Query psy10158
Match_columns 1266
No_of_seqs 248 out of 377
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057|consensus 100.0 1E-294 3E-299 2491.4 61.6 821 40-904 30-858 (1018)
2 COG0189 RimK Glutathione synth 99.9 7.1E-27 1.5E-31 258.9 12.9 248 52-330 32-287 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 8.6E-26 1.9E-30 231.1 6.9 173 137-337 1-174 (190)
4 PF00328 His_Phos_2: Histidine 99.9 7.9E-24 1.7E-28 225.2 20.6 334 385-904 1-347 (347)
5 PRK10446 ribosomal protein S6 99.9 1.2E-22 2.7E-27 220.5 14.9 247 52-330 2-263 (300)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 9.3E-22 2E-26 206.4 13.6 244 53-331 2-255 (277)
7 KOG1057|consensus 99.9 2.2E-23 4.8E-28 244.5 1.2 137 748-909 797-934 (1018)
8 PLN02941 inositol-tetrakisphos 99.9 4.4E-21 9.6E-26 214.0 19.2 273 43-351 14-323 (328)
9 TIGR02144 LysX_arch Lysine bio 99.9 2.9E-21 6.4E-26 205.0 15.6 234 66-331 11-253 (280)
10 PRK05246 glutathione synthetas 99.8 2.8E-21 6E-26 212.3 10.0 197 95-330 75-284 (316)
11 TIGR01380 glut_syn glutathione 99.8 9.8E-21 2.1E-25 208.3 10.5 197 95-330 74-283 (312)
12 PRK12458 glutathione synthetas 99.8 5.5E-20 1.2E-24 205.1 11.0 200 95-331 75-297 (338)
13 TIGR02291 rimK_rel_E_lig alpha 99.7 7.5E-17 1.6E-21 179.7 11.6 180 128-331 26-269 (317)
14 cd07061 HP_HAP_like Histidine 99.7 4.7E-16 1E-20 163.1 15.3 62 524-592 17-78 (242)
15 TIGR03103 trio_acet_GNAT GNAT- 99.6 2E-16 4.4E-21 186.6 9.3 174 127-330 285-520 (547)
16 PRK01372 ddl D-alanine--D-alan 99.6 2E-14 4.3E-19 155.3 18.8 245 50-330 4-268 (304)
17 TIGR02068 cya_phycin_syn cyano 99.6 3.7E-15 7.9E-20 184.0 9.7 172 130-331 204-445 (864)
18 PRK14016 cyanophycin synthetas 99.5 1.9E-14 4.1E-19 175.0 12.2 180 127-335 202-450 (727)
19 PRK02471 bifunctional glutamat 99.5 2E-13 4.4E-18 166.7 15.1 177 127-330 476-724 (752)
20 TIGR01205 D_ala_D_alaTIGR D-al 99.4 5.7E-12 1.2E-16 136.8 18.4 208 99-330 63-283 (315)
21 PRK14571 D-alanyl-alanine synt 99.3 2.8E-11 6.2E-16 131.8 18.4 231 65-332 19-265 (299)
22 TIGR01435 glu_cys_lig_rel glut 99.3 1E-12 2.2E-17 159.8 6.8 170 134-330 470-710 (737)
23 PF02955 GSH-S_ATP: Prokaryoti 99.3 9.2E-13 2E-17 136.5 4.9 123 190-332 34-162 (173)
24 PRK06849 hypothetical protein; 99.3 2.6E-11 5.5E-16 136.6 12.9 194 100-330 77-274 (389)
25 PRK12767 carbamoyl phosphate s 99.2 4.3E-11 9.3E-16 130.4 12.0 194 100-330 70-268 (326)
26 PRK14569 D-alanyl-alanine synt 99.2 2.9E-10 6.2E-15 124.7 16.6 228 65-329 22-262 (296)
27 TIGR01142 purT phosphoribosylg 99.1 3.9E-10 8.5E-15 125.8 13.2 206 100-343 63-290 (380)
28 PRK01966 ddl D-alanyl-alanine 99.1 5.2E-10 1.1E-14 124.6 14.1 205 99-330 81-299 (333)
29 PRK14572 D-alanyl-alanine synt 99.1 1.5E-09 3.3E-14 121.6 17.6 188 115-330 105-313 (347)
30 PRK14568 vanB D-alanine--D-lac 99.1 2.4E-09 5.3E-14 119.7 17.7 198 99-329 90-307 (343)
31 PRK13790 phosphoribosylamine-- 99.0 9.8E-10 2.1E-14 124.8 11.8 193 110-330 36-248 (379)
32 PRK14570 D-alanyl-alanine synt 99.0 8E-09 1.7E-13 117.5 15.3 206 99-330 87-314 (364)
33 PF13535 ATP-grasp_4: ATP-gras 98.9 1.3E-09 2.7E-14 108.0 6.1 162 136-330 1-177 (184)
34 PRK09288 purT phosphoribosylgl 98.9 5.5E-09 1.2E-13 117.3 10.1 194 100-330 76-283 (395)
35 TIGR01161 purK phosphoribosyla 98.9 1.1E-08 2.3E-13 114.3 11.7 193 100-330 61-263 (352)
36 PRK07206 hypothetical protein; 98.8 8.6E-09 1.9E-13 116.7 9.9 200 100-329 71-285 (416)
37 PF05770 Ins134_P3_kin: Inosit 98.8 3.8E-09 8.2E-14 118.4 6.6 258 48-343 5-300 (307)
38 PRK00885 phosphoribosylamine-- 98.8 1.3E-08 2.8E-13 116.3 10.7 191 115-330 77-286 (420)
39 PRK05294 carB carbamoyl phosph 98.8 1.3E-08 2.8E-13 129.2 10.1 195 99-330 629-839 (1066)
40 PF02655 ATP-grasp_3: ATP-gras 98.8 1.2E-08 2.6E-13 103.3 7.1 146 138-329 2-155 (161)
41 PRK02186 argininosuccinate lya 98.8 2.7E-08 5.7E-13 124.2 11.4 204 92-330 63-275 (887)
42 PRK08463 acetyl-CoA carboxylas 98.7 3E-08 6.5E-13 116.0 10.1 201 99-330 73-291 (478)
43 TIGR01369 CPSaseII_lrg carbamo 98.7 2.6E-08 5.6E-13 126.4 9.9 197 99-330 629-839 (1050)
44 PRK06019 phosphoribosylaminoim 98.7 7.2E-08 1.6E-12 109.2 11.9 191 99-330 63-265 (372)
45 PRK05586 biotin carboxylase; V 98.7 4.5E-08 9.8E-13 113.1 10.5 196 98-330 73-291 (447)
46 PF14397 ATPgrasp_ST: Sugar-tr 98.7 4E-08 8.6E-13 108.7 9.2 184 129-331 16-257 (285)
47 PRK08462 biotin carboxylase; V 98.7 1.9E-08 4.1E-13 115.7 7.0 198 99-330 76-293 (445)
48 PRK07178 pyruvate carboxylase 98.7 5.6E-08 1.2E-12 113.5 10.6 202 99-330 73-290 (472)
49 PRK08591 acetyl-CoA carboxylas 98.6 5.9E-08 1.3E-12 111.6 8.6 198 99-330 74-291 (451)
50 TIGR00877 purD phosphoribosyla 98.6 9.4E-08 2E-12 109.0 10.1 199 100-330 65-288 (423)
51 PRK08654 pyruvate carboxylase 98.6 7.9E-08 1.7E-12 113.6 9.5 195 100-330 75-290 (499)
52 TIGR00514 accC acetyl-CoA carb 98.6 2E-07 4.4E-12 107.8 10.5 198 99-330 74-291 (449)
53 PRK06111 acetyl-CoA carboxylas 98.6 1.1E-07 2.4E-12 109.0 8.2 199 100-330 75-291 (450)
54 PF15632 ATPgrasp_Ter: ATP-gra 98.5 9.7E-07 2.1E-11 100.1 12.8 195 100-329 67-278 (329)
55 PLN02257 phosphoribosylamine-- 98.5 9.6E-07 2.1E-11 103.0 12.6 193 111-330 72-288 (434)
56 PRK06395 phosphoribosylamine-- 98.5 4.6E-07 9.9E-12 105.5 9.4 204 100-329 66-290 (435)
57 PRK12815 carB carbamoyl phosph 98.4 4.6E-07 1E-11 115.5 9.9 194 100-330 631-837 (1068)
58 TIGR01235 pyruv_carbox pyruvat 98.4 3.2E-07 7E-12 117.4 8.1 197 100-329 75-290 (1143)
59 PRK12833 acetyl-CoA carboxylas 98.4 1.2E-06 2.6E-11 102.5 11.0 197 99-330 77-294 (467)
60 PLN02735 carbamoyl-phosphate s 98.3 9.3E-07 2E-11 113.1 9.0 195 99-330 649-874 (1102)
61 PRK14573 bifunctional D-alanyl 98.3 4.8E-06 1E-10 103.4 14.6 255 49-329 450-753 (809)
62 PRK12999 pyruvate carboxylase; 98.3 1.4E-06 3E-11 111.8 10.0 198 99-330 78-295 (1146)
63 PRK05294 carB carbamoyl phosph 98.3 1.8E-06 3.9E-11 110.1 10.7 194 99-329 82-301 (1066)
64 PLN02948 phosphoribosylaminoim 98.3 3.5E-06 7.6E-11 101.6 12.4 193 100-329 84-287 (577)
65 PLN02735 carbamoyl-phosphate s 98.3 2.7E-06 5.9E-11 108.9 12.0 195 99-330 98-319 (1102)
66 COG1821 Predicted ATP-utilizin 98.3 3E-06 6.4E-11 93.3 10.4 152 114-330 93-254 (307)
67 COG1181 DdlA D-alanine-D-alani 98.2 1.4E-05 3E-10 90.4 14.7 236 67-330 23-284 (317)
68 PF07478 Dala_Dala_lig_C: D-al 98.2 4E-07 8.7E-12 96.2 1.9 158 146-331 1-174 (203)
69 PRK13789 phosphoribosylamine-- 98.2 4.9E-06 1.1E-10 96.8 10.3 171 133-331 102-294 (426)
70 PF02750 Synapsin_C: Synapsin, 98.1 3.5E-06 7.6E-11 89.8 6.5 127 187-333 50-179 (203)
71 TIGR01369 CPSaseII_lrg carbamo 98.1 9.8E-06 2.1E-10 103.5 11.7 195 99-330 81-300 (1050)
72 PRK06524 biotin carboxylase-li 98.1 7.3E-06 1.6E-10 97.3 8.5 185 116-329 118-320 (493)
73 PRK12815 carB carbamoyl phosph 98.0 1.9E-05 4.2E-10 101.1 11.4 194 99-329 82-300 (1068)
74 KOG3720|consensus 98.0 0.00024 5.2E-09 83.0 19.1 64 524-593 69-133 (411)
75 TIGR02712 urea_carbox urea car 98.0 1.5E-05 3.2E-10 103.1 10.2 199 99-330 73-290 (1201)
76 PF14398 ATPgrasp_YheCD: YheC/ 98.0 2.2E-05 4.8E-10 86.2 9.9 176 123-331 7-232 (262)
77 PRK05784 phosphoribosylamine-- 97.8 0.00011 2.4E-09 87.3 11.2 199 100-329 70-307 (486)
78 PRK10173 glucose-1-phosphatase 97.7 0.0034 7.4E-08 73.8 21.5 65 523-592 68-133 (413)
79 PRK13278 purP 5-formaminoimida 97.5 0.001 2.2E-08 76.8 13.4 164 130-331 114-311 (358)
80 COG0439 AccC Biotin carboxylas 97.4 0.00051 1.1E-08 81.3 8.8 197 99-329 74-290 (449)
81 cd07040 HP Histidine phosphata 97.3 0.00035 7.7E-09 67.5 6.1 52 520-588 20-71 (153)
82 COG2232 Predicted ATP-dependen 97.1 0.0013 2.8E-08 75.3 8.3 152 129-330 110-272 (389)
83 PRK13277 5-formaminoimidazole- 96.9 0.0044 9.5E-08 72.0 9.9 163 138-341 125-327 (366)
84 PF02786 CPSase_L_D2: Carbamoy 96.8 0.00033 7E-09 75.3 0.2 164 139-331 1-179 (211)
85 COG0027 PurT Formate-dependent 96.3 0.0087 1.9E-07 68.4 7.5 213 53-324 36-277 (394)
86 COG0458 CarB Carbamoylphosphat 96.1 0.038 8.3E-07 65.0 11.3 194 100-329 71-287 (400)
87 KOG3895|consensus 95.8 0.0047 1E-07 71.0 2.3 180 115-333 179-368 (488)
88 PRK10172 phosphoanhydride phos 95.8 0.01 2.2E-07 70.4 4.9 65 523-592 70-135 (436)
