Query psy10144
Match_columns 88
No_of_seqs 103 out of 440
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 18:56:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkg_A Acetylcholine receptor; 99.9 1.4E-22 4.9E-27 137.7 2.7 72 2-77 45-117 (140)
2 2lly_A Neuronal acetylcholine 99.8 2.7E-22 9.2E-27 135.7 2.5 70 3-76 4-74 (137)
3 2ksr_A Neuronal acetylcholine 99.8 4.5E-22 1.5E-26 138.3 2.0 70 3-76 25-95 (164)
4 3rhw_A Avermectin-sensitive gl 99.8 3.1E-22 1.1E-26 149.5 0.9 71 3-76 210-280 (347)
5 2bg9_E Acetylcholine receptor 99.8 6.2E-22 2.1E-26 149.5 -3.1 71 3-76 208-279 (370)
6 2bg9_A Acetylcholine receptor 99.8 1.8E-21 6.1E-26 147.0 -2.3 70 3-76 208-278 (370)
7 2bg9_B Acetylcholine receptor 99.8 4.5E-21 1.5E-25 145.0 -0.9 70 3-76 205-275 (370)
8 2bg9_C Acetylcholine receptor 99.8 2.2E-21 7.5E-26 146.7 -3.1 70 3-76 207-277 (369)
9 3tlw_A GLR4197 protein, GLIC; 99.8 4.3E-20 1.5E-24 136.5 0.8 69 3-76 195-263 (321)
10 3rqw_A ELIC pentameric ligand 99.8 6E-20 2.1E-24 135.8 0.9 69 3-76 198-266 (322)
11 4aq5_B Acetylcholine receptor 99.8 1.1E-19 3.8E-24 142.4 1.9 70 3-76 238-308 (493)
12 4aq5_A Acetylcholine receptor 99.7 6.4E-20 2.2E-24 142.9 -2.0 70 3-76 232-302 (461)
13 4aq5_E Acetylcholine receptor 99.7 5.3E-20 1.8E-24 144.1 -2.9 71 3-76 215-286 (488)
14 4aq5_C Acetylcholine receptor 99.7 2.2E-19 7.6E-24 141.6 -2.0 70 3-76 243-313 (522)
15 1oed_A Acetylcholine receptor 99.7 1.5E-18 5.2E-23 125.5 -2.6 67 6-76 1-68 (227)
16 1oed_E Acetylcholine receptor 99.7 2E-18 6.9E-23 126.9 -2.2 68 6-76 1-69 (260)
17 1oed_B Acetylcholine receptor 99.6 3.5E-18 1.2E-22 125.1 -2.7 67 6-76 1-68 (250)
18 1oed_C Acetylcholine receptor 99.6 5.6E-17 1.9E-21 119.2 -2.1 67 6-76 1-68 (260)
19 1vry_A Glycine receptor alpha- 99.3 2.3E-14 7.7E-19 88.9 -2.3 39 35-76 1-39 (76)
20 1mot_A Glycine receptor alpha- 97.9 4.8E-07 1.6E-11 45.6 -1.5 28 35-65 1-28 (28)
21 2kv5_A FST, putative uncharact 39.4 32 0.0011 17.5 2.7 27 8-34 3-29 (33)
22 4b19_A PEPA1; toxin, toxin apo 22.0 21 0.00072 17.8 0.2 23 10-32 4-26 (30)
No 1
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.85 E-value=1.4e-22 Score=137.73 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhhh
Q psy10144 2 GPNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERER 77 (88)
Q Consensus 2 ~~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~~ 77 (88)
-+|+++||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++... +++++|++| |+|++|.|+.
