RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10139
         (106 letters)



>gnl|CDD|220728 pfam10390, ELL, RNA polymerase II elongation factor ELL.  ELL is a
           family of RNA polymerase II elongation factors. It is
           bound stably to elongation-associated factors 1 and 2,
           EAFs, and together these act as a strong regulator of
           transcription activity. by direct interaction with Pol
           II. ELL binds to pol II on its own but the affinity is
           greatly increased by the cooperation of EAF. Some
           members carry an Occludin domain pfam07303 just
           downstream. There is no S. cerevisiae member.
          Length = 285

 Score =  104 bits (261), Expect = 8e-29
 Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFAR--DNTYHLQRHVW 59
           L++R+IHLLA++PYKKPEL   L +DG+ D+D+N + ++L  +A     DN+Y L+  V+
Sbjct: 199 LRERVIHLLALKPYKKPELLLRLQKDGLADKDKNSLDSLLQQVANLNPKDNSYTLKDCVY 258

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFS 87
            +VQ+DWP YS+ ++ ++K R L +  S
Sbjct: 259 KEVQEDWPGYSEDERQLVKRR-LERKLS 285


>gnl|CDD|173958 cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEVS).
           2-epi-5-epi-valiolone synthases catalyze the cyclization
           of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in
           the biosynthesis of C(7)N-aminocyclitol-containing
           products. The cyclization product, 2-epi-5-epi-valiolone
           ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,
           5-tetrol), is a precursor of the valienamine moiety. The
           valienamine unit is responsible for their biological
           activities as various glycosidic hydrolases inhibitors. 
           Two important microbial secondary metabolites, i.e.,
           validamycin and acarbose, are used in agricultural and
           biomedical applications. Validamycine A is an antifungal
           antibiotic which has a strong trehalase inhibitory
           activity and has been used to control sheath blight
           disease in rice caused by Rhizoctonia solani. Acarbose
           is an alpha-glucosidase inhibitor used for the treatment
           of type II insulin-independent diabetes.  Salbostatin
           produced by Streptomyces albus also belongs to this
           family.  It exhibits strong trehalase inhibitory
           activity.
          Length = 354

 Score = 30.3 bits (69), Expect = 0.13
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 4   DRIIHL-----LAV-RPYKKPELYAALTRDGIRDRDRNQMMAILNGI---AFARDNTY 52
           DRI+ L     L V  P   P+L  A  +D +R RD  Q   +  GI    F  D T 
Sbjct: 291 DRILALMRRLGLPVWHPLLDPDLLWAALKDTVRHRDGLQRAPLPTGIGECTFLNDVTE 348


>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional.
          Length = 252

 Score = 26.2 bits (58), Expect = 3.6
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 54  LQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR 106
           L+ HVW+ +Q         D+++L S   L        ++PF  Q+   +L  
Sbjct: 5   LKTHVWSKLQRQ---QEVGDEDLLLSDPWLDFL----QLSPFLKQKLLALLNC 50


>gnl|CDD|237364 PRK13361, PRK13361, molybdenum cofactor biosynthesis protein A;
           Provisional.
          Length = 329

 Score = 25.7 bits (57), Expect = 5.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 7/32 (21%)

Query: 17  KPELYAALTRDGIRDRDRNQMMAILNGIAFAR 48
           +PEL+AALTR+G  +R       ++ GI  A+
Sbjct: 126 RPELFAALTRNGRLER-------VIAGIDAAK 150


>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This
           family describes a region that is found in proteins
           expressed by a variety of eukaryotic and prokaryotic
           species. These proteins include various enzymes, such as
           senescence marker protein 30 (SMP-30), gluconolactonase
           and luciferin-regenerating enzyme (LRE). SMP-30 is known
           to hydrolyse diisopropyl phosphorofluoridate in the
           liver, and has been noted as having sequence similarity,
           in the region described in this family, with PON1 and
           LRE.
          Length = 245

 Score = 25.7 bits (57), Expect = 5.7
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 24  LTRDGIRDRDRNQMMAILNGIAFARDNT--YH---LQRHVW 59
           L  DG  +R  + +  I NG+A++ D    Y      R +W
Sbjct: 119 LDPDGKVERVLDGI-TISNGLAWSPDGKTLYFADSPTRRIW 158


>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
          Length = 935

 Score = 25.4 bits (55), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 20  LYAALTRDGIRDRDRNQ 36
           +YA   R  IRDR RN 
Sbjct: 135 MYAMAIRQAIRDRRRNP 151


>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
          Length = 323

 Score = 24.9 bits (54), Expect = 9.9
 Identities = 6/22 (27%), Positives = 16/22 (72%)

Query: 49  DNTYHLQRHVWNDVQDDWPFYS 70
           DNT +L++ ++ND  +++ + +
Sbjct: 166 DNTDNLKQCIFNDYHENFSWSA 187


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,450,800
Number of extensions: 459790
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 23
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)