Query psy10139
Match_columns 106
No_of_seqs 105 out of 113
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2doa_A RNA polymerase II elong 100.0 1.8E-41 6.2E-46 238.0 8.7 89 2-91 13-103 (104)
2 2e5n_A RNA polymerase II elong 100.0 2.9E-39 1E-43 225.5 8.4 79 2-80 14-94 (100)
3 3dfg_A Xcrecx, regulatory prot 90.0 0.59 2E-05 33.1 5.4 41 2-45 19-59 (162)
4 3d5l_A Regulatory protein RECX 87.7 1 3.6E-05 33.3 5.5 41 2-45 63-103 (221)
5 3c1d_A Protein ORAA, regulator 84.6 1.6 5.6E-05 30.5 5.0 41 2-45 7-57 (159)
6 3e3v_A Regulatory protein RECX 84.0 0.98 3.3E-05 32.5 3.6 42 2-46 20-61 (177)
7 1bby_A RAP30; average structur 77.2 1.7 5.9E-05 27.8 2.6 24 35-58 37-65 (69)
8 1nha_A TFIIF-alpha, transcript 75.5 3 0.0001 27.7 3.6 44 4-47 22-68 (82)
9 3pqk_A Biofilm growth-associat 71.6 15 0.0005 22.9 6.1 54 2-61 24-86 (102)
10 1i27_A Transcription factor II 70.8 2.3 7.8E-05 27.7 2.0 44 4-47 13-59 (73)
11 2gmg_A Hypothetical protein PF 70.7 3 0.0001 28.7 2.7 65 2-68 12-77 (105)
12 3jth_A Transcription activator 62.9 21 0.00073 21.8 5.5 53 3-61 25-86 (98)
13 1y0u_A Arsenical resistance op 56.1 32 0.0011 21.1 5.9 48 2-57 32-85 (96)
14 3f6o_A Probable transcriptiona 50.4 16 0.00053 23.6 3.3 56 2-63 19-83 (118)
15 1r1u_A CZRA, repressor protein 42.2 61 0.0021 20.2 5.8 54 2-61 27-89 (106)
16 2jsc_A Transcriptional regulat 42.2 66 0.0023 20.6 5.6 38 2-45 22-59 (118)
17 2kko_A Possible transcriptiona 42.1 55 0.0019 20.7 5.0 55 2-62 26-89 (108)
18 3rf0_A Exopolyphosphatase; str 40.3 13 0.00043 27.0 1.8 42 37-78 56-97 (209)
19 1whz_A Hypothetical protein; a 38.3 18 0.00063 21.7 2.1 18 13-30 3-20 (70)
20 2c35_A Human RPB4, DNA-directe 38.3 39 0.0013 23.8 4.1 46 3-49 104-149 (152)
21 2heo_A Z-DNA binding protein 1 38.0 62 0.0021 19.1 5.2 47 2-54 11-65 (67)
22 1u2w_A CADC repressor, cadmium 37.2 82 0.0028 20.3 5.4 36 3-44 44-80 (122)
23 1owf_B IHF-beta, integration H 34.8 53 0.0018 20.6 4.0 31 15-45 1-34 (94)
24 2qen_A Walker-type ATPase; unk 32.9 1.3E+02 0.0045 21.3 6.3 56 4-62 285-347 (350)
25 2y75_A HTH-type transcriptiona 31.7 75 0.0026 20.4 4.4 47 5-57 13-71 (129)
26 2fu4_A Ferric uptake regulatio 31.0 84 0.0029 18.5 5.7 43 3-46 19-64 (83)
27 3f6v_A Possible transcriptiona 29.4 58 0.002 22.2 3.7 56 2-63 59-123 (151)
28 3cuo_A Uncharacterized HTH-typ 29.4 91 0.0031 18.4 5.0 37 3-45 26-63 (99)
29 2oqg_A Possible transcriptiona 28.8 88 0.003 19.1 4.2 56 2-63 22-86 (114)
30 3h0g_D DNA-directed RNA polyme 26.3 86 0.0029 21.7 4.1 43 3-48 87-131 (135)
31 1qzm_A ATP-dependent protease 26.3 38 0.0013 22.3 2.2 16 67-82 1-16 (94)
32 1r1t_A Transcriptional repress 25.4 1.4E+02 0.0048 19.3 5.9 52 3-60 48-108 (122)
33 1zl8_A LIN-7; heterodimer, alp 25.2 55 0.0019 20.0 2.6 25 18-42 13-38 (53)
34 2htj_A P fimbrial regulatory p 25.2 1.1E+02 0.0038 18.0 4.6 38 2-45 1-39 (81)
35 1d8j_A General transcription f 24.5 65 0.0022 21.0 3.0 45 12-57 29-77 (81)
36 1g6u_A Domain swapped dimer; d 24.3 1E+02 0.0035 18.0 3.5 27 17-44 6-32 (48)
37 1f32_A Major pepsin inhibitor 23.0 66 0.0022 23.3 3.0 54 29-99 96-149 (149)
