Query psy10146
Match_columns 1902
No_of_seqs 216 out of 445
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 19:01:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3akb_A Putative calcium bindin 21.6 1.4E+02 0.0048 26.7 5.6 68 18-90 18-85 (166)
2 3g1g_A GAG polyprotein, capsid 19.7 1.2E+02 0.0043 29.3 4.9 75 169-260 3-79 (87)
3 3ds4_A HIV-1 capsid protein; H 16.9 1.3E+02 0.0044 28.2 4.3 72 169-257 5-77 (86)
4 3g21_A GAG polyprotein, capsid 14.0 2.1E+02 0.0071 27.3 4.8 35 169-203 4-39 (77)
5 3g21_A GAG polyprotein, capsid 14.0 1.3E+02 0.0043 28.7 3.4 41 103-143 4-45 (77)
6 1nya_A Calerythrin; EF-hand, m 11.6 5.2E+02 0.018 23.3 6.8 79 76-158 74-168 (176)
7 1eoq_A GAG polyprotein capsid 11.3 7.2E+02 0.025 24.5 7.8 61 19-88 7-71 (96)
8 3g1g_A GAG polyprotein, capsid 10.7 1.6E+02 0.0054 28.6 3.0 41 103-143 3-44 (87)
9 3tir_A ROUS sarcoma virus caps 8.2 3.1E+02 0.01 29.8 4.5 36 168-203 152-188 (226)
10 3ds4_A HIV-1 capsid protein; H 8.0 2.1E+02 0.0072 26.8 2.7 27 102-128 4-30 (86)
No 1
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=21.64 E-value=1.4e+02 Score=26.69 Aligned_cols=68 Identities=7% Similarity=-0.028 Sum_probs=34.4
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhChhhHHHhhcCCCCCCCCCccccHHHHHHHHhccc
Q psy10146 18 DAADAWKLWLQRFTIFLRANGHDNAAPEKQVAMFLHLIGEECLHIFNSFGLNDKLDNKSLQLEEVISKFTDHF 90 (1902)
Q Consensus 18 DLAEnWErWKQRFEnYFeANGITKKPDERKVAILLhVIGPEgYEILRSLpfPEkkpPEDKTYDELIEKLEEHF 90 (1902)
+..-++..+...+...+.+.+.. +....+..++....+....++..+..... ..-++++.+..+....
T Consensus 18 dG~i~~~E~~~~l~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~f~~~D~d~~---g~i~~~ef~~~~~~~~ 85 (166)
T 3akb_A 18 NGHIDRSDFSGAAKAMLAEFGVA--ARSDRGQALYGGAEALWQGLAGIADRDGD---QRITREEFVTGAVKRL 85 (166)
T ss_dssp SSEECHHHHHHHHHHHHHHHTCC--TTSHHHHHHHHHHHHHHHHHHHHHCTTSS---SCEEHHHHHHTHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHHhCCCCC---CcCcHHHHHHHHHHHh
Confidence 55566666666666655555553 23333333333333333344454433332 3467777776665543
No 2
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=19.66 E-value=1.2e+02 Score=29.27 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=47.9
Q ss_pred cccccccCCCCHHHHHHHHHHhhhcCCCc-hhhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCH-
Q psy10146 169 FFTRDQQEGESVENYVAVLNKMSYDCEFE-KLREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESV- 246 (1902)
Q Consensus 169 FySRkQEpGESIDQFVAELRQLAESCEFG-DLEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTL- 246 (1902)
|-...|.|.|++.+||.+|-.-...+.-. +..+-|++ .+..--.+...|+=|+.-++ ++++
T Consensus 3 ~tdI~QGPkEPF~dfVdRl~kal~~eq~~~~vK~~m~~---------------tLlvQNANpdCk~Il~~~~~--~~~~~ 65 (87)
T 3g1g_A 3 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVII---------------DCFRQKSQPDIQQLIRTAPS--TLTTP 65 (87)
T ss_dssp TTTCCCCTTCCHHHHHHHHHHHHHHSSSCGGGHHHHHH---------------HHHHHHSCHHHHHHHHTSCT--TCCSH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHH---------------HHHHHhcCHHHHHHHHhCCC--CCCCh
Confidence 45678999999999999998887777554 34444422 12222445666666666653 4666
Q ss_pred HHHHHHHHHhcchh
Q psy10146 247 ENYVAVLNKMSYDC 260 (1902)
Q Consensus 247 EKAVDIArAmElAc 260 (1902)
+++|.....-+-||
T Consensus 66 ~e~Ik~~l~~~~~~ 79 (87)
T 3g1g_A 66 GEIIKYVLDRQKTA 79 (87)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhcC
Confidence 88888776666555
