Query psy10145
Match_columns 110
No_of_seqs 121 out of 1040
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:57:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01378 MYSc_type_I Myosin mot 100.0 1.9E-37 4.1E-42 240.5 8.9 110 1-110 556-665 (674)
2 cd01377 MYSc_type_II Myosin mo 100.0 4.7E-37 1E-41 238.9 9.1 110 1-110 576-685 (693)
3 PTZ00014 myosin-A; Provisional 100.0 5.2E-37 1.1E-41 241.2 9.0 109 1-109 652-760 (821)
4 cd01383 MYSc_type_VIII Myosin 100.0 2E-36 4.2E-41 234.8 8.8 108 1-110 562-669 (677)
5 cd01382 MYSc_type_VI Myosin mo 100.0 2.2E-36 4.7E-41 235.8 8.8 108 1-110 601-708 (717)
6 cd01380 MYSc_type_V Myosin mot 100.0 7E-36 1.5E-40 232.3 9.2 109 1-110 575-683 (691)
7 cd01386 MYSc_type_XVIII Myosin 100.0 5E-36 1.1E-40 234.7 8.4 109 1-109 623-758 (767)
8 smart00242 MYSc Myosin. Large 100.0 8.4E-36 1.8E-40 231.7 9.2 109 1-109 559-667 (677)
9 cd01381 MYSc_type_VII Myosin m 100.0 9.3E-36 2E-40 230.9 8.8 110 1-110 553-663 (671)
10 cd01385 MYSc_type_IX Myosin mo 100.0 1.6E-35 3.6E-40 230.2 8.7 106 1-110 575-680 (692)
11 cd01384 MYSc_type_XI Myosin mo 100.0 2.5E-35 5.3E-40 228.6 9.0 107 1-110 556-662 (674)
12 COG5022 Myosin heavy chain [Cy 100.0 9.2E-36 2E-40 238.5 5.7 109 1-109 619-731 (1463)
13 cd00124 MYSc Myosin motor doma 100.0 4.1E-35 8.9E-40 228.0 8.9 109 1-110 563-671 (679)
14 cd01387 MYSc_type_XV Myosin mo 100.0 8.4E-35 1.8E-39 225.8 9.6 108 1-109 561-668 (677)
15 cd01379 MYSc_type_III Myosin m 100.0 9.6E-35 2.1E-39 224.7 8.8 107 1-110 539-645 (653)
16 PF00063 Myosin_head: Myosin h 100.0 9E-34 2E-38 221.0 7.3 107 1-107 580-689 (689)
17 KOG0162|consensus 100.0 3E-30 6.5E-35 197.3 4.4 108 2-109 574-681 (1106)
18 KOG0161|consensus 100.0 1.7E-29 3.8E-34 208.7 6.2 109 1-109 651-759 (1930)
19 KOG0164|consensus 99.9 3.5E-28 7.5E-33 185.7 6.6 109 1-110 573-682 (1001)
20 KOG0163|consensus 99.9 3.7E-27 8E-32 181.1 7.4 108 1-110 654-761 (1259)
21 KOG0160|consensus 99.9 1.7E-27 3.7E-32 186.4 2.2 105 1-110 556-660 (862)
22 KOG4229|consensus 96.3 0.00071 1.5E-08 56.0 -1.0 100 3-109 805-904 (1062)
23 KOG4229|consensus 87.3 0.16 3.5E-06 42.6 -0.2 102 3-107 658-760 (1062)
24 smart00751 BSD domain in trans 65.7 4.1 9E-05 21.4 1.2 22 46-67 25-46 (51)
25 KOG3093|consensus 64.6 10 0.00022 26.0 3.2 41 57-99 153-193 (200)
26 KOG4671|consensus 56.8 7 0.00015 26.6 1.4 40 10-50 51-90 (201)
27 PF03909 BSD: BSD domain ; I 56.5 7.1 0.00015 21.4 1.2 17 51-67 35-51 (62)
28 PF13034 DUF3895: Protein of u 51.6 19 0.0004 21.1 2.4 29 77-105 19-47 (78)
29 PF03284 PHZA_PHZB: Phenazine 46.0 6.4 0.00014 25.8 -0.1 45 7-52 117-161 (162)
30 KOG3030|consensus 43.7 14 0.0003 27.3 1.3 48 6-54 135-184 (317)
31 PHA02902 putative IMV membrane 41.2 14 0.0003 20.8 0.7 20 24-43 48-67 (70)
32 COG4899 Uncharacterized protei 38.5 16 0.00034 23.9 0.8 13 8-20 48-60 (166)
33 PTZ00095 40S ribosomal protein 36.5 24 0.00052 23.7 1.5 29 16-44 110-138 (169)
34 PF08120 Toxin_32: Tamulustoxi 35.5 47 0.001 15.7 2.0 20 8-27 1-20 (35)
35 PF13216 DUF4024: Protein of u 33.2 21 0.00046 16.9 0.6 15 3-17 11-25 (35)
36 PF12108 SF3a60_bindingd: Spli 31.3 29 0.00063 16.1 0.9 13 55-67 7-19 (28)
37 PF11107 FANCF: Fanconi anemia 31.2 13 0.00029 27.6 -0.4 43 55-102 288-330 (340)
38 PF10862 FcoT: FcoT-like thioe 29.2 77 0.0017 21.0 2.9 39 25-63 53-91 (157)
39 COG5132 BUD31 Cell cycle contr 27.9 18 0.00039 23.0 -0.2 15 10-24 101-115 (146)
40 TIGR01406 dnaQ_proteo DNA poly 26.8 1.1E+02 0.0025 21.0 3.6 44 25-68 91-146 (225)
41 PRK09333 30S ribosomal protein 25.9 51 0.0011 21.7 1.6 30 16-45 86-115 (150)
42 PF01090 Ribosomal_S19e: Ribos 24.4 25 0.00054 22.8 0.0 30 15-44 84-113 (139)
43 PF02960 K1: K1 glycoprotein; 23.6 23 0.0005 22.2 -0.3 22 11-39 92-113 (130)
44 COG1152 CdhA CO dehydrogenase/ 23.0 1.5E+02 0.0033 24.3 3.9 17 78-94 742-758 (772)
45 PLN03181 glycosyltransferase; 22.5 1.3E+02 0.0029 23.4 3.4 46 9-55 389-435 (453)
46 KOG3404|consensus 21.9 48 0.001 21.2 0.9 14 9-22 100-113 (145)
47 cd06131 DNA_pol_III_epsilon_Ec 21.3 2.3E+02 0.005 18.0 4.3 41 25-65 90-141 (167)
No 1
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.9e-37 Score=240.50 Aligned_cols=110 Identities=47% Similarity=0.898 Sum_probs=103.9
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||+.|++..++....+++
T Consensus 556 m~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k 635 (674)
T cd01378 556 VETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAK 635 (674)
T ss_pred HHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999986555556889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.||+.+++++++|++|+||||||+|+
T Consensus 636 ~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~ 665 (674)
T cd01378 636 SGVEVILKDLNIDPEEYQMGKTKIFIRNPE 665 (674)
T ss_pred HHHHHHHHHcCCCcccEEecCceEEEeCch
Confidence 999999999999999999999999999984
