82 E-value=2e+02 Score=23.49 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cCCCCccccccCCCccccccccccchhhhhhhHHHHH
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLRR----------ETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK 108 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~----------lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~ 108 (183)
..|.+.-..|+.|+.+++....--+.|+.+|.. +.+.|+--| |..|+.++.----+-+.---.
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYK-------liGpvLvkqel~EAr~nV~kR 77 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYK-------LIGPVLVKQELEEARTNVGKR 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHH-------HhcchhhHHHHHHHHhhHHHH
Confidence 467778888999999999988888888887754 333333222 344444444333333333345
Q ss_pred HHHHHHHHHhhhhhhc
Q psy10138 109 IETVASRFASLQNQLR 124 (183)
Q Consensus 109 ~~~~~~~~a~~~~ql~ 124 (183)
||-+.+-++.++++++
T Consensus 78 lefI~~Eikr~e~~i~ 93 (120)
T KOG3478|consen 78 LEFISKEIKRLENQIR 93 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666677776664
No 19
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=40.11 E-value=4e+02 Score=26.79 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHh----hcCCCChHHHHHHHHHHHhhHHHH--HHHHhhhhc
Q psy10138 131 FAHKQIQDTIVREYHE----NKTDRKFEDCRRRFEYLHNKLSHI--KKLVFIYDS 179 (183)
Q Consensus 131 ~e~~~i~~~I~rEY~k----kk~dp~f~~kk~Rc~YL~~KLsHI--K~lI~~yD~ 179 (183)
..+..|.++| .+-++ .+.-|+|.+++...+.|+|+|..+ =++|..+.+
T Consensus 144 ~d~~~~a~~l-~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~ 197 (766)
T PF10191_consen 144 GDIAKIADRL-AEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALNS 197 (766)
T ss_pred CCHHHHHHHH-HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3555664443 33443 577999999999999999999887 234444433
No 20
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.89 E-value=2.1e+02 Score=23.56 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK 108 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~ 108 (183)
.++||...+..-.++=|.+...|..+|-+ +=.+|.++|.+-+|. -+|
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~a---Kr~ELnALl~~~~pD------------------------------~~k 90 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVS---KRYEYNALLTANPPD------------------------------SSK 90 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCC------------------------------HHH
Confidence 46788888888888888888888887765 556777777774432 357
Q ss_pred HHHHHHHHHhhhhhh
Q psy10138 109 IETVASRFASLQNQL 123 (183)
Q Consensus 109 ~~~~~~~~a~~~~ql 123 (183)
|..++.-++.|..+|
T Consensus 91 I~aL~kEI~~Lr~kL 105 (143)
T PRK11546 91 INAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888666
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=39.83 E-value=32 Score=26.94 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10138 37 YKNDFSESYKEYQMLHAKIETVASRFASLQNQ 68 (183)
Q Consensus 37 YK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~ 68 (183)
=..+.++--.=-+.||.||++++.++.+|=+-
T Consensus 47 askvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 47 AARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666789999999999999998653
No 22
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=39.45 E-value=41 Score=20.29 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy10138 54 KIETVASRFASLQNQLRRET 73 (183)
Q Consensus 54 ~v~~v~~rf~~L~~~L~~lp 73 (183)
+|+..-.++.+|+.+|..|-
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999864
No 23
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=39.05 E-value=61 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVAS 60 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~ 60 (183)
|=.+||++|++.++.-=.| +|+++++++..
T Consensus 63 Ty~~Q~k~Ye~a~~~~~~~--~lqkRle~l~~ 92 (104)
T PF11460_consen 63 TYMQQRKDYEEAVDQLTNE--ELQKRLEELSP 92 (104)
T ss_pred cHHHHHHHHHHHHHHHhHH--HHHHHHHhCCH
Confidence 4468999999998766666 67776666653
No 24
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=38.83 E-value=60 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=15.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQN 67 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~ 67 (183)
.+|+.+=..-..+..+|+++-+|++.|++
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555543
No 25
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.04 E-value=2.8e+02 Score=25.31 Aligned_cols=34 Identities=6% Similarity=0.074 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10138 32 EQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65 (183)
Q Consensus 32 eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L 65 (183)
.|+..-...|.++|...+.|.++|+++.+.+.+.