38 4esb_A Transcriptional regulat 21.8 89 0.003 20.3 3.3 44 3-46 11-54 (115)
39 4esf_A PADR-like transcription 20.5 1.2E+02 0.0041 19.8 3.8 41 5-45 15-55 (117)
No 1
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=100.00 E-value=1.8e-41 Score=237.98 Aligned_cols=89 Identities=39% Similarity=0.722 Sum_probs=86.0
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--CCCeEEechhhhhhccCCCCCCCHHHHHHHHH
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKS 79 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~kr 79 (106)
+|+||||||||+||++|||++||++||++++|+++|++||+|||++ ++|+|+|+++||+|||.||||||++||++++|
T Consensus 13 lReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~~~~y~Lk~~~y~eVq~dWp~Yte~erq~v~r 92 (104)
T 2doa_A 13 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKR 92 (104)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSSCEEECCSSGGGGCCSCCTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCeeeehHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999 79999999999999999999999999999988
Q ss_pred HHhhhhcCCCCC
Q psy10139 80 RELLQNFSENHS 91 (106)
Q Consensus 80 rk~~q~~~pP~s 91 (106)
++ +++++||+|
T Consensus 93 ~l-~~~l~~p~s 103 (104)
T 2doa_A 93 VL-VRKLSGPSS 103 (104)
T ss_dssp HH-HHHSSCSSC
T ss_pred HH-HHhcCCCCC
Confidence 77 888999875
No 2
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=225.47 Aligned_cols=79 Identities=46% Similarity=0.807 Sum_probs=77.0
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--CCCeEEechhhhhhccCCCCCCCHHHHHHHHH
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKS 79 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~kr 79 (106)
+|+||||||||+||++|||++||++||++++|++.|++||+|||++ ++|+|+||++||+|||.||||||++|||+++|
T Consensus 14 lReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~~~~y~Lk~~~~~eVq~dWp~Yte~erq~v~r 93 (100)
T 2e5n_A 14 YRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLES 93 (100)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETTTTEEEECSTHHHHSCTTCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCcCCeeehhHHHHHHhccCCCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999 68999999999999999999999999999987
Q ss_pred H
Q psy10139 80 R 80 (106)
Q Consensus 80 r 80 (106)
+
T Consensus 94 ~ 94 (100)
T 2e5n_A 94 V 94 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=90.04 E-value=0.59 Score=33.13 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=35.4
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
.+...+++|+-++++..||..+|.+-|..+ +.++.||+...
T Consensus 19 a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~---e~Ie~vl~~l~ 59 (162)
T 3dfg_A 19 PVQRALGLLVHREHSKKELNRKLQARGIEP---EAAQAAVERLA 59 (162)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHTTCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhHHHHHHHHHhcCCCH---HHHHHHHHHHH
Confidence 467899999999999999999999999976 57777777663
No 4
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=87.71 E-value=1 Score=33.34 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=34.8
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
.+.+.+++|+-++++..||..+|.+-|..+ +.++.||+...
