Query psy10145
Match_columns 110
No_of_seqs 121 out of 1040
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:58:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 9.3E-38 3.2E-42 241.7 6.7 109 1-109 574-682 (697)
2 4db1_A Myosin-7; S1DC, cardiac 100.0 1.7E-37 5.9E-42 242.3 3.8 109 1-109 659-768 (783)
3 2v26_A Myosin VI; calmodulin-b 100.0 6.3E-37 2.2E-41 239.5 6.2 108 1-110 651-758 (784)
4 1w7j_A Myosin VA; motor protei 100.0 1.1E-36 3.7E-41 238.4 7.5 108 1-110 648-755 (795)
5 4anj_A Unconventional myosin-V 100.0 1.1E-36 3.6E-41 243.3 7.5 108 1-110 655-762 (1052)
6 1w9i_A Myosin II heavy chain; 100.0 2.1E-37 7.2E-42 241.4 2.7 109 1-110 642-750 (770)
7 1kk8_A Myosin heavy chain, str 100.0 5.5E-37 1.9E-41 241.0 4.7 109 1-109 657-765 (837)
8 1g8x_A Myosin II heavy chain f 100.0 4.5E-36 1.6E-40 239.5 9.2 108 1-109 642-749 (1010)
9 2dfs_A Myosin-5A; myosin-V, in 100.0 9.7E-36 3.3E-40 239.0 7.7 108 1-110 648-755 (1080)
10 1i84_S Smooth muscle myosin he 100.0 7.9E-35 2.7E-39 235.7 8.7 109 1-109 670-778 (1184)
11 2ycu_A Non muscle myosin 2C, a 100.0 1.6E-36 5.5E-41 242.0 -2.5 109 1-109 637-745 (995)
12 2iqc_A Protein FACF, fanconi a 74.6 0.56 1.9E-05 31.1 -0.2 33 53-90 153-185 (210)
13 1x3a_A Synapse associated prot 49.4 6.8 0.00023 23.0 1.3 18 51-68 67-84 (100)
14 3iz6_S 40S ribosomal protein S 32.5 19 0.00067 22.6 1.5 29 16-44 91-119 (146)
15 1v5r_A Growth-arrest-specific 31.3 14 0.00049 21.6 0.7 28 80-107 11-49 (97)
16 3noh_A Putative peptide bindin 29.6 44 0.0015 20.5 2.6 28 9-40 21-48 (139)
17 2xzm_T RPS19E; ribosome, trans 21.6 28 0.00095 22.1 0.7 28 16-43 92-119 (155)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=9.3e-38 Score=241.71 Aligned_cols=109 Identities=40% Similarity=0.770 Sum_probs=97.7
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|++||++|.|..++.+..+++
T Consensus 574 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~~k 653 (697)
T 1lkx_A 574 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAK 653 (697)
T ss_dssp HHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSHHHHTTSCSSSCC---------C
T ss_pred HHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999987777666889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.+|+.+++++++|++|+||||||+|
T Consensus 654 ~~~~~ll~~~~~~~~~~~~G~TKVF~r~~ 682 (697)
T 1lkx_A 654 QATELILQQHNIDKEEIRMGKTKVFIRNP 682 (697)
T ss_dssp HHHHHHHHTTCCCGGGEEECSSBEEESSS
T ss_pred HHHHHHHHHcCCCcCcEEeCCeeEEEeCC
Confidence 99999999999999999999999999986
No 2
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.7e-37 Score=242.30 Aligned_cols=109 Identities=37% Similarity=0.689 Sum_probs=82.1
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCC-CCh
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPL-CSP 79 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~-~~~ 79 (110)
|++|++|+||||||||||+.+.|+.||..+|++||+|+||+|++++++.|||+|++|.+|++||++|.|..++.+. .++
T Consensus 659 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~ 738 (783)
T 4db1_A 659 MTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDS 738 (783)
T ss_dssp HHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEEC-----------------------
T ss_pred HHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCcHHHHHHHHHHhCccccCCCCCCCH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999998776542 478
Q ss_pred HHHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 80 IEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
++.|+.||+.+++++++|++|+||||||+|
T Consensus 739 k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g 768 (783)
T 4db1_A 739 RKGAEKLLSSLDIDHNQYKFGHTKVFFKAG 768 (783)
T ss_dssp ---CCHHHHSSSSCGGGEEECSSEEEECTT
