Your job contains 1 sequence.
>psy10139
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWN
DVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10139
(106 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0014037 - symbol:Su(Tpl) "Su(Tpl)" species:7227 "D... 237 1.3e-18 1
UNIPROTKB|F1NBA3 - symbol:ELL2 "Uncharacterized protein" ... 204 1.6e-15 1
MGI|MGI:2183438 - symbol:Ell2 "elongation factor RNA poly... 202 3.2e-15 1
UNIPROTKB|F1LSH1 - symbol:Ell2 "Protein Ell2" species:101... 196 1.4e-14 1
UNIPROTKB|O00472 - symbol:ELL2 "RNA polymerase II elongat... 191 4.9e-14 1
UNIPROTKB|F1RNV6 - symbol:ELL2 "Uncharacterized protein" ... 189 7.9e-14 1
UNIPROTKB|E1BIK3 - symbol:ELL2 "Uncharacterized protein" ... 188 8.5e-14 1
UNIPROTKB|Q5ZLS5 - symbol:ELL "Uncharacterized protein" s... 187 1.2e-13 1
UNIPROTKB|E2QWD2 - symbol:ELL2 "Uncharacterized protein" ... 187 1.3e-13 1
ZFIN|ZDB-GENE-030131-3946 - symbol:ell "elongation factor... 185 2.3e-13 1
ZFIN|ZDB-GENE-030131-1717 - symbol:ell2 "elongation facto... 182 4.9e-13 1
UNIPROTKB|P55199 - symbol:ELL "RNA polymerase II elongati... 178 1.2e-12 1
UNIPROTKB|E1BK18 - symbol:ELL "Uncharacterized protein" s... 177 1.5e-12 1
UNIPROTKB|F1PI35 - symbol:ELL "Uncharacterized protein" s... 176 1.9e-12 1
RGD|1311121 - symbol:Ell "elongation factor RNA polymeras... 175 2.3e-12 1
UNIPROTKB|F1RQ60 - symbol:LOC100738782 "Uncharacterized p... 169 9.1e-12 1
MGI|MGI:109377 - symbol:Ell "elongation factor RNA polyme... 169 1.0e-11 1
RGD|1593468 - symbol:LOC689396 "similar to RNA polymerase... 156 2.5e-10 1
UNIPROTKB|G3X796 - symbol:LOC527529 "Uncharacterized prot... 153 5.8e-10 1
UNIPROTKB|F1Q386 - symbol:F1Q386 "Uncharacterized protein... 146 3.1e-09 1
ZFIN|ZDB-GENE-061207-5 - symbol:si:ch211-13k12.2 "si:ch21... 136 3.5e-08 1
>FB|FBgn0014037 [details] [associations]
symbol:Su(Tpl) "Su(Tpl)" species:7227 "Drosophila
melanogaster" [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0048190 "wing disc
dorsal/ventral pattern formation" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0043620 "regulation of
DNA-dependent transcription in response to stress" evidence=IMP]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0042795 "snRNA
transcription from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR019464 Pfam:PF10390 GO:GO:0048190 GO:GO:0003682
GO:GO:0006368 GO:GO:0005700 GO:GO:0043620 GO:GO:0008023
InterPro:IPR010844 Pfam:PF07303 GO:GO:0042795 FlyBase:FBgn0014037
EMBL:AF416770 ProteinModelPortal:Q95VE6 MINT:MINT-1329941
STRING:Q95VE6 PRIDE:Q95VE6 InParanoid:Q95VE6 ArrayExpress:Q95VE6
Bgee:Q95VE6 Uniprot:Q95VE6
Length = 1060
Score = 237 (88.5 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 41/80 (51%), Positives = 62/80 (77%)
Query: 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
+++R+IHLLA++ +KKPEL+A L +GIRDR+RNQ+ IL I+ NTY+L+R +WND
Sbjct: 379 IRERLIHLLALKAFKKPELFARLKNEGIRDRERNQITNILMDISTMSHNTYNLRRQMWND 438
Query: 62 VQDDWPFYSQQDKNMLKSRE 81
V ++WPF+S+Q+ LK R+
Sbjct: 439 VDENWPFFSEQEVQQLKRRK 458
>UNIPROTKB|F1NBA3 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006368 "transcription elongation from RNA polymerase
II promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
GO:GO:0006368 GO:GO:0008023 OMA:TIRKTHS InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:AADN02058319
EMBL:AADN02058320 EMBL:AADN02058321 EMBL:AADN02058322
EMBL:AADN02058323 EMBL:AADN02058324 EMBL:AADN02058325
IPI:IPI00602590 Ensembl:ENSGALT00000023651 Uniprot:F1NBA3
Length = 577
Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 44/106 (41%), Positives = 69/106 (65%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L RDG+ +DRN + A+L +A +DN+Y L+ +++
Sbjct: 142 RDRVIHLLALKTYKKPELLARLQRDGVNLKDRNSLTAVLQQVANLNPKDNSYTLKDYLYK 201
Query: 61 DVQDDWPFYSQQDKNMLK---SRELLQN---FSENHSITPFYSQQD 100
D+Q DWP Y++ DK L+ SR++ + S +H +P S +D
Sbjct: 202 DIQKDWPGYNEVDKQTLELILSRKVNSSQSTTSTSHLGSPVTSNKD 247
>MGI|MGI:2183438 [details] [associations]
symbol:Ell2 "elongation factor RNA polymerase II 2"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISO] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR019464 Pfam:PF10390
MGI:MGI:2183438 GO:GO:0006355 GO:GO:0006368 GO:GO:0008023 KO:K15183
CTD:22936 eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
OMA:TIRKTHS OrthoDB:EOG44TP7P ChiTaRS:ELL2 InterPro:IPR010844
Pfam:PF07303 EMBL:AK145868 EMBL:CT025556 IPI:IPI00123165
RefSeq:NP_620403.2 UniGene:Mm.21288 ProteinModelPortal:Q3UKU1
SMR:Q3UKU1 IntAct:Q3UKU1 STRING:Q3UKU1 PhosphoSite:Q3UKU1
PRIDE:Q3UKU1 DNASU:192657 Ensembl:ENSMUST00000001583 GeneID:192657
KEGG:mmu:192657 GeneTree:ENSGT00550000074378 InParanoid:Q3UKU1
NextBio:371325 Bgee:Q3UKU1 CleanEx:MM_ELL2 Genevestigator:Q3UKU1
Uniprot:Q3UKU1
Length = 639
Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + AIL +A +D +Y L+ +V+
Sbjct: 207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266
Query: 61 DVQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
++Q DWP YS+ D+ L SR+L QN S + S +P S +D
Sbjct: 267 ELQRDWPGYSETDRQTLDLVLSRKLNPSQNASTSRSESPLCSSKD 311
>UNIPROTKB|F1LSH1 [details] [associations]
symbol:Ell2 "Protein Ell2" species:10116 "Rattus
norvegicus" [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 RGD:1309296 GO:GO:0006368 GO:GO:0008023 KO:K15183
CTD:22936 OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 IPI:IPI00768600 RefSeq:XP_001054852.2
RefSeq:XP_226624.5 UniGene:Rn.105837 Ensembl:ENSRNOT00000032974
GeneID:309918 KEGG:rno:309918 NextBio:661475 ArrayExpress:F1LSH1
Uniprot:F1LSH1
Length = 640
Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + AIL +A +D +Y L+ +V+
Sbjct: 207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266
Query: 61 DVQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
++Q DWP YS+ DK L SR+L QN + +P S +D
Sbjct: 267 ELQRDWPGYSETDKQTLDLVLSRKLNPSQNAGTSRPESPMCSSKD 311
>UNIPROTKB|O00472 [details] [associations]
symbol:ELL2 "RNA polymerase II elongation factor ELL2"
species:9606 "Homo sapiens" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR019464 Pfam:PF10390 GO:GO:0006355
GO:GO:0006368 GO:GO:0008023 KO:K15183 EMBL:U88629 EMBL:AC008592
EMBL:BC028412 IPI:IPI00011757 RefSeq:NP_036213.2 UniGene:Hs.192221
UniGene:Hs.708710 PDB:2E5N PDBsum:2E5N ProteinModelPortal:O00472