No 2
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.7e-37 Score=238.88 Aligned_cols=110 Identities=35% Similarity=0.641 Sum_probs=103.8
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|++..++....+.+
T Consensus 576 ~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k 655 (693)
T cd01377 576 MTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAPNAIPKGFMDSK 655 (693)
T ss_pred HHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCcccccccCCCHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999987655556889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.||+.+++++++|++|+||||||+|+
T Consensus 656 ~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~ 685 (693)
T cd01377 656 KASEKILKSLELDPEQYRFGHTKVFFRAGV 685 (693)
T ss_pred HHHHHHHHhcCCCcccEEecCCeEeECccH
Confidence 999999999999999999999999999874
No 3
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.2e-37 Score=241.22 Aligned_cols=109 Identities=28% Similarity=0.567 Sum_probs=103.5
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|++||+|+||+|++++++.|||+|++|.+|+.||++|.+...+....+++
T Consensus 652 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k 731 (821)
T PTZ00014 652 MSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPK 731 (821)
T ss_pred HHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998876655556899
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.||+.+++++++|++|+||||||+|
T Consensus 732 ~~~~~il~~~~l~~~~~~iGkTKVFlr~~ 760 (821)
T PTZ00014 732 EKAEKLLERSGLPKDSYAIGKTMVFLKKD 760 (821)
T ss_pred HHHHHHHHHcCCCcccEEecCCeEEEcCc
Confidence 99999999999999999999999999987
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2e-36 Score=234.76 Aligned_cols=108 Identities=34% Similarity=0.631 Sum_probs=101.5
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|++..+. ..+++
T Consensus 562 ~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~--~~~~~ 639 (677)
T cd01383 562 MQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIA--SQDPL 639 (677)
T ss_pred HHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccC--CCCHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999997543 34778
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+++++.+++++++|++|+||||||+|+
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~ 669 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQ 669 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcH
Confidence 899999999999999999999999999985
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.2e-36 Score=235.78 Aligned_cols=108 Identities=22% Similarity=0.464 Sum_probs=101.5
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|++||+|+||+|++++++.|||+|++|.+|++||+.|++...+ ..+++
T Consensus 601 m~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~--~~~~~ 678 (717)
T cd01382 601 LEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV--RLDPR 678 (717)
T ss_pred HHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC--CCCHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999986543 24789
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|++||+.+++++++|++|+||||||+|+
T Consensus 679 ~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~ 708 (717)
T cd01382 679 LFCKALFKALGLNENDYKFGLTKVFFRPGK 708 (717)
T ss_pred HHHHHHHHHcCCCcccEEecceeEEecccH
Confidence 999999999999999999999999999984
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=7e-36 Score=232.28 Aligned_cols=109 Identities=36% Similarity=0.642 Sum_probs=102.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|++||+|+||+|++++++.|||+|++|.+|+.||++|++... ....+.+
T Consensus 575 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~~~-~~~~~~k 653 (691)
T cd01380 575 MSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRVLVPSKE-LWKSDPK 653 (691)
T ss_pred HHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHHhCcccc-ccCCCHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999864 2235789
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.||+.+..++++|++|+||||||+|+
T Consensus 654 ~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~ 683 (691)
T cd01380 654 QLCENILTKVIEDEDKYQFGKTKIFFRAGQ 683 (691)
T ss_pred HHHHHHHHHhCCCcccEEecCceEEECcCH
Confidence 999999999999899999999999999974
No 7
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=5e-36 Score=234.67 Aligned_cols=109 Identities=28% Similarity=0.473 Sum_probs=100.4
Q ss_pred CCCcCCCCCeeEEeccCCCCCC----------------------CCccchHHHHHHHHhhchhHHHHHHhhcccccccHH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHH----------------------PKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYE 58 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~----------------------p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~ 58 (110)
|++|++|+||||||||||+.+. |+.||...|++||+|+||+|++++++.|||+|++|.