T ss_pred HHHHHHHHHhCCCCcCeEEECCEEEEECcC
Confidence 999999999999999999999999999987
No 3
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=6.3e-37 Score=239.52 Aligned_cols=108 Identities=22% Similarity=0.462 Sum_probs=101.7
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|++||++|+|..++ ..+++
T Consensus 651 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~--~~d~~ 728 (784)
T 2v26_A 651 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLA--RLDPR 728 (784)
T ss_dssp HHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHHHHGGGCCHHHH--TSCHH
T ss_pred HHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHHHHhhcCCcccC--CCCHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999986543 24789
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+|+.+++++++|++|+||||||+|+
T Consensus 729 ~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~ 758 (784)
T 2v26_A 729 LFCKALFKALGLNEIDYKFGLTKVFFRPGK 758 (784)
T ss_dssp HHHHHHHHHTTCCGGGEEECSSEEEECTTC
T ss_pred HHHHHHHHHcCCCcCcEEeCCceEEEcCCH
Confidence 999999999999999999999999999985
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.1e-36 Score=238.35 Aligned_cols=108 Identities=32% Similarity=0.618 Sum_probs=102.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|++||++|.|...+.. +++
T Consensus 648 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~--d~k 725 (795)
T 1w7j_A 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS--DRK 725 (795)
T ss_dssp HHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCS--CHH
T ss_pred HHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCC--CHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999765442 889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+|+.+++++++|++|+||||||+|+
T Consensus 726 ~~~~~il~~~~~~~~~~~~G~TKVF~r~~~ 755 (795)
T 1w7j_A 726 QTCKNVLEKLILDKDKYQFGKTKIFFRAGQ 755 (795)
T ss_dssp HHHHHHHHHHCCCGGGEEECSSEEEECTTH
T ss_pred HHHHHHHHHhCCCccceEEcCceEEEchhH
Confidence 999999999999999999999999999873
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-36 Score=243.26 Aligned_cols=108 Identities=22% Similarity=0.459 Sum_probs=102.4
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|++||++|+|..++. .+++
T Consensus 655 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~eF~~RY~~L~~~~~~~--~d~k 732 (1052)
T 4anj_A 655 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLAR--LDPR 732 (1052)
T ss_dssp HHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHHHHHHHHTTSCSSGGG--SCHH
T ss_pred HHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHHHHHHHHHhCcccccC--CCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999976543 5889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.||+.+++++++|++|+||||||+|.
T Consensus 733 ~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~ 762 (1052)
T 4anj_A 733 LFCKALFKALGLNEIDYKFGLTKVFFRPGK 762 (1052)
T ss_dssp HHHHHHHHHTSCCGGGEEECSSEEEECTTC
T ss_pred HHHHHHHHHcCcCcccEEecCCEEeeCcCH
Confidence 999999999999999999999999999884
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.1e-37 Score=241.36 Aligned_cols=109 Identities=38% Similarity=0.644 Sum_probs=71.9
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|++||+|+||+|++++++.|||+|++|.+|++||++|.| .++.+..+.+
T Consensus 642 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k 720 (770)
T 1w9i_A 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQ 720 (770)
T ss_dssp HHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC---------------------
T ss_pred HHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999 6665445889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+|+.+++++++|++|+||||||+|.
