Your job contains 1 sequence.
>psy10138
MKRGFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVAS
RFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQ
NQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSN
NLK
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10138
(183 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZLS5 - symbol:ELL "Uncharacterized protein" s... 156 1.6e-11 2
RGD|1311121 - symbol:Ell "elongation factor RNA polymeras... 147 1.1e-10 2
MGI|MGI:109377 - symbol:Ell "elongation factor RNA polyme... 146 1.4e-10 2
UNIPROTKB|B4DNK7 - symbol:ELL2 "cDNA FLJ60736, highly sim... 155 1.5e-10 1
RGD|1309296 - symbol:Ell2 "elongation factor RNA polymera... 147 2.0e-10 1
UNIPROTKB|P55199 - symbol:ELL "RNA polymerase II elongati... 145 2.5e-10 2
UNIPROTKB|E1BIK3 - symbol:ELL2 "Uncharacterized protein" ... 155 3.0e-10 1
MGI|MGI:2183438 - symbol:Ell2 "elongation factor RNA poly... 155 3.6e-10 1
UNIPROTKB|O00472 - symbol:ELL2 "RNA polymerase II elongat... 155 3.6e-10 1
UNIPROTKB|F1RNV6 - symbol:ELL2 "Uncharacterized protein" ... 155 3.6e-10 1
UNIPROTKB|F1LSH1 - symbol:Ell2 "Protein Ell2" species:101... 155 3.6e-10 1
UNIPROTKB|E2QWD2 - symbol:ELL2 "Uncharacterized protein" ... 155 3.6e-10 1
ZFIN|ZDB-GENE-030131-1717 - symbol:ell2 "elongation facto... 154 4.9e-10 1
ZFIN|ZDB-GENE-030131-3946 - symbol:ell "elongation factor... 149 1.6e-09 1
UNIPROTKB|F1NBA3 - symbol:ELL2 "Uncharacterized protein" ... 147 2.2e-09 1
UNIPROTKB|E1BK18 - symbol:ELL "Uncharacterized protein" s... 146 3.1e-09 1
UNIPROTKB|F1PI35 - symbol:ELL "Uncharacterized protein" s... 145 4.0e-09 1
RGD|1309917 - symbol:Ell3 "elongation factor RNA polymera... 136 1.7e-08 1
UNIPROTKB|Q9HB65 - symbol:ELL3 "RNA polymerase II elongat... 134 3.0e-08 1
MGI|MGI:2673679 - symbol:Ell3 "elongation factor RNA poly... 131 6.3e-08 1
ZFIN|ZDB-GENE-061207-5 - symbol:si:ch211-13k12.2 "si:ch21... 133 7.3e-08 1
UNIPROTKB|F1MGG3 - symbol:ELL3 "RNA polymerase II elongat... 126 4.4e-07 1
UNIPROTKB|E2RD67 - symbol:ELL3 "Uncharacterized protein" ... 126 4.5e-07 1
UNIPROTKB|F1SI81 - symbol:ELL3 "Uncharacterized protein" ... 124 1.5e-06 1
ZFIN|ZDB-GENE-050208-54 - symbol:marveld2b "MARVEL domain... 125 1.5e-06 1
UNIPROTKB|E1C9J3 - symbol:OCEL1 "Uncharacterized protein"... 115 3.9e-06 1
UNIPROTKB|F1Q386 - symbol:F1Q386 "Uncharacterized protein... 122 8.1e-06 1
UNIPROTKB|F1RQ60 - symbol:LOC100738782 "Uncharacterized p... 121 1.1e-05 1
FB|FBgn0014037 - symbol:Su(Tpl) "Su(Tpl)" species:7227 "D... 123 1.1e-05 1
ZFIN|ZDB-GENE-070912-433 - symbol:si:dkey-208k22.6 "si:dk... 82 0.00013 2
ZFIN|ZDB-GENE-050411-59 - symbol:marveld2a "MARVEL domain... 109 0.00062 1
>UNIPROTKB|Q5ZLS5 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006368 "transcription elongation from RNA polymerase
II promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
GO:GO:0016607 GO:GO:0006368 GO:GO:0010923 GO:GO:0008023 KO:K15183
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
CTD:8178 OMA:QRQLQAW OrthoDB:EOG48GW2X EMBL:AADN02046999
EMBL:AADN02071769 EMBL:AJ719659 IPI:IPI00576777
RefSeq:NP_001012865.1 UniGene:Gga.29905 SMR:Q5ZLS5
Ensembl:ENSGALT00000005330 GeneID:420124 KEGG:gga:420124
InParanoid:Q5ZLS5 NextBio:20823084 Uniprot:Q5ZLS5
Length = 610
Score = 156 (60.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L ++L++ GS +K I D I++EY + KT+ + + R EYLHN
Sbjct: 534 ARIERITRRFTQLDSKLKQLLQGSEEYKTIHDQILQEYRKIKKTNPNYSQEKNRCEYLHN 593
Query: 166 KLSHIKKLVFIYD 178
KL+HIKKL+ YD
Sbjct: 594 KLAHIKKLIAEYD 606
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L ++L++ GS
Sbjct: 499 MPDYLLKYAAISSSEQRQSYKNDFNAEYNEYRDLHARIERITRRFTQLDSKLKQLLQGSE 558
Query: 78 AHK 80
+K
Sbjct: 559 EYK 561
Score = 34 (17.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 35 RRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
++ + +++ +E + A + R+ + Q+R+ PG+
Sbjct: 128 QKARQSMAQAEEETRSRSAIVIKPGGRYVGKKVQVRKPAPGA 169
>RGD|1311121 [details] [associations]
symbol:Ell "elongation factor RNA polymerase II" species:10116
"Rattus norvegicus" [GO:0001701 "in utero embryonic development"
evidence=ISO] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0019902 "phosphatase binding"
evidence=ISO] InterPro:IPR019464 Pfam:PF10390 RGD:1311121
GO:GO:0016607 GO:GO:0001701 GO:GO:0006368 GO:GO:0010923
GO:GO:0008023 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 OrthoDB:EOG48GW2X IPI:IPI00358239
Ensembl:ENSRNOT00000026846 UCSC:RGD:1311121 Uniprot:D4A753
Length = 604
Score = 147 (56.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L QLR+ + GS ++ + I++EY + KT+ + +RR EYLH
