BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10146
         (1902 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana
           GN=AGL92 PE=1 SV=1
          Length = 464

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 79  LEEVISKFTDHFVPKKNLTYVRHKFFTRDQQEGES-------VENYVAVLNKMSYDCEFE 131
           ++EVIS+F +    +++ T + H+ F RDQ   E         EN    L    +DC   
Sbjct: 62  VQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGG 121

Query: 132 KLREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESV 180
           K+ E     + LQ    +S  TD ++ + N    R KF T   +   SV
Sbjct: 122 KMSEQQYGARDLQ---DLSLFTDQYLNQLN---ARKKFLTEYGESSSSV 164


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,753,066
Number of Sequences: 539616
Number of extensions: 29857520
Number of successful extensions: 123117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 120695
Number of HSP's gapped (non-prelim): 1109
length of query: 1902
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1770
effective length of database: 120,340,147
effective search space: 213002060190
effective search space used: 213002060190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)