RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10145
(110 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 140 bits (353), Expect = 9e-41
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + ++VRCI PN + LV Q++ G+LE +RI R GF R+ ++ F
Sbjct: 592 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEF 651
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
RY++L+ P +A +++ L + + G+SK+F R+
Sbjct: 652 RQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTG 700
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 139 bits (351), Expect = 1e-40
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
+ L + HYVRCI+ N + + V+HQV+YLGLLE VR+RR+GF R+ Y F
Sbjct: 566 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRF 625
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110
+RYK+L +TWP + +A +IL I E G++K+F+R+P
Sbjct: 626 YNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPT 675
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 132 bits (334), Expect = 4e-38
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M L + H+VRCI PN P E +V Q++ G+LE +RI R GF R+ Y F
Sbjct: 595 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 654
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
V RY LL+P +A +L L I ++ FG +K+F R+
Sbjct: 655 VKRYYLLAPNVPRDAE-DSQKATDAVLKHLNIDPEQYRFGITKIFFRAG 702
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 130 bits (329), Expect = 2e-37
Identities = 43/109 (39%), Positives = 58/109 (53%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
MKNL S H+VRCI PN+ P L + LV HQ++ G+LE +RI R GF RL Y F
Sbjct: 609 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEF 668
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
RY +L+P P IL GL + E+ G +K+F ++
Sbjct: 669 KQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAG 717
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 129 bits (324), Expect = 8e-37
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M+ L++ HYVRCI+PN P F+ Q++ G+LET+RI +GF R Y+ F
Sbjct: 586 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEF 645
Query: 61 VSRYKLLSPRTWPFPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSPR 110
SRY++L + + +L L + ++ FG++K+F R+ +
Sbjct: 646 FSRYRVLMKQKDVLS--DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQ 693
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 126 bits (317), Expect = 9e-36
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1 MKNLSSKQLHYVRCIRPNQGHHPKLFETGLVQHQVKYLGLLETVRIRRSGFCYRLPYEHF 60
M NL S H+VRCI PN+ P E LV HQ++ G+LE +RI R GF R+ Y F
Sbjct: 612 MANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADF 671
Query: 61 VSRYKLLSPRTWP-FPLCSPIEAVHVILHGLPIPHGEFAFGRSKLFVRSP 109
RY++L+ P +A +L G + H ++AFG +K+F ++
Sbjct: 672 KQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAG 721
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 25.8 bits (56), Expect = 1.2
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 16 RPNQG--HHPKLFETGLVQHQVKYLGLLETVRIRRS 49
+P +G H V + V+Y+G +E ++ R+
Sbjct: 17 KPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRA 52
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 25.4 bits (55), Expect = 1.3
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 16 RPNQ-GHHPKLFETGLVQHQVKYLGLLETVRIRRSGFC 52
RP+Q + TG VKYLG +E R C
Sbjct: 10 RPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHIC 47
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 24.2 bits (52), Expect = 3.2
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 21 HHPKLFETGLVQHQVKYLGLLETVRIRRSGFC 52
+ + VKYLG +E R C
Sbjct: 5 ADEEAVRSATCSFSVKYLGCVEVFESRGMQVC 36
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp.,
strain TB-90 [TaxId: 1409]}
Length = 152
Score = 23.7 bits (51), Expect = 4.9
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 24/62 (38%)
Query: 58 EHFVSRYKLLSPRTWPFPLCSPIEAVHV-----------ILHGLPIPHGEFAFGRSKLFV 106
F+ +Y S IE + + + E F +S+
Sbjct: 95 TSFLKKY-------------SHIEKISLIGEEIPFETTFAVKNGNRAASELVFKKSRNEY 141
Query: 107 RS 108
+
Sbjct: 142 AT 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.145 0.475
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,956
Number of extensions: 19005
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 15
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.3 bits)