RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10139
         (106 letters)



>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 80.9 bits (200), Expect = 3e-22
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 1  MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHV 58
            +DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  +
Sbjct: 5  PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCM 64

Query: 59 WNDVQDDWPFYSQQDKNMLKSR 80
          + DVQ DWP YS+ D+ +LK  
Sbjct: 65 YKDVQKDWPGYSEGDQQLLKRV 86


>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 26.6 bits (58), Expect = 0.51
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 21 YAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSR 80
            A   DG     RN+ +A++ G   A +    L ++          +   +      S+
Sbjct: 21 ACA-VCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKY------GSKVYIIHRRDAFRASK 73

Query: 81 ELLQNFSENHSITPFYSQQ 99
           + Q    N  I   ++  
Sbjct: 74 IMQQRALSNPKIDVIWNSS 92


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
          (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 24.7 bits (53), Expect = 2.6
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 9  LLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYH 53
           + + PYK+  +Y+    D  + + R++M   +  IA   D  Y 
Sbjct: 42 CVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIA---DTAYR 83


>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId:
           1280]}
          Length = 121

 Score = 23.7 bits (51), Expect = 4.6
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 70  SQQDKNMLKSRELLQNFSENHSITPFYSQQDKN 102
           +  DKN  K        +E   + P  S+  KN
Sbjct: 75  TYYDKNKKKEETKSFPITEKGFVVPDLSEHIKN 107


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 24.3 bits (52), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 9   LLAVRPYKKPELYAALTRDGIRDRDRNQM 37
           L+AV P+K+  +Y     D  + R RN++
Sbjct: 76  LVAVNPFKRIPIYTQEMVDIFKGRRRNEV 104


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
          discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 24.3 bits (52), Expect = 4.8
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 9  LLAVRPYKKPELYAALTRDGIRDRDRNQM 37
          +++  P+K   +Y          R + +M
Sbjct: 37 VISTNPFKNLNIYKESDIKAYNGRYKYEM 65


>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
           (Aleuria aurantia) [TaxId: 5188]}
          Length = 312

 Score = 23.8 bits (51), Expect = 4.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 46  FARDNTYHLQRHVWND 61
           F + +   LQ+  W  
Sbjct: 279 FFQASGVSLQQWQWIS 294


>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
           circulans [TaxId: 1397]}
          Length = 347

 Score = 24.0 bits (51), Expect = 5.2
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 45  AFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSR-ELLQNFSENHS 91
            FA      L+++ ++ V  DW +      +    R E  QN++   S
Sbjct: 150 VFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLS 197


>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus
          faecalis [TaxId: 1351]}
          Length = 250

 Score = 23.9 bits (51), Expect = 5.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 8  HLLAVRPYKKPELYAALTRDGI 29
           LL  R   K + YA +  DG+
Sbjct: 2  ELLTSRAVIKKDNYAIIPHDGL 23


>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
          subtilis [TaxId: 1423]}
          Length = 271

 Score = 23.7 bits (50), Expect = 6.3
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 2  LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRN 35
          +Q++I+  L V+P   P+       + ++   + 
Sbjct: 2  MQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKK 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,652
Number of extensions: 15427
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 20
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)