Query psy10148
Match_columns 108
No_of_seqs 124 out of 887
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:04:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748|consensus 100.0 4.5E-31 9.7E-36 200.1 8.8 103 3-106 164-268 (286)
2 PF03006 HlyIII: Haemolysin-II 100.0 1.9E-28 4.2E-33 176.9 8.6 93 6-101 128-222 (222)
3 TIGR01065 hlyIII channel prote 99.8 9.9E-19 2.1E-23 126.8 9.3 82 11-108 123-204 (204)
4 PRK15087 hemolysin; Provisiona 99.7 7.8E-17 1.7E-21 118.2 10.1 80 10-108 136-216 (219)
5 COG1272 Predicted membrane pro 99.7 7.3E-17 1.6E-21 119.0 5.7 84 9-108 140-223 (226)
6 KOG4243|consensus 97.8 5.4E-07 1.2E-11 67.1 -5.1 77 12-108 212-288 (298)
7 PF05875 Ceramidase: Ceramidas 88.7 8.1 0.00018 28.7 9.7 51 53-103 175-233 (262)
8 PF13965 SID-1_RNA_chan: dsRNA 77.6 3.3 7.2E-05 34.7 3.8 26 75-104 527-552 (570)
9 PF04080 Per1: Per1-like ; In 64.7 23 0.00051 27.0 5.6 39 61-105 225-263 (267)
10 PF02694 UPF0060: Uncharacteri 53.4 30 0.00065 22.9 3.9 62 10-84 30-91 (107)
11 KOG3059|consensus 46.6 1.4E+02 0.003 23.3 10.0 60 12-73 116-194 (292)
12 PRK02237 hypothetical protein; 46.6 60 0.0013 21.6 4.5 32 52-84 62-93 (109)
13 KOG2970|consensus 44.0 1E+02 0.0022 24.2 6.1 24 77-104 283-306 (319)
14 PF09604 Potass_KdpF: F subuni 42.9 43 0.00093 16.4 2.9 14 61-74 12-25 (25)
15 PF02076 STE3: Pheromone A rec 41.5 81 0.0018 24.0 5.3 35 47-82 28-62 (283)
16 PF13210 DUF4018: Domain of un 35.8 39 0.00084 24.3 2.5 44 26-75 31-74 (192)
17 PF08492 SRP72: SRP72 RNA-bind 35.5 15 0.00033 21.7 0.4 9 70-78 44-52 (59)
18 cd04907 ACT_ThrD-I_2 Second of 35.5 8.8 0.00019 23.7 -0.7 13 65-79 3-15 (81)
19 COG3730 SrlA Phosphotransferas 33.7 44 0.00095 23.8 2.5 20 65-84 86-105 (176)
20 PF07226 DUF1422: Protein of u 31.1 1.7E+02 0.0036 19.7 8.4 31 60-101 73-107 (117)
21 PF07853 DUF1648: Protein of u 28.2 61 0.0013 17.9 2.1 18 65-83 13-30 (51)
22 PF11998 DUF3493: Protein of u 27.5 81 0.0017 19.5 2.7 25 10-34 15-40 (75)
23 TIGR02741 TraQ type-F conjugat 27.1 90 0.002 19.4 2.8 16 92-107 18-33 (80)
24 TIGR02115 potass_kdpF K+-trans 27.0 74 0.0016 15.7 2.0 15 61-75 11-25 (26)
25 COG5031 COQ4 Uncharacterized p 25.6 30 0.00065 25.9 0.6 12 82-93 131-142 (235)
26 PF10233 Cg6151-P: Uncharacter 24.0 2.3E+02 0.0049 18.9 6.2 15 11-25 65-79 (113)
27 PRK11056 hypothetical protein; 23.9 2.4E+02 0.0052 19.1 8.7 32 59-101 72-107 (120)
28 PRK14759 potassium-transportin 23.8 1.2E+02 0.0025 15.4 3.2 13 62-74 17-29 (29)
29 COG3476 Tryptophan-rich sensor 23.8 2.7E+02 0.0059 19.7 7.6 64 3-72 37-105 (161)
30 PF00585 Thr_dehydrat_C: C-ter 23.5 18 0.0004 22.7 -0.8 13 65-79 12-24 (91)
31 PRK13727 conjugal transfer pil 22.6 1E+02 0.0022 19.2 2.4 16 92-107 18-33 (80)
32 COG3090 DctM TRAP-type C4-dica 22.4 2.8E+02 0.0061 19.4 5.7 58 17-74 22-87 (177)
33 PF08060 NOSIC: NOSIC (NUC001) 22.4 40 0.00087 19.1 0.6 11 63-73 24-34 (53)
34 PF09980 DUF2214: Predicted me 22.3 1.1E+02 0.0024 21.4 2.9 22 13-34 80-101 (150)
35 KOG0661|consensus 21.7 70 0.0015 26.8 2.0 27 64-97 202-228 (538)
36 PF03608 EII-GUT: PTS system e 21.1 77 0.0017 22.6 1.9 16 67-82 85-100 (168)
37 PF14851 FAM176: FAM176 family 20.3 2.6E+02 0.0055 19.6 4.4 13 61-73 9-21 (153)
No 1
>KOG0748|consensus
Probab=99.97 E-value=4.5e-31 Score=200.09 Aligned_cols=103 Identities=31% Similarity=0.470 Sum_probs=93.0
Q ss_pred ccccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccc
Q psy10148 3 LQIPRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVD 80 (108)
