Query psy10147
Match_columns 179
No_of_seqs 181 out of 1200
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 19:03:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.5 5.8E-13 2E-17 100.5 15.1 136 33-177 249-388 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.5 1.2E-12 4.3E-17 99.0 14.9 136 35-178 245-389 (451)
3 2cfq_A Lactose permease; trans 99.3 2E-10 6.9E-15 86.6 16.6 134 34-176 212-353 (417)
4 2gfp_A EMRD, multidrug resista 99.3 5.7E-12 2E-16 93.4 7.3 137 33-178 190-333 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.2 6.5E-10 2.2E-14 85.1 13.1 127 42-177 13-152 (491)
6 1pw4_A Glycerol-3-phosphate tr 99.1 1.4E-09 4.7E-14 82.2 12.6 126 41-177 27-161 (451)
7 2xut_A Proton/peptide symporte 99.1 5.9E-10 2E-14 86.1 10.6 125 42-175 12-149 (524)
8 3o7q_A L-fucose-proton symport 99.1 2.8E-09 9.5E-14 80.3 13.8 125 44-178 28-160 (438)
9 2cfq_A Lactose permease; trans 98.8 1.1E-08 3.6E-13 77.2 6.4 70 38-107 3-73 (417)
10 2gfp_A EMRD, multidrug resista 98.8 1.2E-08 4E-13 75.5 6.2 122 46-177 4-130 (375)
11 4aps_A DI-OR tripeptide H+ sym 98.7 2.7E-08 9.3E-13 76.1 7.6 131 44-178 285-429 (491)
12 4gc0_A D-xylose-proton symport 98.6 1.9E-06 6.6E-11 65.8 13.6 122 47-178 282-413 (491)
13 4gc0_A D-xylose-proton symport 98.5 2.6E-06 8.7E-11 65.1 12.6 86 83-177 61-168 (491)
14 2xut_A Proton/peptide symporte 95.9 0.0017 5.9E-08 49.9 0.8 27 152-178 421-448 (524)
15 1cqt_I POU domain, class 2, as 23.9 54 0.0019 15.5 1.8 14 30-43 23-36 (44)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=5.8e-13 Score=100.52 Aligned_cols=136 Identities=5% Similarity=-0.027 Sum_probs=98.6
Q ss_pred CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147 33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTY-MSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT 110 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~ 110 (179)
.++++++++|.++...+..++.....+.+..|+|.| +++.+|+++.+++ +.....++..++.+++|+++||+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--- 325 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--- 325 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---
Confidence 467789999999999999999888899999999999 8888899999999 57777888999999999999998653
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147 111 VLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNHAGVTFAISN 177 (179)
Q Consensus 111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~ 177 (179)
.....+.+...+..+.....++.+..+. +.....+...+..++...|..|++++.+.++.+
T Consensus 326 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
T 3o7q_A 326 ------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV 388 (438)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Confidence 2333444444444444444544433323 222233344566778878888877777666543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=1.2e-12 Score=99.00 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=96.4
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHH--HhcCCch
Q psy10147 35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNL--VSHSWTV 111 (179)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~--~~r~~~~ 111 (179)
++++++++.++...+..++.....+.+..++|.|+++.+|+++.+++ +.....++..++.+++|+++||+ ++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~---- 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---- 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----
Confidence 46788899999999999999999999999999999998999999988 57777888999999999999998 543
Q ss_pred hhhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147 112 LTVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT 178 (179)
Q Consensus 112 ~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~ 178 (179)
+.......+...+.+..+...+ +.+.... +..++ .+...+..+....|..|++ +|++.|+.++
T Consensus 321 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 321 ----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 3333323332323333333332 3333322 22222 2233445678888988865 9999998764
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=2e-10 Score=86.59 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=85.7
Q ss_pred cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147 34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA---NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW 109 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~ 109 (179)
+++++++++.++...+..++....++.+..++|.|+++.++. +....+ +..+..+...++.+++|+++||+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-- 289 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-- 289 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--
Confidence 456788999998877776666666667778899999876553 233345 35566677788899999999999754
Q ss_pred chhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147 110 TVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS 176 (179)
Q Consensus 110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~ 176 (179)
+. ...+.+..++....+...++.+..++ +.....+......+.+..|..|++ +|++.++.