Sbjct: 524 ARIEQITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSREKRRCEYLHR 583
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 584 KLAHIKRLIAEYDQRQLQ 601
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+ + GS
Sbjct: 490 PDYLLKYPAISSSEQRQSYKNDFNAEYSEYRSLHARIEQITRRFTQLDAQLRQLSQGSEE 549
Query: 79 HKAQGRGSEL 88
++ RG L
Sbjct: 550 YETT-RGQIL 558
Score = 35 (17.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 23 KDYTTIVDLEQR-RRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
+D T+ + ++ + +++ +E + A + R+ + Q R+ PG+
Sbjct: 115 QDKVTVCATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYMGKKVQFRKPAPGA 169
>MGI|MGI:109377 [details] [associations]
symbol:Ell "elongation factor RNA polymerase II"
species:10090 "Mus musculus" [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0019902 "phosphatase binding"
evidence=ISO] InterPro:IPR019464 Pfam:PF10390 MGI:MGI:109377
GO:GO:0006355 GO:GO:0016607 GO:GO:0001701 GO:GO:0015030
GO:GO:0006368 EMBL:CH466569 GO:GO:0010923 GO:GO:0008023
GO:GO:0019902 KO:K15183 eggNOG:NOG321810 HOGENOM:HOG000112356
HOVERGEN:HBG005578 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 CTD:8178 OMA:QRQLQAW OrthoDB:EOG48GW2X
ChiTaRS:ELL EMBL:U80227 EMBL:AK159027 EMBL:BC014816 EMBL:BC024894
IPI:IPI00309309 RefSeq:NP_031950.2 UniGene:Mm.271973
ProteinModelPortal:O08856 SMR:O08856 IntAct:O08856 STRING:O08856
PhosphoSite:O08856 PRIDE:O08856 Ensembl:ENSMUST00000093454
GeneID:13716 KEGG:mmu:13716 InParanoid:Q3TXY9 NextBio:284496
Bgee:O08856 CleanEx:MM_ELL Genevestigator:O08856
GermOnline:ENSMUSG00000070002 Uniprot:O08856
Length = 602
Score = 146 (56.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L QLR+ + GS ++ + I++EY + KT+ + +RR EYLH
Sbjct: 522 ARIEQITRRFTQLDAQLRQLSQGSDEYETTRGQILQEYRKIKKTNTNYSCEKRRCEYLHR 581
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 582 KLAHIKRLIAEYDQRQLQ 599
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+ + GS
Sbjct: 488 PDYLLKYPAISSSEQRQSYKNDFNAEYSEYRSLHARIEQITRRFTQLDAQLRQLSQGSDE 547
Query: 79 HKAQGRGSEL 88
++ RG L
Sbjct: 548 YETT-RGQIL 556
Score = 35 (17.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 23 KDYTTIVDLEQR-RRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
+D T+ + ++ + +++ +E + A + R+ + Q R+ PG+
Sbjct: 115 QDKVTVCATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYMGKKVQFRKPAPGA 169
>UNIPROTKB|B4DNK7 [details] [associations]
symbol:ELL2 "cDNA FLJ60736, highly similar to RNA
polymerase II elongation factor ELL2" species:9606 "Homo sapiens"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0003746 "translation elongation
factor activity" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
GO:GO:0003746 GO:GO:0006368 GO:GO:0008023 EMBL:AC008592
UniGene:Hs.192221 UniGene:Hs.708710 HGNC:HGNC:17064
HOVERGEN:HBG005578 ChiTaRS:ELL2 InterPro:IPR010844 Pfam:PF07303
EMBL:AK297956 IPI:IPI00908405 SMR:B4DNK7 STRING:B4DNK7
Ensembl:ENST00000431061 HOGENOM:HOG000070032 Uniprot:B4DNK7
Length = 390
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 275 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 333
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 310 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 369
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 370 KLAHIKRLIGEFD 382
>RGD|1309296 [details] [associations]
symbol:Ell2 "elongation factor RNA polymerase II 2"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] RGD:1309296
GO:GO:0005634 eggNOG:NOG321810 HOGENOM:HOG000112356
OrthoDB:EOG44TP7P InterPro:IPR010844 Pfam:PF07303 UniGene:Rn.105837
EMBL:BC111075 IPI:IPI00960042 PhosphoSite:Q2NL49 UCSC:RGD:1309296
InParanoid:Q2NL49 ArrayExpress:Q2NL49 Genevestigator:Q2NL49
Uniprot:Q2NL49
Length = 87
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 7 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 66
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 67 KLAHIKRLIGEFD 79
>UNIPROTKB|P55199 [details] [associations]
symbol:ELL "RNA polymerase II elongation factor ELL"
species:9606 "Homo sapiens" [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] [GO:0019902 "phosphatase binding" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR019464 Pfam:PF10390 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0016607 GO:GO:0001701 GO:GO:0015030 GO:GO:0006368
Reactome:REACT_1788 GO:GO:0010923 GO:GO:0050434 GO:GO:0008023
Reactome:REACT_1892 GO:GO:0019902 GO:GO:0032786 KO:K15183
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 EMBL:U16282 EMBL:BC049195
