Query psy10146
Match_columns 1902
No_of_seqs 216 out of 445
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 19:02:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qrjb1 a.28.3.1 (B:131-214) H 48.6 10 0.00076 33.5 5.2 70 169-254 3-73 (84)
2 d1qrjb1 a.28.3.1 (B:131-214) H 35.0 13 0.00093 33.0 3.5 25 103-127 3-27 (84)
3 d1a8oa_ a.28.3.1 (A:) HIV caps 29.9 28 0.002 29.5 4.7 66 172-254 3-69 (70)
4 d2eiaa1 a.28.3.1 (A:148-222) E 28.9 17 0.0012 31.3 3.2 69 169-254 3-72 (75)
5 d2eiaa1 a.28.3.1 (A:148-222) E 15.5 39 0.0028 28.9 2.6 26 103-128 3-28 (75)
6 d1a8oa_ a.28.3.1 (A:) HIV caps 13.5 64 0.0047 27.1 3.4 26 106-131 3-28 (70)
7 d1d1da1 a.28.3.1 (A:151-230) R 13.0 1.2E+02 0.009 26.2 5.2 70 170-256 4-75 (80)
8 d2fi2a1 a.28.3.2 (A:37-128) Zi 12.6 55 0.004 29.1 2.9 81 163-256 5-86 (92)
9 d1d1da1 a.28.3.1 (A:151-230) R 8.0 79 0.0058 27.5 2.1 23 105-127 5-27 (80)
10 d1y7qa1 a.28.3.2 (A:37-132) Zi 6.3 1.4E+02 0.01 26.8 2.9 79 162-258 6-90 (96)
No 1
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=48.57 E-value=10 Score=33.52 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=45.3
Q ss_pred cccccccCCCCHHHHHHHHHHhhhcCCCch-hhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCHH
Q psy10146 169 FFTRDQQEGESVENYVAVLNKMSYDCEFEK-LREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESVE 247 (1902)
Q Consensus 169 FySRkQEpGESIDQFVAELRQLAESCEFGD-LEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTLE 247 (1902)
|.+.+|.+.|++.+||.+|..-++...-.. ...-| .+.+..--.+...|+=|..-.. .+-||+
T Consensus 3 ~~~IkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~l---------------~~~L~~qNANpdCk~~lr~l~~-~~~tle 66 (84)
T d1qrjb1 3 WASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPI---------------LRSLAYSNANKECQKLLQARGH-TNSPLG 66 (84)
T ss_dssp GGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHH---------------HHHHHTTTBCHHHHHHHHHTTC-SSSCHH
T ss_pred cccCccCCCCcHHHHHHHHHHHHHhhcCCHHHHHHH---------------HHHHHHHcccHHHHHHHHhcCC-CCCCHH
Confidence 567899999999999999999887754322 33332 2333344455666655532221 136788
Q ss_pred HHHHHHH
Q psy10146 248 NYVAVLN 254 (1902)
Q Consensus 248 KAVDIAr 254 (1902)
+-+..|+
T Consensus 67 e~~~aC~ 73 (84)
T d1qrjb1 67 DMLRACQ 73 (84)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8888776
No 2
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=34.99 E-value=13 Score=32.96 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.8
Q ss_pred eecccCCCCCCHHHHHHHHHhhhcC
Q psy10146 103 FFTRDQQEGESVENYVAVLNKMSYD 127 (1902)
Q Consensus 103 FnSRKQQPGESIDQFVTRLRKLAK~ 127 (1902)
|.+.+|++.|++.+||.+|...+..