89 TIGR03162 ribazole_cobC alpha- 95.7 0.014 3E-07 59.2 5.1 47 522-587 20-66 (177)
90 KOG3672|consensus 95.6 0.043 9.3E-07 64.2 8.7 70 524-598 167-236 (487)
91 PF00300 His_Phos_1: Histidine 95.5 0.023 4.9E-07 55.3 5.3 46 525-587 25-70 (158)
92 COG0406 phoE Broad specificity 95.2 0.029 6.4E-07 58.5 5.6 48 525-589 28-75 (208)
93 PRK03482 phosphoglycerate muta 95.1 0.032 6.9E-07 59.0 5.5 43 525-586 27-69 (215)
94 cd07067 HP_PGM_like Histidine 95.1 0.041 8.9E-07 54.2 5.8 46 525-587 25-70 (153)
95 PTZ00123 phosphoglycerate muta 94.9 0.041 8.8E-07 59.8 5.7 46 525-587 14-59 (236)
96 PTZ00122 phosphoglycerate muta 94.7 0.049 1.1E-06 61.7 5.8 52 526-588 126-177 (299)
97 TIGR03848 MSMEG_4193 probable 94.5 0.05 1.1E-06 57.1 5.0 44 525-587 26-69 (204)
98 PRK14115 gpmA phosphoglyceromu 94.3 0.065 1.4E-06 58.9 5.6 46 525-587 26-71 (247)
99 PRK13463 phosphatase PhoE; Pro 94.2 0.06 1.3E-06 56.9 4.9 43 525-586 28-70 (203)
100 PRK13462 acid phosphatase; Pro 94.1 0.063 1.4E-06 57.2 4.9 42 525-583 31-72 (203)
101 PRK15004 alpha-ribazole phosph 94.1 0.068 1.5E-06 56.0 4.9 43 525-586 26-68 (199)
102 PF01071 GARS_A: Phosphoribosy 94.0 0.044 9.6E-07 59.1 3.4 163 139-329 2-186 (194)
103 PRK15416 lipopolysaccharide co 93.9 0.086 1.9E-06 57.2 5.4 43 525-585 79-121 (201)
104 PRK14118 gpmA phosphoglyceromu 93.7 0.099 2.1E-06 56.5 5.6 46 525-587 26-71 (227)
105 PRK14116 gpmA phosphoglyceromu 93.7 0.093 2E-06 56.7 5.3 45 525-586 27-71 (228)
106 TIGR00249 sixA phosphohistidin 93.5 0.13 2.8E-06 52.6 5.7 46 525-587 22-67 (152)
107 TIGR01258 pgm_1 phosphoglycera 93.5 0.12 2.6E-06 56.9 5.8 46 525-587 26-71 (245)
108 PRK01295 phosphoglyceromutase; 93.5 0.12 2.7E-06 55.0 5.7 46 525-587 28-73 (206)
109 COG0026 PurK Phosphoribosylami 93.4 0.37 8.1E-06 56.6 9.8 173 115-323 76-257 (375)
110 PF14305 ATPgrasp_TupA: TupA-l 93.4 1 2.2E-05 49.9 12.6 173 134-328 15-214 (239)
111 PRK01112 phosphoglyceromutase; 93.2 0.13 2.7E-06 56.1 5.4 44 525-587 27-70 (228)
112 smart00855 PGAM Phosphoglycera 93.0 0.17 3.7E-06 50.4 5.5 50 522-587 22-71 (155)
113 PRK07238 bifunctional RNase H/ 92.4 0.18 3.9E-06 58.0 5.3 45 525-587 197-241 (372)
114 PRK10848 phosphohistidine phos 92.3 0.24 5.3E-06 51.1 5.7 46 525-587 22-67 (159)
115 PRK14119 gpmA phosphoglyceromu 92.3 0.22 4.8E-06 53.8 5.6 46 525-587 27-72 (228)
116 KOG1382|consensus 92.0 1.4 3E-05 53.2 12.1 62 528-602 135-196 (467)
117 PRK14117 gpmA phosphoglyceromu 91.7 0.25 5.4E-06 53.6 5.2 44 525-585 27-70 (230)
118 PRK14120 gpmA phosphoglyceromu 91.7 0.27 5.8E-06 54.4 5.5 45 525-586 30-74 (249)
119 PTZ00322 6-phosphofructo-2-kin 90.7 0.32 7E-06 60.5 5.5 46 525-586 443-488 (664)
120 PF02222 ATP-grasp: ATP-grasp 89.3 0.54 1.2E-05 49.8 5.0 148 147-328 1-157 (172)
121 COG2062 SixA Phosphohistidine 88.6 0.72 1.6E-05 48.9 5.3 47 525-588 25-71 (163)
122 KOG0235|consensus 86.6 0.85 1.8E-05 50.3 4.6 47 525-588 31-77 (214)
123 PRK06193 hypothetical protein; 86.4 1.2 2.6E-05 48.7 5.6 43 525-584 73-115 (206)
124 COG0151 PurD Phosphoribosylami 83.0 3.3 7.2E-05 49.8 7.6 209 69-329 53-286 (428)
125 PF03133 TTL: Tubulin-tyrosine 80.5 1 2.2E-05 50.0 2.2 54 189-259 67-126 (292)
126 PRK10172 phosphoanhydride phos 68.6 3.7 7.9E-05 49.6 2.9 89 779-901 288-378 (436)
127 COG3919 Predicted ATP-grasp en 66.7 23 0.0005 41.6 8.4 157 140-334 115-294 (415)
128 PF14243 DUF4343: Domain of un 65.6 56 0.0012 33.5 10.2 84 233-333 31-117 (130)
129 PHA02117 glutathionylspermidin 65.4 18 0.0004 43.4 7.7 65 189-270 309-379 (397)
130 KOG3720|consensus 60.1 5.2 0.00011 47.7 2.1 162 726-935 209-373 (411)
131 KOG4609|consensus 53.9 11 0.00024 42.4 3.1 47 525-588 113-159 (284)
132 PRK10507 bifunctional glutathi 51.0 42 0.00091 42.6 7.8 66 189-270 529-600 (619)
133 cd02639 R3H_RRM R3H domain of 41.9 29 0.00063 31.8 3.3 34 277-310 11-44 (60)
134 KOG0238|consensus 41.2 25 0.00053 43.7 3.6 177 129-334 101-291 (670)
135 PF14403 CP_ATPgrasp_2: Circul 39.5 30 0.00065 42.3 4.0 69 188-277 339-429 (445)
136 cd07202 cPLA2_Grp-IVC Group IV 39.4 34 0.00073 41.7 4.3 69 99-198 306-380 (430)
137 COG4770 Acetyl/propionyl-CoA c 37.5 39 0.00084 42.6 4.5 176 126-330 102-291 (645)
138 COG1038 PycA Pyruvate carboxyl 36.7 64 0.0014 42.2 6.2 180 126-334 108-301 (1149)
139 KOG0369|consensus 35.5 84 0.0018 40.5 6.8 173 134-334 142-327 (1176)
140 TIGR01016 sucCoAbeta succinyl- 34.3 19 0.00041 42.3 1.2 21 141-161 6-26 (386)
141 PF08442 ATP-grasp_2: ATP-gras 25.5 22 0.00048 39.0 -0.2 42 142-196 6-48 (202)
142 KOG4754|consensus 24.0 86 0.0019 35.7 3.9 58 523-595 45-102 (248)
143 PRK10173 glucose-1-phosphatase 23.5 57 0.0012 39.4 2.7 72 780-887 279-350 (413)
144 PRK00696 sucC succinyl-CoA syn 23.5 43 0.00092 39.4 1.6 43 140-195 5-48 (388)
145 PF04577 DUF563: Protein of un 23.0 58 0.0013 33.8 2.3 47 66-113 120-166 (206)
146 cd07201 cPLA2_Grp-IVB-IVD-IVE- 22.0 77 0.0017 39.8 3.4 50 99-175 395-448 (541)
147 PRK14046 malate--CoA ligase su 21.5 58 0.0013 38.9 2.2 21 142-162 7-27 (392)
148 COG0754 Gsp Glutathionylspermi 21.2 1E+02 0.0022 37.1 4.0 72 190-280 299-376 (387)
No 1
>KOG1057|consensus
Probab=100.00 E-value=1.2e-294 Score=2491.38 Aligned_cols=821 Identities=66% Similarity=1.052 Sum_probs=780.5
Q ss_pred CCCCCcCCCCeEEEEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccc-cccccccccceeeccccCCCcHHHHHH
Q psy10158 40 DSDPCCEEGKQVIVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQ-KPVDEWPIVDCLISFHSKGFPLEKAIK 118 (1266)
Q Consensus 40 ~~~~~~~~~~~i~iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvIL-e~vE~WP~cD~LIsFfS~GfPL~KAi~ 118 (1266)
++.+.....++|+||||||++|++||||++||+||+.|++|++|||+|+||| |||||||.|||||||||+||||+||++
T Consensus 30 ~e~~~~p~~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAia 109 (1018)
T KOG1057|consen 30 EEEDDSPPERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVA 109 (1018)
T ss_pred cccccCCCccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHH
Confidence 4455666678999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEeccccc
Q psy10158 119 YANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAE 198 (1266)
Q Consensus 119 Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~Ge 198 (1266)
|++|||||+||||.||+++||||+||+||++.|||+|++.+++|+++++..++++|++|+|+|||++|.||||||||+||
T Consensus 110 Y~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~E 189 (1018)
T KOG1057|consen 110 YAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAE 189 (1018)
T ss_pred HHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCcee
Q psy10158 199 DHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVE 278 (1266)
Q Consensus 199 dHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VR 278 (1266)
|||||||||+|+|||+|+||||||||||+|+|++.+|++|||||||||+|||||||||||||+|||||+||||||||+|+
T Consensus 190 DHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~ 269 (1018)
T KOG1057|consen 190 DHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVE 269 (1018)
T ss_pred cccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeCCCeEEEeecCceecccCchhhHHHHHHHHHHHH--Hhh
Q psy10158 279 RDSEGKEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNGFSFVKNSNKYYDDSAKILGNMIL--REL 356 (1266)
Q Consensus 279 RN~hgKEiRypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~ggsyVcDVNGwSFVK~n~kYYDdcA~ILr~~~l--~~l 356 (1266)
||+||||+||||+||++||+||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++|++ +++
T Consensus 270 Rns~GKEvRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~ 349 (1018)
T KOG1057|consen 270 RNSDGKEVRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARAL 349 (1018)
T ss_pred ecCCCceeeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997776 556
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCcCcceeeeceEEEEEcCCCCcccceeEEeechhHHHHHHhhCCCCCCcccccChH
Q psy10158 357 APTLHIPWSVPFQLDD--PPFVPTTFGKMMELRCVVAVIRHGDRTPKQKMKVEVRHPKFFEIFYKYGGQNDGHVKLKKPK 434 (1266)
Q Consensus 357 ~p~~~ip~~~p~~~~~--~p~~p~t~~~~~eLr~VVaViRHgDRTPKQKlK~~v~~~~Fi~Ll~~~~g~k~~evkLK~~~ 434 (1266)
+|..++||++|...++ +|++++++|+++|||||||||||||||||||||++|++++||+||++|+|++++|+|||++.