IPI:IPI00023467 PIR:I38880 RefSeq:NP_006523.1 UniGene:Hs.515260
PDB:2DOA PDBsum:2DOA ProteinModelPortal:P55199 SMR:P55199
IntAct:P55199 MINT:MINT-1511207 STRING:P55199 PhosphoSite:P55199
DMDM:1706635 PaxDb:P55199 PRIDE:P55199 Ensembl:ENST00000262809
GeneID:8178 KEGG:hsa:8178 UCSC:uc002njg.3 CTD:8178
GeneCards:GC19M018553 H-InvDB:HIX0038310 HGNC:HGNC:23114
HPA:HPA046076 MIM:600284 neXtProt:NX_P55199 PharmGKB:PA134939610
InParanoid:P55199 OMA:QRQLQAW OrthoDB:EOG48GW2X PhylomeDB:P55199
ChiTaRS:ELL EvolutionaryTrace:P55199 GenomeRNAi:8178 NextBio:30861
ArrayExpress:P55199 Bgee:P55199 CleanEx:HS_ELL
Genevestigator:P55199 GermOnline:ENSG00000105656 Uniprot:P55199
Length = 621
Score = 145 (56.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L QLR+ + GS ++ + I++EY + KT+ + + R EYLH+
Sbjct: 541 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 600
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 601 KLAHIKRLIAEYDQRQLQ 618
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
P Y Y I EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+ + GS
Sbjct: 507 PDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEE 566
Query: 79 HKAQGRGSEL 88
++ RG L
Sbjct: 567 YETT-RGQIL 575
Score = 34 (17.0 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 35 RRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
++ + +++ +E + A + R+ + Q R+ PG+
Sbjct: 128 QKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGA 169
>UNIPROTKB|E1BIK3 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 OMA:TIRKTHS
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
EMBL:DAAA02021328 EMBL:DAAA02021329 IPI:IPI00704224
Ensembl:ENSBTAT00000009487 Uniprot:E1BIK3
Length = 575
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 460 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 518
Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 495 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 554
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 555 KLAHIKRLIGEFD 567
>MGI|MGI:2183438 [details] [associations]
symbol:Ell2 "elongation factor RNA polymerase II 2"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISO] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR019464 Pfam:PF10390
MGI:MGI:2183438 GO:GO:0006355 GO:GO:0006368 GO:GO:0008023 KO:K15183
CTD:22936 eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
OMA:TIRKTHS OrthoDB:EOG44TP7P ChiTaRS:ELL2 InterPro:IPR010844
Pfam:PF07303 EMBL:AK145868 EMBL:CT025556 IPI:IPI00123165
RefSeq:NP_620403.2 UniGene:Mm.21288 ProteinModelPortal:Q3UKU1
SMR:Q3UKU1 IntAct:Q3UKU1 STRING:Q3UKU1 PhosphoSite:Q3UKU1
PRIDE:Q3UKU1 DNASU:192657 Ensembl:ENSMUST00000001583 GeneID:192657
KEGG:mmu:192657 GeneTree:ENSGT00550000074378 InParanoid:Q3UKU1
NextBio:371325 Bgee:Q3UKU1 CleanEx:MM_ELL2 Genevestigator:Q3UKU1
Uniprot:Q3UKU1
Length = 639
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 524 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 582
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 559 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 618
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 619 KLAHIKRLIGEFD 631
>UNIPROTKB|O00472 [details] [associations]
symbol:ELL2 "RNA polymerase II elongation factor ELL2"
species:9606 "Homo sapiens" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR019464 Pfam:PF10390 GO:GO:0006355
GO:GO:0006368 GO:GO:0008023 KO:K15183 EMBL:U88629 EMBL:AC008592
EMBL:BC028412 IPI:IPI00011757 RefSeq:NP_036213.2 UniGene:Hs.192221
UniGene:Hs.708710 PDB:2E5N PDBsum:2E5N ProteinModelPortal:O00472
SMR:O00472 IntAct:O00472 STRING:O00472 PhosphoSite:O00472
PaxDb:O00472 PRIDE:O00472 DNASU:22936 Ensembl:ENST00000237853
GeneID:22936 KEGG:hsa:22936 UCSC:uc003klr.4 CTD:22936
GeneCards:GC05M095248 H-InvDB:HIX0005049 HGNC:HGNC:17064
HPA:HPA035758 MIM:601874 neXtProt:NX_O00472 PharmGKB:PA134935340
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InParanoid:O00472 OMA:TIRKTHS OrthoDB:EOG44TP7P PhylomeDB:O00472
ChiTaRS:ELL2 EvolutionaryTrace:O00472 GenomeRNAi:22936
NextBio:43679 ArrayExpress:O00472 Bgee:O00472 CleanEx:HS_ELL2
Genevestigator:O00472 GermOnline:ENSG00000118985 InterPro:IPR010844
Pfam:PF07303 Uniprot:O00472
Length = 640
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 583
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 560 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 619
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 620 KLAHIKRLIGEFD 632
>UNIPROTKB|F1RNV6 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183 CTD:22936
OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 EMBL:CU462919 RefSeq:XP_003123844.2
UniGene:Ssc.29366 Ensembl:ENSSSCT00000015477 GeneID:100523777
KEGG:ssc:100523777 Uniprot:F1RNV6
Length = 640
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 583
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 560 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 619
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 620 KLAHIKRLIGEFD 632
>UNIPROTKB|F1LSH1 [details] [associations]
symbol:Ell2 "Protein Ell2" species:10116 "Rattus
norvegicus" [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 RGD:1309296 GO:GO:0006368 GO:GO:0008023 KO:K15183
CTD:22936 OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 IPI:IPI00768600 RefSeq:XP_001054852.2
RefSeq:XP_226624.5 UniGene:Rn.105837 Ensembl:ENSRNOT00000032974
GeneID:309918 KEGG:rno:309918 NextBio:661475 ArrayExpress:F1LSH1
Uniprot:F1LSH1
Length = 640
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 583
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 560 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 619
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 620 KLAHIKRLIGEFD 632
>UNIPROTKB|E2QWD2 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183 CTD:22936
OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 EMBL:AAEX03002040 EMBL:AAEX03002039
RefSeq:XP_546016.2 Ensembl:ENSCAFT00000012614 GeneID:488899
KEGG:cfa:488899 Uniprot:E2QWD2
Length = 641
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y Y IV EQR+ YK+DF+ Y EY+ LHA++ETVA RF L Q +R +PGS
Sbjct: 526 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 584
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
A++ETVA RF L Q +R +PGS ++ + + +++EY + K + + + + R EYLHN
Sbjct: 561 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 620
Query: 166 KLSHIKKLVFIYD 178
KL+HIK+L+ +D
Sbjct: 621 KLAHIKRLIGEFD 633
>ZFIN|ZDB-GENE-030131-1717 [details] [associations]
symbol:ell2 "elongation factor, RNA polymerase II,
2" species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 ZFIN:ZDB-GENE-030131-1717
GO:GO:0006368 GO:GO:0008023 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 EMBL:BC116571 IPI:IPI00508031
UniGene:Dr.77474 InParanoid:Q1JPW6 ArrayExpress:Q1JPW6
Uniprot:Q1JPW6
Length = 675
Score = 154 (59.3 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
P Y YT ++ ++QR+ YK+DF+ Y EY++LHA++E+V RF L Q RR PG+
Sbjct: 561 PDYISKYTAVISMDQRQHYKDDFNGEYDEYRILHARVESVTRRFTKLDAQCRRLAPGT 618
Score = 145 (56.1 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 29/77 (37%), Positives = 51/77 (66%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK--TDRKFEDCRRRFE 161
I A++E+V RF L Q RR PG+ ++++ + +++EY + K + +E+ ++R E
Sbjct: 592 ILHARVESVTRRFTKLDAQCRRLAPGTKEYQEVHEQVLQEYKKIKQHSPNYYEE-KQRCE 650
Query: 162 YLHNKLSHIKKLVFIYD 178
YLHNKL+HIK+L+ +D
Sbjct: 651 YLHNKLAHIKRLIADFD 667
>ZFIN|ZDB-GENE-030131-3946 [details] [associations]
symbol:ell "elongation factor RNA polymerase II"
species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0003746 "translation elongation
factor activity" evidence=IEA] [GO:0006414 "translational
elongation" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
ZFIN:ZDB-GENE-030131-3946 GO:GO:0001570 GO:GO:0006368 GO:GO:0008023
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
EMBL:AL773593 IPI:IPI00972519 Ensembl:ENSDART00000100642
ArrayExpress:F1QKC9 Bgee:F1QKC9 Uniprot:F1QKC9
Length = 660
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE++ +F L ++L++ G+ +K I + I+ EY + KT+ + + R EYLHN
Sbjct: 580 ARIESITRQFTILDSELKQLQQGTDKYKTIHNQILEEYRKIKKTNPNYSQEKNRCEYLHN 639
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIKKL+ YD L+
Sbjct: 640 KLAHIKKLIAEYDQQQLQ 657
Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 25 YTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHK 80
YT I EQR+ YKNDF+ Y EY+ LHA+IE++ +F L ++L++ G+ +K
Sbjct: 552 YTVISSPEQRQTYKNDFNSEYSEYRGLHARIESITRQFTILDSELKQLQQGTDKYK 607
>UNIPROTKB|F1NBA3 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006368 "transcription elongation from RNA polymerase
II promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
GO:GO:0006368 GO:GO:0008023 OMA:TIRKTHS InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:AADN02058319
EMBL:AADN02058320 EMBL:AADN02058321 EMBL:AADN02058322
EMBL:AADN02058323 EMBL:AADN02058324 EMBL:AADN02058325
IPI:IPI00602590 Ensembl:ENSGALT00000023651 Uniprot:F1NBA3
Length = 577
Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
LP Y K Y IV EQR+ YK+DF+ Y EY+ LHA++E++ +F L Q ++ +PGS