SMR:O00472 IntAct:O00472 STRING:O00472 PhosphoSite:O00472
PaxDb:O00472 PRIDE:O00472 DNASU:22936 Ensembl:ENST00000237853
GeneID:22936 KEGG:hsa:22936 UCSC:uc003klr.4 CTD:22936
GeneCards:GC05M095248 H-InvDB:HIX0005049 HGNC:HGNC:17064
HPA:HPA035758 MIM:601874 neXtProt:NX_O00472 PharmGKB:PA134935340
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InParanoid:O00472 OMA:TIRKTHS OrthoDB:EOG44TP7P PhylomeDB:O00472
ChiTaRS:ELL2 EvolutionaryTrace:O00472 GenomeRNAi:22936
NextBio:43679 ArrayExpress:O00472 Bgee:O00472 CleanEx:HS_ELL2
Genevestigator:O00472 GermOnline:ENSG00000118985 InterPro:IPR010844
Pfam:PF07303 Uniprot:O00472
Length = 640
Score = 191 (72.3 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 44/106 (41%), Positives = 70/106 (66%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + AIL +A ++D +Y L+ +V+
Sbjct: 207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFK 266
Query: 61 DVQDDWPFYSQQDKNMLKS---REL--LQNFS-ENHSITPFYSQQD 100
++Q DWP YS+ D+ L+S R+L QN + + S +P S +D
Sbjct: 267 ELQRDWPGYSEIDRRSLESVLSRKLNPSQNAAGTSRSESPVCSSRD 312
>UNIPROTKB|F1RNV6 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183 CTD:22936
OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 EMBL:CU462919 RefSeq:XP_003123844.2
UniGene:Ssc.29366 Ensembl:ENSSSCT00000015477 GeneID:100523777
KEGG:ssc:100523777 Uniprot:F1RNV6
Length = 640
Score = 189 (71.6 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 44/106 (41%), Positives = 69/106 (65%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + AIL +A +D +Y L+ +V+
Sbjct: 207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266
Query: 61 DVQDDWPFYSQQDKNMLKS---REL--LQNF-SENHSITPFYSQQD 100
++Q DWP Y++ D+ L+S R+L QN S + S +P S +D
Sbjct: 267 ELQRDWPGYNEIDRRSLESVLSRKLNSSQNAASTSRSESPVCSSRD 312
>UNIPROTKB|E1BIK3 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 OMA:TIRKTHS
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
EMBL:DAAA02021328 EMBL:DAAA02021329 IPI:IPI00704224
Ensembl:ENSBTAT00000009487 Uniprot:E1BIK3
Length = 575
Score = 188 (71.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 43/106 (40%), Positives = 69/106 (65%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + A+L +A +D +Y L+ +V+
Sbjct: 142 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAVLQQVANLNPKDLSYTLKDYVFK 201
Query: 61 DVQDDWPFYSQQDKNMLKS---REL--LQNF-SENHSITPFYSQQD 100
++Q DWP Y++ D+ L+S R+L QN S + S +P S +D
Sbjct: 202 ELQRDWPGYNEIDRRSLESVLSRKLNPSQNAASTSRSESPVCSSRD 247
>UNIPROTKB|Q5ZLS5 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006368 "transcription elongation from RNA polymerase
II promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
GO:GO:0016607 GO:GO:0006368 GO:GO:0010923 GO:GO:0008023 KO:K15183
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
CTD:8178 OMA:QRQLQAW OrthoDB:EOG48GW2X EMBL:AADN02046999
EMBL:AADN02071769 EMBL:AJ719659 IPI:IPI00576777
RefSeq:NP_001012865.1 UniGene:Gga.29905 SMR:Q5ZLS5
Ensembl:ENSGALT00000005330 GeneID:420124 KEGG:gga:420124
InParanoid:Q5ZLS5 NextBio:20823084 Uniprot:Q5ZLS5
Length = 610