T Consensus 63 a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~---e~i~~vl~~L~ 103 (221)
T 3d5l_A 63 AYSRMLDYLSYQMRTESDIVKKLKEIDTPE---EFVEPILKKLR 103 (221)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHTTCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHhcCCCH---HHHHHHHHHHH
Confidence 467889999999999999999999999876 57777776554
No 5
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.63 E-value=1.6 Score=30.55 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=32.6
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhc-----C-----CChHhHhHHHHHHHHhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRD-----G-----IRDRDRNQMMAILNGIA 45 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kd-----g-----~~~~dk~~l~~iL~eVA 45 (106)
.+.+.+++|+-++++..||..+|.+- | ..+ +.++.||+...
T Consensus 7 a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~---~~i~~vl~~l~ 57 (159)
T 3c1d_A 7 LLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATA---EDYERVIAWCH 57 (159)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCH---HHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCH---HHHHHHHHHHH
Confidence 46789999999999999999999984 6 655 57777776554
No 6
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=84.00 E-value=0.98 Score=32.47 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=35.4
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF 46 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~ 46 (106)
.+.+.+++|+-++++..||..+|.+-|..+ +.++.||+....
T Consensus 20 a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~---~~ie~vl~~L~~ 61 (177)
T 3e3v_A 20 GYNAALNYLSYQLRTRKEVEDKLRSLDIHE---DYISEIINKLID 61 (177)
T ss_dssp HHHHHHHHHHSSCCCHHHHHTTSGGGTCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHcCCCH---HHHHHHHHHHHH
Confidence 357889999999999999999999999976 577778766543
No 7
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=77.15 E-value=1.7 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcc-----CCCeEEechhh
Q psy10139 35 NQMMAILNGIAFA-----RDNTYHLQRHV 58 (106)
Q Consensus 35 ~~l~~iL~eVA~~-----~~~~Y~Lk~~~ 58 (106)
.-|..||++||.+ -.|.|+||+++
T Consensus 37 ~yLKeiL~~Ia~~~k~g~~~~~weLKpEy 65 (69)
T 1bby_A 37 VYLKEILKEIGVQNVKGIHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHHCCCBCCTTCCCBBCCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCeeeCcHHH
Confidence 7899999999997 24899999873
No 8
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=75.45 E-value=3 Score=27.68 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcC---CChHhHhHHHHHHHHhhcc
Q psy10139 4 DRIIHLLAVRPYKKPELYAALTRDG---IRDRDRNQMMAILNGIAFA 47 (106)
Q Consensus 4 ~RIIHLLAlkPy~k~EL~~rL~kdg---~~~~dk~~l~~iL~eVA~~ 47 (106)
|.|-+.|--+|++-.||+.+...-- .++++.+.|..||..+.-.
T Consensus 22 e~VRryL~rkPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p~ 68 (82)
T 1nha_A 22 DAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPE 68 (82)
T ss_dssp HHHHHHHHHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHhCCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHH
Confidence 6788999999999999999987654 5688899999999988765
No 9
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.59 E-value=15 Score=22.87 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHh---hcc---CC---CeEEechhhhhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGI---AFA---RD---NTYHLQRHVWND 61 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eV---A~~---~~---~~Y~Lk~~~~~e 61 (106)
.|-+|+.+|+=.|.+..||...| |+++ ..+...|... +-+ ++ -.|.|.+..+.+
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l---~is~---~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~ 86 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQI---GIGQ---PTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQ 86 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHH---TCCT---THHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHH
Confidence 36789999999999999999998 7766 4555555444 322 33 357777654443
No 10
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=70.82 E-value=2.3 Score=27.71 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhc---CCChHhHhHHHHHHHHhhcc
Q psy10139 4 DRIIHLLAVRPYKKPELYAALTRD---GIRDRDRNQMMAILNGIAFA 47 (106)
Q Consensus 4 ~RIIHLLAlkPy~k~EL~~rL~kd---g~~~~dk~~l~~iL~eVA~~ 47 (106)
|.|-+.|--+|++-.||+.+...- ..++++.+.|..||..+.-.