Sbjct: 462 LPDYFKKYIAIVSYEQRQSYKDDFNAEYDEYRNLHARMESITRKFMKLDEQRKQLSPGS 520
Score = 135 (52.6 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 24/73 (32%), Positives = 47/73 (64%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A++E++ +F L Q ++ +PGS ++ + + ++ EY + ++ + + + R EYLHN
Sbjct: 497 ARMESITRKFMKLDEQRKQLSPGSKEYQMLHEEVLEEYRKIQQSSPNYREEKHRCEYLHN 556
Query: 166 KLSHIKKLVFIYD 178
KLSHIK+L+ +D
Sbjct: 557 KLSHIKRLIGEFD 569
>UNIPROTKB|E1BK18 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0019902 "phosphatase binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0016607 GO:GO:0001701 GO:GO:0006368
GO:GO:0010923 GO:GO:0008023 KO:K15183 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 CTD:8178 OMA:QRQLQAW
EMBL:DAAA02019046 IPI:IPI00923884 RefSeq:NP_001179027.1
UniGene:Bt.3469 PRIDE:E1BK18 Ensembl:ENSBTAT00000004667
GeneID:506578 KEGG:bta:506578 NextBio:20867667 ArrayExpress:E1BK18
Uniprot:E1BK18
Length = 616
Score = 146 (56.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 33/70 (47%), Positives = 41/70 (58%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
P Y Y TI EQR+ YKNDF+ Y EY+ LHA+IE V RF L QLR+ + GS
Sbjct: 502 PDYLLKYATISSSEQRQSYKNDFNAEYSEYRGLHARIERVTRRFTQLDAQLRQLSQGSEE 561
Query: 79 HKAQGRGSEL 88
++ RG L
Sbjct: 562 YETT-RGQIL 570
Score = 146 (56.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE V RF L QLR+ + GS ++ + I++EY + KT+ + + R EYLH+
Sbjct: 536 ARIERVTRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 595
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 596 KLAHIKRLIAEYDQRQLQ 613
>UNIPROTKB|F1PI35 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
CTD:8178 OMA:QRQLQAW EMBL:AAEX03012281 RefSeq:XP_541936.2
Ensembl:ENSCAFT00000023447 GeneID:484820 KEGG:cfa:484820
Uniprot:F1PI35
Length = 613
Score = 145 (56.1 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 19 PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
P Y Y TI EQR+ YKNDF+ Y EY+ LHA+IE + RF L QLR+ + GS
Sbjct: 499 PDYLLKYATISSSEQRQSYKNDFNAEYSEYRDLHARIEQITRRFTQLDAQLRQLSQGSEE 558
Query: 79 HKAQGRGSEL 88
++ RG L
Sbjct: 559 YETT-RGQIL 567
Score = 145 (56.1 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
A+IE + RF L QLR+ + GS ++ + I++EY + KT+ + + R EYLH+
Sbjct: 533 ARIEQITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 592
Query: 166 KLSHIKKLVFIYDSNNLK 183
KL+HIK+L+ YD L+
Sbjct: 593 KLAHIKRLIAEYDQRQLQ 610
>RGD|1309917 [details] [associations]
symbol:Ell3 "elongation factor RNA polymerase II-like 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0010717
"regulation of epithelial to mesenchymal transition" evidence=ISS]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA;ISO] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;ISS]
[GO:0048863 "stem cell differentiation" evidence=ISS] [GO:0050769
"positive regulation of neurogenesis" evidence=ISO] [GO:1901797
"negative regulation of signal transduction by p53 class mediator"
evidence=ISO] [GO:2000179 "positive regulation of neural precursor
cell proliferation" evidence=ISO] InterPro:IPR019464 Pfam:PF10390
RGD:1309917 GO:GO:0005730 GO:GO:0045944 GO:GO:0003746 GO:GO:0006368
GO:GO:0008023 GO:GO:0032786 KO:K15183 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 OMA:AASQRFI CTD:80237
eggNOG:NOG274492 HOGENOM:HOG000231840 HOVERGEN:HBG051462
OrthoDB:EOG43TZVR EMBL:AC097745 EMBL:BC084693 IPI:IPI00370944
RefSeq:NP_001011957.1 UniGene:Rn.162689 ProteinModelPortal:Q5XFX8
Ensembl:ENSRNOT00000036823 GeneID:296102 KEGG:rno:296102
UCSC:RGD:1309917 InParanoid:Q5XFX8 NextBio:640584
Genevestigator:Q5XFX8 Uniprot:Q5XFX8
Length = 387
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +++R G+ HK ++D IV+EY + K + + +RR EY
Sbjct: 306 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYSEEKRRCEY 365
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 366 LHEKLSHIKGLILEFEEKN 384
Score = 123 (48.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y+TI EQ++ Y+ DF Y EY++LHA++ + RF L +++R G+
Sbjct: 274 VPDYLLQYSTIHSAEQQQAYEQDFETDYAEYRILHARVGAASQRFTELGAEIKRLQRGTP 333
Query: 78 AHK 80
HK
Sbjct: 334 EHK 336
>UNIPROTKB|Q9HB65 [details] [associations]
symbol:ELL3 "RNA polymerase II elongation factor ELL3"
species:9606 "Homo sapiens" [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0008023 "transcription elongation factor complex" evidence=NAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007283 "spermatogenesis"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0032786
"positive regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0010717 "regulation of epithelial to
