RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10147
         (179 letters)



>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 9/181 (4%)

Query: 3   SPDVEPVSRRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIM 62
           S  + P+       P      A+             + +  LW + IA+  +    Y I+
Sbjct: 213 SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL 272

Query: 63  QWLPTYMSSYLGANSHSLSFTAM-PYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI 121
            W PTY+           S+             ++ G  +D +   +     V      +
Sbjct: 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF----FM 328

Query: 122 GLIGPAVFLIFFCAVDNLLFAVIISMGLSAFN---SAGFLASHADIAPNHA-GVTFAISN 177
            L+  A  + +     N    +I  + +                ++AP  A G     + 
Sbjct: 329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388

Query: 178 T 178
            
Sbjct: 389 L 389


>3pqu_A Transferrin binding protein B; lipoprotein, transferrin receptor,
          iron acquisition, vaccine candidate, beta-barrel,
          outermembrane; 2.10A {Actinobacillus suis}
          Length = 570

 Score = 27.6 bits (60), Expect = 2.7
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 5  DVEPVSRRPTVPPPQPPPSAKMVT 28
          D+E V    T    +   S +   
Sbjct: 2  DLEDVRPNQTAKAEKATTSYQDEE 25


>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase,
          CYP170A1, molecular mechanism, heme, iron,
          metal-binding, monooxygenase; HET: HEM; 2.60A
          {Streptomyces coelicolor A3} PDB: 3el3_A*
          Length = 467

 Score = 26.1 bits (58), Expect = 8.7
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 10 SRRPTVPPPQPPPSAKMVTITNGPRWISFISH 41
          S  P    P  P + ++         +  + H
Sbjct: 5  SVNPETRAPAAPGAPELREPPVAGGGVPLLGH 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,812,260
Number of extensions: 155205
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 20
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)