T Consensus 350 ~~~~~iP~~~p~~~~~~~~~~v~~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~~~e~klk~~~ 429 (1018)
T KOG1057|consen 350 APASQIPWSLPGIRNEKVEPWVPTSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYKKEETKLKSAN 429 (1018)
T ss_pred CccccCCCCCcccccCCCCCceecCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCccccceeeCCHH
Confidence 7888999999998887 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCChhhHHhHHHHHHHHHHHHhcCCCCCCcceEEeeecCCCCCCCCCCCccccccCCCCCC
Q psy10158 435 QLQEVLDIARMLLTEIENNSADPEIEEKQGKLEQLKGVLEMYGHFSGINRKVQMKYQPKGRPRGSSSDEEEEDVCKPKEP 514 (1266)
Q Consensus 435 qLqevLd~~r~ll~~~~~~~~~~e~eE~~~KL~qLk~VLe~~g~fsGINrKVQLKp~~~~~p~~~~~~~~~~~v~~~~e~ 514 (1266)
|||+|||++|.|+.+.+.. +..++|| ..||+|||+|||||||||||||||||||++|+.++.+ +++ . ..++
T Consensus 430 QLq~vLd~ar~ll~e~~~~-~~~die~-~~KleQlk~vLE~~ghFsGinrKVQlk~l~~~~~k~s--e~e---~--~r~~ 500 (1018)
T KOG1057|consen 430 QLQEVLDAARLLLEEKEDK-DAEDIEE-AKKLEQLKNVLEMYGHFSGINRKVQLKPLKWVYVKKS--EGE---L--EREP 500 (1018)
T ss_pred HHHHHHHHHHhhhcccccC-cccchhh-HHHHHHHHHHHHhhCCCCCccceeeeeeccccCCCCC--ccc---c--ccCc
Confidence 9999999999999887654 3445554 7899999999999999999999999999999988765 221 1 2246
Q ss_pred eEEEEEecCCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccCCc
Q psy10158 515 SLVLILKWGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGEL 594 (1266)
Q Consensus 515 kllLIlKWGGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEgeL 594 (1266)
+++||||||||||||||+|||||||+|||||||| ||+|||||||||||||||||||||||||||||||||||+|||+|
T Consensus 501 ~llliLKwGGelT~agr~QAeeLGr~FR~~~~gg--~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgel 578 (1018)
T KOG1057|consen 501 QLLLILKWGGELTHAGRYQAEELGRQFRCDYPGG--QGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGEL 578 (1018)
T ss_pred ceeEEeeeCCEecchhHhhHHHHHHHHHhcCCCC--CCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCC
Confidence 7999999999999999999999999999999998 59999999999999999999999999999999999999999999
Q ss_pred CceeeeeecccccCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCChhc-ccccCCCCcccHHHHHhhcCCHHHHHHHHHH
Q psy10158 595 TPILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHDLLQRDRTFTPED-RDKVNPCNATSINIAMDFVKNPVQCCKRIHE 673 (1266)
Q Consensus 595 tPIlVslVk~~~~~~LLDds~~a~~~md~vKk~L~~lL~~~~~~~~e~-~~~l~p~~~~s~~~al~~i~nP~~~~~~v~~ 673 (1266)
||||||||+++|+ |||++++|+++|++||++||+|||.|++|++++ +..++|.+..++.++|.+|+||+++|++++.
T Consensus 579 TpiLvqmVkkdn~--LLD~~~~as~~m~~vK~~L~~ilq~~~~~~~e~~~~~~~P~~~~~l~~~ve~vk~~~k~~~e~~~ 656 (1018)
T KOG1057|consen 579 TPILVQMVKKDNT--LLDDDNAASSYMDKVKARLHEILQAGREFTPEFDWPELMPNPSEVLTQVVELVKNPVKVCDENFA 656 (1018)
T ss_pred cHHHHHHHHhcch--hhcCcchhHHHHHHHHHHHHHHHhcCCcCCCccchhhcCCcHhHHHHHHHHHHHhHHHHHHHhhh
Confidence 9999999998766 999999999999999999999999999999995 8888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccccCcC-CCCCCHHHHHHHHHHHHHHhhcccCcccCCCCCcchhhhhhhhhcCccccCcccHH
Q psy10158 674 LIHVLQHIIQKKLEDVKCKESSL-YHGESWELMGRRWSKIEKDFCMKNYKYDISKIPDIYDCIKYDLQHNQHTVQFDQAE 752 (1266)
Q Consensus 674 l~~~l~~~~~~~~~d~~~~~~~~-c~gE~~~L~~eRW~KL~~dF~~~~k~fD~SKIpDiYD~iKYD~lHNr~fL~~~~l~ 752 (1266)
++..+.. -+++..|++| ||+|+|+||++||+|||+|||+++++||||||||||||||||+|||+| |.++.+.
T Consensus 657 ~~~~~~~------i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k~~r~DiSKIpdiYD~~KYD~~HN~~-l~~~~~~ 729 (1018)
T KOG1057|consen 657 LIEPLDH------IDVERIQPRWPCHSETPDLMRERWEKLERDFYNKRERFDISKIPDIYDTIKYDLLHNRQ-LLLNGFD 729 (1018)
T ss_pred ccccccc------eeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhhccccCccccchHHhhhhHHhhcchh-hhhcccc
Confidence 8877654 3456678999 999999999999999999999998899999999999999999999998 7778999
Q ss_pred HHHHHHHhhhcccccccccCCccchhhhHHhhhHHHHHHHHHHHHhhhhh-hhhhhccCCCCCCCCCCCCCccceeEEEe
Q psy10158 753 ELYLNAKYMADIVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEE-SEENVNRLNPQYSHGVSSPGRHVRTRLYF 831 (1266)
Q Consensus 753 ELY~laK~LaD~V~PQEYGIt~~EKL~IG~~is~pLLkKI~~DL~~~~ee-~~es~~RL~p~ys~gV~SP~RhVRTRlYF 831 (1266)
|||.+||.|||+|+||||||+++|||+||..+|.|||+||+.||++++|. .+++.||+||.| .||.|||||||||
T Consensus 730 ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e~~~~et~~~~~p~~----~sp~~~~r~~lY~ 805 (1018)
T KOG1057|consen 730 ELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLELESAETKNRLNPVY----LSPRRHVRTRLYF 805 (1018)
T ss_pred HHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchhhcchhhhcccCccc----cChhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998884 378999999999 6999999999999
Q ss_pred ccchhHHHHHHHHHhCCCCccccCChHHHHHHHhhhcCCCCccccccceeeeeeCCCCCCCCCCceEEEEEEc
Q psy10158 832 TSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSELNYMSQVVIMLYEDPTKDPTSDERFHIELHFS 904 (1266)
Q Consensus 832 TSESHIHTLLNvLr~ggl~~~~~~~d~~~~ram~~l~~ipELdYLSqIvf~LYE~~~~d~~~~~rf~Iei~~S 904 (1266)
|+|||+|||+ ++||| + +.+.||||++|+++||||+...|+.++++|++||+|+
T Consensus 806 ~sk~~v~sl~-~~ryG-~------------------~~~~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFt 858 (1018)
T KOG1057|consen 806 TSKSHVHSLL-LRRYG-I------------------SDVEKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFT 858 (1018)
T ss_pred hhHhhhhhhh-hhhcC-C------------------chhhhhcccchhceeechhhccCCcccccceeEEEec
Confidence 9999999999 99998 2 2478999999999999999999999999999999999
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7.1e-27 Score=258.90 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=193.8
Q ss_pred EEEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccc-cccccccccceeeccccCCCcH-HHHHHHHhhcCCcccc
Q psy10158 52 IVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQ-KPVDEWPIVDCLISFHSKGFPL-EKAIKYANLRKPFVIN 129 (1266)
Q Consensus 52 ~iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvIL-e~vE~WP~cD~LIsFfS~GfPL-~KAi~Y~klrkp~~lN 129 (1266)
.|.++.+.. ++-++..+..+.....-.+++-+..+.+. ++...-..+|++|.+-...+.. ..+++.++..+.++||
T Consensus 32 ~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN 109 (318)
T COG0189 32 ELAILDDGD--LSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVIN 109 (318)
T ss_pred eEEEEcccc--cccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEEC
Confidence 344444444 44444445444444444457788888888 7778888999999999999888 7788899999999999
Q ss_pred CccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccC
Q psy10158 130 NLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTS 209 (1266)
Q Consensus 130 dl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s 209 (1266)
+..+....+||..+++.|+++|||+|.|+++..... .-..+ -+.+..|+|+||++|+
T Consensus 110 ~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~---------~~~~~---~~~~g~pvVlKp~~Gs----------- 166 (318)
T COG0189 110 DPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDE---------AAEFV---AEHLGFPVVLKPLDGS----------- 166 (318)
T ss_pred CHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHH---------HHHHH---HHhcCCCEEEeeCCCC-----------
Confidence 999999999999999999999999999999975210 11111 1223489999999998
Q ss_pred CCCchhhhhcccCCccccccCC-cccccC--cceEEeeccCC-CCceEEEEEECCceeE--EeeccCCCCCCceeecCCC
Q psy10158 210 AGGGSQRLFRKIGSRSSVYSPE-SRVRKS--GSFIYEDFMPT-DGTDVKVYTVGPDYAH--AEARKSPALDGKVERDSEG 283 (1266)
Q Consensus 210 ~GgGv~~LfrKignkSS~y~p~-s~vr~~--gSyIYEEFI~t-~GtDVKVYtVGp~~vh--Ae~RKSPvvDG~VRRN~hg 283 (1266)
.|.|+- +.+ +...++..- ...... ..+|.||||++ .+-|++|+++|+.+++ |++|... .|.||.|.|+
T Consensus 167 ~G~gV~-~v~---~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~ 240 (318)
T COG0189 167 GGRGVF-LVE---DADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLAR 240 (318)
T ss_pred CccceE-Eec---CCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccc
Confidence 466763 444 333111100 122223 46999999998 4478888888888888 8999884 8999999999
Q ss_pred CceeeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeCCCeEEEeecC
Q psy10158 284 KEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 284 KEiRypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~ggsyVcDVNG 330 (1266)
|+...+++||++++++|.|||+++|+.+|||||+++++|.||||||.