T Consensus 623 m~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~ 702 (767)
T cd01386 623 IDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLG 702 (767)
T ss_pred HHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHH
Confidence 5789999999999999999863 779999999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCCCCCC-----CCChHHHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 59 HFVSRYKLLSPRTWPFP-----LCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 59 ~F~~ry~~l~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+|+.||++|.+..++.+ ..|+++.|+.|++.+++++++|++|+||||||+|
T Consensus 703 ~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~ 758 (767)
T cd01386 703 EFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAG 758 (767)
T ss_pred HHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEeccc
Confidence 99999999998755442 2478999999999999999999999999999987
No 8
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.4e-36 Score=231.69 Aligned_cols=109 Identities=44% Similarity=0.891 Sum_probs=103.4
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+++||+|++++++.|||+|++|.+|+.||+.|.+..++....+++
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k 638 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAK 638 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999987666555789
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.||+.+++++++|++|+||||||++
T Consensus 639 ~~~~~iL~~~~~~~~~~~iGkTkVFlk~~ 667 (677)
T smart00242 639 EACEALLQSLGLDEDEYQLGKTKVFLRPG 667 (677)
T ss_pred HHHHHHHHhcCCCcccEEecCceEeECcc
Confidence 99999999999999999999999999986
No 9
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=9.3e-36 Score=230.92 Aligned_cols=110 Identities=32% Similarity=0.641 Sum_probs=102.6
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCC-CCh
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPL-CSP 79 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~-~~~ 79 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|++...+... .+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999998765433 367
Q ss_pred HHHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 80 IEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
++.|+.+++.+.+++++|++|+||||||+|+
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~ 663 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHH 663 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCH
Confidence 8899999999999999999999999999874
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.6e-35 Score=230.16 Aligned_cols=106 Identities=33% Similarity=0.678 Sum_probs=99.1
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|.|... .+.+
T Consensus 575 ~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~~~~----~~~~ 650 (692)
T cd01385 575 METLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLPKGA----QSCR 650 (692)
T ss_pred HHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCcccc----cchH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998642 3457
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+++.+++++++|++|+||||||+++
T Consensus 651 ~~~~~il~~~~~~~~~~~iGkTkVFlr~~~ 680 (692)
T cd01385 651 EDISTLLSKMKIDKRNYQIGKTKIFMRETE 680 (692)
T ss_pred HHHHHHHHhcCCCcccEEeeCceEEEcccH
Confidence 889999999999999999999999999874
No 11
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.5e-35 Score=228.56 Aligned_cols=107 Identities=31% Similarity=0.614 Sum_probs=99.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|++..++. ..+.+
T Consensus 556 ~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~-~~~~~ 634 (674)
T cd01384 556 METLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKG-SSDDK 634 (674)
T ss_pred HHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccC-CCcHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999876544 24779
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.|++.+++ ++|++|+||||||+|+
T Consensus 635 ~~~~~il~~~~~--~~~~~GktkVFlr~~~ 662 (674)
T cd01384 635 AACKKILDKMGL--KGYQIGKTKVFLRAGQ 662 (674)
T ss_pred HHHHHHHHhCCC--CCEEecCeeEEEcCCH
Confidence 999999998876 5899999999999984
No 12
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.2e-36 Score=238.52 Aligned_cols=109 Identities=38% Similarity=0.652 Sum_probs=101.1
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCC----CCC
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWP----FPL 76 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~----~~~ 76 (110)
|++|++|+||||||||||.++.|+.||..+|++||||+||+|+|+|+++|||.|++|+||..||++|.|...- .|.
T Consensus 619 m~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~ 698 (1463)
T COG5022 619 MSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWK 698 (1463)
T ss_pred HHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccch
Confidence 6789999999999999999999999999999999999999999999999999999999999999999996321 123
Q ss_pred CChHHHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 77 CSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
.+.+.+|..|+....+++..|++|.||||||+|
T Consensus 699 ~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKag 731 (1463)
T COG5022 699 EDTKNAVKSILEELVIDSSKYQIGNTKVFFKAG 731 (1463)
T ss_pred hHHHHHHHHHHHhhcCChhheeccceeEEeeCc
Confidence 467899999999999999999999999999997
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4.1e-35 Score=228.04 Aligned_cols=109 Identities=39% Similarity=0.816 Sum_probs=99.9
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+++||+|++++++.|||+|++|.+|++||+.|.+...+....+.
T Consensus 563 ~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~~~- 641 (679)
T cd00124 563 MATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSLTK- 641 (679)
T ss_pred HHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCCcH-
Confidence 5688999999999999999999999999999999999999999999999999999999999999999998765543333
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.++..+++++++|++|+||||||++.