Q Consensus 3 ~~~p~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD 80 (108)
.+.|||++| |..|+.+|+.+|.++++|++|++....|.+ +.++..+.+...++++|.+|+++|++|+||||+|||||
T Consensus 164 ~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~-~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD 242 (286)
T KOG0748|consen 164 SLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILFGGRG-PEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFD 242 (286)
T ss_pred echhhhCCccchhhHHHHHHHHHHhhccHhhhheeeecCCc-cceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccc
Confidence 457888776 799999999999999999999998765543 44567789999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHh
Q psy10148 81 YIGSSHQWWHFFVVLALYYWHNTGIK 106 (108)
Q Consensus 81 ~~g~SHqifHi~v~~g~~~h~~~~~~ 106 (108)
++||||||||++|++|++.|+.+++.
T Consensus 243 ~~G~SHQifHv~vv~~a~~~~~a~~~ 268 (286)
T KOG0748|consen 243 IWGHSHQIFHVLVVLAALFHLEAVLL 268 (286)
T ss_pred eeCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=99.95 E-value=1.9e-28 Score=176.90 Aligned_cols=93 Identities=33% Similarity=0.547 Sum_probs=82.0
Q ss_pred cccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCC
Q psy10148 6 PRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIG 83 (108)
Q Consensus 6 p~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g 83 (108)
++++++ |..|+..|+++|+++++|+.|+.....+.+++. . +...+.++++|++|+++|++|+||||.||+||++|
T Consensus 128 ~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g 204 (222)
T PF03006_consen 128 PCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPD--P-LWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWG 204 (222)
T ss_pred hhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchH--H-HHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCC
Confidence 344433 899999999999999999999876555555443 4 78899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHH
Q psy10148 84 SSHQWWHFFVVLALYYWH 101 (108)
Q Consensus 84 ~SHqifHi~v~~g~~~h~ 101 (108)
||||+||++|++|+.+||
T Consensus 205 ~sHqi~Hi~v~~~~~~h~ 222 (222)
T PF03006_consen 205 HSHQIWHIFVVLAALCHY 222 (222)
T ss_pred ccHHHHHHHHHHHHHHHC
Confidence 999999999999999996
No 3
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=99.78 E-value=9.9e-19 Score=126.81 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHHHH
Q psy10148 11 HPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWH 90 (108)
Q Consensus 11 ~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqifH 90 (108)
+|++|+.+|+++||+++.|+-+... . . +...+.+.+.+++.|++|+++|++|+|||+.| ||+||
T Consensus 123 ~r~~r~~~y~~~G~~~v~~~~~~~~-~--~----~~~~~~~l~~gg~~Y~~G~~fY~~~~p~~~~~---------H~iwH 186 (204)
T TIGR01065 123 PRWLSLFLYLIMGWLVVLVIKPLYH-N--L----PGAGFSLLAAGGLLYTVGAIFYALKWPIPFTY---------HAIWH 186 (204)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH-h--C----CHHHHHHHHHHhHHHHcchHheeecCCCCCCc---------ChHHH
Confidence 4899999999999998777654321 1 1 23457888999999999999999999999744 99999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy10148 91 FFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 91 i~v~~g~~~h~~~~~~~~ 108 (108)
++|++|+.+|+.+++.|+
T Consensus 187 ~fV~~g~~~h~~~i~~~~ 204 (204)
T TIGR01065 187 LFVLGASACHFVAILFYV 204 (204)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999999999999999875
No 4
>PRK15087 hemolysin; Provisional
Probab=99.71 E-value=7.8e-17 Score=118.24 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhc-CCccccCCccccCCCchHH
Q psy10148 10 IHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITR-FPECFFTGKVDYIGSSHQW 88 (108)