T Consensus 13 e~VrryL~rkPmTt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki~p~ 59 (73)
T 1i27_A 13 DAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPE 59 (73)
T ss_dssp HHHHHHHHHSCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHH
Confidence 678899999999999999987653 35778899999999988865
No 11
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.73 E-value=3 Score=28.74 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=48.9
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc-CCCeEEechhhhhhccCCCCC
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA-RDNTYHLQRHVWNDVQDDWPF 68 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~-~~~~Y~Lk~~~~~evq~dWp~ 68 (106)
+|+|||=||-=.|++-.||...|.-+|.+++|. +-.-|+-||.- +..-|.|.-.-|+--++.+-|
T Consensus 12 ~Re~Ii~lL~~~plta~ei~~~l~i~~~~~ke~--Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 12 RREKIIELLLEGDYSPSELARILDMRGKGSKKV--ILEDLKVISKIAKREGMVLLIKPAQCRKCGFVF 77 (105)
T ss_dssp HHHHHHHHTTTSCBCTTHHHHSSCCCSSCCHHH--HHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCCCChHHH--HHHHHHHHHHHHhcCCcEEEEECcChhhCcCee
Confidence 699999999999999999999988887776533 66667788864 332357776666666666665
No 12
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=62.93 E-value=21 Score=21.83 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=36.4
Q ss_pred hHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc---c---CC---CeEEechhhhhh
Q psy10139 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF---A---RD---NTYHLQRHVWND 61 (106)
Q Consensus 3 r~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~---~---~~---~~Y~Lk~~~~~e 61 (106)
|-+|+.+|+-.|.+..||...| |++. ..+...|+.... + ++ -.|.|.+..+.+
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l---~is~---~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~ 86 (98)
T 3jth_A 25 RLQILCMLHNQELSVGELCAKL---QLSQ---SALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKA 86 (98)
T ss_dssp HHHHHHHTTTSCEEHHHHHHHH---TCCH---HHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHH
Confidence 6789999988899999999998 7876 456555555433 2 22 357776654443
No 13
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=56.06 E-value=32 Score=21.07 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=34.8
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc------CCCeEEechh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA------RDNTYHLQRH 57 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~------~~~~Y~Lk~~ 57 (106)
.|.+|+.+| -.|++..||...| |++. ..+...|+..... + |.|.|.+.
T Consensus 32 ~r~~Il~~L-~~~~~~~eLa~~l---~is~---~tv~~~L~~L~~~Glv~~~~-g~y~l~~~ 85 (96)
T 1y0u_A 32 VRRKILRML-DKGRSEEEIMQTL---SLSK---KQLDYHLKVLEAGFCIERVG-ERWVVTDA 85 (96)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHH---TCCH---HHHHHHHHHHHHTTSEEEET-TEEEECTT
T ss_pred HHHHHHHHH-cCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCEEEEC-CEEEECCC
Confidence 366788888 7899999999988 7765 5666666554432 5 78888764
No 14
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=50.43 E-value=16 Score=23.62 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=38.4
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHH---HHhhcc---CC---CeEEechhhhhhcc
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAIL---NGIAFA---RD---NTYHLQRHVWNDVQ 63 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL---~eVA~~---~~---~~Y~Lk~~~~~evq 63 (106)
.|.+|+.+|+=.|++-.||...| |++. ..+...| .+-+-+ ++ -.|.|.+..+.++.