T Consensus 261 ~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 261 KQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 3444455678888888888888887777765543
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.47 E-value=1.5e+02 Score=30.11 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHhhHHHHHHH
Q psy10138 150 DRKFEDCRRRFEYLHNKLSHIKKL 173 (183)
Q Consensus 150 dp~f~~kk~Rc~YL~~KLsHIK~l 173 (183)
.....+++.+-+-|++||.-++++
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 487 EKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999843
No 27
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=37.24 E-value=1.8e+02 Score=28.56 Aligned_cols=107 Identities=18% Similarity=0.342 Sum_probs=69.7
Q ss_pred HHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHH
Q psy10138 39 NDFSESYKEYQ---------MLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKI 109 (183)
Q Consensus 39 ~~F~~~Y~EY~---------~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (183)
++|++-|+.+. .|...+..-.++|+.|..+++. |++|
T Consensus 12 ~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqikt---------------------------------w~s~- 57 (548)
T COG5665 12 EDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKT---------------------------------WLSK- 57 (548)
T ss_pred hhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHH---------------------------------hhcc-
Confidence 57888887775 3555555566666766666666 6654
Q ss_pred HHHHHHHHhhhhhhccCCCCCHHHHHHHHHHH-HHHHh------hcCCCChHHHHHHHHHHHhhHHHHHHHHhhhhcc
Q psy10138 110 ETVASRFASLQNQLRRETPGSFAHKQIQDTIV-REYHE------NKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSN 180 (183)
Q Consensus 110 ~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~-rEY~k------kk~dp~f~~kk~Rc~YL~~KLsHIK~lI~~yD~~ 180 (183)
+.|----|+|.|.-. ...|..+++.++..+. ..|.+ -+-||+=+++|....++|+-|.-|-++...|.-+
T Consensus 58 ~dikdk~~l~~nrrl-ie~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~ 134 (548)
T COG5665 58 EDVKDKQVLMTNRRL-IENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ 134 (548)
T ss_pred cccchHHHHHHhHHH-HHhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH
Confidence 344555567776433 3345667777643321 22333 3568888899999999999999998888777643
No 28
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.97 E-value=1e+02 Score=21.87 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLR 70 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~ 70 (183)
+.|+.-..++..+.+++..+...+.+++.-+.
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~ 36 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLE 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555544333
No 29
>PRK09039 hypothetical protein; Validated
Probab=34.87 E-value=1.9e+02 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 37 YKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 37 YK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
=++.+.+.+.+-..|.++|+++.++++.|+..|..