T Consensus 3 ~~~IkQGpkEpf~dfVdRl~~a~~~ 27 (84)
T d1qrjb1 3 WASILQGLEEPYHAFVERLNIALDN 27 (84)
T ss_dssp GGGCCBCTTSCHHHHHHHHHHHHHT
T ss_pred cccCccCCCCcHHHHHHHHHHHHHh
Confidence 5677899999999999999877764
No 3
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=29.85 E-value=28 Score=29.46 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=40.5
Q ss_pred ccccCCCCHHHHHHHHHHhhhcCCCch-hhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCHHHHH
Q psy10146 172 RDQQEGESVENYVAVLNKMSYDCEFEK-LREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESVENYV 250 (1902)
Q Consensus 172 RkQEpGESIDQFVAELRQLAESCEFGD-LEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTLEKAV 250 (1902)
.+|.|.|++.+||.+|...++.+.-.. ...-|+ +.|.++ ..+...|.=|-.-. .+-||++-+
T Consensus 3 IkQgpkEpf~dfV~Rl~~~~~~~~~~~~~k~~~~--~~l~~~-------------nANpdCk~ilr~l~--~~~tLeemm 65 (70)
T d1a8oa_ 3 IRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMT--ETLLVQ-------------NANPDCKTILKALG--PGATLEEMM 65 (70)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHTTTCCHHHHHHHH--HTHHHH-------------TSCHHHHHHHHTTC--TTCCHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHh-------------hCCHHHHHHHHccC--CCCCHHHHH
Confidence 579999999999999999988876643 333331 123332 33444444333332 136787777
Q ss_pred HHHH
Q psy10146 251 AVLN 254 (1902)
Q Consensus 251 DIAr 254 (1902)
..|+
T Consensus 66 ~aCq 69 (70)
T d1a8oa_ 66 TACQ 69 (70)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 6653
No 4
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=28.89 E-value=17 Score=31.32 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=42.8
Q ss_pred cccccccCCCCHHHHHHHHHHhhhcCCC-chhhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCHH
Q psy10146 169 FFTRDQQEGESVENYVAVLNKMSYDCEF-EKLREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESVE 247 (1902)
Q Consensus 169 FySRkQEpGESIDQFVAELRQLAESCEF-GDLEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTLE 247 (1902)
+...+|.+.|++.+||.+|..-++.+.- .....-|+ ..|.++-+...++.-| -+ |.. +-||+
T Consensus 3 ~~dIkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~~~--~~L~~qNANpdCk~iL-r~----------l~~----~~tLe 65 (75)
T d2eiaa1 3 AQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLT--DTLTIQNANEECRNAM-RH----------LRP----EDTLE 65 (75)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHHHTSCTTTTTTT-TT----------CCT----TSCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhhcCcHhHHHHHH--HHHhHhcCCHHHHHHH-Hh----------cCC----CCCHH
Confidence 4456899999999999999888877744 34444442 2355555544433222 11 111 37788
Q ss_pred HHHHHHH
Q psy10146 248 NYVAVLN 254 (1902)
Q Consensus 248 KAVDIAr 254 (1902)
+.+..|+
T Consensus 66 emm~aCq 72 (75)
T d2eiaa1 66 EKMYACR 72 (75)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 8887764
No 5
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=15.49 E-value=39 Score=28.94 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=21.5
Q ss_pred eecccCCCCCCHHHHHHHHHhhhcCC
Q psy10146 103 FFTRDQQEGESVENYVAVLNKMSYDC 128 (1902)
Q Consensus 103 FnSRKQQPGESIDQFVTRLRKLAK~C 128 (1902)
+...+|++.|++.+||.+|...+..+
T Consensus 3 ~~dIkQGpkEpf~dfVdRl~~a~~~~ 28 (75)
T d2eiaa1 3 AQNIRQGAKEPYPEFVDRLLSQIKSE 28 (75)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhh
Confidence 34568999999999999998777654
No 6
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=13.50 E-value=64 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.8
Q ss_pred ccCCCCCCHHHHHHHHHhhhcCCCCC
Q psy10146 106 RDQQEGESVENYVAVLNKMSYDCEFE 131 (1902)
Q Consensus 106 RKQQPGESIDQFVTRLRKLAK~CEFG 131 (1902)
.+|+|.|++.+||.+|...+..+.-.
T Consensus 3 IkQgpkEpf~dfV~Rl~~~~~~~~~~ 28 (70)
T d1a8oa_ 3 IRQGPKEPFRDYVDRFYKTLRAEQAS 28 (70)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CccCCCCCHHHHHHHHHHHHHhhcCC
Confidence 47999999999999999888765543
No 7
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=13.00 E-value=1.2e+02 Score=26.25 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=42.9
Q ss_pred ccccccCCCCHHHHHHHHHHhhhcCCC-chhhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhhcCccCCCCCCH-H
Q psy10146 170 FTRDQQEGESVENYVAVLNKMSYDCEF-EKLREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKFFTRDQQEGESV-E 247 (1902)
Q Consensus 170 ySRkQEpGESIDQFVAELRQLAESCEF-GDLEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRLLeEDd~e~LTL-E 247 (1902)
...+|.+.|++.+||.+|..-++.-.- ...+.-| .+.+..--.+...|.=|..-+ .+.|+ .
T Consensus 4 t~IkQGpkEpf~dfVdRl~~al~~~~~~~~~k~~~---------------~~~L~~qNANpdCk~iLral~--~~~tl~~ 66 (80)
T d1d1da1 4 ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPV---------------IIDCFRQKSQPDIQQLIRAAP--STLTTPG 66 (80)
T ss_dssp TSCCCCSSSCHHHHHHHHHHHHHTSSCCTTTTTHH---------------HHHHHTTSSCHHHHHHHHTSC--TTCCSTT
T ss_pred cccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH---------------HHHHHHHhcCHHHHHHHHhCC--CCCCcHH
Confidence 456899999999999999988876322 2233332 233334456666666665554 23555 4
Q ss_pred HHHHHHHHh
Q psy10146 248 NYVAVLNKM 256 (1902)
Q Consensus 248 KAVDIArAm 256 (1902)
+.|+.+.--
T Consensus 67 emi~~~~~~ 75 (80)
T d1d1da1 67 EIIKYVLDR 75 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566655443
No 8
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.61 E-value=55 Score=29.13 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=54.2
Q ss_pred eeeccccccccccCCCCHHHHHHHHHHhhhcCCCchhhhhhhhccchhHHHHHhh-hhceeccCCCchHHHHhhcCccCC
Q psy10146 163 TYVRHKFFTRDQQEGESVENYVAVLNKMSYDCEFEKLREDLLDNKSLQLEEVISK-LTDHFVPKKNLTYVRHKFFTRDQQ 241 (1902)
Q Consensus 163 IyERYKFySRkQEpGESIDQFVAELRQLAESCEFGDLEDELIrDksLTIEea~EK-LRDRIVcGIrSkaIQRRLLeEDd~ 241 (1902)
-..|.+|++-.=+++++.-+++.+||.+....=-.+ --|.+++.+. +.+||.. +-...+|.++-+...