T Consensus 241 Gg~~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~ 287 (318)
T COG0189 241 GGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287 (318)
T ss_pred cccccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeC
Confidence 99999999999999999999999999999999999999999999997
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.92 E-value=8.6e-26 Score=231.13 Aligned_cols=173 Identities=25% Similarity=0.392 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhh
Q psy10158 137 IQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQR 216 (1266)
Q Consensus 137 lrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~ 216 (1266)
+.||..++++|+++|||+|+|.++.... +...++.--+ .+|+|+||+.|. .|.|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~---------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~- 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPE---------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF- 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHH---------HHHHHHHHH-----SSEEEE-SB------------------E-
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHH---------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-
Confidence 3689999999999999999999996421 1222221111 399999999997 477874
Q ss_pred hhcccCCccccccCCcccccCcceEEeeccCC-CCceEEEEEECCceeEEeeccCCCCCCceeecCCCCceeeEeeCCHH
Q psy10158 217 LFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT-DGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNA 295 (1266)
Q Consensus 217 LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t-~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~e 295 (1266)
+++......+..+ ..-..+..+++|+||+. +|.|+||||||+++++|+.|.++ +|.||+|.+.|+...++.|+++
T Consensus 57 ~i~~~~~~~~~l~--~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~e 132 (190)
T PF08443_consen 57 LINSPDELESLLD--AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPEE 132 (190)
T ss_dssp EEESHCHHHHHHH-------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----HH
T ss_pred EecCHHHHHHHHH--HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCHH
Confidence 5554322111111 11125788899999997 45999999999999999999997 8899999999999999999999
Q ss_pred HHHHHHHHHHHhCCccceeeEEeeCCCeEEEeecCceecccC
Q psy10158 296 EKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNGFSFVKNS 337 (1266)
Q Consensus 296 EK~IA~kaakAFGq~VCGfDLLRs~ggsyVcDVNGwSFVK~n 337 (1266)
.+++|.++++++|+++|||||++.++++||||||.+.--++.
T Consensus 133 ~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 133 IKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 999999999999999999999999999999999998765543
No 4
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.92 E-value=7.9e-24 Score=225.20 Aligned_cols=334 Identities=25% Similarity=0.329 Sum_probs=205.9
Q ss_pred eeeceEEEEEcCCCCcccceeEEeechhHHHHHHhhCCCCCCcccccChHHHHHHHHHHHHHHHHhhhCCCChhhHHhHH
Q psy10158 385 ELRCVVAVIRHGDRTPKQKMKVEVRHPKFFEIFYKYGGQNDGHVKLKKPKQLQEVLDIARMLLTEIENNSADPEIEEKQG 464 (1266)
Q Consensus 385 eLr~VVaViRHgDRTPKQKlK~~v~~~~Fi~Ll~~~~g~k~~evkLK~~~qLqevLd~~r~ll~~~~~~~~~~e~eE~~~ 464 (1266)
||+.|+.|+|||||||-.+++..+..+.+.++..
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELES---------------------------------------------- 34 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhh----------------------------------------------
Confidence 6999999999999999888764444333332221
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEeeecCCCCCCCCCCCccccccCCCCCCeEEEEEecCCccChhHHHHHHHHHHHHHhc
Q psy10158 465 KLEQLKGVLEMYGHFSGINRKVQMKYQPKGRPRGSSSDEEEEDVCKPKEPSLVLILKWGGELTPAGRIQAEELGRVFRCM 544 (1266)
Q Consensus 465 KL~qLk~VLe~~g~fsGINrKVQLKp~~~~~p~~~~~~~~~~~v~~~~e~kllLIlKWGGElThaGR~QAeeLG~~fR~m 544 (1266)
.+..++.+++|+|.+.+ .. .....+||+ ||+.|..|..+||+.||..
T Consensus 35 ----~~~~~~~~~~~~~~~~~--~~--------------------------~~~~~~~g~-LT~~G~~q~~~lG~~lr~~ 81 (347)
T PF00328_consen 35 ----SAMSPETPGPFPGNYIQ--NE--------------------------FNWPCKWGQ-LTPRGMEQHYQLGKRLRER 81 (347)
T ss_dssp ----HHHHHTGGSGGGGTT----TC--------------------------CGSSSCTTS-BTHHHHHHHHHHHHHHHHH
T ss_pred ----hhcccCCCCCccccccc--cc--------------------------cccCCCCCc-ccchhhhHHHHHHHHHHHH
Confidence 56667788899986544 11 012357899 9999999999999999998
Q ss_pred cCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccC-----------CcCceeeeeecc--cccCCCC
Q psy10158 545 YPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEG-----------ELTPILVQMVKS--ANTNGLL 611 (1266)
Q Consensus 545 YPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEg-----------eLtPIlVslVk~--~~~~~LL 611 (1266)
|+ +|+.-+.+. .+++||||+..||++||+||+.||+...+ .-.|+-+..+.. ....++|
T Consensus 82 Y~-------~l~~~~~~~-~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (347)
T PF00328_consen 82 YP-------GLFPDNYNP-EQVYVRSTNKQRTIQSAQAFLQGLYPPSGEPFPDITQPPNSWQPIPVHTIPEIKKNDDDIL 153 (347)
T ss_dssp HH-------TSSTSSS-T-TTEEEEEESSHHHHHHHHHHHHHHSHTTSS-ECTTTSCTSCTCTEEEEEEECCHCGTTSSS
T ss_pred HH-------Hhccccccc-cceeEEEeccchHHHHHHHHHHHHhCCCccccccccccccCCCCcceeeccccccccchhc
Confidence 98 455444445 79999999999999999999999997665 233444444322 1112222
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCCChhcccccCCCCcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhhccCccc
Q psy10158 612 DNDSDASKHQNIVKAKLHDLLQRDRTFTPEDRDKVNPCNATSINIAMDFVKNPVQCCKRIHELIHVLQHIIQKKLEDVKC 691 (1266)
Q Consensus 612 Dds~~a~~~md~vKk~L~~lL~~~~~~~~e~~~~l~p~~~~s~~~al~~i~nP~~~~~~v~~l~~~l~~~~~~~~~d~~~ 691 (1266)
-.... .|++.-... ..+-......+......+...+.....
T Consensus 154 ~~~~~------~C~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 194 (347)
T PF00328_consen 154 LPNYD------NCPAYNEID-----------------------------SENEKEQSEEIDKWNQDFQESLAKRLQ---- 194 (347)
T ss_dssp STSHT------THHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccc------hhHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHhhhhhhhhc----
Confidence 11110 111100000 000000001111111111111110000
Q ss_pred ccCcCCCCCCHHHHHHHHHHHHHHhhcccCcccCCCCCcchhhhhhhhhcCccccCcccHHHHHHHHHhhhccccccccc
Q psy10158 692 KESSLYHGESWELMGRRWSKIEKDFCMKNYKYDISKIPDIYDCIKYDLQHNQHTVQFDQAEELYLNAKYMADIVIPQEYG 771 (1266)
Q Consensus 692 ~~~~~c~gE~~~L~~eRW~KL~~dF~~~~k~fD~SKIpDiYD~iKYD~lHNr~fL~~~~l~ELY~laK~LaD~V~PQEYG 771 (1266)
..|+|+....+...|..++..++... ..+.+++|++|+.+++|++++.. +..++++|.. ||
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------~~ 255 (347)
T PF00328_consen 195 ---KVIPGEDNLTFFDVWAIFDDCLYEQI-YNDGSPFPEWFTDMKEDALQLEY---LEDLKEYYQY------------YG 255 (347)
T ss_dssp ---HHSTTCEECTHHHHHHHHHHHHHHHH-HHTT-GGGGGSCHTSHHHHHHHH---HHHHHHHHHH------------CS
T ss_pred ---cccCccccccchhhhhhhhhhhhhhc-cCCCCCCchhhcccchHHHHHHh---hhhHHHHhhc------------cc
Confidence 01677777788999999999998755 47899999999999999999875 3345566665 88
Q ss_pred CCccchhhhHHhhhHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCccceeEEEeccchhHHHHHHHHHhCCCCc
Q psy10158 772 MTMSEKLTISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYGGLTE 851 (1266)
Q Consensus 772 It~~EKL~IG~~is~pLLkKI~~DL~~~~ee~~es~~RL~p~ys~gV~SP~RhVRTRlYFTSESHIHTLLNvLr~ggl~~ 851 (1266)
.+++. +.+.+.|||+.|+..++...+. .++.+..|-.|||+..+.|..||.+| |+..