Q Consensus 10 ~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~-~PEr~~PG~FD~~g~SHqi 88 (108)
++|++|+..|++|||++++|+.+..... +...+.+++.+|++|++|++||+.| +|| |||+
T Consensus 136 ~~r~l~~~~Yl~mGw~~v~~~~~l~~~~-------~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~------------~H~I 196 (219)
T PRK15087 136 RFKVLSLVTYLAMGWLSLIVIYQLAIKL-------AIGGVTLLAVGGVVYSLGVIFYVCKRIPY------------NHAI 196 (219)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHhHHHHhhHHHHccCCCCC------------chhH
Confidence 3589999999999999999998876421 2345788899999999999999995 676 7999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy10148 89 WHFFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 89 fHi~v~~g~~~h~~~~~~~~ 108 (108)
||+||++|+.+|+.+++.|+
T Consensus 197 wH~fVl~ga~~H~~ai~~~~ 216 (219)
T PRK15087 197 WHGFVLGGSVCHFLAIYLYV 216 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998774
No 5
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=99.67 E-value=7.3e-17 Score=118.96 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHH
Q psy10148 9 NIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW 88 (108)
Q Consensus 9 ~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqi 88 (108)
+++|++|+.+|++|||+++.|+-+... .. +...+.++..+|++|++|++||+.|+ |.+++|||+
T Consensus 140 ~~~r~ls~~~yl~mGw~~v~~~~~l~~-~l------~~~~~~~l~~GGv~YsvG~ifY~~~~---------~~~~~~H~i 203 (226)
T COG1272 140 KRFRKLSLVLYLAMGWLGLIVIKPLIA-KL------GLIGLVLLALGGVLYSVGAIFYVLRI---------DRIPYSHAI 203 (226)
T ss_pred CcCceeeehhhHHHHHHHHHHHHHHHH-hC------chHHHHHHHHHhHHheeeeEEEEEee---------ccCCchHHH
Confidence 456999999999999998888766654 22 23568889999999999999999998 567899999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy10148 89 WHFFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 89 fHi~v~~g~~~h~~~~~~~~ 108 (108)
||+||+.|+.+||.+++.|+
T Consensus 204 wH~fVv~ga~~Hf~ai~~~~ 223 (226)
T COG1272 204 WHLFVVGGAACHFIAILFYV 223 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998763
No 6
>KOG4243|consensus
Probab=97.78 E-value=5.4e-07 Score=67.12 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHHHHH
Q psy10148 12 PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHF 91 (108)
Q Consensus 12 r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqifHi 91 (108)
+.+.+.+|+.||.. |-+-.. ......++.++..+|.+|.+|.+|+.+.=- +--.|.|||+
T Consensus 212 K~lEt~~Ylvmg~g---Palvv~-------sm~~~~Gl~~l~~GG~~Y~lGvvFFK~DG~----------ipfAHAIWHL 271 (298)
T KOG4243|consen 212 KVLETFFYLVMGFG---PALVVT-------SMNNTDGLQELATGGLFYCLGVVFFKSDGI----------IPFAHAIWHL 271 (298)
T ss_pred HHHHHHHHHHHhcC---ceEEEE-------EeCCchhHHHHHhCCEEEEEEEEEEecCCc----------eehHHHHHHH
Confidence 56777777777764 221111 011245577788899999999999876521 1126999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy10148 92 FVVLALYYWHNTGIKYI 108 (108)
Q Consensus 92 ~v~~g~~~h~~~~~~~~ 108 (108)
||++|+-+||-|++.|+
T Consensus 272 FV~l~A~cHyYAi~~~L 288 (298)
T KOG4243|consen 272 FVALAAGCHYYAIWKYL 288 (298)
T ss_pred HHHHHcchhHHHHHHHH
Confidence 99999999999999875
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=88.67 E-value=8.1 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhcCC--ccccCCc------cccCCCchHHHHHHHHHHHHHHHHH
Q psy10148 53 MGMYGISGLAFLIYITRFP--ECFFTGK------VDYIGSSHQWWHFFVVLALYYWHNT 103 (108)
Q Consensus 53 ~~~~~~y~~G~~~Y~~~~P--Er~~PG~------FD~~g~SHqifHi~v~~g~~~h~~~ 103 (108)
..+.+.+.+|.++-..... +.+...+ ..+.-+-|-+||+++.+|++.....