T Consensus 642 ~~~~~il~~~~~~~~~~~vGkTkVFlr~~~ 671 (679)
T cd00124 642 KQVECLLELLGLPKDEWQVGKTKVFLKEGQ 671 (679)
T ss_pred HHHHHHHHhcCCCccCEEecCCeEEECcCH
Confidence 349999999999999999999999999873
No 14
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8.4e-35 Score=225.79 Aligned_cols=108 Identities=34% Similarity=0.631 Sum_probs=98.1
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|++...... .+.+
T Consensus 561 ~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~-~~~~ 639 (677)
T cd01387 561 VEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARP-APGD 639 (677)
T ss_pred HHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCC-CcHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998754321 2335
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.+.++++.+++++++|++|+||||||+|
T Consensus 640 ~~~~~ll~~~~~~~~~~~iG~TkVFlk~~ 668 (677)
T cd01387 640 MCVSELSRLCGVEPPMYRVGASKLFLKEH 668 (677)
T ss_pred HHHHHHHHHcCCCcccEEecceeEEEcCC
Confidence 56789999999999999999999999987
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=9.6e-35 Score=224.67 Aligned_cols=107 Identities=35% Similarity=0.630 Sum_probs=97.7
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++++++.|||+|++|.+|++||++|.+...+. ..+.+
T Consensus 539 ~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~-~~~~~ 617 (653)
T cd01379 539 LSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEE-PVSSP 617 (653)
T ss_pred HHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccccc-cCChH
Confidence 56789999999999999999999999999999999999999999999999999999999999999998764322 34679
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+|+.++++ +|++|+||||||+++
T Consensus 618 ~~~~~il~~~~~~--~~~~GktkvFlk~~~ 645 (653)
T cd01379 618 ESCALILEKAKLD--NWALGKTKVFLKYYH 645 (653)
T ss_pred HHHHHHHHhCCCC--CEEecceEEEEecCH
Confidence 9999999988774 799999999999873
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=9e-34 Score=221.00 Aligned_cols=107 Identities=38% Similarity=0.743 Sum_probs=94.5
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCC---CC
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFP---LC 77 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~---~~ 77 (110)
|++|++|++|||||||||+.+.|+.||..+|.+||+++||+|++++++.|||+|++|.+|++||+.|.+...+.. ..
T Consensus 580 ~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~ 659 (689)
T PF00063_consen 580 MDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKE 659 (689)
T ss_dssp HHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCS
T ss_pred HhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999865432 45
Q ss_pred ChHHHHHHHHhhCCCCCCCeEeCcceEEcc
Q psy10145 78 SPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107 (110)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~~G~tkVFlr 107 (110)
++++.|+.+++.+++++++|++|+||||||
T Consensus 660 ~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 660 DDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp SHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred CHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 889999999999999999999999999997
No 17
>KOG0162|consensus
Probab=99.96 E-value=3e-30 Score=197.30 Aligned_cols=108 Identities=42% Similarity=0.853 Sum_probs=105.5
Q ss_pred CCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChHH
Q psy10145 2 KNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPIE 81 (110)
Q Consensus 2 ~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~ 81 (110)
++|.+|+||||||||||+++.|+.||...|.+|+.++|+-|-++++++||.+|..|+.|.+||.+|.|..|+.|.+|+++
T Consensus 574 eTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~~~ 653 (1106)
T KOG0162|consen 574 ETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDEKQ 653 (1106)
T ss_pred HHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccccccccchHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 82 AVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 82 ~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+|+.||+...+++++|++|.||||++++
T Consensus 654 av~~il~~~~m~~~qyQmG~tkVFiKnP 681 (1106)
T KOG0162|consen 654 AVEHILRDVNMPSDQYQMGVTKVFIKNP 681 (1106)
T ss_pred HHHHHHHhcCCChhHhhccceeEEecCh
Confidence 9999999999999999999999999975
No 18
>KOG0161|consensus
Probab=99.96 E-value=1.7e-29 Score=208.71 Aligned_cols=109 Identities=33% Similarity=0.588 Sum_probs=99.8
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+|||||||.||+.+.|+.+|..+|+.||+|.||+|+|++++.|||.|++|.+|..||.++.+...+....+.+
T Consensus 651 m~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k 730 (1930)
T KOG0161|consen 651 MTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGK 730 (1930)
T ss_pred HHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999444444444345679
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
..|+.++..+.++.+.|++|.||||||+|
T Consensus 731 ~~~~~~~~~l~~d~~lyriG~tKvFfkaG 759 (1930)
T KOG0161|consen 731 KACEKILEELLLDKNLYRIGHTKVFFKAG 759 (1930)
T ss_pred hhHHHHHHHHhcccceEeecceeeeehHH
Confidence 99999999999999999999999999987
No 19
>KOG0164|consensus
Probab=99.95 E-value=3.5e-28 Score=185.68 Aligned_cols=109 Identities=52% Similarity=0.956 Sum_probs=103.7
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCC-Ch
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLC-SP 79 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~-~~ 79 (110)
|++|.+-+|+||||||||+.+.|+.||...|..|++++|++|-++++++||.+|.+|+.|+.||+++++.+||+|.. ++
T Consensus 573 v~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~d 652 (1001)
T KOG0164|consen 573 VKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSD 652 (1001)
T ss_pred HHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCCCCCCCc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999876 67
Q ss_pred HHHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 80 IEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
++.|..|++..++. .++++|+||||+|++|
T Consensus 653 kd~v~vL~e~~g~~-~d~a~G~TKIFIRsPr 682 (1001)
T KOG0164|consen 653 KDGVKVLLEHLGLA-GDVAFGRTKIFIRSPR 682 (1001)
T ss_pred hhHHHHHHHHhccc-hhhhcCceeEEEecch
Confidence 99999999999987 8999999999999985
No 20
>KOG0163|consensus
Probab=99.94 E-value=3.7e-27 Score=181.09 Aligned_cols=108 Identities=23% Similarity=0.510 Sum_probs=102.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|..|||||||||..+.+..||+..++.||+|+|++..+.+++.|||.|..|.+.+.-|+..+|+... ..|++
T Consensus 654 ldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLa--rLdpR 731 (1259)
T KOG0163|consen 654 LDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLA--RLDPR 731 (1259)
T ss_pred HHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhh--cCChH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999987532 35899
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
-.|+.++.+++++.++|++|.||||||+||
T Consensus 732 lFck~lF~aLgL~q~DfkFGlTKVFFr~GK 761 (1259)
T KOG0163|consen 732 LFCKALFQALGLDQNDFKFGLTKVFFRPGK 761 (1259)
T ss_pred HHHHHHHHHhCCCcccccccceeEeecCcc
Confidence 999999999999999999999999999997
No 21
>KOG0160|consensus
Probab=99.93 E-value=1.7e-27 Score=186.39 Aligned_cols=105 Identities=37% Similarity=0.715 Sum_probs=98.1
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|+.|.||||||||||..+.|..||..+|.+||+++|++|++++...|||.|++|.||..||++|+| . ....++.
