BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10144
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09453|GLRB4_CAEEL Glycine receptor subunit beta-type 4 OS=Caenorhabditis elegans
GN=ggr-1 PE=3 SV=2
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
SY+PT LIVIISW SFW+DV++VPGR +L +TTLL +++QSS
Sbjct: 254 SYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQSSA 296
>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1
Length = 452
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303
>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1
SV=1
Length = 452
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303
>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2
SV=1
Length = 464
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302
>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1
Length = 452
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303
>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2
Length = 464
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302
>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2
Length = 464
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302
>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1
Length = 444
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 252 YIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSG 293
>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1
SV=4
Length = 457
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SW+SFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297
>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2
Length = 457
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SW+SFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297
>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2
Length = 457
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SW+SFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297
>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1
Length = 457
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SW+SFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297
>sp|Q94900|GLUCL_DROME Glutamate-gated chloride channel OS=Drosophila melanogaster
GN=GluClalpha PE=1 SV=2
Length = 456
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P ++VI+SWVSFW+D +VP R +LGVTTLL +++Q+SG
Sbjct: 252 YIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSG 293
>sp|Q5JXX5|GLRA4_HUMAN Glycine receptor subunit alpha-4 OS=Homo sapiens GN=GLRA4 PE=2 SV=3
Length = 417
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 263 YIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSG 304
>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3
Length = 456
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 37/42 (88%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
Y+P++LIVI+SWVSFW+++D+ P R LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSG 303
>sp|Q8N1C3|GBRG1_HUMAN Gamma-aminobutyric acid receptor subunit gamma-1 OS=Homo sapiens
GN=GABRG1 PE=2 SV=2
Length = 465
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P IL V++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 277 TYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 325
>sp|P21548|GBRG2_CHICK Gamma-aminobutyric acid receptor subunit gamma-2 OS=Gallus gallus
GN=GABRG2 PE=2 SV=1
Length = 474
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 278 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 326
>sp|P22723|GBRG2_MOUSE Gamma-aminobutyric acid receptor subunit gamma-2 OS=Mus musculus
GN=Gabrg2 PE=1 SV=3
Length = 474
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 278 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 326
>sp|P22300|GBRG2_BOVIN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Bos taurus
GN=GABRG2 PE=2 SV=1
Length = 475
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 279 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 327
>sp|P18508|GBRG2_RAT Gamma-aminobutyric acid receptor subunit gamma-2 OS=Rattus
norvegicus GN=Gabrg2 PE=1 SV=1
Length = 466
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 36/42 (85%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+
Sbjct: 278 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST 319
>sp|P23574|GBRG1_RAT Gamma-aminobutyric acid receptor subunit gamma-1 OS=Rattus
norvegicus GN=Gabrg1 PE=2 SV=1
Length = 465