T Consensus 290 ------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 290 ------NA-LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp ------HH-HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ------HH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 22 33344444444444444444443333 222222333444678889998876 99988873
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=5.7e-12 Score=93.43 Aligned_cols=137 Identities=11% Similarity=0.012 Sum_probs=93.8
Q ss_pred CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147 33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV 111 (179)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~ 111 (179)
.++++++++|.++...+..++.....+.+..+.|.|+++.+|+++.+++ +.....++..++.++.+++.||.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---- 265 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---- 265 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH----
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4567889999999999999999999999999999999998999999888 47777788888999999999987531
Q ss_pred hhhHHHHHHHHh-HHhHHHHHHHhh--cchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147 112 LTVRRLMTSIGL-IGPAVFLIFFCA--VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT 178 (179)
Q Consensus 112 ~~~r~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~ 178 (179)
....... ............ .++.+.... +.....+...+...+...|..|+++|++.|+.+.
T Consensus 266 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~ 333 (375)
T 2gfp_A 266 -----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGG 333 (375)
T ss_dssp -----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHH
Confidence 1111111 111111111111 113332222 2222334446677888889889779999998764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=6.5e-10 Score=85.14 Aligned_cols=127 Identities=14% Similarity=0.042 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCcccch-hhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhh
Q psy10147 42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSY-----LGANSHSLS-FTAMPYVLNSLFCIVAGHFADN-LVSHSWTVLTV 114 (179)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~~~~ 114 (179)
+.++...+..++....+|++..++|.|+++. +|++..+.+ +.....++..++.+++|+++|| ++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------- 85 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------- 85 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence 3467777888888899999999999999998 999999999 5788889999999999999999 7753
Q ss_pred HHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-h--HHHHHHHhh
Q psy10147 115 RRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-H--AGVTFAISN 177 (179)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~--~g~~~gi~~ 177 (179)
..+..+.+...+..+.....++.+..++ +..+ ..+...+...+.+.|.+|+ + |+.+.++.+
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 3444555555555555555555554444 2222 3344466778889998863 4 666766543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.11 E-value=1.4e-09 Score=82.23 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q psy10147 41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMT 119 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~ 119 (179)
.+.++...+..+......+.+...+|.+.++ + .+..+.+ +.....++..++.+++|+++||+++| ..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch---------HHH
Confidence 3455666666677666667777888886655 5 8999999 47888899999999999999999754 344
Q ss_pred HHHhHHhHHHHHHHhh----cchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147 120 SIGLIGPAVFLIFFCA----VDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN 177 (179)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~ 177 (179)
..+.+...+..+.... .++.+..++ +..+ ..+...+...+++.|..|+ +|+.+.|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 4555555555555544 444444433 3333 3344566778899999875 5999988765
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.10 E-value=5.9e-10 Score=86.10 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccch-hhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhh
Q psy10147 42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLG------ANSHSLS-FTAMPYVLNSLFCIVAGHFADNL-VSHSWTVLT 113 (179)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g------~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~-~~r~~~~~~ 113 (179)
+.+|...+..++....+|++..++|.|+++++| +++.+.+ +.....++..++.+++|+++||+ ++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 446677788888888999999999999999999 9999999 47778888999999999999998 754
Q ss_pred hHHHHHHHHhHHhHHHHHHHhhcc-hHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHH
Q psy10147 114 VRRLMTSIGLIGPAVFLIFFCAVD-NLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAI 175 (179)
Q Consensus 114 ~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi 175 (179)
+ .+..+.+...+..+.....+ +.+..++ +..+ ..+...+...+.+.|..|++ |+.+.++
T Consensus 86 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 86 --N-TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp --H-HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred --H-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 2 33345555544555455555 5554444 2222 33444667788899988754 7654443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.10 E-value=2.8e-09 Score=80.33 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147 44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG 122 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~ 122 (179)
++...+..+......+.....+|. +++++|++..+.+ +.....++..++.+++|+++||+++| ..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~l~~~ 97 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch---------HHHHHH
Confidence 344455555555555666667777 5667899999999 47788889999999999999999864 334445
Q ss_pred hHHhHHHHHHH---hhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147 123 LIGPAVFLIFF---CAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT 178 (179)
Q Consensus 123 ~~~~~~~~~~~---~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~ 178 (179)
.+...+..+.. ...++.+..++ +..+ ..+...+...+++.|..|++ |+.+.++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 160 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT 160 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHH
Confidence 55555555444 44556555544 3332 33444666788999998754 8888877653