T Consensus 5 E~~rq~FR~f~y~e~~~p~e~l~rL~eLc~~WL~pe---------~~tkeqilelLVLEQFl~-~lP~e~~~~V~e~~p- 73 (92)
T d2fi2a1 5 EAARLRFRCFHYEEATGPQEALAQLRELCRQWLRPE---------VRSKEQMLELLVLEQFLG-ALPPEIQARVQGQRP- 73 (92)
T ss_dssp HHHHHHHHSCCCCTTTCHHHHHHHHHHHHHHHHCTT---------TCCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHCC-
T ss_pred HHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHcCCc---------ccCHHHHHHHHHHHHHHH-HCCHHHHHHHHHhCC-
Confidence 346778888877899999999999999985441111 0112222222 4577774 666779998877653
Q ss_pred CCCCHHHHHHHHHHh
Q psy10146 242 EGESVENYVAVLNKM 256 (1902)
Q Consensus 242 e~LTLEKAVDIArAm 256 (1902)
-|.++|+.+|-.+
T Consensus 74 --~s~~eav~L~Edl 86 (92)
T d2fi2a1 74 --GSPEEAAALVDGL 86 (92)
T ss_dssp --CSHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 6788888887644
No 9
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=8.03 E-value=79 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=19.8
Q ss_pred cccCCCCCCHHHHHHHHHhhhcC
Q psy10146 105 TRDQQEGESVENYVAVLNKMSYD 127 (1902)
Q Consensus 105 SRKQQPGESIDQFVTRLRKLAK~ 127 (1902)
..+|++.|++.+||.+|...+..
T Consensus 5 ~IkQGpkEpf~dfVdRl~~al~~ 27 (80)
T d1d1da1 5 DITQGPSESFVDFANRLIKAVEG 27 (80)
T ss_dssp SCCCCSSSCHHHHHHHHHHHHHT
T ss_pred ccccCCCccHHHHHHHHHHHHHH
Confidence 56799999999999999876664
No 10
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=1.4e+02 Score=26.76 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred ceeeccccccccccCCCCHHHHHHHHHHhhh------cCCCchhhhhhhhccchhHHHHHhhhhceeccCCCchHHHHhh
Q psy10146 162 LTYVRHKFFTRDQQEGESVENYVAVLNKMSY------DCEFEKLREDLLDNKSLQLEEVISKLTDHFVPKKNLTYVRHKF 235 (1902)
Q Consensus 162 LIyERYKFySRkQEpGESIDQFVAELRQLAE------SCEFGDLEDELIrDksLTIEea~EKLRDRIVcGIrSkaIQRRL 235 (1902)
.-..|.+|+.-.=.++++--+++.+||.+.. .|.-..+.+-| +..||.. +-...+|..+
T Consensus 6 pE~~rqrFR~f~~~e~~~P~eal~rL~eLc~~WLrPe~~tKEqilelL--------------VLEQFl~-~lP~e~q~wV 70 (96)
T d1y7qa1 6 PELCRQSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELL--------------VMEQFLT-ILPEEIQARV 70 (96)
T ss_dssp TTHHHHHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHH--------------HHHHHHH-HSCTHHHHHH
T ss_pred hhHHHHHhcCCCcccCCCHHHHHHHHHHHHHHHcCccccCHHHHHHHH--------------HHHHHHH-HCCHHHHHHH
Confidence 3455777877777788888899999999873 22212233332 5578875 5666799999
Q ss_pred cCccCCCCCCHHHHHHHHHHhcc
Q psy10146 236 FTRDQQEGESVENYVAVLNKMSY 258 (1902)
Q Consensus 236 LeEDd~e~LTLEKAVDIArAmEl 258 (1902)
-+... -|.++|+.+|-.+..
T Consensus 71 ~e~~p---~s~eeav~L~Edl~~ 90 (96)
T d1y7qa1 71 RHRCL---MSSKEIVTLVEDFHR 90 (96)
T ss_dssp HTSCC---CCHHHHHHHHHHHHT
T ss_pred HHhCC---CCHHHHHHHHHHHHH
Confidence 88863 678999988876653
Done!