T Consensus 721 ~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~ 750 (770)
T 1w9i_A 721 KATDAVLKHLNIDPEQFRFGITKIFFRAGQ 750 (770)
T ss_dssp ---------------CCCCCSSEEEECTTT
T ss_pred HHHHHHHHhcCCCcccEEeCCeeEEecccH
Confidence 999999999999999999999999999974
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.5e-37 Score=240.99 Aligned_cols=109 Identities=39% Similarity=0.676 Sum_probs=97.3
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|+.||++|.+..++.+..+++
T Consensus 657 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k 736 (837)
T 1kk8_A 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGK 736 (837)
T ss_dssp HHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHH
T ss_pred HHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHHHHhcccccccCCCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999987766556899
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.+|+.+++++++|++|+||||||+|
T Consensus 737 ~~~~~ll~~~~~~~~~~~~G~TKVF~r~~ 765 (837)
T 1kk8_A 737 TVSEKILAGLQMDPAEYRLGTTKVFFKAG 765 (837)
T ss_dssp HHHHHHHHHHTCCGGGEEECSSEEEECTT
T ss_pred HHHHHHHHHcCCCccceeecCEEEEehhh
Confidence 99999999999999999999999999987
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=4.5e-36 Score=239.51 Aligned_cols=108 Identities=37% Similarity=0.639 Sum_probs=103.2
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|+.||++|.|. ++.+..+.+
T Consensus 642 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~ 720 (1010)
T 1g8x_A 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQ 720 (1010)
T ss_dssp HHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHH
T ss_pred HHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999998 665556899
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.+++.+++++++|++|+||||||+|
T Consensus 721 ~~~~~ll~~~~~~~~~~~~G~tkVF~r~~ 749 (1010)
T 1g8x_A 721 KATDAVLKHLNIDPEQYRFGITKIFFRAG 749 (1010)
T ss_dssp HHHHHHHHHTTCCGGGEEECSSEEEECTT
T ss_pred HHHHHHHHHcCCCccceeehhhhhhhccc
Confidence 99999999999999999999999999987
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=9.7e-36 Score=238.97 Aligned_cols=108 Identities=32% Similarity=0.618 Sum_probs=102.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|+.||++|.|...+.. +++
T Consensus 648 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~--d~k 725 (1080)
T 2dfs_A 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS--DRK 725 (1080)
T ss_dssp HHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCS--SHH
T ss_pred HHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCC--ChH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999765442 889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccCC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g~ 110 (110)
+.|+.+|..+++++++|++|+||||||+|+
T Consensus 726 ~~~~~il~~~~~~~~~~~~G~TKVF~r~g~ 755 (1080)
T 2dfs_A 726 QTCKNVLEKLILDKDKYQFGKTKIFFRAGQ 755 (1080)
T ss_dssp HHHHHHHTTTSCCGGGEEECSSEEEECTTH
T ss_pred HHHHHHHHHhcCChhhheeccccchhccch
Confidence 999999999999999999999999999973
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=7.9e-35 Score=235.71 Aligned_cols=109 Identities=29% Similarity=0.561 Sum_probs=104.0
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|+.||++|.|..+|.+..+.+
T Consensus 670 ~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k 749 (1184)
T 1i84_S 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGK 749 (1184)
T ss_dssp HHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHH
T ss_pred HHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999987776556889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.+|..++++++.|++|+||||||+|
T Consensus 750 ~~~~~lL~~l~l~~~~~~iG~TKVF~r~g 778 (1184)
T 1i84_S 750 QACILMIKALELDPNLYRIGQSKIFFRTG 778 (1184)
T ss_dssp HHHHHHHHTTTCCTTTCCBCSSEEEECTT
T ss_pred HHHHHHHHHcCCCccceeEcCeEEEEech
Confidence 99999999999999999999999999987
No 11
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.6e-36 Score=242.04 Aligned_cols=109 Identities=32% Similarity=0.584 Sum_probs=103.6
Q ss_pred CCCcCCCCCeeEEeccCCCCCCCCccchHHHHHHHHhhchhHHHHHHhhcccccccHHHHHhhhhhhcCCCCCCCCCChH
Q psy10145 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLSPRTWPFPLCSPI 80 (110)
Q Consensus 1 m~~l~~t~~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi~e~~~~~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 80 (110)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++++++.|||+|++|.+|+.||++|.|..+|.+..+.+
T Consensus 637 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~ 716 (995)
T 2ycu_A 637 MATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGK 716 (995)
T ss_dssp HHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSC
T ss_pred HHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999987776556889
Q ss_pred HHHHHHHhhCCCCCCCeEeCcceEEcccC
Q psy10145 81 EAVHVILHGLPIPHGEFAFGRSKLFVRSP 109 (110)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~~G~tkVFlr~g 109 (110)
+.|+.+|..+++++++|++|+||||||+|
T Consensus 717 ~~~~~ll~~~~~~~~~~~~G~tkVF~r~~ 745 (995)
T 2ycu_A 717 QACEKMIQALELDPNLYRVGQSKIFFRAG 745 (995)
T ss_dssp CSCCCSCCCSSEEESSEEEESSCTTHHHH
T ss_pred HHHHHHHHHcCCChhheeecceEEEEecc
Confidence 99999999999999999999999999976
No 12
>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat, DNA-damage, complex subunit, protein binding; 2.40A {Homo sapiens}
Probab=74.56 E-value=0.56 Score=31.15 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred ccccHHHHHhhhhhhcCCCCCCCCCChHHHHHHHHhhC
Q psy10145 53 YRLPYEHFVSRYKLLSPRTWPFPLCSPIEAVHVILHGL 90 (110)
Q Consensus 53 ~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~~ll~~~ 90 (110)
..++++||+.||++|+... ...++.++..|+++
T Consensus 153 ~~lpweeL~~Rf~sLcqa~-----p~Lkeev~taLksl 185 (210)
T 2iqc_A 153 QDVPWEELHNRFQSLCQAP-----PPLKDKVLTALETC 185 (210)
T ss_dssp TCCCHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCC-----hhhHHHHHHHHHHH
Confidence 3489999999999999742 35678887777665
No 13
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=49.36 E-value=6.8 Score=22.99 Aligned_cols=18 Identities=17% Similarity=-0.024 Sum_probs=15.3
Q ss_pred ccccccHHHHHhhhhhhc
Q psy10145 51 FCYRLPYEHFVSRYKLLS 68 (110)
Q Consensus 51 yp~r~~~~~F~~ry~~l~ 68 (110)
=|..+++.+|+.||-...