mesenchymal transition" evidence=ISS] [GO:0048863 "stem cell
differentiation" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR019464 Pfam:PF10390 GO:GO:0005730 GO:GO:0045944
GO:GO:0007283 GO:GO:0006368 EMBL:CH471082 GO:GO:0008023
GO:GO:0032786 KO:K15183 InterPro:IPR010844 Pfam:PF07303 OMA:AASQRFI
EMBL:AF276512 EMBL:AK026290 EMBL:AK057528 EMBL:AK126384
EMBL:CR457358 EMBL:AC018512 EMBL:BC006548 EMBL:BC019293
IPI:IPI00034071 RefSeq:NP_079441.1 UniGene:Hs.706346
ProteinModelPortal:Q9HB65 SMR:Q9HB65 IntAct:Q9HB65
MINT:MINT-1398616 STRING:Q9HB65 DMDM:48428154 PRIDE:Q9HB65
DNASU:80237 Ensembl:ENST00000319359 GeneID:80237 KEGG:hsa:80237
UCSC:uc001zsw.1 CTD:80237 GeneCards:GC15M044064 HGNC:HGNC:23113
HPA:HPA028938 MIM:609885 neXtProt:NX_Q9HB65 PharmGKB:PA128394728
eggNOG:NOG274492 HOGENOM:HOG000231840 HOVERGEN:HBG051462
InParanoid:Q9HB65 OrthoDB:EOG43TZVR PhylomeDB:Q9HB65 ChiTaRS:ELL3
GenomeRNAi:80237 NextBio:70685 ArrayExpress:Q9HB65 Bgee:Q9HB65
CleanEx:HS_ELL3 Genevestigator:Q9HB65 GermOnline:ENSG00000128886
Uniprot:Q9HB65
Length = 397
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ T + RF L +++R G+ +K ++D I++EY + K + + +RR EY
Sbjct: 316 ILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEY 375
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 376 LHQKLSHIKGLILEFEEKN 394
Score = 115 (45.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ+ Y+ DF Y EY++LHA++ T + RF L +++R G+
Sbjct: 284 IPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTP 343
Query: 78 AHK 80
+K
Sbjct: 344 EYK 346
>MGI|MGI:2673679 [details] [associations]
symbol:Ell3 "elongation factor RNA polymerase II-like 3"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0050769 "positive
regulation of neurogenesis" evidence=IDA] [GO:1901797 "negative
regulation of signal transduction by p53 class mediator"
evidence=IDA] [GO:2000179 "positive regulation of neural precursor
cell proliferation" evidence=IDA] InterPro:IPR019464 Pfam:PF10390
MGI:MGI:2673679 GO:GO:0005730 GO:GO:0045944 GO:GO:0006368
GO:GO:0008023 GO:GO:0032786 EMBL:AL845466 KO:K15183
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
OMA:AASQRFI CTD:80237 eggNOG:NOG274492 HOGENOM:HOG000231840
HOVERGEN:HBG051462 OrthoDB:EOG43TZVR ChiTaRS:ELL3 EMBL:BC045151
IPI:IPI00118886 RefSeq:NP_666085.2 UniGene:Mm.330522
ProteinModelPortal:Q80VR2 SMR:Q80VR2 PRIDE:Q80VR2
Ensembl:ENSMUST00000028679 Ensembl:ENSMUST00000116432 GeneID:269344
KEGG:mmu:269344 UCSC:uc008lzc.1 InParanoid:A2ARQ1 NextBio:392793
Bgee:Q80VR2 CleanEx:MM_ELL3 Genevestigator:Q80VR2
GermOnline:ENSMUSG00000027246 Uniprot:Q80VR2
Length = 395
Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +++R G+ HK ++D IV+EY + K + + + R EY
Sbjct: 314 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYREEKHRCEY 373
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 374 LHQKLSHIKGLILEFEEKN 392
Score = 116 (45.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ++ Y+ DF Y EY++LHA++ + RF L +++R G+
Sbjct: 282 VPDYLLQYRAIHSTEQQQAYEQDFETDYAEYRILHARVGAASQRFTELGAEIKRLQRGTP 341
Query: 78 AHK 80
HK
Sbjct: 342 EHK 344
>ZFIN|ZDB-GENE-061207-5 [details] [associations]
symbol:si:ch211-13k12.2 "si:ch211-13k12.2"
species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 ZFIN:ZDB-GENE-061207-5
GO:GO:0006368 GO:GO:0008023 KO:K15183 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:BX897658
EMBL:CT025855 IPI:IPI00817171 RefSeq:XP_694180.3 UniGene:Dr.90438
Ensembl:ENSDART00000099511 GeneID:565819 KEGG:dre:565819
NextBio:20887405 Bgee:F1RAF7 Uniprot:F1RAF7
Length = 593
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
LP Y Y TI D EQR+RYK DF Y EY+ LH +I V F L ++++ +PG+
Sbjct: 480 LPDYLLKYNTITDSEQRQRYKEDFCAEYDEYRDLHERIGKVTEIFVQLGSKIKTLSPGTQ 539
Query: 78 AHK 80
+K
Sbjct: 540 EYK 542
Score = 122 (48.0 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 108 KIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCR---RRFEYLH 164
+I V F L ++++ +PG+ +K ++D I+ +Y + K +KF R +R EYLH
Sbjct: 516 RIGKVTEIFVQLGSKIKTLSPGTQEYKVMEDQIMEKYKKYK--KKFPGYREEKKRCEYLH 573
Query: 165 NKLSHIKKLVFIYDSNNL 182
KLSHIK L+ YD L
Sbjct: 574 QKLSHIKGLILDYDQTQL 591
>UNIPROTKB|F1MGG3 [details] [associations]
symbol:ELL3 "RNA polymerase II elongation factor ELL3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0035326 "enhancer binding" evidence=ISS] [GO:0048863 "stem cell
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0010717 "regulation of epithelial to mesenchymal transition"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 GO:GO:0005730 GO:GO:0045944