No 3
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=16.88 E-value=1.3e+02 Score=28.23 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=44.5
Q ss_pred cccccccCCCCHHHHHHHHHHhhhcCCCch-hhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCHH
Q psy10146 169 FFTRDQQEGESVENYVAVLNKMSYDCEFEK-LREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESVE 247 (1902)
Q Consensus 169 FySRkQEpGESIDQFVAELRQLAESCEFGD-LEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTLE 247 (1902)
|....|.+.|++.+||.+|-...+.+.-.. ..+-|+ +.|.++ ..+...|.-|..-. .+.+|+
T Consensus 5 ~~~i~QGpkEpf~dfv~rl~k~l~~e~~~~~vK~~m~--~tL~~q-------------NAnp~Ck~il~~l~--~~~~le 67 (86)
T 3ds4_A 5 ILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMT--ETLLVQ-------------NANPDCKTILKALG--PGATSE 67 (86)
T ss_dssp GGGCCCCTTSCHHHHHHHHHHHHHHC-CCHHHHHHHH--HHHHHH-------------TSCHHHHHHHHHHC--TTCCHH
T ss_pred hhccccCCCCcHHHHHHHHHHHHHHhccchhHHHHHH--HhHHHH-------------hccHHHHHHHHccC--CCCCHH
Confidence 566789999999999999988887665533 333331 123333 33444443222212 137899
Q ss_pred HHHHHHHHhc
Q psy10146 248 NYVAVLNKMS 257 (1902)
Q Consensus 248 KAVDIArAmE 257 (1902)
+.++.|+.+.
T Consensus 68 e~~~aC~~vG 77 (86)
T 3ds4_A 68 EMMTACQGVG 77 (86)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHccccC
Confidence 9998887765
No 4
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=13.99 E-value=2.1e+02 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=26.4
Q ss_pred cccccccCCCCHHHHHHHHHHhhhcCCCc-hhhhhh
Q psy10146 169 FFTRDQQEGESVENYVAVLNKMSYDCEFE-KLREDL 203 (1902)
Q Consensus 169 FySRkQEpGESIDQFVAELRQLAESCEFG-DLEDEL 203 (1902)
|-...|.|.|++.+||.+|-.-...+.-. +..+-|
T Consensus 4 ~tdI~QGPkEPF~dfVdRl~kal~~e~~~~~vk~~m 39 (77)
T 3g21_A 4 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPV 39 (77)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 55678999999999999998877666554 344444
No 5
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=13.96 E-value=1.3e+02 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred eecccCCCCCCHHHHHHHHHhhhcCCCCC-chhhHhhhhcch
Q psy10146 103 FFTRDQQEGESVENYVAVLNKMSYDCEFE-KLREDLLDNKSL 143 (1902)
Q Consensus 103 FnSRKQQPGESIDQFVTRLRKLAK~CEFG-DLLDELLRDRIL 143 (1902)
|-..+|+|.|++.+||.+|........-. +..+.|++.-++
T Consensus 4 ~tdI~QGPkEPF~dfVdRl~kal~~e~~~~~vk~~m~~tLl~ 45 (77)
T 3g21_A 4 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFR 45 (77)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 45678999999999999998766544433 344555554433
No 6
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=11.58 E-value=5.2e+02 Score=23.28 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=37.1
Q ss_pred cccHHHHHHHHhcccCCccc-------eeeeeeeeecccCC--CCCCHHHHHHHHHhhhcCCCCCc-hhhHhhh------
Q psy10146 76 SLQLEEVISKFTDHFVPKKN-------LTYVRHKFFTRDQQ--EGESVENYVAVLNKMSYDCEFEK-LREDLLD------ 139 (1902)
Q Consensus 76 DKTYDELIEKLEEHFSPKKN-------VIyERYKFnSRKQQ--PGESIDQFVTRLRKLAK~CEFGD-LLDELLR------ 139 (1902)
.-++++.+..+......... .-.-+..|...... --=+.++|...++.+. ... ..+.+++
T Consensus 74 ~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g----~~~~~~~~~~~~~D~d~ 149 (176)
T 1nya_A 74 SLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG----MSKAEAAEAFNQVDTNG 149 (176)
T ss_dssp CBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTT----CCHHHHHHHHHHHCTTC