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888888888888877
No 30
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.80 E-value=3.9e+02 Score=25.98 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=40.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHH
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASL-QNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFA 117 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L-~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 117 (183)
..|.++|...+.|.++|+.+.+.+.+. ...+.++ .-....+.+..++..+.++
T Consensus 309 ~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~--------------------------~~~~~~a~~~~~~L~~~l~ 362 (754)
T TIGR01005 309 TTMLANHPRVVAAKSSLADLDAQIRSELQKITKSL--------------------------LMQADAAQARESQLVSDVN 362 (754)
T ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777765442 2222221 1123445555556666666
Q ss_pred hhhhhhccCCCCCHHHHHH
Q psy10138 118 SLQNQLRRETPGSFAHKQI 136 (183)
Q Consensus 118 ~~~~ql~r~~~gS~e~~~i 136 (183)
.++.++..++....+|.++
T Consensus 363 ~~~~~~~~~~~~~~e~~~L 381 (754)
T TIGR01005 363 QLKAASAQAGEQQVDLDAL 381 (754)
T ss_pred HHHHHHHhCcHhHHHHHHH
Confidence 6666665444444455554
No 31
>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=51 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.481 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10138 32 EQRRRYKNDFSESYKEYQMLHAKIETVASR 61 (183)
Q Consensus 32 eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~r 61 (183)
+==.+|...|.++|++=+.+-.++..+.++
T Consensus 15 el~ekY~~~ft~dFe~NK~~V~e~~~i~SK 44 (74)
T COG1383 15 ELIEKYPDKFTDDFETNKRLVEELANIQSK 44 (74)
T ss_pred HHHHHhHHHhcccHHHHHHHHHHHhcchhH
Confidence 344689999999999999999999998876
No 32
>KOG0759|consensus
Probab=31.78 E-value=28 Score=31.79 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy10138 31 LEQRRRYKNDFSESYKEYQM 50 (183)
Q Consensus 31 ~eqR~rYK~~F~~~Y~EY~~ 50 (183)
++|||.||++|+.-+.=|++
T Consensus 132 ~~~RRNYknv~dgL~rI~re 151 (286)
T KOG0759|consen 132 PEQRRNYKNVFDGLVRITRE 151 (286)
T ss_pred HHHhhhhhhHhhHHhhhhhh
Confidence 68999999999998877765
No 33
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.62 E-value=3.2e+02 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
.+.++---.+.+|+.+|..+..++++|..+.+-|
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666778899999999999999998877664
No 34
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.48 E-value=2.9e+02 Score=26.19 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHh
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFAS 118 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 118 (183)
.++-++-+++.+||.+|.+.-.-+..|+..|.. |.-.|++....|.++=-.+..
T Consensus 7 ~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~--------------------------Fq~~L~~iS~eI~~LQ~~S~~ 60 (508)
T PF04129_consen 7 QDYLKESENFADLHNQIQECDSILESLEEMLSN--------------------------FQNDLGSISSEIRSLQERSSS 60 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345555677888888888888888888887777 444555555566555555554
Q ss_pred hhhhh
Q psy10138 119 LQNQL 123 (183)
Q Consensus 119 ~~~ql 123 (183)
|...|
T Consensus 61 l~~~L 65 (508)
T PF04129_consen 61 LNVKL 65 (508)
T ss_pred HHHHH
Confidence 44443
No 35
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=31.48 E-value=1.6e+02 Score=20.50 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHh-hcCCCChHHHHHHHHHHHhhHHHHHHHHh
Q psy10138 139 TIVREYHE-NKTDRKFEDCRRRFEYLHNKLSHIKKLVF 175 (183)
Q Consensus 139 ~I~rEY~k-kk~dp~f~~kk~Rc~YL~~KLsHIK~lI~ 175 (183)
.|+.++++ -...-+....+.|+..|+.+-.-++.|..
T Consensus 36 ~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~ 73 (96)
T PF12776_consen 36 NIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRN 73 (96)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34777777 34444568889999999999999988864
No 36
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.51 E-value=3.9e+02 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10138 35 RRYKNDFSESYKEYQMLHAKIETVASRFAS 64 (183)
Q Consensus 35 ~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~ 64 (183)
......|.++|...+.|.++++.+.+.+.+
T Consensus 271 ~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 271 AELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888887777766543
No 37
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=28.85 E-value=1.6e+02 Score=21.91 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
++.++-|.++..|..+++++..+|+.....++.|
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L 36 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKL 36 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999998888875
No 38
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=28.76 E-value=2.1e+02 Score=23.18 Aligned_cols=54 Identities=13% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q psy10138 17 FLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLH-------AKIETVASRFASLQNQLRR 71 (183)
Q Consensus 17 ~~pDY~~kYp~I~s~eqR~rYK~~F~~~Y~EY~~Lh-------a~v~~v~~rf~~L~~~L~~ 71 (183)
.+|.....+-.--+.+|+..-+.+|++ |..|+..- .+-..+..++..|...++.