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P IL V++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 277 TYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 325
>sp|Q9R0Y8|GBRG1_MOUSE Gamma-aminobutyric acid receptor subunit gamma-1 OS=Mus musculus
GN=Gabrg1 PE=2 SV=2
Length = 465
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65
+Y+P IL V++SWVSFW++ D+VP RT+LG+TT+L +++ S+ IA ++ P
Sbjct: 277 TYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST----IARKSLP 325
>sp|Q5REA1|GBRG2_PONAB Gamma-aminobutyric acid receptor subunit gamma-2 OS=Pongo abelii
GN=GABRG2 PE=2 SV=1
Length = 467
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 36/42 (85%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+
Sbjct: 279 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST 320
>sp|P18507|GBRG2_HUMAN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Homo sapiens
GN=GABRG2 PE=1 SV=2
Length = 467
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 36/42 (85%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P LIV++SWVSFW++ D+VP RT+LG+TT+L +++ S+
Sbjct: 279 TYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLST 320
>sp|A8MPY1|GBRR3_HUMAN Gamma-aminobutyric acid receptor subunit rho-3 OS=Homo sapiens
GN=GABRR3 PE=2 SV=2
Length = 467
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSS 51
+Y P IL+V++SWVSFW+D +VP R +LG+TT+L +S+
Sbjct: 274 TYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTMST 312
>sp|O00591|GBRP_HUMAN Gamma-aminobutyric acid receptor subunit pi OS=Homo sapiens
GN=GABRP PE=1 SV=1
Length = 440
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y+P+ +V++SWVSFW+ +DSVP RT +GVTT+L++++ G
Sbjct: 249 TYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIG 291
>sp|Q5EA06|GBRP_BOVIN Gamma-aminobutyric acid receptor subunit pi OS=Bos taurus GN=GABRP
PE=2 SV=1
Length = 440
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y+P+ +V++SWVSFW+ +DSVP RT +GVTT+L++++ G
Sbjct: 249 TYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIG 291
>sp|Q8QZW7|GBRP_MOUSE Gamma-aminobutyric acid receptor subunit pi OS=Mus musculus
GN=Gabrp PE=2 SV=1
Length = 440
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y+P+ +V++SWVSFW+ +DSVP RT +GVTT+L++++ G
Sbjct: 249 TYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIG 291
>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric acid receptor subunit gamma-3 OS=Mus musculus
GN=Gabrg3 PE=2 SV=2
Length = 467
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P IL V++SWVSFW+ D+ P RTTLG+TT+L +++ S+
Sbjct: 260 TYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLST 301
>sp|P28473|GBRG3_RAT Gamma-aminobutyric acid receptor subunit gamma-3 OS=Rattus
norvegicus GN=Gabrg3 PE=2 SV=1
Length = 467
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P IL V++SWVSFW+ D+ P RTTLG+TT+L +++ S+
Sbjct: 260 TYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLST 301
>sp|P34904|GBRG4_CHICK Gamma-aminobutyric acid receptor subunit gamma-4 OS=Gallus gallus
GN=GABRG4 PE=2 SV=1
Length = 457
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 5 KRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+ G +Y+P IL V++SWVSFW+ DS P RT+LG+TT+L +++ S+
Sbjct: 254 RMGYFAIQTYIPCILTVVLSWVSFWIKRDSTPARTSLGITTVLTMTTLST 303
>sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric acid receptor subunit gamma-3 OS=Homo sapiens
GN=GABRG3 PE=2 SV=2
Length = 467
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
+Y+P IL V++SWVSFW+ D+ P RT LG+TT+L +++ S+
Sbjct: 260 TYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLST 301
>sp|O09028|GBRP_RAT Gamma-aminobutyric acid receptor subunit pi OS=Rattus norvegicus
GN=Gabrp PE=2 SV=1
Length = 440
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y+P+ +V++SWVSFW+ ++SVP RT +GVTT+L++++ G
Sbjct: 249 TYVPSTFLVVLSWVSFWISLESVPARTCIGVTTVLSMTTLMIG 291
>sp|P50573|GBRR3_RAT Gamma-aminobutyric acid receptor subunit rho-3 OS=Rattus norvegicus
GN=Gabrr3 PE=1 SV=1
Length = 464
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 34/43 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P +L+V++SWVSFW+D +VP R +LG+TT+L +S+ +G
Sbjct: 271 TYFPAMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIVTG 313
>sp|P26714|GBRB_LYMST Gamma-aminobutyric acid receptor subunit beta OS=Lymnaea stagnalis
PE=2 SV=1
Length = 499
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+YLP+ILIV++SWVSFW++ ++ R LG+TT+L +++ S+G
Sbjct: 256 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISNG 298
