Query psy10138
Match_columns 183
No_of_seqs 107 out of 180
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 18:49:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xaw_A Occludin; coiled-coil, 100.0 6E-43 2E-47 279.0 13.1 116 8-181 21-139 (140)
2 3lay_A Zinc resistance-associa 82.6 14 0.00047 29.7 10.2 63 29-124 68-130 (175)
3 2nyt_A Probable C->U-editing e 64.1 18 0.00061 29.2 6.5 21 152-172 170-190 (190)
4 3tul_A Cell invasion protein S 58.3 20 0.00068 29.2 5.7 30 46-75 69-98 (158)
5 2v4h_A NF-kappa-B essential mo 55.4 33 0.0011 26.4 6.3 40 33-72 70-109 (110)
6 3u0c_A Invasin IPAB, 62 kDa an 52.8 43 0.0015 28.0 7.0 24 48-71 119-142 (201)
7 2lw1_A ABC transporter ATP-bin 50.0 61 0.0021 22.6 6.6 25 47-71 23-47 (89)
8 1fxk_A Prefoldin; archaeal pro 49.9 29 0.00098 24.1 4.9 31 41-71 3-33 (107)
9 1aq5_A Matrilin-1, CMP, cartil 48.4 26 0.00089 23.3 4.1 29 41-69 17-46 (47)
10 2d9d_A BAG family molecular ch 47.8 36 0.0012 25.4 5.2 54 107-160 10-68 (89)
11 3sja_C Golgi to ER traffic pro 47.5 28 0.00095 24.5 4.4 31 42-72 28-58 (65)
12 3twe_A Alpha4H; unknown functi 46.6 26 0.00089 20.9 3.5 22 50-71 5-26 (27)
13 2yy0_A C-MYC-binding protein; 42.9 57 0.0019 21.5 5.2 29 43-71 23-51 (53)
14 2zqm_A Prefoldin beta subunit 42.8 49 0.0017 23.2 5.2 31 41-71 8-38 (117)
15 3viq_B Mating-type switching p 40.9 58 0.002 23.8 5.4 22 50-71 5-26 (85)
16 2pih_A Protein YMCA; regulate 40.0 1.2E+02 0.0042 23.0 7.6 39 132-170 67-108 (151)
17 2pnv_A Small conductance calci 36.9 43 0.0015 21.7 3.7 25 49-73 19-43 (43)
18 1hjb_A Ccaat/enhancer binding 36.0 46 0.0016 24.1 4.2 31 45-75 49-79 (87)
19 2d1l_A Metastasis suppressor p 33.5 2.2E+02 0.0074 24.0 8.9 37 35-71 119-156 (253)
20 3jsv_C NF-kappa-B essential mo 32.4 43 0.0015 25.1 3.6 42 32-73 47-88 (94)
21 3sjb_C Golgi to ER traffic pro 30.4 65 0.0022 24.0 4.3 30 42-71 45-74 (93)
22 3d5a_X RF1, peptide chain rele 29.2 1.7E+02 0.0059 26.0 7.5 19 53-71 3-21 (354)
23 3qh9_A Liprin-beta-2; coiled-c 28.7 1.5E+02 0.0052 21.6 5.9 30 108-140 48-77 (81)
24 1hwt_C Protein (heme activator 27.2 33 0.0011 22.5 2.0 21 53-73 58-78 (81)
25 3p6a_A RHO guanine nucleotide 26.3 2.7E+02 0.0091 22.7 10.3 108 40-174 118-233 (377)
26 3ljm_A Coil Ser L9C; de novo d 25.3 63 0.0022 19.7 2.8 27 47-73 2-28 (31)
27 2pz1_A RHO guanine nucleotide 23.7 3.4E+02 0.012 23.1 9.2 114 37-178 202-323 (466)
28 4fdi_A N-acetylgalactosamine-6 23.2 60 0.002 28.1 3.4 17 86-102 464-480 (502)
29 2f23_A Anti-cleavage anti-GREA 22.7 1E+02 0.0036 23.4 4.3 26 46-71 46-71 (156)
30 2wuj_A Septum site-determining 22.0 60 0.0021 21.3 2.5 22 47-68 35-56 (57)
31 2ql2_B Neurod1, neurogenic dif 21.4 73 0.0025 21.2 2.9 43 53-123 12-57 (60)
32 3vlc_E Golgi to ER traffic pro 21.3 54 0.0019 24.5 2.4 30 42-71 52-81 (94)
33 1cii_A Colicin IA; bacteriocin 20.5 3E+02 0.01 26.3 7.7 45 26-71 330-374 (602)
34 3mq7_A Bone marrow stromal ant 20.4 1.1E+02 0.0038 23.8 4.1 28 45-72 70-97 (121)
35 1gu4_A CAAT/enhancer binding p 20.4 68 0.0023 22.7 2.6 27 47-73 51-77 (78)
No 1
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=100.00 E-value=6e-43 Score=279.00 Aligned_cols=116 Identities=25% Similarity=0.408 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCcc
Q psy10138 8 TSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSE 87 (183)
Q Consensus 8 ~~~~~~~~~~~pDY~~kYp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~ 87 (183)
+++-.|.+.++|||+++||||+|++||++||++|+++|.||++||++|++|+++|++|+++|+++
T Consensus 21 ~t~~~~~~~~~pDy~~~Yp~I~S~eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l--------------- 85 (140)
T 1xaw_A 21 TTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDY--------------- 85 (140)
T ss_dssp -------------CTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------------
T ss_pred ccCCCCCCCCCCcHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 34455669999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHH
Q psy10138 88 LFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE---NKTDRKFEDCRRRFEYLH 164 (183)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~k---kk~dp~f~~kk~Rc~YL~ 164 (183)
++||.+|+.| ++||++ +|+||+|+++|+||+|||
T Consensus 86 ---------------------------------------~~~s~e~~~i----~~EY~r~k~~K~dp~y~ekK~Rc~yL~ 122 (140)
T 1xaw_A 86 ---------------------------------------REESEEYMAA----ADEYNRLKQVKGSADYKSKKNHCKQLK 122 (140)
T ss_dssp ---------------------------------------CTTSHHHHHH----HHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CCCCHHHHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 4578999875 899999 588999999999999999
Q ss_pred hhHHHHHHHHhhhhccc
Q psy10138 165 NKLSHIKKLVFIYDSNN 181 (183)
Q Consensus 165 ~KLsHIK~lI~~yD~~~ 181 (183)
+||+|||++|.+||+++
T Consensus 123 ~KLsHIK~lI~~YD~~~ 139 (140)
T 1xaw_A 123 SKLSHIKKMVGDYDRQK 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccC
Confidence 99999999999999864
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.64 E-value=14 Score=29.75 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHH
Q psy10138 29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK 108 (183)
Q Consensus 29 ~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~ 108 (183)
-++||+..+++-+++-+.+-..|..++.+ +-.+|.+++..-.| + .+|
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~a---kr~EL~aL~~a~~~---------------D---------------eak 114 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLIS---KRYEYNALLTASSP---------------D---------------TAK 114 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTSSSC---------------C---------------HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCC---------------C---------------HHH
Confidence 57899999999999999998888766554 44667776665221 1 367
Q ss_pred HHHHHHHHHhhhhhhc
Q psy10138 109 IETVASRFASLQNQLR 124 (183)
Q Consensus 109 ~~~~~~~~a~~~~ql~ 124 (183)
|+.++.-++.++.++.
T Consensus 115 I~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 115 INAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887664
No 3
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=64.06 E-value=18 Score=29.20 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHH
Q psy10138 152 KFEDCRRRFEYLHNKLSHIKK 172 (183)
Q Consensus 152 ~f~~kk~Rc~YL~~KLsHIK~ 172 (183)
.+.+.+.+.+||+.||.-|.+
T Consensus 170 ~W~~l~~~~~y~~~~L~~il~ 190 (190)
T 2nyt_A 170 PWEDIQENFLYYEEKLADILK 190 (190)
T ss_pred hHHhchHhHHHHHHHHHHHhC
Confidence 467788899999999998863
No 4
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=58.28 E-value=20 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10138 46 KEYQMLHAKIETVASRFASLQNQLRRETPG 75 (183)
Q Consensus 46 ~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g 75 (183)
..|..-...+++...|+.+++..|..|.||
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq~kL~~L~P~ 98 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQNKLQSLDPA 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 356667777777888888888888875443
No 5
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.44 E-value=33 Score=26.37 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 33 QRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 33 qR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
|=.-|+.||...=.-=-.+|.+++.+...+..|..++..|
T Consensus 70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 5667999999998888899999999999999999988764
No 6
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=52.84 E-value=43 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 48 YQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 48 Y~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
|..-.+.+.+...++.++++.|..