T Consensus 256 ~~~~~----~~~~~~~ll~~ll~~l~~~~~~----------------~~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~ 312 (347)
T PF00328_consen 256 YSDEI----ARLQGGPLLNELLRRLKQAING----------------NSPGRPPKLVLYSGHDTTLMPLLSAL---GLDN 312 (347)
T ss_dssp TTHHH----HHHHHHHHHHHHHHHHHHCHSS----------------TCSCSSCSEEEEEE-HHHHHHHHHHT---TCTT
T ss_pred CCchH----HHHHHhHHHHHHHHHHhhcccc----------------ccccccceEEEEecCHHHHHHHHHHh---CCCc
Confidence 88874 4555667777777777632221 11334568999999999999999998 4544
Q ss_pred cccCChHHHHHHHhhhcCCCCccccccceeeeeeCCCCCCCCCCceEEEEEEc
Q psy10158 852 SVHMNDEQWMRAMEYVSMVSELNYMSQVVIMLYEDPTKDPTSDERFHIELHFS 904 (1266)
Q Consensus 852 ~~~~~d~~~~ram~~l~~ipELdYLSqIvf~LYE~~~~d~~~~~rf~Iei~~S 904 (1266)
. .... ...--.|-|+|+||||++ +.+.|.||+.+.
T Consensus 313 ~--~~~~----------~~~~pp~as~l~fEl~~~------~~~~~~Vr~~yN 347 (347)
T PF00328_consen 313 Y--SPPY----------QSYWPPYASNLVFELYRD------SGKNYYVRVLYN 347 (347)
T ss_dssp T--STTT----------HSSCSSTT-EEEEEEEEE------TTTEEEEEEEET
T ss_pred c--Cccc----------cCCCCCccceeEEEEEEe------CCCcEEEEEEEC
Confidence 1 1100 022346889999999998 222399999874
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=220.46 Aligned_cols=247 Identities=18% Similarity=0.262 Sum_probs=180.7
Q ss_pred EEEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccc-c---c-------cccccccceeeccccCCCc--HHHHHH
Q psy10158 52 IVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQ-K---P-------VDEWPIVDCLISFHSKGFP--LEKAIK 118 (1266)
Q Consensus 52 ~iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvIL-e---~-------vE~WP~cD~LIsFfS~GfP--L~KAi~ 118 (1266)
+|||-+.+....| -+.|++-|.+.| ++++++.-+.+. . . ......+|++|++....+. -....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4666666655444 345555566655 455555433321 1 0 1234578999997644322 244467
Q ss_pred HHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE-EEcCeEecCCEEEecccc
Q psy10158 119 YANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV-EVNGIVFNKPFVEKPVSA 197 (1266)
Q Consensus 119 Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv~G 197 (1266)
.++..+|+++|+..+..+.+||..++++|+++|||+|++.++.... +..+.+ ..+| .|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~---------~~~~~~~~~~~----~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPD---------DTSDLIDMVGG----APLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHH---------HHHHHHHHhCC----CCEEEEECCC
Confidence 8888899999999999999999999999999999999999874210 011111 1223 7999999999
Q ss_pred cCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC-CCceEEEEEECCceeEEeeccCCCCCCc
Q psy10158 198 EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT-DGTDVKVYTVGPDYAHAEARKSPALDGK 276 (1266)
Q Consensus 198 edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t-~GtDVKVYtVGp~~vhAe~RKSPvvDG~ 276 (1266)
. .|.|+. +++........+. .....+..+|+||||+. .|.|+||+++|+++++|+.|.++ .|.
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~--~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~~~ 209 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID--AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--EGD 209 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH--HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--CCc
Confidence 7 477774 4432111000000 01123567999999985 79999999999999999999885 578
Q ss_pred eeecCCCCceeeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeCCCeEEEeecC
Q psy10158 277 VERDSEGKEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 277 VRRN~hgKEiRypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~ggsyVcDVNG 330 (1266)
|+.|.+.|+..+++.|+++.+++|.++++++|+.++|||++...+++||+|||.
T Consensus 210 ~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~ 263 (300)
T PRK10446 210 FRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNA 263 (300)
T ss_pred hhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEEC
Confidence 999999999999999999999999999999999999999999877799999996
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.87 E-value=9.3e-22 Score=206.43 Aligned_cols=244 Identities=21% Similarity=0.229 Sum_probs=178.7
Q ss_pred EEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccc---cc-cccccccceeeccccCCCcHHHHHHHHhhcCCccc
Q psy10158 53 VGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQ---KP-VDEWPIVDCLISFHSKGFPLEKAIKYANLRKPFVI 128 (1266)
Q Consensus 53 iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvIL---e~-vE~WP~cD~LIsFfS~GfPL~KAi~Y~klrkp~~l 128 (1266)
|||++=.... =++.+.+.|.+.| +++.+|....+. .. -..|+.+|+++.+...+..-..+.++++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6776654322 4556666666665 456666544332 11 22389999999987544444567788888888889
Q ss_pred cCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEecc
Q psy10158 129 NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPT 208 (1266)
Q Consensus 129 Ndl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~ 208 (1266)
|+.....+.+||+..+++|+++|||+|++..+.... +....+. .+..|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~---------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE---------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHH---------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 999999999999999999999999999999885311 1111121 12379999999996
Q ss_pred CCCCchhhhhcccCCccccccCCcccc----cCcceEEeeccCCC-CceEEEEEECCceeEEeeccCCCCCCceeecCCC
Q psy10158 209 SAGGGSQRLFRKIGSRSSVYSPESRVR----KSGSFIYEDFMPTD-GTDVKVYTVGPDYAHAEARKSPALDGKVERDSEG 283 (1266)
Q Consensus 209 s~GgGv~~LfrKignkSS~y~p~s~vr----~~gSyIYEEFI~t~-GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hg 283 (1266)
.|.|+. +++. .......-..++ ....||+||||+.. |.|+||+++|+++++++.|.. .+.++.|.+.
T Consensus 135 -~g~gv~-~i~~---~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~ 206 (277)
T TIGR00768 135 -WGRLVS-LARD---KQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLAR 206 (277)
T ss_pred -CCCceE-EEcC---HHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhc
Confidence 355653 3332 111110000111 12579999999964 589999999999999998873 5679999998
Q ss_pred CceeeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeC-CCeEEEeecCc
Q psy10158 284 KEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRAN-GKSFVCDVNGF 331 (1266)
Q Consensus 284 KEiRypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~-ggsyVcDVNGw 331 (1266)
++...++.|+++.+++|.++++++|..+||||++... |++||+|||..
T Consensus 207 g~~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~ 255 (277)
T TIGR00768 207 GGKAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPN 255 (277)
T ss_pred CCeeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCC
Confidence 8888899999999999999999999999999999984 58999999985
No 7
>KOG1057|consensus
Probab=99.86 E-value=2.2e-23 Score=244.52 Aligned_cols=137 Identities=33% Similarity=0.491 Sum_probs=119.2
Q ss_pred cccHHHHHHHHHhhhcccccccccCCccchhhhHHhhhHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCcccee
Q psy10158 748 FDQAEELYLNAKYMADIVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPGRHVRT 827 (1266)
Q Consensus 748 ~~~l~ELY~laK~LaD~V~PQEYGIt~~EKL~IG~~is~pLLkKI~~DL~~~~ee~~es~~RL~p~ys~gV~SP~RhVRT 827 (1266)
+..+.+||..+|.++|+++|++|||++.+||.||..|+.+|..+|.+|. ++.||++|
T Consensus 797 ~~~r~~lY~~sk~~v~sl~~~ryG~~~~~~ln~~~~t~~~L~~~~~~d~-----------------------~~e~~~~~ 853 (1018)
T KOG1057|consen 797 RHVRTRLYFTSKSHVHSLLLRRYGISDVEKLNDGLLTSIRLYEQILNDP-----------------------TSERHFHT 853 (1018)
T ss_pred HHHHHHHhhhhHhhhhhhhhhhcCCchhhhhcccchhceeechhhccCC-----------------------ccccccee
Confidence 4568999999999999999999999999999999999999999999998 35579999
Q ss_pred EEEeccchhHHHHHHHHHhCCCCccc-cCChHHHHHHHhhhcCCCCccccccceeeeeeCCCCCCCCCCceEEEEEEcCC
Q psy10158 828 RLYFTSESHIHSLLTVLRYGGLTESV-HMNDEQWMRAMEYVSMVSELNYMSQVVIMLYEDPTKDPTSDERFHIELHFSPG 906 (1266)
Q Consensus 828 RlYFTSESHIHTLLNvLr~ggl~~~~-~~~d~~~~ram~~l~~ipELdYLSqIvf~LYE~~~~d~~~~~rf~Iei~~SpG 906 (1266)
|+|||+|||||+|+||++++.+.++- .....+.++|+++++.++|||||+||||||||++. ++.++||+|||++|||
T Consensus 854 rlyFtreshi~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~~i~fel~e~t~--~S~~Kr~~~~lt~s~g 931 (1018)
T KOG1057|consen 854 RLYFTRESHIYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLSQIVFELFENTE--ASGPKRFSIRLTSSRG 931 (1018)
T ss_pred EEEeccchhhhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHHHHHHHHhcccc--cccCcccceEEeecCC
Confidence 99999999999999999987665531 11223567788888889999999999999999974 4668999999999999
Q ss_pred Ccc
Q psy10158 907 VNC 909 (1266)
Q Consensus 907 a~~ 909 (1266)
|+.
T Consensus 932 ~~~ 934 (1018)
T KOG1057|consen 932 CDL 934 (1018)
T ss_pred ccc
Confidence 553
No 8
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.86 E-value=4.4e-21 Score=214.02 Aligned_cols=273 Identities=16% Similarity=0.204 Sum_probs=193.2
Q ss_pred CCcCCCCeEEEEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccccccccccccceeeccccCCCcHHHHHHHHhh
Q psy10158 43 PCCEEGKQVIVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQKPVDEWPIVDCLISFHSKGFPLEKAIKYANL 122 (1266)
Q Consensus 43 ~~~~~~~~i~iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvILe~vE~WP~cD~LIsFfS~GfPL~KAi~Y~kl 122 (1266)
......+..+||-|--.||.+|==-..|++.+.+.| ++++.-..+. |++.=-.+|++|-....-.=-....+|...