T Consensus 175 ~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 175 LFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVF 233 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666677666665532 1111111 2222347999999999999987754
No 8
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=77.57 E-value=3.3 Score=34.73 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=20.9
Q ss_pred cCCccccCCCchHHHHHHHHHHHHHHHHHH
Q psy10148 75 FTGKVDYIGSSHQWWHFFVVLALYYWHNTG 104 (108)
Q Consensus 75 ~PG~FD~~g~SHqifHi~v~~g~~~h~~~~ 104 (108)
.||-|| +|++||.+-++|...-+...
T Consensus 527 l~~f~D----~HDiwH~~SA~alffsf~~l 552 (570)
T PF13965_consen 527 LLGFFD----WHDIWHFLSAIALFFSFLVL 552 (570)
T ss_pred CcCccc----cHHHHHHHHHHHHHHHHHHH
Confidence 467788 79999999999988766543
No 9
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=64.68 E-value=23 Score=26.95 Aligned_cols=39 Identities=31% Similarity=0.616 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCccccCCccccCCCchHHHHHHHHHHHHHHHHHHH
Q psy10148 61 LAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGI 105 (108)
Q Consensus 61 ~G~~~Y~~~~PEr~~PG~FD~~g~SHqifHi~v~~g~~~h~~~~~ 105 (108)
++..+=...+|.-+ +.+| +|.+||...+.-++.+|....
T Consensus 225 lam~LEl~DFpP~~--~~lD----AHALWHl~Tip~~~~wy~Fl~ 263 (267)
T PF04080_consen 225 LAMSLELFDFPPIF--WLLD----AHALWHLATIPPTYLWYDFLI 263 (267)
T ss_pred HHHHHHhhccCccc--ccch----HHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444432 4678 899999999999988887543
No 10
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=53.37 E-value=30 Score=22.95 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=35.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCC
Q psy10148 10 IHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGS 84 (108)
Q Consensus 10 ~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~ 84 (108)
++.+.-..--+++++++.+|.+|-- . . ---+.+.+-.|++..+.....+ |+..|.+.|..|.
T Consensus 30 k~~~~~~~G~~~L~lfg~l~Tl~p~--~------f----GRvYAAYGGvfI~~Sl~W~w~v-dg~~Pd~~D~iGa 91 (107)
T PF02694_consen 30 KSPWWLLPGALSLALFGWLLTLQPA--A------F----GRVYAAYGGVFIVASLLWGWLV-DGVRPDRWDWIGA 91 (107)
T ss_pred CCeeeHhhHHHHHHHHHHHhhcCcc--c------c----hhHHHHhhhhHHHHHHHHHhhh-cCcCCChHHHHhH
Confidence 3334444444555556666664431 1 1 1123455666777776666655 6678999999986
No 11
>KOG3059|consensus
Probab=46.63 E-value=1.4e+02 Score=23.25 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHH-------------------HHHHHHHHHhhhcCCc
Q psy10148 12 PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMY-------------------GISGLAFLIYITRFPE 72 (108)
Q Consensus 12 r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~-------------------~~y~~G~~~Y~~~~PE 72 (108)
+.+++.+.+..+.+++.|+.+.+... +-++.. .....++.++- -.+..+.+++++|.|.