T Consensus 119 y~~Ads~~~~lekKvn~aq~kLs~ 142 (201)
T 3u0c_A 119 LKNADSKIKDLENKINQIQTRLSE 142 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555666666666666666666
No 7
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.02 E-value=61 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 47 EYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
|+..|-++|+.+-.+...|+.+|..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788999999999999999999987
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.87 E-value=29 Score=24.12 Aligned_cols=31 Identities=10% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 41 FSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 41 F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
++..-.+|..|++++..+....+.|+.+++.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777766554
No 9
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=48.39 E-value=26 Score=23.32 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=22.9
Q ss_pred HHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10138 41 FSESY-KEYQMLHAKIETVASRFASLQNQL 69 (183)
Q Consensus 41 F~~~Y-~EY~~Lha~v~~v~~rf~~L~~~L 69 (183)
|+..= .+-+.|-.++++|.+|+..||++|
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44443 356789999999999999999876
No 10
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.78 E-value=36 Score=25.40 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHh-----hcCCCChHHHHHHH
Q psy10138 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-----NKTDRKFEDCRRRF 160 (183)
Q Consensus 107 ~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~k-----kk~dp~f~~kk~Rc 160 (183)
-|||.|-.+..++++-+.|...-|.+|......+-..--. .-.+|.+.+.|+|-
T Consensus 10 ~~Ie~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrA 68 (89)
T 2d9d_A 10 LKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRA 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHH
Confidence 5899999999999999998888899997764443333322 34578888888885
No 11
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=47.47 E-value=28 Score=24.47 Aligned_cols=31 Identities=13% Similarity=0.470 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
+|+|.-|-.|.++++.+...+..|...|.+.
T Consensus 28 QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 28 QDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999883
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.56 E-value=26 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy10138 50 MLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 50 ~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
+|+.+++.+..++..|...|++
T Consensus 5 elykeledlqerlrklrkklrs 26 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4566667777777777776664
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.87 E-value=57 Score=21.52 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 43 ESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 43 ~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.-=.|-.+|+++++.+.+++++|.+.|..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456777888888888888888887764
No 14
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.85 E-value=49 Score=23.21 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=18.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 41 FSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 41 F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
++..-.+|..|++++..+..+...|+.+++.
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666655443
No 15
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.87 E-value=58 Score=23.83 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy10138 50 MLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 50 ~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.|+++|..+..+..+|+.++..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555
No 16
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=39.97 E-value=1.2e+02 Score=23.04 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHhhHHHH
Q psy10138 132 AHKQIQDTIVREYHENKTDR---KFEDCRRRFEYLHNKLSHI 170 (183)
Q Consensus 132 e~~~i~~~I~rEY~kkk~dp---~f~~kk~Rc~YL~~KLsHI 170 (183)
.++.+.+.|..-+.+...+| .|.+...++.-|-+.+.-|
T Consensus 67 ~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I~~i 108 (151)
T 2pih_A 67 ALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHT 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666665565 4677777777776666554
No 17
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.85 E-value=43 Score=21.65 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10138 49 QMLHAKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 49 ~~Lha~v~~v~~rf~~L~~~L~~lp 73 (183)
.+|..+|.++-.|+..|...|..||
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~aLp 43 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIHALP 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3566667777777777777666654
No 18
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.95 E-value=46 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10138 45 YKEYQMLHAKIETVASRFASLQNQLRRETPG 75 (183)
Q Consensus 45 Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g 75 (183)
=.|-..|.++|+.+...+..|...|..+|.+
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3566778899999999999999999998764
No 19
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=33.51 E-value=2.2e+02 Score=23.99 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=27.9
Q ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 35 RRYKNDFSESY-KEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 35 ~rYK~~F~~~Y-~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.+|-..++.+| .||+.+.+++..-......|+..++.
T Consensus 119 ~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk 156 (253)
T 2d1l_A 119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKK 156 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 45666666666 47888889998888888888877665
No 20
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.36 E-value=43 Score=25.05 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10138 32 EQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 32 eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp 73 (183)
.|=.-|+.||...=.-=-.+|.+.+.+...+..|..++..|.