T Consensus 556 m~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~--~~~~~~~ 632 (862)
T KOG0160|consen 556 METLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-N--DSASDDL 632 (862)
T ss_pred HHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-c--hhcccch
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 2 2234668
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
..|+.+++..+++ .|++|+||||||+||
T Consensus 633 ~~~~~il~~~~~~--~yq~g~tkif~r~gq 660 (862)
T KOG0160|consen 633 SLCKVILEKLGLE--LYQIGKTKIFLRAGQ 660 (862)
T ss_pred HHHHHHHHHhchh--ceeeeeeeeeeccch
Confidence 9999999999998 999999999999997
No 22
>KOG4229|consensus
Probab=96.28 E-value=0.00071 Score=55.99 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=83.2
Q ss_pred CcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChHHH
Q psy10145 3 NLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPIEA 82 (110)
Q Consensus 3 ~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 82 (110)
.+....+.|++|+.-|..+....|+...|..|+.+.|+.+..++...+++..++...+...+.+..+.. .+..
T Consensus 805 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~-------~~~v 877 (1062)
T KOG4229|consen 805 YLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET-------VDTV 877 (1062)
T ss_pred hhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc-------chhh
Confidence 345567889999999988888899999999999999999999999999999999999999998887732 2334
Q ss_pred HHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 83 VHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 83 ~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
.......+..+..+++.|++++|+...
T Consensus 878 ~~~~~~~~~~n~~~~~~~~~~~~~~~~ 904 (1062)
T KOG4229|consen 878 ADEEFSTLSCNADTIRLGVHVVFLLLN 904 (1062)
T ss_pred chhheeecccCccchhccceEEeeccc
Confidence 445555566678899999999998753
No 23
>KOG4229|consensus
Probab=87.29 E-value=0.16 Score=42.61 Aligned_cols=102 Identities=20% Similarity=0.048 Sum_probs=69.9
Q ss_pred CcCCCCCeeEEeccCCCCCCCCccchH-HHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChHH
Q psy10145 3 NLSSKQLHYVRCIRPNQGHHPKLFETG-LVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPIE 81 (110)
Q Consensus 3 ~l~~t~~~fIrCIkPN~~~~p~~fd~~-~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~ 81 (110)
.|.+.+.|+.|||++|..-.+.+++.. ....++...|..++....+.|+..++.+.++.+.++...-...+. ......
T Consensus 658 ~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~ 736 (1062)
T KOG4229|consen 658 ALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPR-PDLAER 736 (1062)
T ss_pred hcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCC-HHHHHH
Confidence 466778999999999999888888877 888999999999999999999999999999877665332111100 001233
Q ss_pred HHHHHHhhCCCCCCCeEeCcceEEcc
Q psy10145 82 AVHVILHGLPIPHGEFAFGRSKLFVR 107 (110)
Q Consensus 82 ~~~~ll~~~~~~~~~~~~G~tkVFlr 107 (110)
.+..++...++ +.+..+.+.++.+
T Consensus 737 ~~~~~~~~~~~--~~~~~~~~~~l~~ 760 (1062)
T KOG4229|consen 737 ARVQLLEKNAI--NMKSERLTTLLPR 760 (1062)
T ss_pred HHHHHHhhccc--cchhhhhcccccc
Confidence 44445554443 3455555555443
No 24
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=65.70 E-value=4.1 Score=21.41 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHhhcccccccHHHHHhhhhhh
Q psy10145 46 IRRSGFCYRLPYEHFVSRYKLL 67 (110)
Q Consensus 46 ~~~~gyp~r~~~~~F~~ry~~l 67 (110)
+...-=|..++..+|+.||-..
T Consensus 25 ~~~~lVP~~~se~~FW~ryF~~ 46 (51)
T smart00751 25 LYNELVPKVLSEEEFWARYFYL 46 (51)
T ss_pred HHHHHCCCCCCHHHHHHHHHHH
Confidence 3333458999999999999654
No 25
>KOG3093|consensus
Probab=64.55 E-value=10 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=29.3
Q ss_pred HHHHHhhhhhhcCCCCCCCCCChHHHHHHHHhhCCCCCCCeEe
Q psy10145 57 YEHFVSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAF 99 (110)
Q Consensus 57 ~~~F~~ry~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 99 (110)
|+.|++||+...+...|.. -.-..-++++....++++++.+
T Consensus 153 YD~flkry~~~~~~~kp~~--vgL~l~EQI~~~IPv~~~Dv~l 193 (200)
T KOG3093|consen 153 YDDFLKRYQIHAPEQKPLL--VGLCLKEQILSEIPVEEHDVKL 193 (200)
T ss_pred HHHHHHHHHHhccccCchh--hhhhhhHhhcccCCCCccceee
Confidence 8899999999987543321 2234456777788888888765
No 26
>KOG4671|consensus
Probab=56.76 E-value=7 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.9
Q ss_pred eeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhc
Q psy10145 10 HYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSG 50 (110)
Q Consensus 10 ~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~g 50 (110)
=|.+|++||. ..+..||+..+.+-++..|...+.-+.--|
T Consensus 51 Lw~~C~~~~~-~~~~pfd~~~C~s~~~~~~~~aaAAmL~~g 90 (201)
T KOG4671|consen 51 LWWSCRKPAS-THAAPFDPGGCQSTLEVDGGRAAAAMLFIG 90 (201)
T ss_pred eeeeecCcCC-cCCCCcCCccCcChhhcchHHHHHHHHHHH
Confidence 5889999999 667788888777777777766665554444
No 27
>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found. Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.