T Consensus 67 VP~~v~e~~FW~rYFyrv 84 (100)
T 1x3a_A 67 VPKLVKEEVFWRNYFYRV 84 (100)
T ss_dssp TTTTSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 589999999999997543
No 14
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.46 E-value=19 Score=22.61 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=20.9
Q ss_pred cCCCCCCCCccchHHHHHHHHhhchhHHH
Q psy10145 16 RPNQGHHPKLFETGLVQHQVKYLGLLETV 44 (110)
Q Consensus 16 kPN~~~~p~~fd~~~v~~Ql~~~gi~e~~ 44 (110)
+|+.....+---.+.+++||..+|++|..
T Consensus 91 ~P~h~~~asg~iiR~~LQqLE~~g~Vek~ 119 (146)
T 3iz6_S 91 RPPHFCKSSGAISRNILQQLQKMGIIDVD 119 (146)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCcccCCCcHHHHHHHHHHHHCCCeEec
Confidence 55555444555567899999999999854
No 15
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=31.27 E-value=14 Score=21.55 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCC-----------CCCCCeEeCcceEEcc
Q psy10145 80 IEAVHVILHGLP-----------IPHGEFAFGRSKLFVR 107 (110)
Q Consensus 80 ~~~~~~ll~~~~-----------~~~~~~~~G~tkVFlr 107 (110)
.++++.+.+... +.+..|.||.+++|.|
T Consensus 11 D~~V~~iv~~~~c~c~~~~~v~rv~eGkYr~G~k~i~vR 49 (97)
T 1v5r_A 11 DDAVKRISEDPPCKCPTKFCVERLSQGRYRVGEKILFIR 49 (97)
T ss_dssp HHHHHHHHTSSCCCSSSCCCEEEEETTEEEETTEEEEEE
T ss_pred HHHHHHHhcCCCccccCCCceEEeCCCcEEeCCeEEEEE
Confidence 456667666422 2367899999999987
No 16
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=29.63 E-value=44 Score=20.46 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.1
Q ss_pred CeeEEeccCCCCCCCCccchHHHHHHHHhhch
Q psy10145 9 LHYVRCIRPNQGHHPKLFETGLVQHQVKYLGL 40 (110)
Q Consensus 9 ~~fIrCIkPN~~~~p~~fd~~~v~~Ql~~~gi 40 (110)
=.||.||.|-.. .++..-.++||+.+-+
T Consensus 21 G~Yl~~iNp~ld----~~~~~~~R~~Lka~~~ 48 (139)
T 3noh_A 21 GSYIFCMNPLLD----KLSDEDIREQLKAFVT 48 (139)
T ss_dssp SEEEEEECTTSG----GGCCHHHHHHHHHHHT
T ss_pred cceEEEeccccC----ccccHHHHHHHHHHhc
Confidence 379999999544 4777888999877643
No 17
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=21.60 E-value=28 Score=22.13 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=19.3
Q ss_pred cCCCCCCCCccchHHHHHHHHhhchhHH
Q psy10145 16 RPNQGHHPKLFETGLVQHQVKYLGLLET 43 (110)
Q Consensus 16 kPN~~~~p~~fd~~~v~~Ql~~~gi~e~ 43 (110)
+|+.....+---.+.+++||..+|++|.
T Consensus 92 ~P~h~~~asg~iiR~~LQqLE~~g~Vek 119 (155)
T 2xzm_T 92 LRNKHQACHGKILRWALKSLEDLKIIRK 119 (155)
T ss_dssp SCCEECCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcccCCCcHHHHHHHHHHHHCCCEee
Confidence 3444433444456788999999999985
Done!