T Consensus 47 ~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 47 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355679999999999889999999999999999999888764
No 21
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.39 E-value=65 Score=23.97 Aligned_cols=30 Identities=10% Similarity=0.445 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
+|+|..|-.|.++++.+...+..|...|..
T Consensus 45 QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 45 QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998887
No 22
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=29.17 E-value=1.7e+02 Score=26.02 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy10138 53 AKIETVASRFASLQNQLRR 71 (183)
Q Consensus 53 a~v~~v~~rf~~L~~~L~~ 71 (183)
.+++.+..++.+|+.+|..
T Consensus 3 ~~l~~~~~r~~el~~~~~~ 21 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSD 21 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 5788899999999998876
No 23
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.74 E-value=1.5e+02 Score=21.61 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHH
Q psy10138 108 KIETVASRFASLQNQLRRETPGSFAHKQIQDTI 140 (183)
Q Consensus 108 ~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I 140 (183)
|+-.+-+-+|+|+.||- ..-.+..+++.++
T Consensus 48 KLKsTK~El~~Lq~qLe---~kd~ei~rL~~~l 77 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVA---LKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH---hhHHHHHHHHHHH
Confidence 44446688999998884 1123455555444
No 24
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.25 E-value=33 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy10138 53 AKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 53 a~v~~v~~rf~~L~~~L~~lp 73 (183)
..|+.+.+++.+||.+|..+.
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578888899999999888753
No 25
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=26.31 E-value=2.7e+02 Score=22.75 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=54.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHH-HHH
Q psy10138 40 DFSESYKEYQMLHAKIETVASR-------FASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK-IET 111 (183)
Q Consensus 40 ~F~~~Y~EY~~Lha~v~~v~~r-------f~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 111 (183)
.|..-|.+|-.-|.....+... |.+.-..... .|.|+.+.+...+.| |.-
T Consensus 118 ~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~----------------------~~~~~~l~L~~~Li~PvQR 175 (377)
T 3p6a_A 118 WFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAES----------------------RPRCRRLQLKDMIPTEMQR 175 (377)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHT----------------------SGGGTTCCHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHh----------------------CcccCCCCHHHHHHHHHHH
Confidence 3566788887766665555443 3333333332 245666666665554 344
Q ss_pred HHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhHHHHHHHH
Q psy10138 112 VASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLV 174 (183)
Q Consensus 112 ~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kkk~dp~f~~kk~Rc~YL~~KLsHIK~lI 174 (183)
++-|.-+|+.=+. .+|..++|..+++ .+...+. -....+...|-.--..||..|...|
T Consensus 176 i~rY~LLL~~llk-~t~~~~d~~~l~~-A~~~i~~---v~~~in~~~~~~e~~~~l~~iq~~l 233 (377)
T 3p6a_A 176 LTKYPLLLQSIGQ-NTEEPTEREKVEL-AAECCRE---ILHHVNQAVRDMEDLLRLKDYQRRL 233 (377)
T ss_dssp HHHHHHHHHHHHH-TCCSHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred hhhHHHHHHHHHh-hCCCcccHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555554444 5666677777632 2333333 1112222233333345666666555
No 26
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.29 E-value=63 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10138 47 EYQMLHAKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~L~~lp 73 (183)
|+..|..+-.++.++++-|+..|..+.
