RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10138
(183 letters)
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP:
h.4.17.1 PDB: 1wpa_A 3g7c_A
Length = 140
Score = 68.8 bits (168), Expect = 2e-15
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 6 ATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65
T+ S + ++Y I +QR+ YK +F +EY+ L + ++ + + L
Sbjct: 19 DYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRL 78
Query: 66 QNQLRRETPGSFAHKA 81
+L S + A
Sbjct: 79 DKELDDYREESEEYMA 94
Score = 64.9 bits (158), Expect = 4e-14
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNK 166
+ ++ + + L +L S + D + K ++ + + L +K
Sbjct: 66 SVLDEINKELSRLDKELDDYREESEEYMAAAD-EYNRLKQVKGSADYKSKKNHCKQLKSK 124
Query: 167 LSHIKKLVFIYDSN 180
LSHIKK+V YD
Sbjct: 125 LSHIKKMVGDYDRQ 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.016
Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 47/174 (27%)
Query: 18 LPKYEKDYT-TIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETP-- 74
+ K K+ T +I + + K + EY LH I V P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLE-----NEYA-LHRSI--VDHYNIPKTFDSDDLIPPY 468
Query: 75 --GSFA-----HKAQGRGSELFHAKMEPCCFRFR---LSIAAAKIETVASRFASLQNQLR 124
F H E FR L RF L+ ++R
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTL--------FRMVFLDF----------RF--LEQKIR 508
Query: 125 RETPGSFAHKQIQDTI--VREY--HENKTDRKFEDCRRRFEYLHNKLSHIKKLV 174
++ A I +T+ ++ Y + D K+E R L + L+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE--RLVNAILDFLPKIEENLI 560
Score = 29.8 bits (66), Expect = 0.58
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 15 STFLPKYEKDY--TTIV----DLEQRRRYKNDFSESYKEYQMLHAKIE---TVASRFASL 65
+P Y Y + I ++E R F + +++ L KI T + S+
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 66 QNQLRR-ETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASL-QNQL 123
N L++ + + + L +A ++ F I I S++ L + L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILD-----FLPKIEENLIC---SKYTDLLRIAL 572
Query: 124 RRETPGSF--AHKQIQ 137
E F AHKQ+Q
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
Score = 27.1 bits (59), Expect = 4.6
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 30 DLEQRRRYKNDFSESYKEYQMLHAKIET---------VASRFASL-QNQLRRETPGSF-- 77
L+Q + YK ++ +Y+ L I + S++ L + L E F
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 78 AHKAQGR 84
AHK R
Sbjct: 583 AHKQVQR 589
Score = 26.4 bits (57), Expect = 7.1
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 99 RFRLSIAAAKIETVASRFASLQNQLRRETP---GSFAHKQIQDTIVREYHENKTDRKFED 155
+K E + +F ++ LR +Q Q +++ + + DR + D
Sbjct: 65 LRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 156 ---------CRRR-FEYLHNKLSHIK--KLVFIY 177
R + + L L ++ K V I
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.0
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 119 LQNQLRRETPGS---FAHKQIQDTI 140
LQ L+ S A I+ T+
Sbjct: 25 LQASLKLYADDSAPALA---IKATM 46
Score = 27.2 bits (59), Expect = 2.5
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 65 LQNQLRRETPGS---FAHKAQ 82
LQ L+ S A KA
Sbjct: 25 LQASLKLYADDSAPALAIKAT 45
>4av5_A FIMH; cell adhesion, bacterial adhesin type 1 fimbriae, urinary
TR infection, variable immunoglobulin fold; HET: FYZ;
1.40A {Escherichia coli} PDB: 2vco_A* 1uwf_A* 4auy_A*
4av0_A* 4auu_A* 4avh_A* 4avi_A* 4avj_A* 4avk_A* 1tr7_B*
4av4_A*
Length = 158
Score = 26.2 bits (57), Expect = 4.6
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 7 TTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEY 48
++N P +VDL + ND+ E+ +Y
Sbjct: 14 GGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDY 55
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate
binding protein, transport protein; 1.71A {Escherichia
coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Length = 321
Score = 26.7 bits (59), Expect = 4.8
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 17 FLPKYEKDYTTIVDLE---QRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRET 73
F + I L + + K++ + ++ AK + ++ L +
Sbjct: 255 FRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKL---AKTTAIQAQLDDLDRLNNALS 311
Query: 74 PGSFAHKA 81
S KA
Sbjct: 312 AMSSVSKA 319
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 25.6 bits (57), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 32 EQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLR 70
+ R K++ SE + Q L A+I+ V + A+LQN +
Sbjct: 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67
>3hl6_A Pathogenicity island protein; unknown functio; 2.50A
{Staphylococcus aureus subsp}
Length = 225
Score = 26.2 bits (57), Expect = 7.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 55 IETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFR 99
IET+ + F + L R G L +K++PCCF+
Sbjct: 3 IETIVNEFETRAGTLLRYYTGL-----------LERSKVQPCCFK 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 25.6 bits (57), Expect = 7.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 32 EQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLR 70
E + K++ SE + Q L ++++ S ASL+N L
Sbjct: 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE 69
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 26.0 bits (58), Expect = 9.4
Identities = 8/19 (42%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 164 HNKLSHIKKLVFIYDSNNL 182
KL LV I D N L
Sbjct: 170 IYKLD---NLVAILDINRL 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.373
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,611,343
Number of extensions: 137015
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 19
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)