RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10147
         (179 letters)



>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 26.8 bits (58), Expect = 1.8
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 36  ISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCI 95
                H SLW               +      Y+   L      L+FT     +NS   +
Sbjct: 169 SGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNP--TVNSYKRL 226

Query: 96  VAGHFADNLVSHSWT 110
           V G+ A   + +S  
Sbjct: 227 VPGYEAPINLVYSQR 241


>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 192

 Score = 25.0 bits (54), Expect = 4.9
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 47  VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAM---PYVLNSLFCIVAGHFADN 103
           V    F  + S  ++ +     + SYLG    +    A     Y+ N +  I    +   
Sbjct: 43  VMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPM 102

Query: 104 LVSH 107
            V  
Sbjct: 103 RVFP 106


>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 4   PDVEPVSRRPTVPPPQPPPSA 24
           P   P S    VPPP   P+ 
Sbjct: 113 PPPPPPSPEAHVPPPYVEPTT 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 681,645
Number of extensions: 29295
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 13
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)