T Consensus 2 ewealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888889999998887654
No 27
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=23.66 E-value=3.4e+02 Score=23.08 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHH-H
Q psy10138 37 YKNDFSESYKEYQMLHAKIETVASRF------ASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK-I 109 (183)
Q Consensus 37 YK~~F~~~Y~EY~~Lha~v~~v~~rf------~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 109 (183)
+...| .-|.+|-.-|.....+..++ ...-...... +-|..+.+...+.| +
T Consensus 202 ~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~~----------------------~~~~~l~L~~~Li~Pv 258 (466)
T 2pz1_A 202 HQADF-QIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLL----------------------QKMIDISLDGFLLTPV 258 (466)
T ss_dssp THHHH-TTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------------HTCCSCCHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHHh----------------------hhhccCCHHHHhhhHH
Confidence 45677 88999988777655544332 2222222211 12344445555444 4
Q ss_pred HHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHhhHHHHHHHHhhhh
Q psy10138 110 ETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFE-DCRRRFEYLHNKLSHIKKLVFIYD 178 (183)
Q Consensus 110 ~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kkk~dp~f~-~kk~Rc~YL~~KLsHIK~lI~~yD 178 (183)
.-++-|.-+|..-+...+++..+|..+++. +...++. .... +.+++.+ -..||..|...|..|+
T Consensus 259 QRi~rY~LLL~~llk~t~~~~~d~~~l~~A-l~~i~~v---~~~iNe~~r~~e-~~~~l~~lq~~i~~~~ 323 (466)
T 2pz1_A 259 QKICKYPLQLAELLKYTHPQHRDFKDVEAA-LHAMKNV---AQLINERKRRLE-NIDKIAQWQSSIEDWE 323 (466)
T ss_dssp HHHHHHHHHHHHHHHTSCTTSTTHHHHHHH-HHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHSBTCC
T ss_pred HHhhhHHHHHHHHHhcCCCCCcCHHHHHHH-HHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHhcCCC
Confidence 455666667776666566666778777432 2222221 1112 2233333 3456777777766554
No 28
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=23.23 E-value=60 Score=28.12 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=13.4
Q ss_pred ccccccccccchhhhhh
Q psy10138 86 SELFHAKMEPCCFRFRL 102 (183)
Q Consensus 86 ~~l~~~~~~~~~~~~~~ 102 (183)
...|-|-.+|||++|+.
T Consensus 464 ~~~~~pw~~p~c~~~~~ 480 (502)
T 4fdi_A 464 NWAVMNWAPPGCEKLGK 480 (502)
T ss_dssp CGGGSSSSCTTHHHHTC
T ss_pred CCCCCcccCCCCCCCCC
Confidence 34688888999998874
No 29
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.72 E-value=1e+02 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 46 KEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 46 ~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
.||.+-..+...+.+|+.+|+.+|.+
T Consensus 46 aey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 46 SGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777777888888899999999998
No 30
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.02 E-value=60 Score=21.34 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10138 47 EYQMLHAKIETVASRFASLQNQ 68 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~ 68 (183)
+|..|.+++..+..++..|+.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666554
No 31
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=21.43 E-value=73 Score=21.18 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHHHHHH---HHHHHhhhhhh
Q psy10138 53 AKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETV---ASRFASLQNQL 123 (183)
Q Consensus 53 a~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~ql 123 (183)
..+..|+.-|..|...+-.+|++ --++||||. +.||..|+..|
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~----------------------------~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKT----------------------------QKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSS----------------------------SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCCCCc----------------------------CcCCHHHHHHHHHHHHHHHHHHH
Confidence 45778888998887755332211 135788885 67888888766
No 32
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.33 E-value=54 Score=24.45 Aligned_cols=30 Identities=10% Similarity=0.445 Sum_probs=26.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 42 SESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 42 ~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
+|+|..|-.|.++++.+...+..|...|..
T Consensus 52 QDEFAKWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 52 QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999988888888876
No 33
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.54 E-value=3e+02 Score=26.28 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10138 26 TTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71 (183)
Q Consensus 26 p~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~ 71 (183)
-|+++++ =.--|..|++.-.||-.|.+.|+.+.+++.+++.-+++
T Consensus 330 ~~~~~~~-ve~~Kki~naevae~~~lrQRlddArNEItsaeSaIns 374 (602)
T 1cii_A 330 NPVVTED-VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNS 374 (602)
T ss_dssp CSCCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhh-hhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555432 34567888888899999998899998888888887776
No 34
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.41 E-value=1.1e+02 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10138 45 YKEYQMLHAKIETVASRFASLQNQLRRE 72 (183)
Q Consensus 45 Y~EY~~Lha~v~~v~~rf~~L~~~L~~l 72 (183)
-+..++|+.+|.....+|++..+++.+|
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999885
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.37 E-value=68 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10138 47 EYQMLHAKIETVASRFASLQNQLRRET 73 (183)
Q Consensus 47 EY~~Lha~v~~v~~rf~~L~~~L~~lp 73 (183)
|-..|.++|+.+...+..|...|..+|
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444555555555555555555555443
Done!