T Consensus 19 ~R~~Il~~L~~~~~~~~eLa~~l---~is~---~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~ 83 (118)
T 3f6o_A 19 TRRAVLGRLSRGPATVSELAKPF---DMAL---PSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVE 83 (118)
T ss_dssp HHHHHHHHHHTCCEEHHHHHTTC---CSCH---HHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHh---CcCH---HHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHH
Confidence 47889999998899999998776 7776 4444444 443333 22 36888877766653
No 15
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=42.24 E-value=61 Score=20.20 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=35.5
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc---c---CCC---eEEechhhhhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF---A---RDN---TYHLQRHVWND 61 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~---~---~~~---~Y~Lk~~~~~e 61 (106)
.|-+|+.+|+-.|++-.||...| |++. ..+...|+..-. . ++| .|.|.+..+.+
T Consensus 27 ~r~~IL~~L~~~~~~~~ela~~l---~is~---stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~ 89 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQL---NLSQ---SNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVAT 89 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH---TCCH---HHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHH
Confidence 36789999998888999999988 6765 455555554432 2 333 46666554443
No 16
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.17 E-value=66 Score=20.60 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.7
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
.|-+|+.+|+-.|.+-.||...| |++. ..+...|+..-
T Consensus 22 ~r~~IL~~L~~~~~~~~eLa~~l---gis~---stvs~~L~~L~ 59 (118)
T 2jsc_A 22 TRCRILVALLDGVCYPGQLAAHL---GLTR---SNVSNHLSCLR 59 (118)
T ss_dssp HHHHHHHHHHTTCCSTTTHHHHH---SSCH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CcCH---HHHHHHHHHHH
Confidence 36789999998899999999887 6765 56666555543
No 17
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=42.06 E-value=55 Score=20.65 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=35.8
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc---c---CCC---eEEechhhhhhc
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF---A---RDN---TYHLQRHVWNDV 62 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~---~---~~~---~Y~Lk~~~~~ev 62 (106)
.|.+|+-+|+-.|.+-.||...| |++. ..+...|+.... + ++| .|.|.+....++
T Consensus 26 ~r~~IL~~L~~~~~s~~eLa~~l---gis~---stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 26 RRLQILDLLAQGERAVEAIATAT---GMNL---TTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp TTHHHHHHHTTCCEEHHHHHHHH---TCCH---HHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 46789999988888889999887 6765 455555444332 2 333 466766554443
No 18
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=40.27 E-value=13 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHhhccCCCeEEechhhhhhccCCCCCCCHHHHHHHH
Q psy10139 37 MMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLK 78 (106)
Q Consensus 37 l~~iL~eVA~~~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~k 78 (106)
.-..|.+||.+=+-.+.=+-.+|-=-+.|+||||..|+..+-
T Consensus 56 ~Aa~LHdIG~~I~~~~~hkHs~Yii~n~~l~Gfs~~e~~~lA 97 (209)
T 3rf0_A 56 WAAMLHEVGLSINHSGMHRHSAYILQNTNLPGFNQEQQTLLA 97 (209)
T ss_dssp HHHHHTTGGGGTCSTTHHHHHHHHHHHSCCTTCCHHHHHHHH
T ss_pred HHHHHHHcccccCcccchHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 345588888763333444677777778999999999999554
No 19
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=38.31 E-value=18 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHhcCCC
Q psy10139 13 RPYKKPELYAALTRDGIR 30 (106)
Q Consensus 13 kPy~k~EL~~rL~kdg~~ 30 (106)
-|++..||++.|.++|-.
T Consensus 3 mp~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 3 MPPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHCCCE
Confidence 389999999999999974
No 20
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=38.27 E-value=39 Score=23.84 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhccCC
Q psy10139 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARD 49 (106)
Q Consensus 3 r~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~~~ 49 (106)
+.+++.|.-|.|-+..|+-.=++.....- ....|+.||+.|++++.
T Consensus 104 ~~E~a~L~NL~P~t~dEar~lipsl~~r~-sdEeLe~ILd~l~k~r~ 149 (152)
T 2c35_A 104 KFELACLANLCPETAEESKALIPSLEGRF-EDEELQQILDDIQTKRS 149 (152)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHCGGGTTTS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCCCCCHHHHHHHHHhhccCC-CHHHHHHHHHHHHHHHh
Confidence 45788899999999999998888876432 23689999999987643
No 21
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=37.99 E-value=62 Score=19.07 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=31.8
Q ss_pred hhHHHHHHHhc--CCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc---c---CCCeEEe
Q psy10139 2 LQDRIIHLLAV--RPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF---A---RDNTYHL 54 (106)
Q Consensus 2 lr~RIIHLLAl--kPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~---~---~~~~Y~L 54 (106)
.+++|+.+|+- .|++-.||...| |++. +.+..+|+..-. . +.|-|.|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~l---glsr---~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKC---QVPK---KTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHH---CSCH---HHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHH---CcCH---HHHHHHHHHHHHCCcEecCCCceEee
Confidence 36789999986 678889999886 5653 566666655433 1 4466654
No 22
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=37.22 E-value=82 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred hHHHHHHHh-cCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHh
Q psy10139 3 QDRIIHLLA-VRPYKKPELYAALTRDGIRDRDRNQMMAILNGI 44 (106)
Q Consensus 3 r~RIIHLLA-lkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eV 44 (106)
|-+|+.+|+ -.|.+..||...| |+++ ..+...|...
