Query psy10148
Match_columns 108
No_of_seqs 124 out of 887
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:04:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x4w_B Histone H3.2; transcrip 13.2 58 0.002 14.5 0.5 11 68-78 14-24 (26)
2 4fbk_A DNA repair and telomere 11.5 56 0.0019 25.8 0.2 20 68-87 291-312 (472)
3 4fbw_A DNA repair protein RAD3 11.0 59 0.002 25.0 0.2 19 69-87 229-249 (417)
4 2wq4_A Lectin; LUNG, pathogen, 10.9 29 0.00099 22.7 -1.3 12 62-73 72-83 (156)
5 3t1i_A Double-strand break rep 10.5 76 0.0026 24.5 0.7 19 69-87 248-268 (431)
6 3msq_A Putative ubiquinone bio 9.4 1.2E+02 0.004 21.3 1.3 11 83-93 123-133 (224)
7 4h3k_B RNA polymerase II subun 8.6 1.2E+02 0.004 21.6 1.0 30 54-83 98-129 (214)
8 4f4l_A ION transport protein; 8.5 1E+02 0.0036 18.9 0.7 11 92-102 77-87 (112)
9 3arc_B Photosystem II core lig 7.5 64 0.0022 25.7 -0.8 16 68-85 302-317 (504)
10 3mhs_C SAGA-associated factor 7.1 1.2E+02 0.0042 18.9 0.5 11 77-87 54-64 (99)
No 1
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=13.24 E-value=58 Score=14.48 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=7.8
Q ss_pred hcCCccccCCc
Q psy10148 68 TRFPECFFTGK 78 (108)
Q Consensus 68 ~~~PEr~~PG~ 78 (108)
.+.|.|+.||.
T Consensus 14 ~kk~~RyRPGt 24 (26)
T 2x4w_B 14 VXKPHRYRXXX 24 (26)
T ss_pred ccccccccccc
Confidence 34578888884
No 2
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=11.46 E-value=56 Score=25.77 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=15.5
Q ss_pred hcCCccccCCccccC--CCchH
Q psy10148 68 TRFPECFFTGKVDYI--GSSHQ 87 (108)
Q Consensus 68 ~~~PEr~~PG~FD~~--g~SHq 87 (108)
..+||.+.|..+|++ ||.|.
T Consensus 291 ~yipe~ll~~g~DyValGH~H~ 312 (472)
T 4fbk_A 291 SYLPESFIQDFYDFVLWGHEHE 312 (472)
T ss_dssp SSCCGGGSCTTCSEEEEESCCS
T ss_pred ccCChhhhhcCCCEEEecCccc
Confidence 346888888889988 77774
No 3
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=10.96 E-value=59 Score=25.03 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=14.2
Q ss_pred cCCccccCCccccC--CCchH
Q psy10148 69 RFPECFFTGKVDYI--GSSHQ 87 (108)
Q Consensus 69 ~~PEr~~PG~FD~~--g~SHq 87 (108)
.+||.+.|..+|++ ||.|.
T Consensus 229 yip~~l~~~~~DyvalGH~H~ 249 (417)
T 4fbw_A 229 YLPESFIQDFYDFVLWGHEHE 249 (417)
T ss_dssp SCCGGGSCTTCSEEEEESCCS
T ss_pred cCchhHhhcCCCEEEecCccc
Confidence 45788888888887 67664
No 4
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=10.91 E-value=29 Score=22.74 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=10.3
Q ss_pred HHHHhhhcCCcc
Q psy10148 62 AFLIYITRFPEC 73 (108)
Q Consensus 62 G~~~Y~~~~PEr 73 (108)
|.+-|.+|+||.
T Consensus 72 g~ftysskipe~ 83 (156)
T 2wq4_A 72 GCFTYSSKVPES 83 (156)
T ss_dssp EEEECSSSSCSS
T ss_pred cceeecccCCcc
Confidence 578899999995
No 5
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=10.45 E-value=76 Score=24.51 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=14.8
Q ss_pred cCCccccCCccccC--CCchH
Q psy10148 69 RFPECFFTGKVDYI--GSSHQ 87 (108)
Q Consensus 69 ~~PEr~~PG~FD~~--g~SHq 87 (108)
.+||.+.|..+|++ ||.|.
T Consensus 248 ~ip~~l~~~~~Dyv~lGH~H~ 268 (431)
T 3t1i_A 248 FIPEQFLDDFIDLVIWGHEHE 268 (431)
T ss_dssp SCCGGGSCTTCCEEEECSCCS
T ss_pred cCCHhHhhCCCCEEEeccccc
Confidence 46888888888887 77774
No 6
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=9.43 E-value=1.2e+02 Score=21.32 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=8.9
Q ss_pred CCchHHHHHHH
Q psy10148 83 GSSHQWWHFFV 93 (108)
Q Consensus 83 g~SHqifHi~v 93 (108)
...|++||++.
T Consensus 123 re~HD~~HvLt 133 (224)
T 3msq_A 123 RSTHDIYHVVA 133 (224)
T ss_dssp HHHHHHHHHHH
T ss_pred hcchhhhhhcc
Confidence 35899999975
No 7
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=8.55 E-value=1.2e+02 Score=21.57 Aligned_cols=30 Identities=23% Similarity=-0.032 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhcCCcccc--CCccccCC
Q psy10148 54 GMYGISGLAFLIYITRFPECFF--TGKVDYIG 83 (108)
Q Consensus 54 ~~~~~y~~G~~~Y~~~~PEr~~--PG~FD~~g 83 (108)
.-|++..+.-=--.-+-||||. .+.||++-
T Consensus 98 ~NGlL~MLdRN~~iK~~PER~Q~~~~~fDvVi 129 (214)
T 4h3k_B 98 QNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 129 (214)
T ss_dssp HTSHHHHHHHHHTTCSSCCBGGGCCCCCSEEE
T ss_pred HcCcHHHHhCCccccCCChhhhccCCCccEEE
Confidence 3355554554444556699995 36688764
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=8.46 E-value=1e+02 Score=18.87 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q psy10148 92 FVVLALYYWHN 102 (108)
Q Consensus 92 ~v~~g~~~h~~ 102 (108)
++++|++.-.|
T Consensus 77 fi~i~~fi~lN 87 (112)
T 4f4l_A 77 FIMLTTFTVLN 87 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 9
>3arc_B Photosystem II core light harvesting protein CP47; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Probab=7.48 E-value=64 Score=25.71 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=10.9
Q ss_pred hcCCccccCCccccCCCc
Q psy10148 68 TRFPECFFTGKVDYIGSS 85 (108)
Q Consensus 68 ~~~PEr~~PG~FD~~g~S 85 (108)
+++|||+. -+||+|+|
T Consensus 302 ~~ipekl~--fydyign~ 317 (504)
T 3arc_B 302 SAIPEKLA--FYDYIGNN 317 (504)
T ss_dssp HTSCHHHH--HHTBGGGC
T ss_pred hhCchhhh--hhhhccCC
Confidence 36788753 46888876
No 10
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=7.06 E-value=1.2e+02 Score=18.86 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=9.1
Q ss_pred CccccCCCchH
Q psy10148 77 GKVDYIGSSHQ 87 (108)
Q Consensus 77 G~FD~~g~SHq 87 (108)
|..|++|++++
T Consensus 54 ~~lDIfG~~~~ 64 (99)
T 3mhs_C 54 GSLDINGLQKQ 64 (99)
T ss_dssp SCSCTTSCCCC
T ss_pred CCcccCCCcCc
Confidence 57899999875
Done!