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 37/98 (37%), Positives = 65/98 (66%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWN 60
+DR++HLLA++PYKKPEL L +DG+ +D++ + +L +A A+D+T+ L+ V+
Sbjct: 201 KDRVVHLLALKPYKKPELILRLQKDGLSQQDKDLLDNLLQQVANLSAKDSTFTLKDCVYK 260
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQ 98
+VQ DWP YS+ D+ +LK R L++ + + + F +
Sbjct: 261 EVQKDWPGYSEGDQQLLK-RILVRKLCQPQNSSGFQGE 297
>UNIPROTKB|E2QWD2 [details] [associations]
symbol:ELL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183 CTD:22936
OMA:TIRKTHS InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 EMBL:AAEX03002040 EMBL:AAEX03002039
RefSeq:XP_546016.2 Ensembl:ENSCAFT00000012614 GeneID:488899
KEGG:cfa:488899 Uniprot:E2QWD2
Length = 641
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 41/96 (42%), Positives = 65/96 (67%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL A L +DG+ +D+N + AIL +A +D +Y L+ +V+
Sbjct: 207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266
Query: 61 DVQDDWPFYSQQDKNMLKS---RELLQNFSENHSIT 93
++Q DWP Y++ D+ L+S R+L N S+N + T
Sbjct: 267 ELQRDWPGYNELDRRSLESVLSRKL--NPSQNAAST 300
>ZFIN|ZDB-GENE-030131-3946 [details] [associations]
symbol:ell "elongation factor RNA polymerase II"
species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0003746 "translation elongation
factor activity" evidence=IEA] [GO:0006414 "translational
elongation" evidence=IEA] InterPro:IPR019464 Pfam:PF10390
ZFIN:ZDB-GENE-030131-3946 GO:GO:0001570 GO:GO:0006368 GO:GO:0008023
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
EMBL:AL773593 IPI:IPI00972519 Ensembl:ENSDART00000100642
ArrayExpress:F1QKC9 Bgee:F1QKC9 Uniprot:F1QKC9
Length = 660
Score = 185 (70.2 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 36/95 (37%), Positives = 65/95 (68%)
Query: 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
L++R++HLLA++PY+KPEL LT+DG+ +D+ + ++L +A ++DNT+ L+ ++
Sbjct: 223 LRERLVHLLALKPYRKPELLVRLTKDGLSFQDKETLDSLLQQVANLNSKDNTFTLKDCLF 282
Query: 60 NDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITP 94
+VQ DWP Y++ D+ +LK R L++ + S P
Sbjct: 283 KEVQKDWPGYTEVDQQILK-RILVRKLCKPQSNAP 316
>ZFIN|ZDB-GENE-030131-1717 [details] [associations]
symbol:ell2 "elongation factor, RNA polymerase II,
2" species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 ZFIN:ZDB-GENE-030131-1717
GO:GO:0006368 GO:GO:0008023 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 EMBL:BC116571 IPI:IPI00508031
UniGene:Dr.77474 InParanoid:Q1JPW6 ArrayExpress:Q1JPW6
Uniprot:Q1JPW6
Length = 675
Score = 182 (69.1 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 41/109 (37%), Positives = 68/109 (62%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR+IHLLA+R YKK E+ A L RDG+ +DRN + L+ +A +DN+Y L+ ++
Sbjct: 221 RDRVIHLLALRSYKKLEVLARLQRDGVSQKDRNSLGTTLHQVANLNPKDNSYSLKDFIFR 280
Query: 61 DVQDDWPFYSQQDK---NMLKSRELLQNFSENHSITPFYSQQDKNMLKR 106
+VQ DWP Y++ D+ + + +R+L N S +P +++ + LKR
Sbjct: 281 EVQRDWPGYTEDDRVQVDRILARKLGLNLESVSSNSP--TKEPTSPLKR 327
>UNIPROTKB|P55199 [details] [associations]
symbol:ELL "RNA polymerase II elongation factor ELL"