T Consensus 14 ~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~---pl~~qgpfDvilhK~~~~~~~~~~~~~~~e 89 (328)
T PLN02941 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR---PLSEQGPFDVILHKLYGKEWRQQLEEYREK 89 (328)
T ss_pred cccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC---CccccCCcCEEEEecCCHHHHHHHHHHHHH
Confidence 444556789999888888888866667888777766 4444433332 333222479999887543223566677665
Q ss_pred c-CCccccCccchhhhhHHHHHHHHHHhcC-------CCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEec
Q psy10158 123 R-KPFVINNLNMQYDIQDRRKVYALLEKEG-------IEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKP 194 (1266)
Q Consensus 123 r-kp~~lNdl~~Q~ilrDRr~vlqiL~~~g-------Ip~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKp 194 (1266)
. +..+||.+.++..+.||...+++|++.| ||+|+++++..... .+. ..... ..++.|+|.||
T Consensus 90 ~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~-----al~---~~~~~--~~l~~P~V~KP 159 (328)
T PLN02941 90 HPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDES-----SIP---DAVAL--AGLKFPLVAKP 159 (328)
T ss_pred CCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHH-----HHH---HHHHH--hcCCCCEEEee
Confidence 5 6789999999999999999999999999 99999999965311 000 00111 12568999999
Q ss_pred ccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCC
Q psy10158 195 VSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALD 274 (1266)
Q Consensus 195 v~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvD 274 (1266)
+.|.. ++.|-|+.++|.. +..-..+..|+.||||.-+|.|+||||||+.+ +|+.|+| .
T Consensus 160 l~g~G--------ss~gh~m~lv~~~----------~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v-~~~~R~S---~ 217 (328)
T PLN02941 160 LVADG--------SAKSHKMSLAYDQ----------EGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYV-KCVRRFS---L 217 (328)
T ss_pred cccCC--------CccccceEEecCH----------HHHHhcCCcEEEEEecCCCCEEEEEEEECCEE-EEEEecC---C
Confidence 99931 2246665433332 21112355799999999999999999999994 9999998 4
Q ss_pred Ccee---ecCCCC----------------ce-------eeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeC---CCeEE
Q psy10158 275 GKVE---RDSEGK----------------EI-------RYPVILSNAEKLISRKVCLAFKQTVCGFDLLRAN---GKSFV 325 (1266)
Q Consensus 275 G~VR---RN~hgK----------------Ei-------RypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~---ggsyV 325 (1266)
+.++ .|++.| +. ..+...+++-+++|.++++++|+.++||||++.. ++-+|
T Consensus 218 ~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~V 297 (328)
T PLN02941 218 PDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYV 297 (328)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEE
Confidence 4566 777766 32 3444556678999999999999999999999985 47889
Q ss_pred EeecCceecccCchhhHHHHHHHHHH
Q psy10158 326 CDVNGFSFVKNSNKYYDDSAKILGNM 351 (1266)
Q Consensus 326 cDVNGwSFVK~n~kYYDdcA~ILr~~ 351 (1266)
+|||++==-|+-..|+..-.+.|.++
T Consensus 298 idVN~fP~~k~~p~~~~~l~~~~~~~ 323 (328)
T PLN02941 298 IDINYFPGYAKMPGYETVLTDFLLSL 323 (328)
T ss_pred EEecCCCccccCCchHHHHHHHHHHH
Confidence 99999943455666766544444433
No 9
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.86 E-value=2.9e-21 Score=204.97 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=171.9
Q ss_pred hHHHHHHHHhhcCcEEEEEecccccc---cccccccccceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHH
Q psy10158 66 PMKEILTRLEEFEFIKMIVFSEETIQ---KPVDEWPIVDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRK 142 (1266)
Q Consensus 66 PMr~IL~RL~~~g~f~viiF~dkvIL---e~vE~WP~cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~ 142 (1266)
-++.|.+-|.+.|.-=..+.-++... ++...|..||++|.+-..+...-.....++..+..++|+.....+.+||..
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHHH
Confidence 35667777777764323334443322 455789999999988433333334455667778888999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccC
Q psy10158 143 VYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIG 222 (1266)
Q Consensus 143 vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKig 222 (1266)
.+++|+++|||+|.+..+.... +..+.+ ..+..|+|+||..|. .|.|+. ++.
T Consensus 91 ~~~~l~~~gip~P~t~~~~~~~---------~~~~~~----~~~~~P~vvKP~~g~-----------~g~gv~-~v~--- 142 (280)
T TIGR02144 91 TYLKLAKAGVPTPRTYLAFDRE---------AALKLA----EALGYPVVLKPVIGS-----------WGRLVA-LIR--- 142 (280)
T ss_pred HHHHHHHCCcCCCCeEeeCCHH---------HHHHHH----HHcCCCEEEEECcCC-----------CcCCEE-EEC---
Confidence 9999999999999999875311 011111 113479999999986 355653 332
Q ss_pred Ccccccc---CCccc--ccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHH
Q psy10158 223 SRSSVYS---PESRV--RKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEK 297 (1266)
Q Consensus 223 nkSS~y~---p~s~v--r~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK 297 (1266)
+...... ....+ ..+..+|+||||+..|.|++|+++|+.++|++.|.+ +.++.|.+.++...++.|+++.+
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~ 218 (280)
T TIGR02144 143 DKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVE 218 (280)
T ss_pred CHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHH
Confidence 1111100 00011 124579999999977899999999999999999976 56899988888888999999999
Q ss_pred HHHHHHHHHhCCccceeeEEee-CCCeEEEeecCc
Q psy10158 298 LISRKVCLAFKQTVCGFDLLRA-NGKSFVCDVNGF 331 (1266)
Q Consensus 298 ~IA~kaakAFGq~VCGfDLLRs-~ggsyVcDVNGw 331 (1266)
++|.++++++|..++|||++.. +|++||+|||.+
T Consensus 219 ~~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~ 253 (280)
T TIGR02144 219 ELAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHV 253 (280)
T ss_pred HHHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCC
Confidence 9999999999999999999997 568999999975
No 10
>PRK05246 glutathione synthetase; Provisional
Probab=99.84 E-value=2.8e-21 Score=212.33 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=152.5
Q ss_pred ccccccceeeccccCCCcH-----HHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCcc
Q psy10158 95 DEWPIVDCLISFHSKGFPL-----EKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVK 169 (1266)
Q Consensus 95 E~WP~cD~LIsFfS~GfPL-----~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~ 169 (1266)
-.||.+|+++.+-..-|.. ...+++++.++..++|+.......+||+..++++. ++|+|.+.....
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~----- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKA----- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHH-----
Confidence 3478899999886555553 45777888889999999999999999999999876 899998875311
Q ss_pred ccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccC-CccccccCCcccc--cCcceEEeecc
Q psy10158 170 HELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIG-SRSSVYSPESRVR--KSGSFIYEDFM 246 (1266)
Q Consensus 170 ~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKig-nkSS~y~p~s~vr--~~gSyIYEEFI 246 (1266)
+..+++.-. .|+|+||+.|. .|.|+- +.++-+ +..+.+. .+. ....||.|+||
T Consensus 146 ----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~-~i~~~~~~~~~~~~---~l~~~~~~~~lvQ~~I 201 (316)
T PRK05246 146 ----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIF-RVKADDPNLGSILE---TLTEHGREPVMAQRYL 201 (316)
T ss_pred ----HHHHHHHHC-----CCEEEEECCCC-----------CccceE-EEeCCCccHHHHHH---HHHHccCCeEEEEecc
Confidence 111222212 48999999998 577774 333211 0011111 122 24689999999
Q ss_pred CC-CCceEEEEEECCceeE-EeeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHH---HHhCCccceeeEEeeCC
Q psy10158 247 PT-DGTDVKVYTVGPDYAH-AEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVC---LAFKQTVCGFDLLRANG 321 (1266)
Q Consensus 247 ~t-~GtDVKVYtVGp~~vh-Ae~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaa---kAFGq~VCGfDLLRs~g 321 (1266)
+. ++.|+||+++|++++| |+.|.++ .|.||.|.|.|+...++.||++|++||.+++ +++|+.+|||||+
T Consensus 202 ~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---- 275 (316)
T PRK05246 202 PEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI---- 275 (316)
T ss_pred ccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe----
Confidence 86 5789999999999999 9999986 6899999999999999999999999999999 5779999999999
Q ss_pred CeEEEeecC
Q psy10158 322 KSFVCDVNG 330 (1266)
Q Consensus 322 gsyVcDVNG 330 (1266)
+.||+|||.
T Consensus 276 ~~~l~EvN~ 284 (316)
T PRK05246 276 GDYLTEINV 284 (316)
T ss_pred CCEEEEEeC
Confidence 358999993
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.83 E-value=9.8e-21 Score=208.34 Aligned_cols=197 Identities=16% Similarity=0.200 Sum_probs=151.6
Q ss_pred ccccccceeeccccCCCcH-----HHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCcc
Q psy10158 95 DEWPIVDCLISFHSKGFPL-----EKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVK 169 (1266)
Q Consensus 95 E~WP~cD~LIsFfS~GfPL-----~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~ 169 (1266)
-.|+.+|++|.+-...|.. ...+++++..+..++|+........||...++++. ++|.|++.+...
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~----- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKA----- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHH-----
Confidence 4588999999987655553 46788888888999999999999999999888763 899999875311
Q ss_pred ccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cccc--cCcceEEeecc
Q psy10158 170 HELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRVR--KSGSFIYEDFM 246 (1266)
Q Consensus 170 ~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~vr--~~gSyIYEEFI 246 (1266)
+..+++.-. .|+|+||+.|. .|.|+.+ ++. ....+... .... ....|++|+||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~-v~~---~~~~~~~~~~~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFR-LDP---GDPNFNSILETMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEE-EcC---CCccHHHHHHHHHhccCCcEEEEecc
Confidence 111222211 37999999997 4667743 221 11111100 0111 24589999999
Q ss_pred CC-CCceEEEEEECCcee-EEeeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHH---HHhCCccceeeEEeeCC
Q psy10158 247 PT-DGTDVKVYTVGPDYA-HAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVC---LAFKQTVCGFDLLRANG 321 (1266)
Q Consensus 247 ~t-~GtDVKVYtVGp~~v-hAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaa---kAFGq~VCGfDLLRs~g 321 (1266)
+. ++.|+||++||++++ ||+.|.++ +|+||.|.+.|+...+++||++|+++|.+++ +++|+.+||||||
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 96 678999999999975 69999885 7899999999999999999999999999998 7789999999999
Q ss_pred CeEEEeecC
Q psy10158 322 KSFVCDVNG 330 (1266)
Q Consensus 322 gsyVcDVNG 330 (1266)
++||+|||.
T Consensus 275 g~~v~EvN~ 283 (312)
T TIGR01380 275 GGYLTEVNV 283 (312)
T ss_pred CCEEEEEec
Confidence 479999995
No 12
>PRK12458 glutathione synthetase; Provisional
Probab=99.81 E-value=5.5e-20 Score=205.11 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=149.2
Q ss_pred ccccccceeeccccCCCcHH--HHH--------HHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCC
Q psy10158 95 DEWPIVDCLISFHSKGFPLE--KAI--------KYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRES 164 (1266)
Q Consensus 95 E~WP~cD~LIsFfS~GfPL~--KAi--------~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~ 164 (1266)
-.|..+|+|+.+---.|... ..+ ++++..+.+++|+........||+..+++++ +++|.|++.....