T Consensus 9 ~iP~ev~~~~~~Lt~eeK~~lkev~~~-~~~~~~~de~i~~LK~ksP~L~~k~~~l~~~~k~ 69 (154)
T PF05823_consen 9 LIPSEVVEFYKNLTPEEKAELKEVAKN-YAKFKNEDEMIAALKEKSPSLYEKAEKLRDKLKK 69 (154)
T ss_dssp T--HHHHHHHHH--TTTHHHHHHHHTT--------TTHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHcCCHHHHHHHHHHHHH-ccccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 456655555555677888888877776 87777533 3333444444445444444
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.22 E-value=1.3e+02 Score=20.29 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
..--.++.+|..+++.+.++..+|+.++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788999999999999999999999996
No 40
>TIGR02864 spore_sspO small, acid-soluble spore protein O. This model represents a minor (low-abundance) spore protein, designated SspO. It is found in a very limited subset of the already small group of endospore-forming bacteria, but these species include Oceanobacillus iheyensis, Geobacillus kaustophilus, Bacillus subtilis, B. halodurans, and B. cereus. This protein was previously called CotK.
Probab=27.26 E-value=24 Score=24.84 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=16.8
Q ss_pred CCCCccccccCCCcccccc
Q psy10138 73 TPGSFAHKAQGRGSELFHA 91 (183)
Q Consensus 73 p~g~~~~~~q~~~~~l~~~ 91 (183)
-||+|+.++||-|.|+|+.
T Consensus 10 ~~gmn~a~~qG~gag~y~~ 28 (50)
T TIGR02864 10 INGMNAAKAQGKGAGQFDE 28 (50)
T ss_pred cccchHHHhcCCCcccchh
Confidence 5799999999999998865
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=27.25 E-value=5.9e+02 Score=24.83 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=40.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHhhh
Q psy10138 41 FSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQ 120 (183)
Q Consensus 41 F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (183)
....+.+|.+|..++..+..++..|+..|..+.. ..-.+.-+..++......++.++
T Consensus 520 l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 576 (880)
T PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-----------------------LKKKLAELEKKLDELEEELAELL 576 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777788887777777777766210 01123334456677777778888
Q ss_pred hhhccCCC
Q psy10138 121 NQLRRETP 128 (183)
Q Consensus 121 ~ql~r~~~ 128 (183)
..+..+.+
T Consensus 577 ~~l~~L~~ 584 (880)
T PRK03918 577 KELEELGF 584 (880)
T ss_pred HHHhhhcc
Confidence 77775543
No 42
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.25 E-value=1.7e+02 Score=21.69 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10138 43 ESYKEYQMLHAKIETVASRFASLQNQLRRETP 74 (183)
Q Consensus 43 ~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~ 74 (183)
++.+.-.+|....+.+..|..-||+.|+...|
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ILdae~P 70 (75)
T PF06667_consen 39 EDEQRLQELYEQAERMEERIETLERILDAEHP 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35667789999999999999999999998544
No 43
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.48 E-value=1.8e+02 Score=21.91 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10138 43 ESYKEYQMLHAKIETVASRFASLQNQLRRETPG 75 (183)
Q Consensus 43 ~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g 75 (183)
++.+.-.+|.+..+.+..|..-||+-|+...|+
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ILDae~P~ 71 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEAILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 355667788899999999999999999996543
No 44
>PTZ00332 paraflagellar rod protein; Provisional
Probab=26.32 E-value=3.1e+02 Score=27.55 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 28 IVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 28 I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
.-+.++|.||.++=..+=.=+++=..+-+.+-+++.+|+.+|+.|
T Consensus 292 ~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l 336 (589)
T PTZ00332 292 LEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRL 336 (589)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999866655445555566778999999999999995
No 45
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=25.90 E-value=1.2e+02 Score=19.25 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQML 51 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~L 51 (183)
.++++|..|.+.+..+-.+|...
