RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10146
         (1902 letters)



>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
           RocB.  Peptidase M20 family, ArgE RocB (Arginine
           utilization protein, RocB; arginine degradation protein,
           RocB) subfamily. This group of proteins is possibly
           related to acetylornithine deacetylase (ArgE) and may be
           involved in the arginine and/or ornithine degradation
           pathway. In Bacillus subtilis, RocB is one of the three
           genes found in the rocABC operon, which is sigma L
           dependent and induced by arginine. The function of
           members of this family is as yet unknown, although they
           are predicted as deacetylases.
          Length = 535

 Score = 30.6 bits (70), Expect = 8.9
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 59  CLHIFNSFGLNDKLDNKSLQLEEVISKFTDHFVPKKNLTYVRHKFF-----------TRD 107
             H+  S   +D+       L EV+ +       K   T     +F             D
Sbjct: 412 YPHVNLSGEEDDQK------LLEVLEELKKEAKEKFGETLKVKHYFPGISDLSYLGLDDD 465

Query: 108 QQEGESVENYVAVLNKMSYDCEFEKLRE 135
            +  ES+++ +    K+ Y    E++++
Sbjct: 466 LEGIESLKDNMPGWGKL-YHLPLEEIKK 492


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 95,657,019
Number of extensions: 9766549
Number of successful extensions: 10374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10258
Number of HSP's successfully gapped: 154
Length of query: 1902
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1791
Effective length of database: 6,014,308
Effective search space: 10771625628
Effective search space used: 10771625628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (29.2 bits)