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~ 151 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKE 151 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHH
Confidence 35888999998875555432 222 2225668899999999999999999876554 7899999875311
Q ss_pred CCCccccccccCCeE-EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccC--CccccccCCcccccCcceE
Q psy10158 165 PDPVKHELVESEDHV-EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIG--SRSSVYSPESRVRKSGSFI 241 (1266)
Q Consensus 165 ~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKig--nkSS~y~p~s~vr~~gSyI 241 (1266)
+..+++ ..++ .|+|+||++|. .|.|+. ++..-. |..+.+. .+...+.+|
T Consensus 152 ---------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~-~v~~~~~~~~~~ile---~~~~~~~~i 203 (338)
T PRK12458 152 ---------YIREFLEESPG----DKMILKPLQGS-----------GGQGVF-LIEKSAQSNLNQILE---FYSGDGYVI 203 (338)
T ss_pred ---------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeE-EEecCChhhHHHHHH---HHhhCCCEE
Confidence 111222 2333 46999999997 466764 332111 0001111 122366899
Q ss_pred EeeccCC-CCceEEEEEECCcee------EEeeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHh---CCcc
Q psy10158 242 YEDFMPT-DGTDVKVYTVGPDYA------HAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAF---KQTV 311 (1266)
Q Consensus 242 YEEFI~t-~GtDVKVYtVGp~~v------hAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAF---Gq~V 311 (1266)
+||||+. ++-|+||++||++++ ||+.|.+. .|+||.|.+-|+...++.||++++++|.+++.++ |+.+
T Consensus 204 vQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~~ 281 (338)
T PRK12458 204 AQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLFF 281 (338)
T ss_pred EEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCeE
Confidence 9999995 668999999999999 99999884 6899999999999999999999999999999988 9999
Q ss_pred ceeeEEeeCCCeEEEeecCc
Q psy10158 312 CGFDLLRANGKSFVCDVNGF 331 (1266)
Q Consensus 312 CGfDLLRs~ggsyVcDVNGw 331 (1266)
|||||+ +.+|+|||..
T Consensus 282 ~gVDli----~~~l~EIN~~ 297 (338)
T PRK12458 282 VGLDIV----GDKLVEVNVF 297 (338)
T ss_pred EeEEEE----CCEEEEEeCC
Confidence 999999 4689999943
No 13
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.69 E-value=7.5e-17 Score=179.70 Aligned_cols=180 Identities=12% Similarity=0.120 Sum_probs=130.1
Q ss_pred ccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE-EEcCeEecCCEEEecccccCcceEEEe
Q psy10158 128 INNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV-EVNGIVFNKPFVEKPVSAEDHNIYIYY 206 (1266)
Q Consensus 128 lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv~GedHNI~IYy 206 (1266)
.|+=+--.++.||..+.++|.++|||+|+|..+...... .++.. .+.+ ..|+|+||++|+
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~--------~~~l~~~~~~---~~~VVVKPl~Gs-------- 86 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAE--------VKTIHNIVKD---HPDFVIKPAQGS-------- 86 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhh--------HHHHHHHHcc---CCCEEEEECCCC--------
Confidence 577778889999999999999999999998877532110 11111 2222 257999999999
Q ss_pred ccCCCCchhhhhcccCCcc------ccccCC---c-------cc-ccC--cceEEeeccCC-----------CCceEEEE
Q psy10158 207 PTSAGGGSQRLFRKIGSRS------SVYSPE---S-------RV-RKS--GSFIYEDFMPT-----------DGTDVKVY 256 (1266)
Q Consensus 207 p~s~GgGv~~LfrKignkS------S~y~p~---s-------~v-r~~--gSyIYEEFI~t-----------~GtDVKVY 256 (1266)
+|.|+. +.+...+.. ..+.++ . .+ ... ..+.|+||+.. .+.||||+
T Consensus 87 ---~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~ 162 (317)
T TIGR02291 87 ---GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRII 162 (317)
T ss_pred ---CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEE
Confidence 699984 554321110 000100 0 00 112 22344455422 23899999
Q ss_pred EECCceeEEeeccCCCCCCceeecCCCCceeeEeeCC--------------------------------HHHHHHHHHHH
Q psy10158 257 TVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILS--------------------------------NAEKLISRKVC 304 (1266)
Q Consensus 257 tVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT--------------------------------~eEK~IA~kaa 304 (1266)
|||++.++||.|.+. -.|.++.|.|.|++..+|.|. ++-.++|.+|+
T Consensus 163 vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~ 241 (317)
T TIGR02291 163 VFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCW 241 (317)
T ss_pred EECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHH
Confidence 999999999999762 257799999999999999986 67779999999
Q ss_pred HHhCCccceeeEEee-CCCeEEEeecCc
Q psy10158 305 LAFKQTVCGFDLLRA-NGKSFVCDVNGF 331 (1266)
Q Consensus 305 kAFGq~VCGfDLLRs-~ggsyVcDVNGw 331 (1266)
+++|+.++|+|++.. +++++|+|||+-
T Consensus 242 ~~~g~~~~GvDii~~~~~g~~VlEVN~~ 269 (317)
T TIGR02291 242 ELTGLGYMGVDMVLDKEEGPLVLELNAR 269 (317)
T ss_pred HhcCCCeEEEEEEEeCCCCEEEEEeCCC
Confidence 999999999999986 789999999964
No 14
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.68 E-value=4.7e-16 Score=163.08 Aligned_cols=62 Identities=53% Similarity=0.656 Sum_probs=53.7
Q ss_pred CccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccC
Q psy10158 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEG 592 (1266)
Q Consensus 524 GElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEg 592 (1266)
|+||+.|+.|+.+||+.||..|+.. +.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 17 ~~LT~~G~~q~~~~G~~lr~~y~~~-------~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 17 GELTPFGRQQAFELGRYFRQRYGEL-------LLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh-------cccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999988863 2224556689999999999999999999999998554
No 15
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.65 E-value=2e-16 Score=186.63 Aligned_cols=174 Identities=17% Similarity=0.295 Sum_probs=130.8
Q ss_pred cccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEe
Q psy10158 127 VINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYY 206 (1266)
Q Consensus 127 ~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYy 206 (1266)
.+|...+..+..||..+.++|+++|||+|.+.++.... +..+++.- +. |+|+||++|.
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~~---------~~~~~~~~----~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGE---------AVEAFLAE----HG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHH----hC-CEEEEECCCC--------
Confidence 44666777888999999999999999999999986311 11112211 22 6999999997
Q ss_pred ccCCCCchhhhhcccCCccccccCC-cccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCC--CCc-------
Q psy10158 207 PTSAGGGSQRLFRKIGSRSSVYSPE-SRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPAL--DGK------- 276 (1266)
Q Consensus 207 p~s~GgGv~~LfrKignkSS~y~p~-s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvv--DG~------- 276 (1266)
+|.|+. + .+.+....-..- ...+....+|.|+||+ |.|+||+|||+++++|+.|..|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~eL~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Li 414 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDDLEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLI 414 (547)
T ss_pred ---CCcCeE-E--ecCCHHHHHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHH
Confidence 588874 3 122222111100 0112355899999994 899999999999999999998843 552
Q ss_pred -----------------------------------------------eeecCCCCceeeEe--eCCHHHHHHHHHHHHHh
Q psy10158 277 -----------------------------------------------VERDSEGKEIRYPV--ILSNAEKLISRKVCLAF 307 (1266)
Q Consensus 277 -----------------------------------------------VRRN~hgKEiRypV--~LT~eEK~IA~kaakAF 307 (1266)
.+.|+|-|+....| .+.++.+++|.++|+++
T Consensus 415 e~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~ 494 (547)
T TIGR03103 415 EKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARAL 494 (547)
T ss_pred HHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHh
Confidence 15788888888888 79999999999999999
Q ss_pred CCccceeeEEeeC-CCe--EEEeecC
Q psy10158 308 KQTVCGFDLLRAN-GKS--FVCDVNG 330 (1266)
Q Consensus 308 Gq~VCGfDLLRs~-ggs--yVcDVNG 330 (1266)
|+.|||||||..+ .+| +|||||.
T Consensus 495 gl~~~GvD~i~~~~~~p~~~iiEvN~ 520 (547)
T TIGR03103 495 DIPVVGIDFLVPDVTGPDYVIIEANE 520 (547)
T ss_pred CCCeEEEEEEeccCCCCCeEEEEecC
Confidence 9999999999864 556 9999994
No 16
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.61 E-value=2e-14 Score=155.33 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=165.6
Q ss_pred eEEEEEEe------cCCccCChhHHHHHHHHhhcCcEEEEEec-ccccccccccccccceeeccccCCCcHH-HHHHHHh
Q psy10158 50 QVIVGVCA------MAKKSQSKPMKEILTRLEEFEFIKMIVFS-EETIQKPVDEWPIVDCLISFHSKGFPLE-KAIKYAN 121 (1266)
Q Consensus 50 ~i~iGVCA------Md~Ka~SkPMr~IL~RL~~~g~f~viiF~-dkvILe~vE~WP~cD~LIsFfS~GfPL~-KAi~Y~k 121 (1266)
+++|+||+ -+....|. +.|++=|.+.| +++++.. ++.+++-+ .|..+|+++..+...+..+ .+-++++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~~~-~~~~~D~v~~~~~g~~~~~~~~~~~le 79 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAAQL-KELGFDRVFNALHGRGGEDGTIQGLLE 79 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHHHh-ccCCCCEEEEecCCCCCCccHHHHHHH
Confidence 45788887 44444443 67777777755 4555553 33333322 2457899998876545442 3445566
Q ss_pred hcCCccc-cCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCc
Q psy10158 122 LRKPFVI-NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDH 200 (1266)
Q Consensus 122 lrkp~~l-Ndl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedH 200 (1266)
..+...+ ++.....+..||....++|+++|||+|++..+..... ....+. .+..|+|+||..|.
