Query psy10148
Match_columns 108
No_of_seqs 124 out of 887
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:05:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10148.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10148hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 56.6 0.97 7E-05 26.3 -0.2 13 65-79 5-17 (88)
2 d1ik7a_ a.77.1.2 (A:) Pelle de 41.8 6 0.00044 20.7 1.5 27 79-105 10-38 (52)
3 d1tdja3 d.58.18.2 (A:424-514) 39.0 2.1 0.00015 25.0 -0.7 13 65-79 12-24 (91)
4 d1t1ra3 c.2.1.3 (A:275-300) 1- 18.3 26 0.0019 15.5 1.2 14 64-77 5-18 (26)
5 d1bu2a2 a.74.1.1 (A:149-250) V 18.1 6.9 0.0005 22.5 -1.1 16 65-80 12-27 (102)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 15.7 52 0.0038 14.2 2.6 14 55-68 4-17 (27)
7 d1sxjb2 c.37.1.20 (B:7-230) Re 14.3 29 0.0021 21.6 1.2 18 72-89 7-25 (224)
8 d1iqpa2 c.37.1.20 (A:2-232) Re 11.8 34 0.0025 21.3 0.9 17 72-88 16-33 (231)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 10.8 91 0.0066 14.3 3.2 15 55-69 13-27 (34)
10 d1ncwh1 b.1.1.1 (H:1-113) Immu 8.2 49 0.0036 19.6 0.6 13 73-85 100-112 (119)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=56.59 E-value=0.97 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.4
Q ss_pred HhhhcCCccccCCcc
Q psy10148 65 IYITRFPECFFTGKV 79 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~F 79 (108)
+++..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 467889995 9975
No 2
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=41.80 E-value=6 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.0
Q ss_pred cccCCC--chHHHHHHHHHHHHHHHHHHH
Q psy10148 79 VDYIGS--SHQWWHFFVVLALYYWHNTGI 105 (108)
Q Consensus 79 FD~~g~--SHqifHi~v~~g~~~h~~~~~ 105 (108)
.++||+ .|.+.-+|+++.-.-|++|+.
T Consensus 10 L~~Wg~q~NHTi~eLF~ll~~mk~~~aM~ 38 (52)
T d1ik7a_ 10 LNIWGGQYNHTVQTLFALFKKLKLHNAMR 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcccccHHHHHHHHHHHHHHHHHH
Confidence 356765 799999999999999999875
No 3
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.00 E-value=2.1 Score=24.98 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=10.0
Q ss_pred HhhhcCCccccCCcc
Q psy10148 65 IYITRFPECFFTGKV 79 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~F 79 (108)
+|+..+||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 567789995 8864
No 4
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=18.31 E-value=26 Score=15.48 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=10.7
Q ss_pred HHhhhcCCccccCC
Q psy10148 64 LIYITRFPECFFTG 77 (108)
Q Consensus 64 ~~Y~~~~PEr~~PG 77 (108)
+-|+.-.|||..-|
T Consensus 5 IA~aLa~PeRi~sg 18 (26)
T d1t1ra3 5 IAHTMAWPNRVNSG 18 (26)
T ss_dssp HHHHHHTTSCCCCC
T ss_pred hhhhccCccccccC
Confidence 56788899997655
No 5
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=18.07 E-value=6.9 Score=22.51 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=12.2
Q ss_pred HhhhcCCccccCCccc
Q psy10148 65 IYITRFPECFFTGKVD 80 (108)
Q Consensus 65 ~Y~~~~PEr~~PG~FD 80 (108)
-.+.|+||.++|-.|+
T Consensus 12 c~alkipe~~wpql~e 27 (102)
T d1bu2a2 12 CNALKIPEDLWPQLYE 27 (102)
T ss_dssp HHHTTCCTTSHHHHHH
T ss_pred hhhccCcHHHhHHHHH
Confidence 4688999998876554
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.71 E-value=52 Score=14.24 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhh
Q psy10148 55 MYGISGLAFLIYIT 68 (108)
Q Consensus 55 ~~~~y~~G~~~Y~~ 68 (108)
+.+.-++|..||+.
T Consensus 4 gli~~tl~glf~aa 17 (27)
T d2e74g1 4 GLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH
Confidence 34444566677765
No 7
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.30 E-value=29 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=12.9
Q ss_pred ccccCCcc-ccCCCchHHH
Q psy10148 72 ECFFTGKV-DYIGSSHQWW 89 (108)
Q Consensus 72 Er~~PG~F-D~~g~SHqif 89 (108)
||+.|.+| |++||.+..=
T Consensus 7 eKyrP~~~~d~ig~~~~~~ 25 (224)
T d1sxjb2 7 EKYRPQVLSDIVGNKETID 25 (224)
T ss_dssp HHTCCSSGGGCCSCTHHHH
T ss_pred hHhCCCCHHHhcCCHHHHH
Confidence 67788664 7789887653
No 8
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.81 E-value=34 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=12.3
Q ss_pred ccccCCcc-ccCCCchHH
Q psy10148 72 ECFFTGKV-DYIGSSHQW 88 (108)
Q Consensus 72 Er~~PG~F-D~~g~SHqi 88 (108)
||+.|..| |++|+.+.+
T Consensus 16 ~ky~P~~~~diig~~~~~ 33 (231)
T d1iqpa2 16 EKYRPQRLDDIVGQEHIV 33 (231)
T ss_dssp HHTCCCSTTTCCSCHHHH
T ss_pred HHhCCCCHHHccCcHHHH
Confidence 67788775 788887643
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.82 E-value=91 Score=14.32 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhc
Q psy10148 55 MYGISGLAFLIYITR 69 (108)
Q Consensus 55 ~~~~y~~G~~~Y~~~ 69 (108)
.+.+-.+|.+||.+-
T Consensus 13 ~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 13 MGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhhHhheeeeeeeee
Confidence 455566888999863
No 10
>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}
Probab=8.20 E-value=49 Score=19.62 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=9.7
Q ss_pred cccCCccccCCCc
Q psy10148 73 CFFTGKVDYIGSS 85 (108)
Q Consensus 73 r~~PG~FD~~g~S 85 (108)
++.++.||+||+.
T Consensus 100 ~~~~~~~d~WGqG 112 (119)
T d1ncwh1 100 LWYDGGAGSWGQG 112 (119)
T ss_dssp ETTTSCSCEECCC
T ss_pred cccCCCCcccCCC
Confidence 3457789999975
Done!