T Consensus 116 ~~lks~~~vt~~ly~lsPVl~TLt~S-iSsDsI-~a~sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~LaSRl~~ 193 (292)
T KOG3059|consen 116 EDLKSIFTVTLFLYGLSPVLKTLTKS-ISSDSI-WAMSVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLASRLEK 193 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhc-CCcchH-HHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHHHhcCC
Confidence 57888999999999999999998633 222221 11122222221 2345678999999988
Q ss_pred c
Q psy10148 73 C 73 (108)
Q Consensus 73 r 73 (108)
+
T Consensus 194 ~ 194 (292)
T KOG3059|consen 194 S 194 (292)
T ss_pred c
Confidence 6
No 12
>PRK02237 hypothetical protein; Provisional
Probab=46.60 E-value=60 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccCCccccCCC
Q psy10148 52 VMGMYGISGLAFLIYITRFPECFFTGKVDYIGS 84 (108)
Q Consensus 52 ~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~ 84 (108)
+.+.+-.|++..+.....+ |+..|.+.|..|.
T Consensus 62 YAAYGGvyI~~Sl~W~w~v-dg~~Pd~~D~iGa 93 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVV-DGVRPDRWDWIGA 93 (109)
T ss_pred HHHhhhHHHHHHHHHHHHh-cCcCCChhHHHhH
Confidence 3455666777776666555 6678999999985
No 13
>KOG2970|consensus
Probab=43.99 E-value=1e+02 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=19.5
Q ss_pred CccccCCCchHHHHHHHHHHHHHHHHHH
Q psy10148 77 GKVDYIGSSHQWWHFFVVLALYYWHNTG 104 (108)
Q Consensus 77 G~FD~~g~SHqifHi~v~~g~~~h~~~~ 104 (108)
+.+| +|.+||...+--+..++...
T Consensus 283 ~~iD----AHALWHlaTIplt~~~~~Fv 306 (319)
T KOG2970|consen 283 WLID----AHALWHLATIPLTILWYDFV 306 (319)
T ss_pred hhcc----hHHHHHhhcCccHHHHHHHh
Confidence 6788 89999999888877777544
No 14
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=42.92 E-value=43 Score=16.37 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=10.1
Q ss_pred HHHHHhhhcCCccc
Q psy10148 61 LAFLIYITRFPECF 74 (108)
Q Consensus 61 ~G~~~Y~~~~PEr~ 74 (108)
.+-.+|+.-.||||
T Consensus 12 ~~YL~~aLl~PErF 25 (25)
T PF09604_consen 12 FVYLFYALLRPERF 25 (25)
T ss_pred HHHHHHHHhCcccC
Confidence 34457788889985
No 15
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=41.47 E-value=81 Score=24.04 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccC
Q psy10148 47 MLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYI 82 (108)
Q Consensus 47 ~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~ 82 (108)
....|....-+.+.+-+++..... |.++||++|+-
T Consensus 28 ~li~Wl~l~nl~~~INaiIW~~n~-~~~~~~wCDI~ 62 (283)
T PF02076_consen 28 SLIFWLFLSNLIYFINAIIWRDND-INWWPVWCDIS 62 (283)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCC-CccCceeeeeh
Confidence 445677778888889999999998 88899999983
No 16
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=35.77 E-value=39 Score=24.30 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccc
Q psy10148 26 GVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFF 75 (108)
Q Consensus 26 ~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~ 75 (108)
.++|++..+....|...+ ....+.+.+++.+++++|+ ++|.-|.
