RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10148
         (108 letters)



>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM,
          N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 89

 Score = 26.4 bits (58), Expect = 0.32
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 51 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVV 94
          +++ +YGI G   +   T   +     +   +    +     +V
Sbjct: 7  KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELV 50


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 25.0 bits (54), Expect = 2.6
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 46  NMLLPRVMGMYGISGLAFLIYITRFPECFFTGKV-----DYIGSSH 86
           N LLP+ +GMY ++      Y+      F          D  GS+ 
Sbjct: 144 NTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTV 189


>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia
          coli [TaxId: 562]}
          Length = 70

 Score = 22.4 bits (48), Expect = 8.4
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 9  NIHPDIKMLVFVC 21
          +IHP  + +   C
Sbjct: 4  DIHPKYEEITASC 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.148    0.539 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,169
Number of extensions: 21904
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 12
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.2 bits)