T Consensus 42 l~~~~k~~y~~~a~~~~~~y~~~ 64 (66)
T cd00084 42 LSEEEKKKYEEKAEKDKERYEKE 64 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 47799999999999999988764
No 46
>PF00726 IL10: Interleukin 10 This family is a subset of the SCOP family; InterPro: IPR020443 Interleukin-10 (IL-10) is a protein that inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulphide bonds []. IL-10 is highly similar to the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BCRF1 protein which inhibits the synthesis of gamma-interferon and to Equid herpesvirus 2 (Equine herpesvirus 2) protein E7. It is also similar, but to a lesser degree, with human protein mda-7 [], a protein which has antiproliferative properties in human melanoma cells. Mda-7 only contains two of the four cysteines of IL-10.; PDB: 1VLK_A 1Y6N_L 1Y6M_L 2ILK_A 1LK3_A 2H24_A 1J7V_L 1ILK_A 1Y6K_L 1INR_A ....
Probab=25.29 E-value=1.1e+02 Score=25.48 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10138 39 NDFSESYKEYQMLHAKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 39 ~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp 73 (183)
.||-+--...-.....|.++++.|..|...|++|.
T Consensus 89 ~Vfp~~~~~~~~~~~~isslansf~~lk~~L~~C~ 123 (170)
T PF00726_consen 89 RVFPNAQEHDPDIKRKISSLANSFLSLKKDLRQCH 123 (170)
T ss_dssp THHHHHHCHSGGGHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHcccccccCCchhhhHHHHHHHHHHHHHHHHHhH
Confidence 45554434444577899999999999999999985
No 47
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=25.10 E-value=1.8e+02 Score=29.28 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCcc
Q psy10138 21 YEKDYTTIVDLEQRRRYKNDFSESYK-EYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSE 87 (183)
Q Consensus 21 Y~~kYp~I~s~eqR~rYK~~F~~~Y~-EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~ 87 (183)
+-..||.|.-..-=+.|....+.-|. +.-.+-.++-+.+.+|-+++++|.. -.|.+||+
T Consensus 420 ~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqe--------iv~lVG~e 479 (588)
T COG1155 420 NRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQE--------IVQLVGYD 479 (588)
T ss_pred hcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH--------HHHHhCcc
Confidence 45678999888888888887776666 3334445555666677777887777 45666666
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.82 E-value=2.2e+02 Score=19.02 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10138 37 YKNDFSESYKEYQMLHAKIETVASRFASLQNQLR 70 (183)
Q Consensus 37 YK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~ 70 (183)
-|+.|++-=.+|..|..+.+...+.+..|...|.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556666666777777777777776666666553
No 49
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.45 E-value=2.8e+02 Score=23.28 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 31 LEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 31 ~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
..+|..+-+.+...|.-|.+|+..|..-..=..+|...+..
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~ 280 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNK 280 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999988888888887776
No 50
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=24.32 E-value=87 Score=21.69 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhhhccc
Q psy10138 153 FEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181 (183)
Q Consensus 153 f~~kk~Rc~YL~~KLsHIK~lI~~yD~~~ 181 (183)
..+...+.+||+..|..++.....+|..|
T Consensus 42 l~~s~~kI~~L~~~L~~l~~~~~~~~~~n 70 (70)
T PF02185_consen 42 LRESNQKIELLREQLEKLQQRSQNSQSSN 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHH---HCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 45677889999999999988887776543
No 51
>PF12563 Hemolysin_N: Hemolytic toxin N terminal; InterPro: IPR022220 This domain family is found in bacteria, and is approximately 190 amino acids in length. The family is found in association with PF07968 from PFAM, PF00652 from PFAM. This family is a bacterial virulence factor - hemolysin - which forms pores in erythrocytes and causes them to lyse. ; PDB: 1XEZ_A 3O44_I.