T Consensus 31 I~lPlFFfIvHa~gpgyp-----vqKsLGgivWF~vSaif~a-pfP~Lwk 74 (192)
T PF13210_consen 31 IMLPLFFFIVHAVGPGYP-----VQKSLGGIVWFVVSAIFYA-PFPPLWK 74 (192)
T ss_pred HHHHHHHheeeecCCCch-----HHHhhccchhhhhHHHHhC-CCCcHHH
Confidence 456776665432233222 3445667788889999999 8888764
No 17
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=35.51 E-value=15 Score=21.72 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=6.7
Q ss_pred CCccccCCc
Q psy10148 70 FPECFFTGK 78 (108)
Q Consensus 70 ~PEr~~PG~ 78 (108)
-||||.|-+
T Consensus 44 DPERWLP~~ 52 (59)
T PF08492_consen 44 DPERWLPKR 52 (59)
T ss_pred CccccCchh
Confidence 489998853
No 18
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.51 E-value=8.8 Score=23.72 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.9
Q ss_pred HhhhcCCccccCCcc
Q psy10148 65 IYITRFPECFFTGKV 79 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~F 79 (108)
+++..+||| ||.|
T Consensus 3 ~~~v~iPEr--pGal 15 (81)
T cd04907 3 LFRFEFPER--PGAL 15 (81)
T ss_pred EEEEEcCCC--CCHH
Confidence 467789995 8975
No 19
>COG3730 SrlA Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]
Probab=33.71 E-value=44 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=14.6
Q ss_pred HhhhcCCccccCCccccCCC
Q psy10148 65 IYITRFPECFFTGKVDYIGS 84 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~FD~~g~ 84 (108)
-.+.-.|||..|+..|-.++
T Consensus 86 t~GrflpEk~KPafydaa~s 105 (176)
T COG3730 86 TLGRFLPEKYKPAFYDAAVS 105 (176)
T ss_pred HHhccChhccCccHHHhhhh
Confidence 34445699999998886553
No 20
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=31.12 E-value=1.7e+02 Score=19.72 Aligned_cols=31 Identities=29% Similarity=0.655 Sum_probs=18.7
Q ss_pred HHHHHHhh----hcCCccccCCccccCCCchHHHHHHHHHHHHHHH
Q psy10148 60 GLAFLIYI----TRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWH 101 (108)
Q Consensus 60 ~~G~~~Y~----~~~PEr~~PG~FD~~g~SHqifHi~v~~g~~~h~ 101 (108)
.+|++.|. ++.||- |+ |.+=+.+.+....|-
T Consensus 73 flG~f~ySA~vraqyPei---------GS--NFfp~il~l~L~~Wi 107 (117)
T PF07226_consen 73 FLGLFGYSAFVRAQYPEI---------GS--NFFPSILCLILVFWI 107 (117)
T ss_pred HHHHHHHHHHHHHhchhh---------hh--hHHHHHHHHHHHHHH
Confidence 35555554 467994 43 777776666665553
No 21
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=28.22 E-value=61 Score=17.90 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=11.6
Q ss_pred HhhhcCCccccCCccccCC
Q psy10148 65 IYITRFPECFFTGKVDYIG 83 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~FD~~g 83 (108)
..-.+.||+ .|-.||.-|
T Consensus 13 ~~y~~LP~~-ip~H~~~~G 30 (51)
T PF07853_consen 13 IFYPQLPDQ-IPTHFNANG 30 (51)
T ss_pred HHHHHCChh-hceeeCCCC
Confidence 445688998 565555554
No 22
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=27.46 E-value=81 Score=19.52 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=18.8
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHH
Q psy10148 10 IH-PDIKMLVFVCWAAYGVVPTVHWA 34 (108)
Q Consensus 10 ~~-r~~R~~~f~~~g~~~~~P~~h~~ 34 (108)
+| |.+|..+|++++.++.+-.+-..
T Consensus 15 aPfR~lR~f~y~a~~aSa~iG~~i~~ 40 (75)
T PF11998_consen 15 APFRGLRRFFYGAFGASAGIGLFIFL 40 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 89999999999988666554433
No 23
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=27.09 E-value=90 Score=19.40 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhc
Q psy10148 92 FVVLALYYWHNTGIKY 107 (108)
Q Consensus 92 ~v~~g~~~h~~~~~~~ 107 (108)
...+|.++|..+-+.|
T Consensus 18 v~~lG~wfhiVarlVy 33 (80)
T TIGR02741 18 VFSLGIWFHIVSRLVY 33 (80)
T ss_pred hhHhhHHHHHHHHHHH
Confidence 3445666666555443
No 24
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=27.05 E-value=74 Score=15.71 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=10.7
Q ss_pred HHHHHhhhcCCcccc
Q psy10148 61 LAFLIYITRFPECFF 75 (108)
Q Consensus 61 ~G~~~Y~~~~PEr~~ 75 (108)
.+-.+|+.-.||||.
T Consensus 11 ~~YL~~aLl~PErF~ 25 (26)
T TIGR02115 11 FIYLFYALLRPERFX 25 (26)
T ss_pred HHHHHHHHhCHHhcC
Confidence 344678888899964
No 25
>COG5031 COQ4 Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]
Probab=25.58 E-value=30 Score=25.92 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=10.0
Q ss_pred CCCchHHHHHHH
Q psy10148 82 IGSSHQWWHFFV 93 (108)
Q Consensus 82 ~g~SHqifHi~v 93 (108)
++.+|++||+..