species:9606 "Homo sapiens" [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] [GO:0019902 "phosphatase binding" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR019464 Pfam:PF10390 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0016607 GO:GO:0001701 GO:GO:0015030 GO:GO:0006368
Reactome:REACT_1788 GO:GO:0010923 GO:GO:0050434 GO:GO:0008023
Reactome:REACT_1892 GO:GO:0019902 GO:GO:0032786 KO:K15183
eggNOG:NOG321810 HOGENOM:HOG000112356 HOVERGEN:HBG005578
InterPro:IPR010844 Pfam:PF07303 EMBL:U16282 EMBL:BC049195
IPI:IPI00023467 PIR:I38880 RefSeq:NP_006523.1 UniGene:Hs.515260
PDB:2DOA PDBsum:2DOA ProteinModelPortal:P55199 SMR:P55199
IntAct:P55199 MINT:MINT-1511207 STRING:P55199 PhosphoSite:P55199
DMDM:1706635 PaxDb:P55199 PRIDE:P55199 Ensembl:ENST00000262809
GeneID:8178 KEGG:hsa:8178 UCSC:uc002njg.3 CTD:8178
GeneCards:GC19M018553 H-InvDB:HIX0038310 HGNC:HGNC:23114
HPA:HPA046076 MIM:600284 neXtProt:NX_P55199 PharmGKB:PA134939610
InParanoid:P55199 OMA:QRQLQAW OrthoDB:EOG48GW2X PhylomeDB:P55199
ChiTaRS:ELL EvolutionaryTrace:P55199 GenomeRNAi:8178 NextBio:30861
ArrayExpress:P55199 Bgee:P55199 CleanEx:HS_ELL
Genevestigator:P55199 GermOnline:ENSG00000105656 Uniprot:P55199
Length = 621
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWN 60
+DR++HLLA+RPY+K EL L +DG+ D++ + +L +A A+D T LQ ++
Sbjct: 208 RDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYK 267
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
DVQ DWP YS+ D+ +LK R L++ + S
Sbjct: 268 DVQKDWPGYSEGDQQLLK-RVLVRKLCQPQS 297
>UNIPROTKB|E1BK18 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0019902 "phosphatase binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0016607 GO:GO:0001701 GO:GO:0006368
GO:GO:0010923 GO:GO:0008023 KO:K15183 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 CTD:8178 OMA:QRQLQAW
EMBL:DAAA02019046 IPI:IPI00923884 RefSeq:NP_001179027.1
UniGene:Bt.3469 PRIDE:E1BK18 Ensembl:ENSBTAT00000004667
GeneID:506578 KEGG:bta:506578 NextBio:20867667 ArrayExpress:E1BK18
Uniprot:E1BK18
Length = 616
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/91 (40%), Positives = 59/91 (64%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
+DR++HLLA+RPY+K EL L +DG+ D++ + ++L +A A+D T L+ V+
Sbjct: 208 RDRVLHLLALRPYRKAELLLRLQKDGLAQADKDALDSLLQQVANVNAKDGTCTLKDCVYK 267
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
DVQ DWP YS+ D+ +LK R L++ + S
Sbjct: 268 DVQKDWPGYSEGDQQLLK-RMLVRKLCQPQS 297
>UNIPROTKB|F1PI35 [details] [associations]
symbol:ELL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 KO:K15183
InterPro:IPR010844 Pfam:PF07303 GeneTree:ENSGT00550000074378
CTD:8178 OMA:QRQLQAW EMBL:AAEX03012281 RefSeq:XP_541936.2
Ensembl:ENSCAFT00000023447 GeneID:484820 KEGG:cfa:484820
Uniprot:F1PI35
Length = 613
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
+DR++HLLA+RPY+K EL L +DG+ D++ + +L +A A+D T L+ V+
Sbjct: 208 RDRVLHLLALRPYRKAELLLRLQKDGLAQADKDALDGLLQQVANVNAKDGTCTLKDCVYK 267
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
DVQ DWP YS+ D+ +LK R L++ + S
Sbjct: 268 DVQKDWPGYSEGDQQLLK-RMLVRKLCQPQS 297
>RGD|1311121 [details] [associations]
symbol:Ell "elongation factor RNA polymerase II" species:10116