GO:GO:0006368 GO:GO:0008023 GO:GO:0032786 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:DAAA02052969
EMBL:BC112766 IPI:IPI00685660 UniGene:Bt.45294
Ensembl:ENSBTAT00000022860 OMA:AASQRFI Uniprot:F1MGG3
Length = 395
Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L ++ G+ HK +++ IV+EY + K + + +RR EY
Sbjct: 314 ILHARVAAASQRFIELAAEMNNVQRGTPEHKALEEKIVQEYKKFRKRYPGYREEKRRCEY 373
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 374 LHQKLSHIKGLILEFEEKN 392
Score = 114 (45.2 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ+ Y+ DF Y EY++LHA++ + RF L ++ G+
Sbjct: 282 VPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVAAASQRFIELAAEMNNVQRGTP 341
Query: 78 AHKA 81
HKA
Sbjct: 342 EHKA 345
>UNIPROTKB|E2RD67 [details] [associations]
symbol:ELL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032786
"positive regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] InterPro:IPR019464 Pfam:PF10390 GO:GO:0005730
GO:GO:0045944 GO:GO:0006368 GO:GO:0008023 GO:GO:0032786
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
OMA:AASQRFI EMBL:AAEX03016092 Ensembl:ENSCAFT00000021180
NextBio:20861110 Uniprot:E2RD67
Length = 399
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +++R G+ +K +++ IV+EY + K + + +RR EY
Sbjct: 318 ILHARVGAASQRFIELGAEIKRVQRGTPEYKMLEEKIVQEYKKFRKRYPGYREEKRRCEY 377
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 378 LHQKLSHIKGLILEFEEKN 396
Score = 109 (43.4 bits), Expect = 0.00039, P = 0.00039
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ+ Y+ DF Y EY++LHA++ + RF L +++R G+
Sbjct: 286 VPDYLLQYRAIHSAEQQHAYEQDFETDYTEYRILHARVGAASQRFIELGAEIKRVQRGTP 345
Query: 78 AHK 80
+K
Sbjct: 346 EYK 348
>UNIPROTKB|F1SI81 [details] [associations]
symbol:ELL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] InterPro:IPR019464 Pfam:PF10390 GO:GO:0005730
GO:GO:0045944 GO:GO:0006368 GO:GO:0008023 GO:GO:0032786 KO:K15183
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
OMA:AASQRFI CTD:80237 EMBL:CU062440 RefSeq:XP_001928178.1
UniGene:Ssc.38139 Ensembl:ENSSSCT00000005189 GeneID:100156183
KEGG:ssc:100156183 Uniprot:F1SI81
Length = 397
Score = 124 (48.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
I A++ + RF L +L++ G+ HK +++ I++EY + K + + + R EY
Sbjct: 316 ILHARVGAASQRFIELGAELKKVQRGTSEHKVLEEKIIQEYKKFRKRYPGYREEKSRCEY 375
Query: 163 LHNKLSHIKKLVFIYDSNN 181
LH KLSHIK L+ ++ N
Sbjct: 376 LHQKLSHIKGLILEFEEKN 394
Score = 115 (45.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y I EQ++ Y+ DF Y EY++LHA++ + RF L +L++ G+
Sbjct: 284 VPDYLLQYRAIHSAEQQQAYEQDFEIDYAEYRILHARVGAASQRFIELGAELKKVQRGTS 343
Query: 78 AHK 80
HK
Sbjct: 344 EHK 346
>ZFIN|ZDB-GENE-050208-54 [details] [associations]
symbol:marveld2b "MARVEL domain containing 2b"
species:7955 "Danio rerio" [GO:0016020 "membrane" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR008253 PROSITE:PS51225
ZFIN:ZDB-GENE-050208-54 GO:GO:0016021 InterPro:IPR021128
Pfam:PF01284 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 eggNOG:NOG264085 HOGENOM:HOG000155323
HOVERGEN:HBG079727 OrthoDB:EOG44F697 EMBL:BX510923 IPI:IPI00618962
RefSeq:NP_001119878.1 UniGene:Dr.90900 Ensembl:ENSDART00000088175
Ensembl:ENSDART00000137178 GeneID:563122 KEGG:dre:563122 CTD:563122
InParanoid:A2BGQ4 OMA:DAMDIKP NextBio:20884748 Uniprot:A2BGQ4
Length = 572
Score = 125 (49.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 107 AKIETVASRFASLQNQLRR--ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLH 164
A+++ + +F + N +R + P S ++ +IV+EY+ K D +++ R R EYL
Sbjct: 489 AEVQVLTQKFEEMDNLMRNLPQRPSSQMEQERISSIVQEYNRKKADPTYQEKRERCEYLK 548
Query: 165 NKLSHIKKLVFIYD 178
NKL+HIK+ + YD
Sbjct: 549 NKLAHIKQKIQEYD 562
>UNIPROTKB|E1C9J3 [details] [associations]
symbol:OCEL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005923 "tight junction" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0033010 "paranodal
junction" evidence=IEA] [GO:0043220 "Schmidt-Lanterman incisure"
evidence=IEA] [GO:0045216 "cell-cell junction organization"
evidence=IEA] GO:GO:0005923 GO:GO:0045216 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:AADN02070646
IPI:IPI00577938 Ensembl:ENSGALT00000003722 OMA:FERKKRD
Uniprot:E1C9J3
Length = 172
Score = 115 (45.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 106 AAKIETVASRFASLQNQLRR--ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYL 163
+ ++ V +F L+ +R+ PGS ++ +++EY + K D F + + R EYL
Sbjct: 87 SVEVHAVLKKFNELEALMRQLPHHPGSIYEQERISKVLQEYEKKKNDPAFLEKKERCEYL 146
Query: 164 HNKLSHIKKLVFIYD 178
NKLSHIK+ + YD
Sbjct: 147 KNKLSHIKQRIQDYD 161