T Consensus 131 ~retHDiyH~Vt 142 (235)
T COG5031 131 WRETHDIYHAVT 142 (235)
T ss_pred HhhhhhHHHHHh
Confidence 588999999854
No 26
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=23.98 E-value=2.3e+02 Score=18.86 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHH
Q psy10148 11 HPDIKMLVFVCWAAY 25 (108)
Q Consensus 11 ~r~~R~~~f~~~g~~ 25 (108)
+.+.|+.+|..++..
T Consensus 65 ~n~~Ra~~Y~~maiv 79 (113)
T PF10233_consen 65 TNWMRAALYCVMAIV 79 (113)
T ss_pred cchHHHHHHHHHHHH
Confidence 468999999998874
No 27
>PRK11056 hypothetical protein; Provisional
Probab=23.88 E-value=2.4e+02 Score=19.07 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=18.7
Q ss_pred HHHHHHHhh----hcCCccccCCccccCCCchHHHHHHHHHHHHHHH
Q psy10148 59 SGLAFLIYI----TRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWH 101 (108)
Q Consensus 59 y~~G~~~Y~----~~~PEr~~PG~FD~~g~SHqifHi~v~~g~~~h~ 101 (108)
..+|++.|. .+.||- |+ |.+=+.+.+....|-
T Consensus 72 FflG~f~ySA~vraeyPei---------GS--NF~p~il~~~L~~Wi 107 (120)
T PRK11056 72 FFLGVFLYSAFVRAEYPEI---------GS--NFFPAVLSVILVFWI 107 (120)
T ss_pred HHHHHHHHHHHHHhcCccc---------cc--chHHHHHHHHHHHHH
Confidence 335555554 467984 43 666666666655553
No 28
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=23.83 E-value=1.2e+02 Score=15.44 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=9.4
Q ss_pred HHHHhhhcCCccc
Q psy10148 62 AFLIYITRFPECF 74 (108)
Q Consensus 62 G~~~Y~~~~PEr~ 74 (108)
.-.+|+.-.||||
T Consensus 17 vYL~~ALlrPErF 29 (29)
T PRK14759 17 IYLTYALLRPERF 29 (29)
T ss_pred HHHHHHHhCcccC
Confidence 3457778889985
No 29
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=23.78 E-value=2.7e+02 Score=19.71 Aligned_cols=64 Identities=9% Similarity=-0.000 Sum_probs=34.1
Q ss_pred ccccccCCC----chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-HHHHHHHHHHHHHHHHHhhhcCCc
Q psy10148 3 LQIPRLNIH----PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNML-LPRVMGMYGISGLAFLIYITRFPE 72 (108)
Q Consensus 3 ~~~p~f~~~----r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~-~~~~~~~~~~y~~G~~~Y~~~~PE 72 (108)
++.|+++.| -..=+..|+++|.++.+- ......+.. .+.. ..+.+.+.+-..-.-+++..|.|.
T Consensus 37 L~kP~w~pp~~~f~~vWtvLy~l~~iSa~lv-----W~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~ 105 (161)
T COG3476 37 LKKPFWLPPEWAFPPVWTVLYALIGISAYLV-----WEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLG 105 (161)
T ss_pred ccCCCCCChHHHhhHHHHHHHHHHHHHHHHH-----HHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 467888776 467788999999876432 222212111 1221 222233333334456777777554
No 30
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.46 E-value=18 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=7.8
Q ss_pred HhhhcCCccccCCcc
Q psy10148 65 IYITRFPECFFTGKV 79 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~F 79 (108)
+++..+||| ||.|
T Consensus 12 ~~~v~~PE~--pGal 24 (91)
T PF00585_consen 12 LFAVEFPER--PGAL 24 (91)
T ss_dssp EEEEE--BS--TTHC
T ss_pred EEEEECCCC--ccHH
Confidence 466789995 8865
No 31
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=22.65 E-value=1e+02 Score=19.21 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhc
Q psy10148 92 FVVLALYYWHNTGIKY 107 (108)
Q Consensus 92 ~v~~g~~~h~~~~~~~ 107 (108)
...+|.++|..+-+.|
T Consensus 18 v~~lG~wfhiVarlVy 33 (80)
T PRK13727 18 VFSLGVWFHIVARLVY 33 (80)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3445666666555443
No 32
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=22.43 E-value=2.8e+02 Score=19.40 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHHHHHHHH------HHHHhhhcCCccc
Q psy10148 17 LVFVCWAAYGVVPTVHWAVIMGG--WDNPIVNMLLPRVMGMYGISGL------AFLIYITRFPECF 74 (108)
Q Consensus 17 ~~f~~~g~~~~~P~~h~~~~~~g--~~~~~~~~~~~~~~~~~~~y~~------G~~~Y~~~~PEr~ 74 (108)
..+..+-......++-|...+.+ ++|+..+..+.|....|..++. |..+-..+.|||.