"Rattus norvegicus" [GO:0001701 "in utero embryonic development"
evidence=ISO] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0019902 "phosphatase binding"
evidence=ISO] InterPro:IPR019464 Pfam:PF10390 RGD:1311121
GO:GO:0016607 GO:GO:0001701 GO:GO:0006368 GO:GO:0010923
GO:GO:0008023 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 OrthoDB:EOG48GW2X IPI:IPI00358239
Ensembl:ENSRNOT00000026846 UCSC:RGD:1311121 Uniprot:D4A753
Length = 604
Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/93 (38%), Positives = 59/93 (63%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR++HLLA+RPY+K EL L +DG+ D++ + ++L +A +D T LQ ++
Sbjct: 205 RDRVLHLLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQVASVNPKDGTCTLQDCMYK 264
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHSIT 93
+VQ DWP YS+ D+ +LK R L++ + S T
Sbjct: 265 NVQKDWPGYSEGDQQLLK-RVLMRKLCQPQSAT 296
>UNIPROTKB|F1RQ60 [details] [associations]
symbol:LOC100738782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:FP104548
Ensembl:ENSSSCT00000013912 OMA:KKVRISH Uniprot:F1RQ60
Length = 565
Score = 169 (64.5 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
+DR+IHLLA++ YKKPEL L +DGI DRN + IL +A +D +Y L+ +V+
Sbjct: 173 RDRVIHLLALKNYKKPELLLRLQKDGISQNDRNSLGKILEQVANLNTQDYSYTLKDYVFQ 232
Query: 61 DVQDDWPFYSQQDKNMLK 78
++Q DWP YS ++ L+
Sbjct: 233 ELQRDWPGYSDLERQSLE 250
>MGI|MGI:109377 [details] [associations]
symbol:Ell "elongation factor RNA polymerase II"
species:10090 "Mus musculus" [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0019902 "phosphatase binding"
evidence=ISO] InterPro:IPR019464 Pfam:PF10390 MGI:MGI:109377
GO:GO:0006355 GO:GO:0016607 GO:GO:0001701 GO:GO:0015030
GO:GO:0006368 EMBL:CH466569 GO:GO:0010923 GO:GO:0008023
GO:GO:0019902 KO:K15183 eggNOG:NOG321810 HOGENOM:HOG000112356
HOVERGEN:HBG005578 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 CTD:8178 OMA:QRQLQAW OrthoDB:EOG48GW2X
ChiTaRS:ELL EMBL:U80227 EMBL:AK159027 EMBL:BC014816 EMBL:BC024894
IPI:IPI00309309 RefSeq:NP_031950.2 UniGene:Mm.271973
ProteinModelPortal:O08856 SMR:O08856 IntAct:O08856 STRING:O08856
PhosphoSite:O08856 PRIDE:O08856 Ensembl:ENSMUST00000093454
GeneID:13716 KEGG:mmu:13716 InParanoid:Q3TXY9 NextBio:284496
Bgee:O08856 CleanEx:MM_ELL Genevestigator:O08856
GermOnline:ENSMUSG00000070002 Uniprot:O08856
Length = 602
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/93 (36%), Positives = 58/93 (62%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
+DR++HLLA+RPY+K EL L +DG+ D++ + ++L +A +D T LQ ++
Sbjct: 205 RDRVLHLLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQVASVNPKDGTCTLQDCMYK 264
Query: 61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHSIT 93
+Q DWP YS+ D+ +LK R L++ + + T
Sbjct: 265 SLQKDWPGYSEGDRQLLK-RMLMRKLCQPQNAT 296
>RGD|1593468 [details] [associations]
symbol:LOC689396 "similar to RNA polymerase II elongation factor
ELL2" species:10116 "Rattus norvegicus" [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 RGD:1593468 GO:GO:0006368
GO:GO:0008023 InterPro:IPR010844 Pfam:PF07303
GeneTree:ENSGT00550000074378 IPI:IPI00563329
Ensembl:ENSRNOT00000041429 Uniprot:F1LZB9