T ss_pred eEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhC----CCHHHHHHHHHHhCCCC
Confidence 56777777777665543321 00011223222221 1235666666666542 211 1222222
Q ss_pred hcchhhHHHHHhhhccccC
Q psy10146 140 NKSLQLEEVISKLTDHFVP 158 (1902)
Q Consensus 140 DRILQYDEIIEKLEEHFSP 158 (1902)
|..++|++.+..+...+.|
T Consensus 150 dg~i~~~ef~~~~~~~~~~ 168 (176)
T 1nya_A 150 NGELSLDELLTAVRDFHFG 168 (176)
T ss_dssp SSEEEHHHHHHHHSCCSSS
T ss_pred CCCCcHHHHHHHHHHHhcC
Confidence 3456677777766666543
No 7
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=11.33 E-value=7.2e+02 Score=24.48 Aligned_cols=61 Identities=8% Similarity=0.156 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhh----ChhhHHHhhcCCCCCCCCCccccHHHHHHHHhc
Q psy10146 19 AADAWKLWLQRFTIFLRANGHDNAAPEKQVAMFLHLI----GEECLHIFNSFGLNDKLDNKSLQLEEVISKFTD 88 (1902)
Q Consensus 19 LAEnWErWKQRFEnYFeANGITKKPDERKVAILLhVI----GPEgYEILRSLpfPEkkpPEDKTYDELIEKLEE 88 (1902)
..+.|+.|..||-.-+.+... +.+.|..+..+++ .|++..|++.++.|. .|++++++-+..
T Consensus 7 PkEPFrDyVdRf~kalraeqa---~~~vK~wmt~tLlvQNANPdCk~iLkal~g~~------~tl~em~~yi~~ 71 (96)
T 1eoq_A 7 PSESFVDFANRLIKAVEGSDL---PPSARAPVIIDCFRQKSQPDIQQLIRTAPSTL------TTPGEIIKYVLD 71 (96)
T ss_dssp TTCCHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHSCHHHHHHHHHCCSCC------CSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhc---cHhHhhhhHHHHHHHhcCHHHHHHHHccCCCC------CCHHHHHHHHHH
Confidence 458899999999999998876 4666666666666 678999999986554 477777765543
No 8
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=10.69 E-value=1.6e+02 Score=28.59 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred eecccCCCCCCHHHHHHHHHhhhcCCCCC-chhhHhhhhcch
Q psy10146 103 FFTRDQQEGESVENYVAVLNKMSYDCEFE-KLREDLLDNKSL 143 (1902)
Q Consensus 103 FnSRKQQPGESIDQFVTRLRKLAK~CEFG-DLLDELLRDRIL 143 (1902)
|-..+|+|.|++.+||.+|......+.-. +..+.|+++-++
T Consensus 3 ~tdI~QGPkEPF~dfVdRl~kal~~eq~~~~vK~~m~~tLlv 44 (87)
T 3g1g_A 3 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFR 44 (87)
T ss_dssp TTTCCCCTTCCHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 44568999999999999998766555443 344555554433
No 9
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=8.21 E-value=3.1e+02 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.3
Q ss_pred ccccccccCCCCHHHHHHHHHHhhhcCCCc-hhhhhh
Q psy10146 168 KFFTRDQQEGESVENYVAVLNKMSYDCEFE-KLREDL 203 (1902)
Q Consensus 168 KFySRkQEpGESIDQFVAELRQLAESCEFG-DLEDEL 203 (1902)
.|-...|.+.|++.+||.+|-.-+..+.-. +..+-|
T Consensus 152 ~~~~I~QGp~Epf~dfv~rl~~a~~~~~~~~~~~~~~ 188 (226)
T 3tir_A 152 PWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPV 188 (226)
T ss_dssp CGGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred chhHhhcCCCCcHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 366789999999999999999888776443 244443
No 10
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=8.03 E-value=2.1e+02 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.3
Q ss_pred eeecccCCCCCCHHHHHHHHHhhhcCC
Q psy10146 102 KFFTRDQQEGESVENYVAVLNKMSYDC 128 (1902)
Q Consensus 102 KFnSRKQQPGESIDQFVTRLRKLAK~C 128 (1902)
.|...+|++.|++.+||.+|......+
T Consensus 4 s~~~i~QGpkEpf~dfv~rl~k~l~~e 30 (86)
T 3ds4_A 4 SILDIRQGPKEPFRDYVDRFYKTLRAE 30 (86)
T ss_dssp CGGGCCCCTTSCHHHHHHHHHHHHHHC
T ss_pred hhhccccCCCCcHHHHHHHHHHHHHHh
Confidence 366788999999999999998766544
Done!