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l---~is~---stvs~~L~~L 80 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL---GVTI---ANASHHLRTL 80 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH---TCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH---CcCH---HHHHHHHHHH
Confidence 568999988 6888899999988 7776 4555555543
No 23
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=34.80 E-value=53 Score=20.60 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred CCcHHHHHHHHhc--CCChHhH-hHHHHHHHHhh
Q psy10139 15 YKKPELYAALTRD--GIRDRDR-NQMMAILNGIA 45 (106)
Q Consensus 15 y~k~EL~~rL~kd--g~~~~dk-~~l~~iL~eVA 45 (106)
|.+.||+..+.+. |++..|- ..|+.+++.|.
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~ 34 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMA 34 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6788999999875 6765432 23334444444
No 24
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=32.87 E-value=1.3e+02 Score=21.34 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhc--CCChHhHhHHHHHHHHhhc--c---CCCeEEechhhhhhc
Q psy10139 4 DRIIHLLAVRPYKKPELYAALTRD--GIRDRDRNQMMAILNGIAF--A---RDNTYHLQRHVWNDV 62 (106)
Q Consensus 4 ~RIIHLLAlkPy~k~EL~~rL~kd--g~~~~dk~~l~~iL~eVA~--~---~~~~Y~Lk~~~~~ev 62 (106)
++|+..+|..+.+.++|...+... |++. +.+...|+.... + .+|.|.+.+.+++++
T Consensus 285 ~~~l~~la~g~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 285 VDILRAIALGYNRWSLIRDYLAVKGTKIPE---PRLYALLENLKKMNWIVEEDNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence 467788888776667777665444 4443 455555554433 2 358899988887754
No 25
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=31.65 E-value=75 Score=20.43 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHhc----CCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--------CCCeEEechh
Q psy10139 5 RIIHLLAV----RPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--------RDNTYHLQRH 57 (106)
Q Consensus 5 RIIHLLAl----kPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--------~~~~Y~Lk~~ 57 (106)
+|+..||. +|.+-.||..++ |++. ..+..+|...... ..|-|.|...
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~---~i~~---~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~ 71 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTN---NLSE---HYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE 71 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHT---TSCH---HHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCceEecCCCCCceEeCCC
Confidence 56677776 467778888775 7775 6788887776642 2478998764
No 26
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.04 E-value=84 Score=18.49 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=29.3
Q ss_pred hHHHHHHHhc---CCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139 3 QDRIIHLLAV---RPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF 46 (106)
Q Consensus 3 r~RIIHLLAl---kPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~ 46 (106)
|..|+.+|+- .|++-.||...|.+.+..- .++.+-..|+....
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i-s~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI-GLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHH
Confidence 5678888875 5788999999998874221 23566666655544
No 27
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=29.44 E-value=58 Score=22.25 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=38.5
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHH---hhcc---CCC---eEEechhhhhhcc
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNG---IAFA---RDN---TYHLQRHVWNDVQ 63 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~e---VA~~---~~~---~Y~Lk~~~~~evq 63 (106)
.|.+|+.+|+=.|++-.||...| |++. ..+...|.. -+-+ ++| .|.|.+.-...+.
T Consensus 59 ~R~~IL~~L~~~~~t~~eLa~~l---gls~---stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~ 123 (151)
T 3f6v_A 59 TRRRLVQLLTSGEQTVNNLAAHF---PASR---SAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLR 123 (151)
T ss_dssp HHHHHHHHGGGCCEEHHHHHTTS---SSCH---HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 47899999998899999998876 6765 455554444 3333 344 6888877655553
No 28
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=29.41 E-value=91 Score=18.41 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=27.0
Q ss_pred hHHHHHHHhcC-CCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 3 QDRIIHLLAVR-PYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 3 r~RIIHLLAlk-Py~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
+-+|+.+|+-. |.+..||...| |++. ..+...|+..-
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l---~is~---~tvs~~l~~L~ 63 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRIT---GLSA---SATSQHLARMR 63 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHH---CCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHH---CcCH---HHHHHHHHHHH
Confidence 56788888877 78889999988 6765 56666655543
No 29
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.85 E-value=88 Score=19.13 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=37.7
Q ss_pred hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc---c---CCC---eEEechhhhhhcc
Q psy10139 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF---A---RDN---TYHLQRHVWNDVQ 63 (106)
Q Consensus 2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~---~---~~~---~Y~Lk~~~~~evq 63 (106)
.|.+|+.+|.-.|.+-.||...| |++. ..+...|+.... + ++| .|.|.+.-...+.