Length = 596
Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/97 (41%), Positives = 57/97 (58%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNT--YHLQRHVWN 60
+DR+IHLLA++ YKK EL L +DGI+ D N + IL +A T Y L+ ++
Sbjct: 177 RDRVIHLLALKDYKKSELLVQLQKDGIKINDSNFLGKILLQVANLNATTLSYTLKDSIFK 236
Query: 61 DVQDDWPFYSQQDKNMLK---SREL--LQNFSE-NHS 91
+VQ DWP Y+++DK L SR+L N +E HS
Sbjct: 237 EVQRDWPGYNKEDKQSLDLVLSRKLHPFHNATEVTHS 273
>UNIPROTKB|G3X796 [details] [associations]
symbol:LOC527529 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 OMA:KKVRISH
EMBL:DAAA02067969 Ensembl:ENSBTAT00000022530 Uniprot:G3X796
Length = 638
Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 30/78 (38%), Positives = 50/78 (64%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
+DR+IHLLA++ YKK EL L RDG+ + + + + IL +A ++ +Y L+ V+
Sbjct: 214 RDRVIHLLALKDYKKHELLVRLQRDGMTEEEMDSLGKILQEVAHLNTQNRSYSLKNCVFK 273
Query: 61 DVQDDWPFYSQQDKNMLK 78
++Q DWP YS+ D+ L+
Sbjct: 274 ELQKDWPGYSEVDRQTLE 291
>UNIPROTKB|F1Q386 [details] [associations]
symbol:F1Q386 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008023 "transcription elongation factor
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR019464
Pfam:PF10390 GO:GO:0006368 GO:GO:0008023 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:AAEX03027018
Ensembl:ENSCAFT00000030264 Uniprot:F1Q386
Length = 610
Score = 146 (56.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNT--YHLQRHVWN 60
++R+IHLLA++ Y+KPEL L +DG+ + D + + +L +A T Y L+ V+
Sbjct: 207 RERVIHLLALKDYRKPELLIRLQKDGVTENDVSSLGDLLQQVANVNPQTSSYTLKDDVFQ 266
Query: 61 DVQDDWPFYSQQDKNMLK 78
++Q DWP YS+ ++ L+
Sbjct: 267 ELQKDWPGYSELERQSLE 284
>ZFIN|ZDB-GENE-061207-5 [details] [associations]
symbol:si:ch211-13k12.2 "si:ch211-13k12.2"
species:7955 "Danio rerio" [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0008023
"transcription elongation factor complex" evidence=IEA]
InterPro:IPR019464 Pfam:PF10390 ZFIN:ZDB-GENE-061207-5
GO:GO:0006368 GO:GO:0008023 KO:K15183 InterPro:IPR010844
Pfam:PF07303 GeneTree:ENSGT00550000074378 EMBL:BX897658
EMBL:CT025855 IPI:IPI00817171 RefSeq:XP_694180.3 UniGene:Dr.90438
Ensembl:ENSDART00000099511 GeneID:565819 KEGG:dre:565819
NextBio:20887405 Bgee:F1RAF7 Uniprot:F1RAF7
Length = 593
Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/103 (28%), Positives = 62/103 (60%)
Query: 2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVW 59
L++R+IH+LA++PY KPEL L R+ +D+ + +L+ +A +++++ L+ +
Sbjct: 198 LRERVIHILALKPYSKPELLLWLEREKASPKDKADLSPVLDEVAKLNPKEHSFTLKDDFY 257
Query: 60 NDVQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYS 97
V+ DWP Y ++++ +++ +R+L L + S + + F S
Sbjct: 258 RHVRKDWPGYVEEERQLIQRVLARKLQPLSSSSSSSQLKSFQS 300
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 106 106 0.00091 102 3 11 22 0.39 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 543 (58 KB)
Total size of DFA: 123 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.85u 0.17s 12.02t Elapsed: 00:00:01
Total cpu time: 11.85u 0.17s 12.02t Elapsed: 00:00:01
Start: Thu Aug 15 16:01:47 2013 End: Thu Aug 15 16:01:48 2013