T Consensus 45 lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~---v~~~lP~tS~~vPlI~~y~~ 117 (140)
T 2lkg_A 45 GGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKK---IVELIPSTSSAVPLIGKYML 117 (140)
T ss_dssp SSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHG---GGGTCTTTGGGHHHHHHHHH
T ss_pred EEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHH---HHHhCCCccccccHHHHHHH
Confidence 379999999999999999999999999999996 79999999999999999999 999999999 9999999984
No 2
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-22 Score=135.66 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=68.4
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+|+ ++|+++|+|++|+++++... +++++|++| |+|++|.|+
T Consensus 4 rR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~---~~~~lP~tS~~vpli~~y~ 74 (137)
T 2lly_A 4 EELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLL---ITEIIPSTSSVSPSIGEYL 74 (137)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHH---HHHHCSCCSSSCCSTHHHH
T ss_pred EeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHH---HHHhCCCCcccchHHHHHH
Confidence 79999999999999999999999999999998 79999999999999999999 999999999 999999998
No 3
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.83 E-value=4.5e-22 Score=138.27 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=68.5
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+|+ ++|+++|+|++|+++++... +++++|++| |+|++|+|+
T Consensus 25 rR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~---v~~~lP~tS~~vPlI~~y~ 95 (164)
T 2ksr_A 25 RRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLL---ISKIVPPTSLDVPLVGKYL 95 (164)
T ss_dssp CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHH---HHTTCCSSCTTHHHHHHHH
T ss_pred EEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHH---HHHHCCCCcccCCHHHHHH
Confidence 79999999999999999999999999999998 79999999999999999999 999999999 999999998
No 4
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.83 E-value=3.1e-22 Score=149.54 Aligned_cols=71 Identities=41% Similarity=0.679 Sum_probs=69.6
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++... +++.+|++||+|+||+|+
T Consensus 210 ~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~---~~~~lP~~S~v~~id~~~ 280 (347)
T 3rhw_A 210 KREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAG---INSQLPPVSYIKAIDVWI 280 (347)
T ss_dssp EECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHH---HHHTSCCCSSCCHHHHHH
T ss_pred EEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHH---HHhhCCCccceeHHHHHH
Confidence 69999999999999999999999999999999889999999999999999999 999999999999999998
No 5
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.80 E-value=6.2e-22 Score=149.54 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=69.4
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++... +++.||++|| +|+||+|+
T Consensus 208 ~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~ 279 (370)
T 2bg9_E 208 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL 279 (370)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCSHHH
T ss_pred EEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHH---HHHhCCCccCCCChHHHHH
Confidence 79999999999999999999999999999998899999999999999999999 9999999999 99999998
No 6
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.79 E-value=1.8e-21 Score=147.01 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=68.1
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++ ++|+++|+|++|+++++... +++.+|++|| +|+||+|+
T Consensus 208 ~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~ 278 (370)
T 2bg9_A 208 QRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM 278 (370)
T ss_dssp ECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCGGGH
T ss_pred EEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHH---HHhhCCCCcCCCCHHHHHH
Confidence 79999999999999999999999999999998 69999999999999999999 9999999998 99999998
No 7
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.79 E-value=4.5e-21 Score=144.98 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=68.2
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++... +++.+|++|| +|+||+|+
T Consensus 205 ~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~ 275 (370)
T 2bg9_B 205 QRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLL---LADKVPETSLSVPIIISYL 275 (370)
T ss_dssp ECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSCCCSHHH
T ss_pred EEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHH---HHhhCCCccccccHHHHHH
Confidence 7999999999999999999999999999999 689999999999999999999 9999999998 99999998
No 8
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.79 E-value=2.2e-21 Score=146.65 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++... +++.||++|| +|+||+|+
T Consensus 207 ~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~ 277 (369)
T 2bg9_C 207 RRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLL---TSQRLPETALAVPLIGKYL 277 (369)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHTSCCCHHHH
T ss_pred EEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHH---HHHhCCCCccCccHHHHHH
Confidence 7999999999999999999999999999999 589999999999999999999 9999999998 99999998
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.76 E-value=4.3e-20 Score=136.52 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=65.9
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~ 76 (88)
+|+++||++++|+||++++++||++|| |++.++|+++|+|++|+++++... +++.+|++||+|+||+|+
T Consensus 195 ~R~~~~y~~~~~iP~~li~~ls~~sF~--p~~~~~Rv~l~it~lL~~t~~~~~---~~~~lP~~s~vp~i~~~~ 263 (321)
T 3tlw_A 195 SRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNIL---VETCLPKTPYMTYTGAII 263 (321)
T ss_dssp EECCTTHHHHTHHHHHHHHHHHGGGGG--CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCSSCCHHHHHH
T ss_pred EEeeceeehhHHHHHHHHHHHhheeec--cCCCCCcEEEEhhHHHHHHHHHHH---HHhhCCCccccHHHHHHH
Confidence 799999999999999999999999999 555579999999999999999999 999999999999999998
No 10
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.76 E-value=6e-20 Score=135.80 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=66.8
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+| +.++|+++|+|++|+++++... +++.+|++||+|+||+|+
T Consensus 198 ~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~---~~~~lP~~s~vp~i~~~~ 266 (322)
T 3rqw_A 198 VRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFY---TSNILPRLPYTTVIDQMI 266 (322)
T ss_dssp EECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHH---HHHHSCCCSSCCHHHHHH
T ss_pred EEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHH---HhhhCCCccchHHHHHHH
Confidence 79999999999999999999999999999 5579999999999999999999 999999999999999998
No 11
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.76 E-value=1.1e-19 Score=142.36 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=68.2
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++ ++|+++|+|++|+++++... +++.+|++|| +++||+|+
