BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10145
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 95.9 bits (237), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 62/100 (62%)
Query: 10 HYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSP 69
HYVRCI+ N + + V+HQV+YLGLLE VR+RR+GF R+ Y F +RYK+L
Sbjct: 583 HYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCK 642
Query: 70 RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
+TWP + +A +IL I E G++K+F+R+P
Sbjct: 643 KTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNP 682
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 95.9 bits (237), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 62/100 (62%)
Query: 10 HYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSP 69
HYVRCI+ N + + V+HQV+YLGLLE VR+RR+GF R+ Y F +RYK+L
Sbjct: 583 HYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCK 642
Query: 70 RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
+TWP + +A +IL I E G++K+F+R+P
Sbjct: 643 KTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNP 682
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 716
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 717 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 764
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 716
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 717 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 764
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 716
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 717 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 764
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 653 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 712
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 713 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 760
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 652 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 711
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 712 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 759
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 82.0 bits (201), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 660 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 719
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 720 KQRYSILAPNAIPQGFVDGKTVSEKILTGLQMDPSEYRLGTTKVFFKA 767
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 79.7 bits (195), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P + + LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 659 MTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDF 718
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+P P + +L L I H ++ FG +K+F ++
Sbjct: 719 RQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKA 767
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 659 MKNLYSTHPHFVRCIIPNELKTPGLIDAALVLHQLRCNGVLEGIRICRKGFPNRIIYSEF 718
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P L L + E+ G +K+F ++
Sbjct: 719 KQRYSILAPNAVPSGFADGKVVTDKALSALQLDPNEYRLGNTKVFFKA 766
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 75.1 bits (183), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL H+VRCI PN P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 659 MCNLRRTNPHFVRCIIPNLEKDPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 718
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 719 KQRYSILAPNAIPQGFVDGKTVSEKILTGLQMDPSEYRLGTTKVFFKA 766
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P E LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 658 MANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADF 717
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +L + + H ++ FG +K+F ++
Sbjct: 718 KQRYRVLNASAIPEGQFMDSKKASEKLLGSIDVDHTQYRFGHTKVFFKA 766
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P E LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 661 MANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADF 720
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLF 105
RY++L+ P +A +L G + H ++AFG + +F
Sbjct: 721 KQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTXVF 766
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P E LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 658 MANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADF 717
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLF 105
RY++L+ P +A +L G + H ++AFG + +F
Sbjct: 718 KQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTXVF 763
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 653 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 712
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 713 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 759
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 700
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 701 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 747
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 700
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 701 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 747
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 653 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 712
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 713 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 759
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 653 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 712
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 713 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 759
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 748
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 653 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 712
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 713 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 759
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEAIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY L+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYDLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY L+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYDLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY L+P P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYDLAPNV-PRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRA 748
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ +LE +RI R GF R+ Y F
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNAVLEGIRITRKGFPNRIIYADF 700
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 701 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 747
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 707
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
SRY++L + L + +L L + ++ FG++K+F R+
Sbjct: 708 FSRYRVLMKQK--DVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRA 753
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 707
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
SRY++L + L + +L L + ++ FG++K+F R+
Sbjct: 708 FSRYRVLMKQK--DVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRA 753
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 707
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
SRY++L + L + +L L + ++ FG++K+F R+
Sbjct: 708 FSRYRVLMKQK--DVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRA 753
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ +LE +RI R GF R+ Y F
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNVVLEGIRITRKGFPNRIIYADF 700
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
V RY LL+P P +A +L L I ++ FG +K+F R+
Sbjct: 701 VKRYYLLAPNV-PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRA 747