T Consensus 22 ~r~~IL~~L~~~~~~~~ela~~l---~is~---~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~ 86 (114)
T 2oqg_A 22 TRWEILTELGRADQSASSLATRL---PVSR---QAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTA 86 (114)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHS---SSCH---HHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHH
Confidence 35678888887899999999887 6765 566666665533 2 233 3777776655443
No 30
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.34 E-value=86 Score=21.69 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=35.4
Q ss_pred hHHHHHHHhcCCCCcHHHHHHHHhcC--CChHhHhHHHHHHHHhhccC
Q psy10139 3 QDRIIHLLAVRPYKKPELYAALTRDG--IRDRDRNQMMAILNGIAFAR 48 (106)
Q Consensus 3 r~RIIHLLAlkPy~k~EL~~rL~kdg--~~~~dk~~l~~iL~eVA~~~ 48 (106)
+-+|..|.-|.|-+..|+-.=++.-+ +.+ ..|+.||+.|++++
T Consensus 87 ~fEia~L~NL~P~t~dEak~LIpsL~~r~~d---e~L~~IL~~l~~~r 131 (135)
T 3h0g_D 87 KFERAQLGTLCCEDAEEARTLIPSLANKIDD---QNLQGILDELSTLR 131 (135)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHCGGGTTTSCS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHh
Confidence 45788899999999999999888854 444 68999999999764
No 31
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=26.33 E-value=38 Score=22.31 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHh
Q psy10139 67 PFYSQQDKNMLKSREL 82 (106)
Q Consensus 67 p~Yse~er~~~krrk~ 82 (106)
+|||++|+-.+-+|-+
T Consensus 1 sGYt~~EK~~IAk~~L 16 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL 16 (94)
T ss_dssp CCCCHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6999999998888655
No 32
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.41 E-value=1.4e+02 Score=19.28 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHH---HHHhhcc---CCC---eEEechhhhh
Q psy10139 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAI---LNGIAFA---RDN---TYHLQRHVWN 60 (106)
Q Consensus 3 r~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~i---L~eVA~~---~~~---~Y~Lk~~~~~ 60 (106)
|-+|+.+|+=.|++-.||...| |+++ ..+... |.+-+-. ++| .|.|.+..+.
T Consensus 48 rl~IL~~L~~~~~s~~ela~~l---gis~---stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~ 108 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAI---GVSE---SAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIV 108 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHH---TCCH---HHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCH---HHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 5689999987789999999998 7776 445444 4442322 233 4666665443
No 33
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.24 E-value=55 Score=19.95 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCh-HhHhHHHHHHH
Q psy10139 18 PELYAALTRDGIRD-RDRNQMMAILN 42 (106)
Q Consensus 18 ~EL~~rL~kdg~~~-~dk~~l~~iL~ 42 (106)
=||+.+|++.|--+ ..-..|.+||+
T Consensus 13 iELle~lq~sgevp~~KL~aLq~VLq 38 (53)
T 1zl8_A 13 LELMEHVQKTGEVNNAKLASLQQVLQ 38 (53)
T ss_dssp HHHHHHHGGGSSSTHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 38899999998543 33455666654
No 34
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=25.24 E-value=1.1e+02 Score=18.04 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=27.9
Q ss_pred hhHHHHHHHhc-CCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 2 LQDRIIHLLAV-RPYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 2 lr~RIIHLLAl-kPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
+|++|+.+|.- .+.+-.||...| |++. ..+...|+...