Probab=56.48 E-value=7.1 Score=21.35 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.6
Q ss_pred ccccccHHHHHhhhhhh
Q psy10145 51 FCYRLPYEHFVSRYKLL 67 (110)
Q Consensus 51 yp~r~~~~~F~~ry~~l 67 (110)
=|..++..+|+.||-..
T Consensus 35 VP~~~~e~~FW~rYf~~ 51 (62)
T PF03909_consen 35 VPSKMSEEEFWKRYFYR 51 (62)
T ss_dssp CTTTS-HHHHHHHHHCH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 39999999999999643
No 28
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=51.55 E-value=19 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=26.0
Q ss_pred CChHHHHHHHHhhCCCCCCCeEeCcceEE
Q psy10145 77 CSPIEAVHVILHGLPIPHGEFAFGRSKLF 105 (110)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~~G~tkVF 105 (110)
.+.++.|+.|.+.-+.+...|.=|+-|||
T Consensus 19 Isa~elcE~LI~~~~~~~~rysTgKpkiY 47 (78)
T PF13034_consen 19 ISARELCEYLIENGGSPNKRYSTGKPKIY 47 (78)
T ss_pred ccHHHHHHHHHHcCCCccccccCCCceeH
Confidence 36799999999999999999999999987
No 29
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=46.00 E-value=6.4 Score=25.84 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhccc
Q psy10145 7 KQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFC 52 (110)
Q Consensus 7 t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp 52 (110)
+.-|||+...=++-+.-..-+--.+.+|+|++||. .=+|.+.|-|
T Consensus 117 y~NHfiHsFel~nGkI~~~REFmNp~qq~RaLgi~-vP~IkR~giP 161 (162)
T PF03284_consen 117 YENHFIHSFELENGKIKRNREFMNPFQQLRALGIP-VPEIKREGIP 161 (162)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE-HHHHHHHTT---------TT--
T ss_pred ceeeeEEEEEeeCCEEEeehhhcCHHHHHHHcCCC-CCccccCCCC
Confidence 34588888777665554444555678999999975 4466666655
No 30
>KOG3030|consensus
Probab=43.74 E-value=14 Score=27.27 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCCCeeE-EeccCCCCCCCCccchHHHHHHHHhhc-hhHHHHHHhhccccc
Q psy10145 6 SKQLHYV-RCIRPNQGHHPKLFETGLVQHQVKYLG-LLETVRIRRSGFCYR 54 (110)
Q Consensus 6 ~t~~~fI-rCIkPN~~~~p~~fd~~~v~~Ql~~~g-i~e~~~~~~~gyp~r 54 (110)
+=.|||. +| +||-......-|....-.+..|.| -.+.++-.+..||.-
T Consensus 135 RlRP~Fl~vC-~P~~~~~~~~~~~~~yi~~~~Ctg~~~~~i~e~rkSFPSG 184 (317)
T KOG3030|consen 135 RLRPHFLDVC-QPDGTDGSTCSDSNLYIEDFICTGPDPDVVREGRKSFPSG 184 (317)
T ss_pred CCCCCeeccc-cCCccCCCCCcccccccccceeCCCCHHHHHHHHcCCCCc
Confidence 3467777 56 888876444444467778889999 888888888889843
No 31
>PHA02902 putative IMV membrane protein; Provisional
Probab=41.22 E-value=14 Score=20.79 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.3
Q ss_pred CccchHHHHHHHHhhchhHH
Q psy10145 24 KLFETGLVQHQVKYLGLLET 43 (110)
Q Consensus 24 ~~fd~~~v~~Ql~~~gi~e~ 43 (110)
..|+.++.-.|++++.-+-+
T Consensus 48 ~~F~D~lTpDQirAlHrlvT 67 (70)
T PHA02902 48 PLFKDSLTPDQIKALHRLVS 67 (70)
T ss_pred chhhccCCHHHHHHHHHHHh
Confidence 36999999999999875544
No 32
>COG4899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.55 E-value=16 Score=23.95 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=9.9
Q ss_pred CCeeEEeccCCCC
Q psy10145 8 QLHYVRCIRPNQG 20 (110)
Q Consensus 8 ~~~fIrCIkPN~~ 20 (110)
.-|||||+-|=.-
T Consensus 48 ~r~FIr~~lpIPi 60 (166)
T COG4899 48 KRHFIRSNLPIPI 60 (166)
T ss_pred cceeeeeccccee
Confidence 3499999998543
No 33
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=36.47 E-value=24 Score=23.66 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=21.6
Q ss_pred cCCCCCCCCccchHHHHHHHHhhchhHHH
Q psy10145 16 RPNQGHHPKLFETGLVQHQVKYLGLLETV 44 (110)
Q Consensus 16 kPN~~~~p~~fd~~~v~~Ql~~~gi~e~~ 44 (110)
+|+.....+---.+.+++||..+|++|..