>UNIPROTKB|F1Q386 [details] [associations]
symbol:F1Q386 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:AAEX03027018
Ensembl:ENSCAFT00000030264 Uniprot:F1Q386
Length = 610
Score = 122 (48.0 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
+P Y Y TIV EQR+RY+ DF Y +YQ L+ K+ +++S F L Q +R P S
Sbjct: 495 VPGYLATYVTIVSPEQRQRYEQDFRAEYDDYQALYNKMLSLSSIFIDLDTQRKRFPPESK 554
Query: 78 AHKAQGRGSELFHAKME 94
++ L + KM+
Sbjct: 555 EYQEINETISLEYQKMK 571
>UNIPROTKB|F1RQ60 [details] [associations]
symbol:LOC100738782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:FP104548
Ensembl:ENSSSCT00000013912 OMA:KKVRISH Uniprot:F1RQ60
Length = 565
Score = 121 (47.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 3 RGFAXXXXXXXXXXFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRF 62
+G +P Y +Y TI +QR+RY+ +F E ++EY +L+ K+ T++S F
Sbjct: 437 KGVCASSGKTSSASEIPDYLTNYVTIASSQQRQRYEQEFREDFEEYNVLYNKMLTLSSIF 496
Query: 63 ASLQNQLRRETPGSFAHKAQGRGSELFHAKME 94
L ++ ++ +P S ++ + L + KM+
Sbjct: 497 VYLSSKRKQFSPDSKEYQDINKEITLEYQKMK 528
>FB|FBgn0014037 [details] [associations]
symbol:Su(Tpl) "Su(Tpl)" species:7227 "Drosophila
melanogaster" [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0048190 "wing disc
dorsal/ventral pattern formation" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0043620 "regulation of
DNA-dependent transcription in response to stress" evidence=IMP]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0042795 "snRNA
transcription from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR019464 Pfam:PF10390 GO:GO:0048190 GO:GO:0003682
GO:GO:0006368 GO:GO:0005700 GO:GO:0043620 GO:GO:0008023
InterPro:IPR010844 Pfam:PF07303 GO:GO:0042795 FlyBase:FBgn0014037
EMBL:AF416770 ProteinModelPortal:Q95VE6 MINT:MINT-1329941
STRING:Q95VE6 PRIDE:Q95VE6 InParanoid:Q95VE6 ArrayExpress:Q95VE6
Bgee:Q95VE6 Uniprot:Q95VE6
Length = 1060
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 108 KIETVASRFASLQNQL---RRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLH 164
++E V +RF L +L RR G + I+ IV EY DR + + RF+YLH
Sbjct: 863 RVEDVRNRFQDLSERLESARRCDNGYGDYDHIKRQIVCEYERINNDRTIGEDKERFDYLH 922
Query: 165 NKLSHIKKLVFIYD 178
KL+HIK+LV YD
Sbjct: 923 AKLAHIKQLVMDYD 936
>ZFIN|ZDB-GENE-070912-433 [details] [associations]
symbol:si:dkey-208k22.6 "si:dkey-208k22.6"
species:7955 "Danio rerio" [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR008253 PROSITE:PS51225 ZFIN:ZDB-GENE-070912-433
GO:GO:0016021 InterPro:IPR021128 Pfam:PF01284 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 HOGENOM:HOG000155323
HOVERGEN:HBG079727 EMBL:CR384062 IPI:IPI00506019 RefSeq:XP_691534.1
Ensembl:ENSDART00000088584 GeneID:563081 KEGG:dre:563081
eggNOG:NOG274415 OMA:SIHPAEY OrthoDB:EOG49P9ZX NextBio:20884727
Uniprot:B0UXT0
Length = 526
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 YTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQL 69
Y I LE R +YK F++ Y+EY+ LH +I +F L +
Sbjct: 415 YPEIHSLEDREQYKAVFNDQYQEYKELHREITATLMKFQELDTMM 459
Score = 75 (31.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 118 SLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIK 171
++ +QL + K+I D ++ Y + + D F + + R EYL KLSHIK
Sbjct: 457 TMMSQLINNKRSAEDSKRINDLLIT-YEQKRNDPYFLEKKERCEYLKAKLSHIK 509
>ZFIN|ZDB-GENE-050411-59 [details] [associations]
symbol:marveld2a "MARVEL domain containing 2a"
species:7955 "Danio rerio" [GO:0016020 "membrane" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR008253 PROSITE:PS51225
ZFIN:ZDB-GENE-050411-59 GO:GO:0016021 InterPro:IPR021128
Pfam:PF01284 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 EMBL:CR394525 IPI:IPI00772550
RefSeq:XP_687068.1 UniGene:Dr.42828 Ensembl:ENSDART00000006772
Ensembl:ENSDART00000132526 GeneID:558720 KEGG:dre:558720 CTD:558720
NextBio:20882598 Uniprot:F1QIE2
Length = 545
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 108 KIETVASRFASLQNQLRR--ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHN 165
+++ V +F + ++ + P S+ + + I+++Y + K D F + + R EYL N
Sbjct: 461 EVQAVLKKFDEMDVMMQNLPQNPTSYTERDRINKILQDYQKKKMDPSFLEKKERCEYLKN 520
Query: 166 KLSHIKKLVFIYD 178
KLSHIK+ + YD
Sbjct: 521 KLSHIKQRIHEYD 533
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 183 173 0.00097 108 3 11 22 0.49 31
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 554 (59 KB)
Total size of DFA: 140 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.73u 0.12s 20.85t Elapsed: 00:00:01
Total cpu time: 20.73u 0.12s 20.85t Elapsed: 00:00:01
Start: Thu Aug 15 16:01:42 2013 End: Thu Aug 15 16:01:43 2013