T Consensus 1 ~r~~Il~~L~~~~~~s~~eLa~~l---gvs~---~tv~r~L~~L~ 39 (81)
T 2htj_A 1 MKNEILEFLNRHNGGKTAEIAEAL---AVTD---YQARYYLLLLE 39 (81)
T ss_dssp CHHHHHHHHHHSCCCCHHHHHHHH---TSCH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHH---CcCH---HHHHHHHHHHH
Confidence 47889988875 678899999987 6765 56666655544
No 35
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=24.53 E-value=65 Score=21.00 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.1
Q ss_pred cCCCCcHHHHHHHHhcCCChHhHhHH-HHHHHH---hhccCCCeEEechh
Q psy10139 12 VRPYKKPELYAALTRDGIRDRDRNQM-MAILNG---IAFARDNTYHLQRH 57 (106)
Q Consensus 12 lkPy~k~EL~~rL~kdg~~~~dk~~l-~~iL~e---VA~~~~~~Y~Lk~~ 57 (106)
-.|.+-+||+..+...+++.+.+..| ...|.. |.. .||.|..|+-
T Consensus 29 ~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~-~dgkf~fkP~ 77 (81)
T 1d8j_A 29 THPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEV-IDGKYAFKPK 77 (81)
T ss_dssp CSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEE-CSSSEEECCT
T ss_pred CCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEE-eCCceeccCC
Confidence 36889999999999999998888887 555552 222 4888887764
No 36
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.34 E-value=1e+02 Score=18.04 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred cHHHHHHHHhcCCChHhHhHHHHHHHHh
Q psy10139 17 KPELYAALTRDGIRDRDRNQMMAILNGI 44 (106)
Q Consensus 17 k~EL~~rL~kdg~~~~dk~~l~~iL~eV 44 (106)
+||| ..|.++|.++++-..|++-|+..
T Consensus 6 ksel-qalkkegfspeelaaleselqal 32 (48)
T 1g6u_A 6 KSEL-QALKKEGFSPEELAALESELQAL 32 (48)
T ss_dssp HHHH-HHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHcCCCHHHHHHHHHHHHHH
Confidence 4554 46799999998888888877654
No 37
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=23.01 E-value=66 Score=23.32 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=22.0
Q ss_pred CChHhHhHHHHHHHHhhccCCCeEEechhhhhhccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCchh
Q psy10139 29 IRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQ 99 (106)
Q Consensus 29 ~~~~dk~~l~~iL~eVA~~~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~krrk~~q~~~pP~s~p~~~~~~ 99 (106)
+...|..+|..--++|+ .|.|-++.|+.=...++. .| ....+.||..|-||.-|
T Consensus 96 LT~~Eq~EL~~y~~k~~------------a~eer~e~~~~~~~~~k~----~k-~~~~~~pP~kPSFCt~~ 149 (149)
T 1f32_A 96 LTAKDHAEVQTFREKIA------------AFEEQQENQPPSSGMPHG----AV-PAGGLSPPPPPSFCTVQ 149 (149)
T ss_dssp CCHHHHHHHHHHHHHHH------------HHHHC-------------------------CCCCCCGGGCC-
T ss_pred CCHHHHHHHHHHHHHHH------------HHHHHHhccchhhcCCCC----Cc-ccccCCCCCCCCccccC
Confidence 34455666666666665 777778888653322221 12 33444467788899643
No 38
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=21.76 E-value=89 Score=20.30 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF 46 (106)
Q Consensus 3 r~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~ 46 (106)
+=-|+++|+-+|+.--||..+|.+.|.-.-....|-.+|.....
T Consensus 11 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~ 54 (115)
T 4esb_A 11 EGCILYIISQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQK 54 (115)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHH
Confidence 34588999999998899999999866422223577777666543
No 39
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=20.54 E-value=1.2e+02 Score=19.77 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139 5 RIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA 45 (106)
Q Consensus 5 RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA 45 (106)
-|+++|+-+|+.--||..+|.+-|.-.-....|-.+|...-
T Consensus 15 ~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe 55 (117)
T 4esf_A 15 CVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLE 55 (117)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHH
Confidence 47899999999889999999876542222356777766554
Done!