RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10138
         (183 letters)



>d1uwfa1 b.2.3.2 (A:1-158) Mannose-specific adhesin FimH
          {Escherichia coli [TaxId: 562]}
          Length = 158

 Score = 27.5 bits (61), Expect = 0.65
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 7  TTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEY 48
             ++N      P        +VDL  +    ND+ E+  +Y
Sbjct: 14 GGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDY 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,742
Number of extensions: 26817
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 7
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)