T Consensus 110 ~P~h~~~aSg~iiR~~LQqLE~~glVek~ 138 (169)
T PTZ00095 110 APNHTVRASGKILRWICQQLEKLGLVEQG 138 (169)
T ss_pred CCCcccCCchHHHHHHHHHHHHCCCEEec
Confidence 56655555556678899999999999853
No 34
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=35.53 E-value=47 Score=15.69 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=13.9
Q ss_pred CCeeEEeccCCCCCCCCccc
Q psy10145 8 QLHYVRCIRPNQGHHPKLFE 27 (110)
Q Consensus 8 ~~~fIrCIkPN~~~~p~~fd 27 (110)
..|||.|---.....|+.+.
T Consensus 1 rchfvicttdcrrnspgtyg 20 (35)
T PF08120_consen 1 RCHFVICTTDCRRNSPGTYG 20 (35)
T ss_pred CceEEEeccccccCCCCchh
Confidence 36899987766666676553
No 35
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=33.24 E-value=21 Score=16.94 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=10.7
Q ss_pred CcCCCCCeeEEeccC
Q psy10145 3 NLSSKQLHYVRCIRP 17 (110)
Q Consensus 3 ~l~~t~~~fIrCIkP 17 (110)
..+.-++.|..||.=
T Consensus 11 lfrde~vnflfcief 25 (35)
T PF13216_consen 11 LFRDEKVNFLFCIEF 25 (35)
T ss_pred EeecCCccEEEEehh
Confidence 345677889999853
No 36
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=31.28 E-value=29 Score=16.11 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=9.0
Q ss_pred ccHHHHHhhhhhh
Q psy10145 55 LPYEHFVSRYKLL 67 (110)
Q Consensus 55 ~~~~~F~~ry~~l 67 (110)
-.|.+|++|.+.+
T Consensus 7 d~f~eFY~rlk~I 19 (28)
T PF12108_consen 7 DPFSEFYERLKEI 19 (28)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 4688888887654
No 37
>PF11107 FANCF: Fanconi anemia group F protein (FANCF); PDB: 2IQC_A.
Probab=31.23 E-value=13 Score=27.61 Aligned_cols=43 Identities=28% Similarity=0.450 Sum_probs=25.3
Q ss_pred ccHHHHHhhhhhhcCCCCCCCCCChHHHHHHHHhhCCCCCCCeEeCcc
Q psy10145 55 LPYEHFVSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRS 102 (110)
Q Consensus 55 ~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~G~t 102 (110)
++++++++||+.|+..- ...++.++.-++.+.-...+|.+|-+
T Consensus 288 ~~w~eL~erF~sL~~~~-----~~lk~~~~~~L~~~k~qDGdf~vGlS 330 (340)
T PF11107_consen 288 LSWEELIERFQSLCQGP-----PPLKEEVLTALEALKAQDGDFEVGLS 330 (340)
T ss_dssp --HHHHHHHHHHHHTS------HHHHHHHHHHHHHHHHHTT---STS-
T ss_pred CCHHHHHHHHHHHhcCC-----hhhhHHHHHHHHHhhhccCCcccchH
Confidence 68999999999998642 23477777777665443466766643
No 38
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=29.25 E-value=77 Score=21.02 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=25.1
Q ss_pred ccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhh
Q psy10145 25 LFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSR 63 (110)
Q Consensus 25 ~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~r 63 (110)
..+-.++.+||.+.-+...++-.--.==..++.++|++|
T Consensus 53 AVEfniCyNQl~Y~~~A~~v~~~l~~~f~~Wt~ddf~~r 91 (157)
T PF10862_consen 53 AVEFNICYNQLAYYLIAKCVKNELIPAFAGWTLDDFWER 91 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-SCCCTT--HHHHHHC
T ss_pred eeeehhhHHHHHHHHHHHHHhhccchhhcccCHHHHHHh
Confidence 345578899999998887776332211256888999875
No 39
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=27.94 E-value=18 Score=22.96 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=11.6
Q ss_pred eeEEeccCCCCCCCC
Q psy10145 10 HYVRCIRPNQGHHPK 24 (110)
Q Consensus 10 ~fIrCIkPN~~~~p~ 24 (110)
-.+|||.|++++.-+
T Consensus 101 CCLRCIQ~~esk~Gs 115 (146)
T COG5132 101 CCLRCIQPIESKHGS 115 (146)
T ss_pred hhHhhcCcccccCCC
Confidence 357999999998544
No 40
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial. This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.
Probab=26.78 E-value=1.1e+02 Score=21.03 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHhhc-----------hhHHHHHHhhccc-ccccHHHHHhhhhhhc
Q psy10145 25 LFETGLVQHQVKYLG-----------LLETVRIRRSGFC-YRLPYEHFVSRYKLLS 68 (110)
Q Consensus 25 ~fd~~~v~~Ql~~~g-----------i~e~~~~~~~gyp-~r~~~~~F~~ry~~l~ 68 (110)
.||...+..-++..| +++++.+.+..|| .+..++..++||++-.
T Consensus 91 ~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~L~~~~gi~~ 146 (225)
T TIGR01406 91 AFDVGFLNYELERLGPTIKKIGEFCRVIDTLAMARERFPGQRNSLDALCKRFKVDN 146 (225)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCEEEHHHHHHHHcCCCCCCHHHHHHhcCCCC
Confidence 588888877665443 4557788888887 4568899999998543
No 41
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=25.94 E-value=51 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=20.9
Q ss_pred cCCCCCCCCccchHHHHHHHHhhchhHHHH
Q psy10145 16 RPNQGHHPKLFETGLVQHQVKYLGLLETVR 45 (110)
Q Consensus 16 kPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~ 45 (110)
+|+.....+---.+.+++||...|+++...