T Consensus 22 ~ll~~m~~iv~~~V~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~r~~~Hi~vd~l~~~lp~~~ 87 (177)
T COG3090 22 ALLAAMVLIVFLQVFTRYVFNSPISWSEELARLLFVWLIFLGAAYGVREGGHIGVDVLVNLLPPRA 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHhccCCeeeehHHHHhCCHHH
Confidence 34444444556677777765443 3466677778888888887763 4667777888874
No 33
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=22.38 E-value=40 Score=19.07 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=9.0
Q ss_pred HHHhhhcCCcc
Q psy10148 63 FLIYITRFPEC 73 (108)
Q Consensus 63 ~~~Y~~~~PEr 73 (108)
.-.|+.|+||=
T Consensus 24 re~Y~~~FPEL 34 (53)
T PF08060_consen 24 REWYSWHFPEL 34 (53)
T ss_dssp HHHHTTTSTTH
T ss_pred HHHHHccchhH
Confidence 56899999993
No 34
>PF09980 DUF2214: Predicted membrane protein (DUF2214); InterPro: IPR018706 This family has no known function.
Probab=22.35 E-value=1.1e+02 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy10148 13 DIKMLVFVCWAAYGVVPTVHWA 34 (108)
Q Consensus 13 ~~R~~~f~~~g~~~~~P~~h~~ 34 (108)
+.+...|+++|.+++.|.+.-+
T Consensus 80 ~~K~~lfvligllSi~PT~~~i 101 (150)
T PF09980_consen 80 WAKMGLFVLIGLLSIYPTLTFI 101 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999997655
No 35
>KOG0661|consensus
Probab=21.70 E-value=70 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHhhhcCCccccCCccccCCCchHHHHHHHHHHH
Q psy10148 64 LIYITRFPECFFTGKVDYIGSSHQWWHFFVVLAL 97 (108)
Q Consensus 64 ~~Y~~~~PEr~~PG~FD~~g~SHqifHi~v~~g~ 97 (108)
=+|..| .++||.=|+ -|||-||=++|+
T Consensus 202 El~sLr---PLFPG~sE~----Dqi~KIc~VLGt 228 (538)
T KOG0661|consen 202 ELYSLR---PLFPGASEI----DQIYKICEVLGT 228 (538)
T ss_pred HHHHhc---ccCCCCcHH----HHHHHHHHHhCC
Confidence 345555 789997442 499999998875
No 36
>PF03608 EII-GUT: PTS system enzyme II sorbitol-specific factor; InterPro: IPR004699 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.09 E-value=77 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=12.4
Q ss_pred hhcCCccccCCccccC
Q psy10148 67 ITRFPECFFTGKVDYI 82 (108)
Q Consensus 67 ~~~~PEr~~PG~FD~~ 82 (108)
+.-.|||..|..+|..
T Consensus 85 GrFlpEkyKPayydaa 100 (168)
T PF03608_consen 85 GRFLPEKYKPAYYDAA 100 (168)
T ss_pred hccCccccCccHHHHH
Confidence 3345999999999853
No 37
>PF14851 FAM176: FAM176 family
Probab=20.26 E-value=2.6e+02 Score=19.63 Aligned_cols=13 Identities=38% Similarity=0.271 Sum_probs=6.1
Q ss_pred HHHHHhhhcCCcc
Q psy10148 61 LAFLIYITRFPEC 73 (108)
Q Consensus 61 ~G~~~Y~~~~PEr 73 (108)
+.+.-|....|||
T Consensus 9 Laaya~I~~~PE~ 21 (153)
T PF14851_consen 9 LAAYAHIRDNPER 21 (153)
T ss_pred HHHHHHHHhChHH
Confidence 3444444445554
Done!