Query psy10144
Match_columns 88
No_of_seqs 103 out of 440
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 18:56:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oede_ f.36.1.1 (E:) Acetylch 99.8 6.5E-22 4.7E-26 139.7 -2.2 68 6-76 1-69 (260)
2 d1oeda_ f.36.1.1 (A:) Acetylch 99.7 1.3E-20 9.8E-25 131.4 -2.6 67 6-76 1-68 (227)
3 d1oedc_ f.36.1.1 (C:) Acetylch 99.7 1.2E-19 8.8E-24 127.3 -2.1 67 6-76 1-68 (260)
4 d1oedb_ f.36.1.1 (B:) Acetylch 99.7 5.2E-19 3.8E-23 124.0 -2.7 67 6-76 1-68 (250)
5 d1d0da_ g.8.1.2 (A:) Anticoagu 12.2 24 0.0018 18.6 0.2 9 27-35 35-43 (60)
6 d1jb0i_ f.23.17.1 (I:) Subunit 9.4 73 0.0053 15.2 1.5 15 13-27 8-22 (38)
7 d1v54b2 f.17.2.1 (B:1-90) Mito 9.2 90 0.0065 17.0 2.1 16 13-28 66-81 (90)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 8.4 99 0.0072 17.3 2.1 16 13-28 82-97 (107)
9 d1utha_ c.94.1.1 (A:) LysR-typ 8.0 1.2E+02 0.0086 17.2 2.4 37 31-67 6-42 (219)
10 d2axtm1 f.23.35.1 (M:1-36) Pho 7.9 1.3E+02 0.0096 14.1 2.1 13 11-23 13-25 (36)
No 1
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=99.80 E-value=6.5e-22 Score=139.72 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=65.9
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++|+||++++++||++||+|+|+.++|++||+|++|+++++... +++++|++| |++++|+|+
T Consensus 1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~---v~~~lP~tS~~vPli~~~~ 69 (260)
T d1oede_ 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL 69 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCSHH
T ss_pred CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHH---HHHhCCCccccccHHHHHH
Confidence 57999999999999999999999999999889999999999999999999 999999998 899999998
No 2
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=99.75 E-value=1.3e-20 Score=131.42 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=64.8
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++... +++++|++| |++++|+|+
T Consensus 1 plyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~---v~~~lP~tS~~vPli~~y~ 68 (227)
T d1oeda_ 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM 68 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred CcEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHH---HHHhCCCcccCcCccchHH
Confidence 57999999999999999999999999998 79999999999999999999 999999998 899999998
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=99.71 E-value=1.2e-19 Score=127.28 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=64.8
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++... +++.+|++| |++.+|+|+
T Consensus 1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~---v~~~lP~tS~~vPli~~y~ 68 (260)
T d1oedc_ 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLL---TSQRLPETALAVPLIGKYL 68 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred CceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHH---HHHhCCCCCCCcchHHHHH
Confidence 57999999999999999999999999998 69999999999999999999 999999998 999999998
No 4
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=99.67 E-value=5.2e-19 Score=123.99 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=64.7
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144 6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE 76 (88)
Q Consensus 6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~ 76 (88)
+.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++... +++.+|++| +++.+|.|+
T Consensus 1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~---v~~~~P~~s~~~p~i~~~~ 68 (250)
T d1oedb_ 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLL---LADKVPETSLSVPIIIRYL 68 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCTTH
T ss_pred CcEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHH---HHHhCCCCcCcchHHHHHH
Confidence 57999999999999999999999999998 69999999999999999999 999999998 899999998
No 5
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=12.16 E-value=24 Score=18.56 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=6.9
Q ss_pred hccccCCCC
Q psy10144 27 SFWMDVDSV 35 (88)
Q Consensus 27 sFWi~~~~~ 35 (88)
+|||.|+.-
T Consensus 35 ~fwicpe~~ 43 (60)
T d1d0da_ 35 SFWICPEDH 43 (60)
T ss_dssp EEEECTTTC
T ss_pred cceECCccC
Confidence 699998753
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=9.38 E-value=73 Score=15.21 Aligned_cols=15 Identities=40% Similarity=0.988 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhh
Q psy10144 13 SYLPTILIVIISWVS 27 (88)
Q Consensus 13 ~yiP~~livilSwvs 27 (88)
.|+|-+++=++.|..
T Consensus 8 syLPwI~iPvv~wl~ 22 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLM 22 (38)
T ss_dssp TTHHHHHHHHHHTHH
T ss_pred HhcchhHHHHHHHHH
Confidence 467777777777763
No 7
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.18 E-value=90 Score=16.99 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhc
Q psy10144 13 SYLPTILIVIISWVSF 28 (88)
Q Consensus 13 ~yiP~~livilSwvsF 28 (88)
+.+|+++++++++=||
T Consensus 66 TiiP~lILi~ia~PSl 81 (90)
T d1v54b2 66 TILPAIILILIALPSL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679988888887665
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=8.38 E-value=99 Score=17.26 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhc
Q psy10144 13 SYLPTILIVIISWVSF 28 (88)
Q Consensus 13 ~yiP~~livilSwvsF 28 (88)
+.+|+++++.+.+-|+
T Consensus 82 TviP~lIL~~laipSl 97 (107)
T d3ehbb2 82 TLVPVLILVAIGAFSL 97 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789998888877665
No 9
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
Probab=8.00 E-value=1.2e+02 Score=17.18 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=26.9
Q ss_pred cCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC
Q psy10144 31 DVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT 67 (88)
Q Consensus 31 ~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS 67 (88)
+|.....++.||++-.+....+-..-+.+++.-|++.
T Consensus 6 dP~~~~~~~rI~~~~~~~~~~lp~ll~~f~~~~P~v~ 42 (219)
T d1utha_ 6 DPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQ 42 (219)
T ss_dssp CTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CccccCCEEEEEEcHHHHHHHHHHHHHHHHHHCCCCE
Confidence 4666678889999988877766555445677888875
No 10
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.92 E-value=1.3e+02 Score=14.09 Aligned_cols=13 Identities=15% Similarity=0.705 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q psy10144 11 RLSYLPTILIVII 23 (88)
Q Consensus 11 ~~~yiP~~livil 23 (88)
+-+++|+.++.++
T Consensus 13 LFilvPt~FLliL 25 (36)
T d2axtm1 13 LFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3456787776664
Done!