BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10139
         (106 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3UKU1|ELL2_MOUSE RNA polymerase II elongation factor ELL2 OS=Mus musculus GN=Ell2
           PE=2 SV=2
          Length = 639

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 7/104 (6%)

Query: 4   DRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWND 61
           DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ +
Sbjct: 208 DRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKE 267

Query: 62  VQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
           +Q DWP YS+ D+  L    SR+L   QN S + S +P  S +D
Sbjct: 268 LQRDWPGYSETDRQTLDLVLSRKLNPSQNASTSRSESPLCSSKD 311


>sp|O00472|ELL2_HUMAN RNA polymerase II elongation factor ELL2 OS=Homo sapiens GN=ELL2
           PE=1 SV=2
          Length = 640

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 4   DRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWND 61
           DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A   ++D +Y L+ +V+ +
Sbjct: 208 DRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFKE 267

Query: 62  VQDDWPFYSQQDKNMLKS 79
           +Q DWP YS+ D+  L+S
Sbjct: 268 LQRDWPGYSEIDRRSLES 285


>sp|P55199|ELL_HUMAN RNA polymerase II elongation factor ELL OS=Homo sapiens GN=ELL PE=1
           SV=1
          Length = 621

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVW 59
            +DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  ++
Sbjct: 207 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMY 266

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
            DVQ DWP YS+ D+ +LK R L++   +  S
Sbjct: 267 KDVQKDWPGYSEGDQQLLK-RVLVRKLCQPQS 297


>sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus musculus GN=Ell PE=2
           SV=2
          Length = 602

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
            +DR++HLLA+RPY+K EL   L +DG+   D++ + ++L  +A    +D T  LQ  ++
Sbjct: 204 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQVASVNPKDGTCTLQDCMY 263

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFSENHSIT 93
             +Q DWP YS+ D+ +LK R L++   +  + T
Sbjct: 264 KSLQKDWPGYSEGDRQLLK-RMLMRKLCQPQNAT 296


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,358,239
Number of Sequences: 539616
Number of extensions: 1373155
Number of successful extensions: 3194
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3181
Number of HSP's gapped (non-prelim): 10
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)