Probab=24.22 E-value=68 Score=27.79 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=20.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhhH
Q psy10138 20 KYEKDYTTIVDLEQRRRYKNDFSESY 45 (183)
Q Consensus 20 DY~~kYp~I~s~eqR~rYK~~F~~~Y 45 (183)
.|+.+|..|.+++|+..+++-|...|
T Consensus 78 rylvDFS~iede~~k~~aq~~~r~~~ 103 (187)
T PF12563_consen 78 RYLVDFSQIEDEEEKAQAQAKFRKQY 103 (187)
T ss_dssp EEEEE-TT--SHHHHHHHHHHHHHHH
T ss_pred eEEEEccccCChHHHHHHHHHHHHHh
Confidence 48999999999999999999988765
No 52
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.09 E-value=88 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q psy10138 40 DFSESYKEYQMLHAKIETVASRFA 63 (183)
Q Consensus 40 ~F~~~Y~EY~~Lha~v~~v~~rf~ 63 (183)
-|+|-=++|++|+.||+...+.+.
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLR 85 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998876654
No 53
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=23.96 E-value=1.5e+02 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 47 EYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
+|-.|+++++...+-+++++++|+-
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5778999999999999999999988
No 54
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.92 E-value=2.1e+02 Score=21.14 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10138 44 SYKEYQMLHAKIETVASRFASLQNQLRRETP 74 (183)
Q Consensus 44 ~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~ 74 (183)
+.+.-.+|.+..+.+..|..-||+.|+...|
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ILd~e~P 70 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLERILDAEHP 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4556688999999999999999999999544
No 55
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.60 E-value=2.4e+02 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 38 KNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 38 K~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
-.+|-+.+..|.+|+++.+...++.++|+.++..
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~ 94 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQE 94 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666555543
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.20 E-value=2.9e+02 Score=24.76 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHH
Q psy10138 30 DLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKI 109 (183)
Q Consensus 30 s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (183)
..++......+.+.-=.|=.+|-+++..+-+.-.+|+.+|..
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~-------------------------------------- 82 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE-------------------------------------- 82 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q ss_pred HHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHh-----hcCCCChHHHHHHHHHHHhhHHHHHH
Q psy10138 110 ETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-----NKTDRKFEDCRRRFEYLHNKLSHIKK 172 (183)
Q Consensus 110 ~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~k-----kk~dp~f~~kk~Rc~YL~~KLsHIK~ 172 (183)
+..-..+-..-+...+++|+. ..-.-....-..+.+++.+.|..+++
T Consensus 83 ----------------le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 83 ----------------LEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 57
>smart00721 BAR BAR domain.
Probab=23.06 E-value=3.9e+02 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10138 34 RRRYKNDFSESYKEYQMLHAKIETVA 59 (183)
Q Consensus 34 R~rYK~~F~~~Y~EY~~Lha~v~~v~ 59 (183)
=......|+.....+..|+..+....
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~ 54 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYL 54 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566666666666666665555
No 58
>KOG3251|consensus
Probab=22.16 E-value=5.5e+02 Score=22.67 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccCC
Q psy10138 48 YQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRET 127 (183)
Q Consensus 48 Y~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~~ 127 (183)
|+.-+..++.+..-|..||+.-.. +- -..-.......|.+++++.-.+..+..+++
T Consensus 5 y~~t~~~~~k~q~~l~rlE~~~~~-------~e-----------------~~~v~~~i~~sI~~~~s~~~rl~~~~~~ep 60 (213)
T KOG3251|consen 5 YQSTNRQLDKLQRGLIRLERTIKT-------QE-----------------VSAVENSIQRSIDQYASRCQRLDVLVSKEP 60 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHccccc-------cc-----------------hHHHHHHHHHhHHHHHHHHHHHHhHhhcCC
Confidence 555666666666666666654432 01 112344566778888999999999998888
Q ss_pred CCCHHH
Q psy10138 128 PGSFAH 133 (183)
Q Consensus 128 ~gS~e~ 133 (183)
|++.+-
T Consensus 61 p~~rq~ 66 (213)
T KOG3251|consen 61 PKSRQA 66 (213)
T ss_pred CCcHHH
Confidence 877543
No 59
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.08 E-value=1.7e+02 Score=24.00 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 44 SYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 44 ~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
...+++.+|++|..+.+....|+.+++.