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.77 E-value=1.1e-08 Score=77.16 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=62.3
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147 38 FISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH 107 (179)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r 107 (179)
++++|++|......++....+.....++|.|+++++|+|+.+.| +.....++..++.+++|+++||++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr 73 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 57889999888888888778888889999999998999999999 47777889999999999999999876
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.76 E-value=1.2e-08 Score=75.52 Aligned_cols=122 Identities=7% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147 46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI 124 (179)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~ 124 (179)
...+..++.......+...+|.+ .+++|.|+.+.+ +.....++..++.++.|+++||++||.. +..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~---------~~~~~~ 73 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV---------ILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC---------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---------HHHHHH
Confidence 44555556666666677777875 456899999999 4788888999999999999999987632 122333
Q ss_pred HhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147 125 GPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN 177 (179)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~ 177 (179)
...+........++.+..+. +..+ ..+...+...+.+.|..|+ +|+.+.++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLN 130 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence 33333333333444444333 2222 2333456677888888864 4777776654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.73 E-value=2.7e-08 Score=76.12 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147 44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG 122 (179)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~ 122 (179)
.+...+..++....+.....++|.|+++.++.+..+.+ +.....+...++.++.|+++||++||... +...+..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~----~~~~~~~~ 360 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS----SPTKFAVG 360 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC----chHHHHHH
Confidence 44455555555566666778899999998898877777 47777788889999999999999876322 11112233
Q ss_pred hHHhHHHHHHHhhc---------chHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147 123 LIGPAVFLIFFCAV---------DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT 178 (179)
Q Consensus 123 ~~~~~~~~~~~~~~---------~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~ 178 (179)
.+...+.+..+... .+.+.... +..+ ..+...+..++.+.|..|++ +|++.|+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 429 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFL 429 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333332222211 12232222 2222 22333556788899999876 8888877653
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.57 E-value=1.9e-06 Score=65.79 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147 47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG 125 (179)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~ 125 (179)
.....+....+.+.+..|.|.+.++ .+.+..... ...+..+...++.++++++.||++|| + ....+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-------~--~~~~~~~~ 351 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-------P--LQIIGALG 351 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-------H--HHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-------c--hhccchHH
Confidence 3334444455566667777776554 577666655 46667788889999999999999865 2 22223323
Q ss_pred hHHHHHHHh----hcchHHHHHH---HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhhc
Q psy10147 126 PAVFLIFFC----AVDNLLFAVI---ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISNT 178 (179)
Q Consensus 126 ~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~~ 178 (179)
..+.++.+. .....+..+. +....++.. .+..+.+..|++|.+ |+++.|+.++
T Consensus 352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 352 MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 222222221 1122222222 222222222 345688999999977 9999887653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.50 E-value=2.6e-06 Score=65.12 Aligned_cols=86 Identities=15% Similarity=-0.003 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh------------------hcchHHHHHH
Q psy10147 83 TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC------------------AVDNLLFAVI 144 (179)
Q Consensus 83 ~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 144 (179)
.....++..+|++++|+++||+||| ..+..+.+...+..+... ..++.+..++
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk---------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRR---------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHH---------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 5567788999999999999999864 333344444433333322 1334444444
Q ss_pred --HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147 145 --ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN 177 (179)
Q Consensus 145 --~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~ 177 (179)
+..| ..+...+...+++.|..|++ ||...++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence 3333 34445677889999999865 888777654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.92 E-value=0.0017 Score=49.88 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=20.9
Q ss_pred hhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147 152 FNSAGFLASHADIAPNH-AGVTFAISNT 178 (179)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~g~~~gi~~~ 178 (179)
...+..++...|..|++ +|++.|+.++
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 448 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTL 448 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGG
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHH
Confidence 34566788888988865 9999988875
No 15
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=23.89 E-value=54 Score=15.54 Aligned_cols=14 Identities=0% Similarity=-0.185 Sum_probs=10.1
Q ss_pred CCCCcHHHHhhcHH
Q psy10147 30 TNGPRWISFISHWS 43 (179)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (179)
..+.|.+++++.++
T Consensus 23 RVkePVKELLrRKR 36 (44)
T 1cqt_I 23 RVKEPVKELLRRKR 36 (44)
T ss_dssp CCSSCHHHHHHHTT
T ss_pred ecccHHHHHHHHhh
Confidence 45678999987654
Done!