>sp|Q08832|GBRB3_DROME Gamma-aminobutyric acid receptor subunit beta-like OS=Drosophila
melanogaster GN=Lcch3 PE=1 SV=2
Length = 496
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+YLP+ILIV++SWVSFW++ ++ R LG+TT+L +++ S+G
Sbjct: 263 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTG 305
>sp|Q0II76|GBRR2_BOVIN Gamma-aminobutyric acid receptor subunit rho-2 OS=Bos taurus
GN=GABRR2 PE=2 SV=4
Length = 465
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R +LG+TT+L +S+ +G
Sbjct: 268 TYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITG 310
>sp|P63079|GBRB3_RAT Gamma-aminobutyric acid receptor subunit beta-3 OS=Rattus
norvegicus GN=Gabrb3 PE=1 SV=1
Length = 473
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSS 51
+Y+P+ILI I+SWVSFW++ D+ R LG+TT+L +++
Sbjct: 250 TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTT 288
>sp|P63080|GBRB3_MOUSE Gamma-aminobutyric acid receptor subunit beta-3 OS=Mus musculus
GN=Gabrb3 PE=2 SV=1
Length = 473
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSS 51
+Y+P+ILI I+SWVSFW++ D+ R LG+TT+L +++
Sbjct: 250 TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTT 288
>sp|O18276|GBRB_CAEEL Gamma-aminobutyric acid receptor subunit beta OS=Caenorhabditis
elegans GN=gab-1 PE=2 SV=3
Length = 550
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+YLP +LIV++SWVSFW++ ++ R LG+TT+L +++ S+G
Sbjct: 268 TYLPCVLIVMLSWVSFWINHEATSARVALGITTVLTMTTISTG 310
>sp|P56476|GBRR2_MOUSE Gamma-aminobutyric acid receptor subunit rho-2 OS=Mus musculus
GN=Gabrr2 PE=2 SV=4
Length = 465
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R +LG+ T+L +S+ +G
Sbjct: 268 TYFPATLMVMLSWVSFWIDHRAVPARVSLGIMTVLTMSTIITG 310
>sp|P47742|GBRR2_RAT Gamma-aminobutyric acid receptor subunit rho-2 OS=Rattus norvegicus
GN=Gabrr2 PE=1 SV=3
Length = 465
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R +LG+ T+L +S+ +G
Sbjct: 268 TYFPATLMVMLSWVSFWIDHRAVPARVSLGIMTVLTMSTIITG 310
>sp|P28476|GBRR2_HUMAN Gamma-aminobutyric acid receptor subunit rho-2 OS=Homo sapiens
GN=GABRR2 PE=2 SV=5
Length = 465
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R +LG+TT+L +++ +G
Sbjct: 268 TYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITG 310
>sp|P24046|GBRR1_HUMAN Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens
GN=GABRR1 PE=2 SV=2
Length = 479
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R LG+TT+L +S+ +G
Sbjct: 288 TYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITG 330
>sp|P56475|GBRR1_MOUSE Gamma-aminobutyric acid receptor subunit rho-1 OS=Mus musculus
GN=Gabrr1 PE=2 SV=2
Length = 480
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R LG+TT+L +S+ +G
Sbjct: 289 TYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITG 331
>sp|P50572|GBRR1_RAT Gamma-aminobutyric acid receptor subunit rho-1 OS=Rattus norvegicus
GN=Gabrr1 PE=1 SV=2
Length = 480
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
+Y P L+V++SWVSFW+D +VP R LG+TT+L +S+ +G
Sbjct: 289 TYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITG 331
>sp|P24045|GBRB4_CHICK Gamma-aminobutyric acid receptor subunit beta-4 OS=Gallus gallus
GN=GABRB4 PE=2 SV=1
Length = 488
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSS 51
+Y+P+ILI I+SWVSFW++ D+ R LGVTT+L +++
Sbjct: 249 TYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTT 287
>sp|Q9JLF1|GBRT_MOUSE Gamma-aminobutyric acid receptor subunit theta OS=Mus musculus
GN=Gabrq PE=2 SV=1
Length = 638
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
Y PT+L I+SW+SFWM+ DS R T+G+T++L +++ S
Sbjct: 272 YWPTVLTTILSWISFWMNYDSSAARVTIGLTSILVLTTIDS 312
>sp|P41849|LGC50_CAEEL Ligand-gated ion channel 50 OS=Caenorhabditis elegans GN=lgc-50
PE=3 SV=3
Length = 491
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQ 52
SY PT L VI SWV F+ DV SV R TLGV++LLA++ Q
Sbjct: 244 SYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQ 283
>sp|P19019|GBRB3_CHICK Gamma-aminobutyric acid receptor subunit beta-3 OS=Gallus gallus
GN=GABRB3 PE=2 SV=1
Length = 476
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSS 51
+Y+P+ILI I+SWVSFW++ D+ R LG+TT+L +++
Sbjct: 250 TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTT 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,250,739
Number of Sequences: 539616
Number of extensions: 903828
Number of successful extensions: 3551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3368
Number of HSP's gapped (non-prelim): 177
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)