T Consensus 20 ~l~~hq~~~~~I~~L~~e~~~ld~~i~~ 47 (188)
T PF10018_consen 20 ELQEHQENQARIQQLRAEIEELDEQIRD 47 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666555544
No 60
>KOG4593|consensus
Probab=21.53 E-value=4.6e+02 Score=27.06 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhc
Q psy10138 45 YKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLR 124 (183)
Q Consensus 45 Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~ 124 (183)
-+||..-|++++..+...+.++..|..+ .+|+.|.-.++ --...+ +-.+++.+.+..|+.
T Consensus 192 eke~~~~~~ql~~~~q~~~~~~~~l~e~----~~~~qq~a~~~----------~ql~~~------~ele~i~~~~~dqlq 251 (716)
T KOG4593|consen 192 EKELDRQHKQLQEENQKIQELQASLEER----ADHEQQNAELE----------QQLSLS------EELEAINKNMKDQLQ 251 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHH----------HHHHhh------hHHHHHHHHHHHHHH
Confidence 3455555666666666666666666653 34555543333 001111 123444445555554
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh----hcCCCChHHHHHHHHHHHhhHHHHHHHHhhh
Q psy10138 125 RETPGSFAHKQIQDTIVREYHE----NKTDRKFEDCRRRFEYLHNKLSHIKKLVFIY 177 (183)
Q Consensus 125 r~~~gS~e~~~i~~~I~rEY~k----kk~dp~f~~kk~Rc~YL~~KLsHIK~lI~~y 177 (183)
++..--.++.+. ..|-.. .-+.+-.++ --+-|.+||.|+-.++..+
T Consensus 252 el~~l~~a~~q~----~ee~~~~re~~~tv~~Lqe---E~e~Lqskl~~~~~l~~~~ 301 (716)
T KOG4593|consen 252 ELEELERALSQL----REELATLRENRETVGLLQE---ELEGLQSKLGRLEKLQSTL 301 (716)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 322211222222 222221 223333333 4456889999999888765
No 61
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.29 E-value=2.2e+02 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhhhcccC
Q psy10138 153 FEDCRRRFEYLHNKLSHIKKLVFIYDSNNL 182 (183)
Q Consensus 153 f~~kk~Rc~YL~~KLsHIK~lI~~yD~~~~ 182 (183)
..+-..+-.=|+||-..|...+..|..+.+
T Consensus 139 le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 139 LEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667777888877777777776654
No 62
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.26 E-value=1.5e+02 Score=19.11 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhhHHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQM 50 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~ 50 (183)
.|+++|..|......+-.+|..
T Consensus 42 ls~~eK~~y~~~a~~~~~~y~~ 63 (66)
T cd01390 42 LSEEEKKKYEEKAEKDKERYEK 63 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998888874
No 63
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=20.86 E-value=1.6e+02 Score=19.23 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQMLHA 53 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~Lha 53 (183)
.|+++|..|.+.+..+-.+|..-..
T Consensus 42 l~~~eK~~y~~~a~~~~~~y~~~~~ 66 (69)
T PF00505_consen 42 LSEEEKAPYKEEAEEEKERYEKEMP 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998888876543
No 64
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=20.68 E-value=1.6e+02 Score=21.45 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10138 45 YKEYQMLHAKIETVASRFASLQNQLR 70 (183)
Q Consensus 45 Y~EY~~Lha~v~~v~~rf~~L~~~L~ 70 (183)
-.||.+|.++|+.+...+...-..|.
T Consensus 35 seeY~eL~~ri~~lr~~ld~~~~~~d 60 (71)
T PF08663_consen 35 SEEYQELEDRIEELRAELDDTLDEFD 60 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35777777777777766655554443
No 65
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.67 E-value=2.7e+02 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10138 32 EQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQN 67 (183)
Q Consensus 32 eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~ 67 (183)
.||.|+++--.+-=+|-+.++.+|..+.+.+..|.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999987776666666666666666666655554
Done!