T Consensus 86 ~P~h~~~~sg~iiR~~LqqLE~~glVek~~ 115 (150)
T PRK09333 86 RPEHFVKGSGSIIRKILQQLEKAGLVEKTK 115 (150)
T ss_pred CCCccccCccHHHHHHHHHHHHCCCeeeCC
Confidence 354444444445788999999999998543
No 42
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=24.41 E-value=25 Score=22.81 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=20.3
Q ss_pred ccCCCCCCCCccchHHHHHHHHhhchhHHH
Q psy10145 15 IRPNQGHHPKLFETGLVQHQVKYLGLLETV 44 (110)
Q Consensus 15 IkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~ 44 (110)
.+|+.....+---.+.+++||..+|+++..
T Consensus 84 ~~p~h~~~asg~iiR~~LqqLE~~glv~k~ 113 (139)
T PF01090_consen 84 VRPSHFVKASGSIIRKILQQLEKAGLVEKD 113 (139)
T ss_dssp SSCCEE--CHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHCCCEEec
Confidence 355555444545567889999999998865
No 43
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=23.59 E-value=23 Score=22.21 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=16.0
Q ss_pred eEEeccCCCCCCCCccchHHHHHHHHhhc
Q psy10145 11 YVRCIRPNQGHHPKLFETGLVQHQVKYLG 39 (110)
Q Consensus 11 fIrCIkPN~~~~p~~fd~~~v~~Ql~~~g 39 (110)
|-+|.|+.++. +.|.+||+..-
T Consensus 92 fahcqkq~dSn-------kTvpqql~dyy 113 (130)
T PF02960_consen 92 FAHCQKQRDSN-------KTVPQQLRDYY 113 (130)
T ss_pred HHHhccccccc-------ccchHHHHhhh
Confidence 45799998877 56778886543
No 44
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=22.97 E-value=1.5e+02 Score=24.27 Aligned_cols=17 Identities=12% Similarity=-0.101 Sum_probs=12.9
Q ss_pred ChHHHHHHHHhhCCCCC
Q psy10145 78 SPIEAVHVILHGLPIPH 94 (110)
Q Consensus 78 ~~~~~~~~ll~~~~~~~ 94 (110)
..++.+...|+..+|.+
T Consensus 742 ~~r~ellk~LEe~gWk~ 758 (772)
T COG1152 742 AKREELLKYLEEHGWKI 758 (772)
T ss_pred cCHHHHHHHHHHhCCcc
Confidence 34788888888888863
No 45
>PLN03181 glycosyltransferase; Provisional
Probab=22.45 E-value=1.3e+02 Score=23.37 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=31.3
Q ss_pred CeeEEeccCCCCCCCCccchHHHHHHH-HhhchhHHHHHHhhcccccc
Q psy10145 9 LHYVRCIRPNQGHHPKLFETGLVQHQV-KYLGLLETVRIRRSGFCYRL 55 (110)
Q Consensus 9 ~~fIrCIkPN~~~~p~~fd~~~v~~Ql-~~~gi~e~~~~~~~gyp~r~ 55 (110)
.||+=| +|........+....+..|+ |++...+-==++..||-++-
T Consensus 389 THF~GC-~pC~g~~n~~Y~~~~C~~~m~ra~nFaDnQvl~~yGf~h~~ 435 (453)
T PLN03181 389 THFTGC-QPCSGDHNKMYSGDSCWNGMRRALNFADNQVLRAYGFVHAD 435 (453)
T ss_pred ccccCc-cccCCCCCCCCCHHHHHHHHHHHhccchHHHHHHhCccccc
Confidence 489999 88877665678888888887 55555544444555665543
No 46
>KOG3404|consensus
Probab=21.89 E-value=48 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.4
Q ss_pred CeeEEeccCCCCCC
Q psy10145 9 LHYVRCIRPNQGHH 22 (110)
Q Consensus 9 ~~fIrCIkPN~~~~ 22 (110)
.--+|||.|++++-
T Consensus 100 LCClRCIq~~dsn~ 113 (145)
T KOG3404|consen 100 LCCLRCIQTRDSNF 113 (145)
T ss_pred eeeeeeccccccCC
Confidence 45689999999874
No 47
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins. This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon
Probab=21.33 E-value=2.3e+02 Score=17.95 Aligned_cols=41 Identities=17% Similarity=0.427 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhh----------chhHHHHHHhhccc-ccccHHHHHhhhh
Q psy10145 25 LFETGLVQHQVKYL----------GLLETVRIRRSGFC-YRLPYEHFVSRYK 65 (110)
Q Consensus 25 ~fd~~~v~~Ql~~~----------gi~e~~~~~~~gyp-~r~~~~~F~~ry~ 65 (110)
.||...+..+++.. ..+.++++.+.-|| ....+..-.++|+
T Consensus 90 ~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~~~~~~~~~~~~L~~l~~~~~ 141 (167)
T cd06131 90 SFDVGFLNAELSLLGLGKKIIDFCRVIDTLALARKKFPGKPNSLDALCKRFG 141 (167)
T ss_pred HHhHHHHHHHHHHhCCCcccccCCCceEhHHHHHHHcCCCCCCHHHHHHHCC
Confidence 46666666666542 23555555555554 3345566666665
Done!