RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10145
(110 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 163 bits (415), Expect = 9e-49
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L + HYVRCI+ N + + V+HQV+YLGLLE VR+RR+GF R+ Y F
Sbjct: 574 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRF 633
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110
+RYK+L +TWP + +A +IL I E G++K+F+R+P
Sbjct: 634 YNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPT 683
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 145 bits (368), Expect = 5e-42
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L S ++RCI+PN FE + Q++ G++ + + + GF R +
Sbjct: 651 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 710
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVR 107
+ YK P P + L + ++ FG +K+F R
Sbjct: 711 YNMYKKYMPDKLARL--DPRLFCKALFKALGLNEIDYKFGLTKVFFR 755
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 144 bits (366), Expect = 7e-42
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M LS+ +VRCI PN E LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 637 MATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEF 696
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
RY++L+P P +A ++ L + + G+SK+F R+
Sbjct: 697 RQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAG 745
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 144 bits (365), Expect = 9e-42
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
V RY LL+P +A +L L I +F FG +K+F R+
Sbjct: 702 VKRYYLLAPNVPRDAE-DSQKATDAVLKHLNIDPEQFRFGITKIFFRAG 749
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 142 bits (361), Expect = 4e-41
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
V RY LL+P +A +L L I ++ FG +K+F R+
Sbjct: 702 VKRYYLLAPNVPRDAE-DSQKATDAVLKHLNIDPEQYRFGITKIFFRAG 749
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 141 bits (357), Expect = 1e-40
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P + + LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 659 MTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDF 718
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+P P + +L L I H ++ FG +K+F ++
Sbjct: 719 RQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKA 767
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 139 bits (353), Expect = 4e-40
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 729
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 730 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT 777
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 137 bits (348), Expect = 2e-39
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 707
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110
SRY++L + + +L L + ++ FG++K+F R+ +
Sbjct: 708 FSRYRVLMKQKDVLS--DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQ 755
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 137 bits (346), Expect = 4e-39
Identities = 43/108 (39%), Positives = 58/108 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 716
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRS 108
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 717 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 764
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 136 bits (344), Expect = 7e-39
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 707
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110
SRY++L + + +L L + ++ FG++K+F R+ +
Sbjct: 708 FSRYRVLMKQKDVLS--DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQ 755
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia
coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A*
3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Length = 202
Score = 28.7 bits (65), Expect = 0.27
Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 30/124 (24%)
Query: 1 MKNLSSKQLHYVRCIR---PNQGHHPKLFE---------TGLVQHQVKYLGLLETVRIRR 48
MK L+++Q IR G P E + +K L R
Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL--------AR 52
Query: 49 SGFCYRLPYEHFVSRYKLLSPRTWPFPLC------SPIEAVHVILHGLPIPHGEFAFGRS 102
G + +LL PL P+ A I + F +
Sbjct: 53 KGVIEIVSGASRG--IRLLQEEEEGLPLVGRVAADEPLLAQQHIEGHYQVD--PSLFKPN 108
Query: 103 KLFV 106
F+
Sbjct: 109 ADFL 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.0
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 59 HFVSRYKLLSP-RTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKL 104
+ VSR + R L A +V++ G+ G G++ +
Sbjct: 129 YNVSRLQPYLKLRQA---LLELRPAKNVLIDGVL---G---SGKTWV 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.5
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 62 SRYKLLSPRTWP-FPLCSPIE 81
+ KL + + P + + +E
Sbjct: 27 ASLKLYADDSAPALAIKATME 47
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 25.3 bits (55), Expect = 3.8
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 21 HHPKLFETGLVQHQVKYLGLLETVRIRRSGFC 52
G V+YLG +E R C
Sbjct: 32 ADEDAVRKGTCSFPVRYLGHVEVEESRGMHVC 63
>3sqi_A KLLA0E03807P; DNA recombinase, DNA binding, DNA binding protein-DNA
C; HET: DNA; 2.82A {Kluyveromyces lactis} PDB: 3t79_A*
Length = 534
Score = 25.6 bits (55), Expect = 4.8
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 13 RCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHFVSRYKLLS 68
++P H LF T L LL +V + YR+ H + L
Sbjct: 313 TKLQPCPQVHVHLFPTDLPPDIQAVFDLLNSVLVTSLPLLYRVFPTHDIFLDPSLK 368
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.145 0.475
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,738,576
Number of extensions: 91607
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 22
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)