T Consensus 238 rR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~ 308 (493)
T 4aq5_B 238 QRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLL---LADKVPETSLSVPIIISYL 308 (493)
T ss_dssp BCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHH---HHHHTTTTTTSSCCCCHHH
T ss_pred EeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHH---HHhcCCccccCCCchHhHH
Confidence 79999999999999999999999999999997 79999999999999999999 9999999998 99999998
No 12
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.74 E-value=6.4e-20 Score=142.89 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=68.5
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++. +|+++|+|++|+++++... +++.+|++| |+|+||+|+
T Consensus 232 ~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~---v~~~LP~tS~~vplI~~y~ 302 (461)
T 4aq5_A 232 QRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM 302 (461)
T ss_dssp ECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCGGGH
T ss_pred EecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHH---HHhhcCcccCCcCHHHHHH
Confidence 799999999999999999999999999999997 9999999999999999999 999999999 999999998
No 13
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.73 E-value=5.3e-20 Score=144.09 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=69.2
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++... +++.+|++|| +++||+|+
T Consensus 215 rR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~ 286 (488)
T 4aq5_E 215 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL 286 (488)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCHHHH
T ss_pred ccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHH---HHhhCCccccCccHHHHHH
Confidence 69999999999999999999999999999998899999999999999999999 9999999998 99999998
No 14
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.71 E-value=2.2e-19 Score=141.61 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144 3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE 76 (88)
Q Consensus 3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~ 76 (88)
+|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++... +++.+|++|| +++||+|+
T Consensus 243 rR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~ 313 (522)
T 4aq5_C 243 RRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLL---TSQRLPETALAVPLIGKYL 313 (522)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHH---HHHHHHHHTTTTTCCHHHH
T ss_pred ecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHH---HHhcCCcccCCccHHHHHH
Confidence 7999999999999999999999999999999 689999999999999999999 9999999998 99999998
No 15
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.67 E-value=1.5e-18 Score=125.47 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=64.8
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++... +++.+|++| |++++|.|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~---v~~~lP~tS~~vPli~~y~ 68 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM 68 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHH---HHHhCCCcccccchHHHHH
Confidence 47999999999999999999999999998 69999999999999999999 999999999 999999998
No 16
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.66 E-value=2e-18 Score=126.93 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=65.5
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++|+||++++++||++||+|+|+.++|+++|+|++|+++++... +++.+|++| |+++||+|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~---~~~~lP~tS~~vPli~~y~ 69 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL 69 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCSHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHH---HHHhCCCCcccchhHHHHH
Confidence 47999999999999999999999999997789999999999999999999 999999999 999999997
No 17
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.65 E-value=3.5e-18 Score=125.08 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=64.8
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++... +++.+|++| |+++||+|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~---v~~~lP~tS~~vPli~~y~ 68 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLL---LADKVPETSLSVPIIIRYL 68 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCTTH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHH---HHHHCCCCcccCCcHHHHH
Confidence 47999999999999999999999999998 69999999999999999999 999999999 999999998
No 18
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.58 E-value=5.6e-17 Score=119.21 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=64.4
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++++||+++++++|++||+|+|+ ++|+++|+|++|+++++... +++.+|++| |+++||.|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~---~~~~lP~tS~~vPli~~y~ 68 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLL---TSQRLPETALAVPLIGKYL 68 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHH---HHHHCCCCcccchhHHHHH
Confidence 47999999999999999999999999996 69999999999999999999 999999998 999999998
No 19
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.35 E-value=2.3e-14 Score=88.85 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=37.2
Q ss_pred CCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144 35 VPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE 76 (88)
Q Consensus 35 ~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~ 76 (88)
.|||++||++++|+++++..+ .++++|+|||+||+|+|+
T Consensus 1 ~paRv~LGittvLtmtt~~~~---~~~~lPkVSYikAiDvw~ 39 (76)
T 1vry_A 1 LPARVGLGITTVLTLTTQSSG---SRASLPKVSYVKAIDIWL 39 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC---TTTCCCSHHHHHHHHHTH
T ss_pred CCceEEechHHHHHHHHHhcC---cccCCCCccchHHHHHHH
Confidence 379999999999999999988 999999999999999998
No 20
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=97.94 E-value=4.8e-07 Score=45.60 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=25.8
Q ss_pred CCCceeeeeehhhhhhhhccchhhhhhcCCC
Q psy10144 35 VPGRTTLGVTTLLAVSSQSSGYANIASQTEP 65 (88)
Q Consensus 35 ~~aRv~LgittlLt~~~~~~~~~~~~~~lP~ 65 (88)
+|||++||++++|+++++..+ .++++||
T Consensus 1 ~paRv~LGittvLt~tt~~~~---~~~~lPk 28 (28)
T 1mot_A 1 APARVGLGITTVLTMTTQSSG---SRASLPK 28 (28)
T ss_dssp CCHHHHHHHHHHHHHCCSSSS---SSSSCCC
T ss_pred CCceEEEcchhHHHHHHHHhh---HhhhCCC
Confidence 379999999999999999998 8889996
No 21
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=39.37 E-value=32 Score=17.48 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCC
Q psy10144 8 LTGRLSYLPTILIVIISWVSFWMDVDS 34 (88)
Q Consensus 8 yyl~~~yiP~~livilSwvsFWi~~~~ 34 (88)
.++.+++.|.+.=++++.+.-|++...
T Consensus 3 ~i~~~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 456788999999999999999999764
No 22
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=21.96 E-value=21 Score=17.81 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHhhhccccC
Q psy10144 10 GRLSYLPTILIVIISWVSFWMDV 32 (88)
Q Consensus 10 l~~~yiP~~livilSwvsFWi~~ 32 (88)
++++..|.+-=++++..+.|++.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 45667788888889999999874
Done!