RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10144
         (88 letters)



>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 260

 Score = 59.8 bits (144), Expect = 6e-13
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
            P +LI  +  + +++   +   + TL ++ LLA +      A  
Sbjct: 9  IAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQK 54


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 250

 Score = 54.4 bits (130), Expect = 5e-11
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           +P ILI I++ + F++  D+   + +L ++ LLAV+      A+ 
Sbjct: 9  IIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADK 53


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 260

 Score = 53.6 bits (128), Expect = 8e-11
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQT 63
            P +LI  ++ ++F++  +S   + +  ++ LLA +      +    +T
Sbjct: 9  ITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPET 57


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 227

 Score = 53.2 bits (127), Expect = 1e-10
 Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           +P +L   ++ + F++  DS   + TL ++ LL+++        +
Sbjct: 9  IIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVEL 53


>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction
          centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
          Length = 38

 Score = 24.4 bits (53), Expect = 0.68
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 13 SYLPTILIVIISWV 26
          S+LP I I ++ W+
Sbjct: 8  SFLPWIFIPVVCWL 21


>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon
          Natronobacterium pharaonis [TaxId: 2257]}
          Length = 225

 Score = 23.1 bits (49), Expect = 5.6
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 11 RLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLA 48
          R  Y+  + I  I+ V++ +    V        T    
Sbjct: 34 RRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAP 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,908
Number of extensions: 9661
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)