BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10147
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LW5|B Chain B, Improved Model Of Plant Photosystem I
          Length = 733

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 35  WISFISHW---SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNS 91
           W++F  HW   +LW   ++ F  N S+  +M WL      YL  NS  L     P V NS
Sbjct: 588 WVTFYWHWKHITLWRGNVSQF--NESSTYLMGWL----RDYLWLNSSQLINGITPLVCNS 641

Query: 92  L 92
           L
Sbjct: 642 L 642


>pdb|2WSC|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSE|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSF|B Chain B, Improved Model Of Plant Photosystem I
          Length = 734

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 35  WISFISHW---SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNS 91
           W++F  HW   +LW   ++ F  N S+  +M WL      YL  NS  L     P V NS
Sbjct: 589 WVTFYWHWKHITLWRGNVSQF--NESSTYLMGWL----RDYLWLNSSQLINGITPLVCNS 642

Query: 92  L 92
           L
Sbjct: 643 L 643


>pdb|2O01|B Chain B, The Structure Of A Plant Photosystem I Supercomplex At 3.4
           Angstrom Resolution
          Length = 732

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 35  WISFISHW---SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNS 91
           W++F  HW   +LW   ++ F  N S+  +M WL      YL  NS  L     P V NS
Sbjct: 588 WVTFYWHWKHITLWRGNVSQF--NESSTYLMGWL----RDYLWLNSSQLINGITPLVCNS 641

Query: 92  L 92
           L
Sbjct: 642 L 642


>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
           Mycobacterium Tuberculosis H37rv
          Length = 549

 Score = 26.6 bits (57), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 98  GHFADNLVSHSWTVLTVRRLMTSIGL------IGPAVFLIFFCAVDNLLFAVIISMGLSA 151
           G F D L S  WT  T +R+ T + +      +GP   ++ + A+ +   A I +  +S 
Sbjct: 124 GAFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGP---VMVYQALRHYADAGISARFVSN 180

Query: 152 FNSAGFLASHADIAP 166
            + A  +A+ AD+ P
Sbjct: 181 VDPADLIATLADLDP 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.134    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,734,587
Number of Sequences: 62578
Number of extensions: 162604
Number of successful extensions: 274
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)