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M LS+ +VRCI PN E LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 637 MATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEF 696
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+P P +A ++ L + + G+SK+F R+
Sbjct: 697 RQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRA 744
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRL 55
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRI 695
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGF 51
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF
Sbjct: 641 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGF 691
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 629 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 688
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 689 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 733
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 628 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 687
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 688 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 732
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 654 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 713
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 714 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 758
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 664 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 723
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 724 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 768
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 628 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 687
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 688 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 732
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 654 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 713
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 714 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 758
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 655 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 714
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 715 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 759
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 655 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 714
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 715 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 759
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 654 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 713
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 714 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 758
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 651 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 710
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 711 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 755
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 652 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 711
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 712 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 756
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 664 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 723
Query: 61 VSRYKLLSP----RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P R P C + L + ++ FG +K+F R
Sbjct: 724 YNMYKKYMPDKLARLDPRLFCK------ALFKALGLNEIDYKFGLTKVFFR 768
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 39 GLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP 73
GLL +I +S Y L +EH+V+ K P WP
Sbjct: 188 GLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWP 222
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 39 GLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP 73
GLL +I +S Y L +EH+V+ K P WP
Sbjct: 190 GLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWP 224
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 39 GLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP 73
GLL +I +S Y L +EH+V+ K P WP
Sbjct: 190 GLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWP 224
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 39 GLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP 73
GLL +I +S Y L +EH+V+ K P WP
Sbjct: 190 GLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWP 224
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia
Bovis
Length = 105
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 15 IRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTW 72
+ N G F +V Q + GLL+ R+ S +P H + K L+P W
Sbjct: 43 VTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIHAFT-MKCLTPGEW 99
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 39 GLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP 73
GLL +I +S Y L +EH+V+ K P WP
Sbjct: 186 GLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWP 220
>pdb|2Y7W|A Chain A, Dntr Inducer Binding Domain
pdb|2Y7W|B Chain B, Dntr Inducer Binding Domain
pdb|2Y7W|C Chain C, Dntr Inducer Binding Domain
pdb|2Y7W|D Chain D, Dntr Inducer Binding Domain
pdb|2Y84|A Chain A, Dntr Inducer Binding Domain
pdb|2Y84|B Chain B, Dntr Inducer Binding Domain
pdb|2Y84|C Chain C, Dntr Inducer Binding Domain
pdb|2Y84|D Chain D, Dntr Inducer Binding Domain
pdb|2Y84|E Chain E, Dntr Inducer Binding Domain
pdb|2Y84|F Chain F, Dntr Inducer Binding Domain
pdb|2Y84|G Chain G, Dntr Inducer Binding Domain
pdb|2Y84|H Chain H, Dntr Inducer Binding Domain
Length = 228
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 1 MKNLSSKQLHY-VRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEH 59
M+ L+ + H + +RPN G+ + E+G V + L L+T GF R + H
Sbjct: 37 MEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQT------GFFQRRLFRH 90
Query: 60 -FVSRYKLLSPRT-WPFPLCSPIEAVHVILHGLPIPHGE 96
+V ++ P P L E HV + L HGE
Sbjct: 91 RYVCMFRKDHPSAKSPMSLKQFTELEHVGVVALNTGHGE 129
>pdb|2Y7K|A Chain A, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|B Chain B, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|C Chain C, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|D Chain D, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7P|A Chain A, Dntr Inducer Binding Domain In Complex With Salicylate.
Trigonal Crystal Form
Length = 218
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 1 MKNLSSKQLHY-VRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEH 59
M+ L+ + H + +RPN G+ + E+G V + L L+T GF R + H
Sbjct: 27 MEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQT------GFFQRRLFRH 80
Query: 60 -FVSRYKLLSPRT-WPFPLCSPIEAVHVILHGLPIPHGE 96
+V ++ P P L E HV + L HGE
Sbjct: 81 RYVCMFRKDHPSAKSPMSLKQFTELEHVGVVALNTGHGE 119
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 199 YEHWVPREKILTTNTW 214
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 199 YEHWVPREKILTTNTW 214
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 199 YEHWVPREKILTTNTW 214
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 198 YEHWVPREKILTTNTW 213
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 200 YEHWVPREKILTTNTW 215
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 200 YEHWVPREKILTTNTW 215
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 YEHFVSRYKLLSPRTW 72
YEH+V R K+L+ TW
Sbjct: 200 YEHWVPREKILTTNTW 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.145 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,485,858
Number of Sequences: 62578
Number of extensions: 126457
Number of successful extensions: 349
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 75
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)