RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10148
         (108 letters)



>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT
          structural genomics, JCSG, protein structure
          initiative, PS unknown function; HET: UNL; 2.46A
          {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
          Length = 187

 Score = 26.8 bits (60), Expect = 1.4
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 51 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVV 94
          +++ +YGI G   +   T   +     +   +    +     +V
Sbjct: 25 KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELV 68


>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium, NESG; 2.70A {Haemophilus
          influenzae}
          Length = 177

 Score = 26.0 bits (58), Expect = 2.1
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 42 NPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW 88
          +  V   + ++   YGI G   +   T   E  F  +  ++    +W
Sbjct: 1  HIEV---VGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEW 44


>3npg_A Uncharacterized DUF364 family protein; protein with unknown
           function from DUF364 family, structural genomics; 2.70A
           {Pyrococcus horikoshii}
          Length = 249

 Score = 25.8 bits (56), Expect = 3.2
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 18  VFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITR--FPECFF 75
            +     Y ++P V   +      + IVN  L  ++     + L  +   T    PE   
Sbjct: 152 TYSDTLEYHILPEVDGIIASA---SCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLK 208

Query: 76  TGKVDYIGSSH 86
             KV ++ S  
Sbjct: 209 GTKVTHLASMK 219


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.148    0.539 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,903,087
Number of extensions: 104289
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 19
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.4 bits)