BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10158
(1266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T7A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp At Ph 5.2
pdb|3T9A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 7.0
pdb|3T9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 5.2
pdb|3T9C|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And Inositol Hexakisphosphate
(Ip6)
pdb|3T9D|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And 5- (Pp)-Ip5 (5-Ip7)
pdb|3T9E|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp, 5-(Pp)-Ip5 (5-Ip7) And Mgf3
(Transition State Mimic)
pdb|3T9F|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And 1,5- (Pp)2-Ip4 (1,5-Ip8)
pdb|4HN2|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And A Substrate Analog 5pa-Ip5
Length = 330
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/325 (76%), Positives = 291/325 (89%), Gaps = 1/325 (0%)
Query: 49 KQVIVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETI-QKPVDEWPIVDCLISFH 107
+Q++VG+C+MAKKS+SKPMKEIL R+ F++I ++VF EE I +PV+ WP+ DCLISFH
Sbjct: 6 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 65
Query: 108 SKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDP 167
SKGFPL+KA+ YA LR PFVIN+LNMQY IQDRR+VY++L+ EGI +PRYA+L+R+ +P
Sbjct: 66 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 125
Query: 168 VKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSV 227
+ L+E EDHVEVNG VF KPFVEKPVSAEDHN+YIYYPTSAGGGSQRLFRKIGSRSSV
Sbjct: 126 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 185
Query: 228 YSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 287
YSPES VRK+GS+IYE+FMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKE+R
Sbjct: 186 YSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 245
Query: 288 YPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNGFSFVKNSNKYYDDSAKI 347
YPVIL+ EKLI+ KVCLAFKQTVCGFDLLRANG+S+VCDVNGFSFVKNS KYYDD AKI
Sbjct: 246 YPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKI 305
Query: 348 LGNMILRELAPTLHIPWSVPFQLDD 372
LGN+++RELAP HIPWS+P + +D
Sbjct: 306 LGNIVMRELAPQFHIPWSIPLEAED 330
>pdb|3T54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Atp And Cadmium
pdb|3T99|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And In The Absence Of Cadmium At Ph
7.0
Length = 334
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/325 (76%), Positives = 291/325 (89%), Gaps = 1/325 (0%)
Query: 49 KQVIVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETI-QKPVDEWPIVDCLISFH 107
+Q++VG+C+MAKKS+SKPMKEIL R+ F++I ++VF EE I +PV+ WP+ DCLISFH
Sbjct: 10 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 69
Query: 108 SKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDP 167
SKGFPL+KA+ YA LR PFVIN+LNMQY IQDRR+VY++L+ EGI +PRYA+L+R+ +P
Sbjct: 70 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 129
Query: 168 VKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSV 227
+ L+E EDHVEVNG VF KPFVEKPVSAEDHN+YIYYPTSAGGGSQRLFRKIGSRSSV
Sbjct: 130 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 189
Query: 228 YSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 287
YSPES VRK+GS+IYE+FMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKE+R
Sbjct: 190 YSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 249
Query: 288 YPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNGFSFVKNSNKYYDDSAKI 347
YPVIL+ EKLI+ KVCLAFKQTVCGFDLLRANG+S+VCDVNGFSFVKNS KYYDD AKI
Sbjct: 250 YPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKI 309
Query: 348 LGNMILRELAPTLHIPWSVPFQLDD 372
LGN+++RELAP HIPWS+P + +D
Sbjct: 310 LGNIVMRELAPQFHIPWSIPLEAED 334
>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1-
Syntrophin
Length = 178
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 1149 PASSPPKYP---------STPIEHSLSGARLGWSGPPSFVSESGPSSP 1187
P ++PP+ P S ++S G +GW PP+ + PSSP
Sbjct: 63 PGAAPPQLPEALLLQREVSPYFKNSAGGTSVGWDSPPASPLQRQPSSP 110
>pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|A Chain A, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|N Chain N, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|A Chain A, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|N Chain N, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|A Chain A, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|N Chain N, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|A Chain A, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|N Chain N, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
Length = 514
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 814 YSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSEL 873
++H + + G V TR YFTS + I ++ T ++ ++H + +W AM + L
Sbjct: 288 WAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFL 347
Query: 874 NYMSQVVIMLYEDPTKDPTSDERFHIELHF----SPGVNCCVQKNLPPG-PGFRPHSRND 928
+ + ++ + + D + +++ HF S G + P F ++ ND
Sbjct: 348 FTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLND 407
Query: 929 QKKNL 933
+
Sbjct: 408 TWAKI 412
>pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|2Y69|A Chain A, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|N Chain N, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2YBB|L Chain L, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 514
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 814 YSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSEL 873
++H + + G V TR YFTS + I ++ T ++ ++H + +W AM + L
Sbjct: 288 WAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFL 347
Query: 874 NYMSQVVIMLYEDPTKDPTSDERFHIELHF----SPGVNCCVQKNLPPG-PGFRPHSRND 928
+ + ++ + + D + +++ HF S G + P F ++ ND
Sbjct: 348 FTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLND 407
Query: 929 QKKNL 933
+
Sbjct: 408 TWAKI 412
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 32/179 (17%)
Query: 379 TFGKMMELRCVVAVIRHGDRTPKQKMKV--EVRHPKFFEIFYKYG--------GQNDGHV 428
T G ++L+ V R+ + PK+ V +R PK + + G ++D +
Sbjct: 15 TLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKL 74
Query: 429 KLKK-PKQLQEVLDIARMLLTEIENNSADPEIEEKQGKLEQLKGVLEMYGHFSGINRKVQ 487
+K + +Q++ A+ +I+N +++ +L+G+ +G FS
Sbjct: 75 ASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPI----RLEGLAFSHGTFS------- 123
Query: 488 MKYQPKGRPRGSSSDEEEEDVCKPKEPSLVLILKWGGELTPAGRIQAEELGRVFRCMYP 546
Y+P+ P + + +P +VL++ G++ G Q EE+ + F +YP
Sbjct: 124 -SYEPELFP---------GLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYP 172
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
Length = 240
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 378 TTFGKMMELRCVVAVIRHGDRTPKQKMKV--EVRHPKFFEIFYKYG--------GQNDGH 427
T G ++L+ V R+ + PK+ V +R PK + + G ++D
Sbjct: 74 VTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSK 133
Query: 428 VKLKK-PKQLQEVLDIARMLLTEIENNSADPEIEEKQGKLEQLKGVLEMYGHFSGINRKV 486
+ +K + +Q++ A+ +I+N +++ +L+G+ +G FS
Sbjct: 134 LASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPI----RLEGLAFSHGTFSS----- 184
Query: 487 QMKYQPKGRPRGSSSDEEEEDVCKPKEPSLVLILKWGGELTPAGRIQAEELGRVFRCMYP 546
Y+P+ P + + +P +VL++ G++ G Q EE+ + F +YP
Sbjct: 185 ---YEPELFP---------GLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYP 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,688,177
Number of Sequences: 62578
Number of extensions: 1668049
Number of successful extensions: 3306
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3298
Number of HSP's gapped (non-prelim): 20
length of query: 1266
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1156
effective length of database: 8,089,757
effective search space: 9351759092
effective search space used: 9351759092
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)