T Consensus 80 ~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~---------~~~~~~----~~~~P~ivKP~~g~-- 144 (304)
T PRK01372 80 LLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREED---------LLAAID----KLGLPLVVKPAREG-- 144 (304)
T ss_pred HcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcch---------HHHHHh----hcCCCEEEeeCCCC--
Confidence 6665555 5578888999999999999999999999999864211 111111 23489999999986
Q ss_pred ceEEEeccCCCCchhhhhcccCCccccccC-CcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCC--ce
Q psy10158 201 NIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDG--KV 277 (1266)
Q Consensus 201 NI~IYyp~s~GgGv~~LfrKignkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG--~V 277 (1266)
.|.|+. + +.|....... +.....+..+|.||||+ |.++.|.++|+.+.++..+..+ .| .+
T Consensus 145 ---------~s~Gv~-~---v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~~~ 207 (304)
T PRK01372 145 ---------SSVGVS-K---VKEEDELQAALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFYDY 207 (304)
T ss_pred ---------CCCCEE-E---eCCHHHHHHHHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEEee
Confidence 355553 2 2222211100 00112357799999997 8999999999999888877663 33 35
Q ss_pred eecCCCCceeeEe--eCCHHH----HHHHHHHHHHhCCc-cceeeEEeeC-CCeEEEeecC
Q psy10158 278 ERDSEGKEIRYPV--ILSNAE----KLISRKVCLAFKQT-VCGFDLLRAN-GKSFVCDVNG 330 (1266)
Q Consensus 278 RRN~hgKEiRypV--~LT~eE----K~IA~kaakAFGq~-VCGfDLLRs~-ggsyVcDVNG 330 (1266)
+.+.+.++..+.+ .+++++ +++|.+++++||.. +|+||++..+ |++||+|||.
T Consensus 208 ~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~ 268 (304)
T PRK01372 208 EAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNT 268 (304)
T ss_pred eccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecC
Confidence 6677766554443 577654 57899999999984 8999999986 7899999995
No 17
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.57 E-value=3.7e-15 Score=184.01 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=128.0
Q ss_pred CccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccC
Q psy10158 130 NLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTS 209 (1266)
Q Consensus 130 dl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s 209 (1266)
...+..+.+||..+.++|+++|||+|++.++.... +..+.+. .+..|+|+||.+|.
T Consensus 204 s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~---------ea~~~~~----~ig~PvVVKP~~g~----------- 259 (864)
T TIGR02068 204 SAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAE---------DAWEAAQ----DLGYPVVIKPYDGN----------- 259 (864)
T ss_pred cHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEECCCC-----------
Confidence 44566788999999999999999999998885311 1111221 12389999999997
Q ss_pred CCCchhhhhcccCCccccccCCcc-cccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCC-------------
Q psy10158 210 AGGGSQRLFRKIGSRSSVYSPESR-VRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDG------------- 275 (1266)
Q Consensus 210 ~GgGv~~LfrKignkSS~y~p~s~-vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG------------- 275 (1266)
+|.|+. + ++.+....-..-.. ......+|+|+||+ |.|+||+|||+++++|+.|.+|.|-|
T Consensus 260 ~G~GV~-l--~v~s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~ 334 (864)
T TIGR02068 260 HGRGVT-I--NILTRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQI 334 (864)
T ss_pred CccCEE-E--EeCCHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHh
Confidence 477874 3 12222111110001 12356799999996 89999999999999999999997644
Q ss_pred -----------------------------------------c---e--eecCCCCceeeEe--eCCHHHHHHHHHHHHHh
Q psy10158 276 -----------------------------------------K---V--ERDSEGKEIRYPV--ILSNAEKLISRKVCLAF 307 (1266)
Q Consensus 276 -----------------------------------------~---V--RRN~hgKEiRypV--~LT~eEK~IA~kaakAF 307 (1266)
+ + ++|++.|+...-| .++++.+++|.++|+++
T Consensus 335 n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~ 414 (864)
T TIGR02068 335 NTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKII 414 (864)
T ss_pred ccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHh
Confidence 1 3 5678888888877 99999999999999999
Q ss_pred CCccceeeEEee--------CCCeEEEeecCc
Q psy10158 308 KQTVCGFDLLRA--------NGKSFVCDVNGF 331 (1266)
Q Consensus 308 Gq~VCGfDLLRs--------~ggsyVcDVNGw 331 (1266)
|++||||||+-. +++ .|||||+=
T Consensus 415 gl~i~gvD~i~~di~~~~~~~~~-~iiEvN~~ 445 (864)
T TIGR02068 415 GLDIAGVDIVTEDISRPLRDTDG-AIVEVNAA 445 (864)
T ss_pred CCCeEEEEEEecCCCCCccccCc-EEEEEcCC
Confidence 999999999753 333 79999964
No 18
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.54 E-value=1.9e-14 Score=174.99 Aligned_cols=180 Identities=19% Similarity=0.306 Sum_probs=133.0
Q ss_pred cccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEe
Q psy10158 127 VINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYY 206 (1266)
Q Consensus 127 ~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYy 206 (1266)
..+...+..++.||..+.++|+++|||+|++.++.... +..+.+ ..+..|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~---------~a~~~a----~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAE---------DAWEAA----EEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHH---------HHHHHH----HHcCCCEEEEECCCC--------
Confidence 45666677889999999999999999999998875311 011111 123499999999997
Q ss_pred ccCCCCchhhhhcccCCccccccC-CcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCC--CCc-------
Q psy10158 207 PTSAGGGSQRLFRKIGSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPAL--DGK------- 276 (1266)
Q Consensus 207 p~s~GgGv~~LfrKignkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvv--DG~------- 276 (1266)
.|.|+. + ++.+....-.. +...+....+|+||||+ |.|+||++||+++++|+.|..|-+ ||.
T Consensus 261 ---~G~GV~-~--~v~~~~el~~a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li 332 (727)
T PRK14016 261 ---HGRGVT-V--NITTREEIEAAYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELI 332 (727)
T ss_pred ---CCCceE-E--ecCCHHHHHHHHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHH
Confidence 477774 3 12222111000 00112356899999996 899999999999999999999854 332
Q ss_pred ------------------------------------------------ee--ecCCCCceeeEee--CCHHHHHHHHHHH
Q psy10158 277 ------------------------------------------------VE--RDSEGKEIRYPVI--LSNAEKLISRKVC 304 (1266)
Q Consensus 277 ------------------------------------------------VR--RN~hgKEiRypV~--LT~eEK~IA~kaa 304 (1266)
+| .|.+.|+....+. ++++-+++|.+||
T Consensus 333 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa 412 (727)
T PRK14016 333 EIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAA 412 (727)
T ss_pred HHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHH
Confidence 23 3888888888886 9999999999999
Q ss_pred HHhCCccceeeEEeeC-------CCeEEEeecCceecc
Q psy10158 305 LAFKQTVCGFDLLRAN-------GKSFVCDVNGFSFVK 335 (1266)
Q Consensus 305 kAFGq~VCGfDLLRs~-------ggsyVcDVNGwSFVK 335 (1266)
+++|++||||||+..+ .+-.|||||.=.=++
T Consensus 413 ~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~ 450 (727)
T PRK14016 413 KIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLR 450 (727)
T ss_pred HhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchh
Confidence 9999999999998853 456999999764443
No 19
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.49 E-value=2e-13 Score=166.67 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=123.3
Q ss_pred cccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE-EEcCeEecCCEEEecccccCcceEEE
Q psy10158 127 VINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV-EVNGIVFNKPFVEKPVSAEDHNIYIY 205 (1266)
Q Consensus 127 ~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv~GedHNI~IY 205 (1266)
..|...+-.+.+||..+.++|+++|||+|++..+.... +..+.+ .+.| .|+|+||++|.
T Consensus 476 ~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e---------~a~~~~~~~~g----~PvVVKP~~g~------- 535 (752)
T PRK02471 476 SKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLE---------EALADYSLFAD----KAIVVKPKSTN------- 535 (752)
T ss_pred CCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHH---------HHHHHHHHhcC----CCEEEEECCCC-------
Confidence 33444445577899999999999999999998875311 111112 2234 89999999998
Q ss_pred eccCCCCchhhhhcccCCccccccCCc-ccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCC--CCc--ee--
Q psy10158 206 YPTSAGGGSQRLFRKIGSRSSVYSPES-RVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPAL--DGK--VE-- 278 (1266)
Q Consensus 206 yp~s~GgGv~~LfrKignkSS~y~p~s-~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvv--DG~--VR-- 278 (1266)
.|.|+. +++.+.+.......-. ..+.+..+|.||||+ |.|+||+|||+++++|+.|.++.| ||+ ++
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 688984 7765544333222111 123466799999995 999999999999999999999966 454 10
Q ss_pred ---ec--------------------------------------------------CCCCceeeE--eeCCHHHHHHHHHH
Q psy10158 279 ---RD--------------------------------------------------SEGKEIRYP--VILSNAEKLISRKV 303 (1266)
Q Consensus 279 ---RN--------------------------------------------------~hgKEiRyp--V~LT~eEK~IA~ka 303 (1266)
.| ++-|+...- -.+.++-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 11 111221111 14556778999999
Q ss_pred HHHhCCccceeeEEeeC-------C--CeEEEeecC
Q psy10158 304 CLAFKQTVCGFDLLRAN-------G--KSFVCDVNG 330 (1266)
Q Consensus 304 akAFGq~VCGfDLLRs~-------g--gsyVcDVNG 330 (1266)
|+++|+.||||||+-.+ . +-.|||||+
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~ 724 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNF 724 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecC
Confidence 99999999999999643 1 557899996
No 20
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.42 E-value=5.7e-12 Score=136.82 Aligned_cols=208 Identities=16% Similarity=0.173 Sum_probs=132.5
Q ss_pred ccceeeccccCCCcH-HHHHHHHhhcCCcccc-CccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 99 IVDCLISFHSKGFPL-EKAIKYANLRKPFVIN-NLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL-~KAi~Y~klrkp~~lN-dl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.+|++++..--.+.. ..+.+.++..+.+.+| +.....+.+||....++|+++|||+|++..+.++..+.. ++. ..
T Consensus 63 ~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~--~~~-~~ 139 (315)
T TIGR01205 63 GIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASAD--ELE-CE 139 (315)
T ss_pred CCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccch--hhh-HH
Confidence 479998854222222 3566777888866665 588999999999999999999999999998862211000 000 00
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC-CcccccCcceEEeeccCCCCceEEE
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKV 255 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKV 255 (1266)
... ..+..|+|+||..|. .|.|+. ++.|....... +.....+..+|+||||+ |.++.|
T Consensus 140 ~~~----~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v 198 (315)
T TIGR01205 140 QVA----EPLGFPVIVKPAREG-----------SSVGVS----KVKSEEELQAALDEAFEYDEEVLVEQFIK--GRELEV 198 (315)
T ss_pred HHH----HhcCCCEEEEeCCCC-----------CccCEE----EECCHHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEE
Confidence 000 123589999999986 345552 22222211110 00112356799999995 999999
Q ss_pred EEEC-CceeEEeeccCCCC-CCceeecCCCCceee--EeeCCHHH----HHHHHHHHHHhCC-ccceeeEEeeC-CCeEE
Q psy10158 256 YTVG-PDYAHAEARKSPAL-DGKVERDSEGKEIRY--PVILSNAE----KLISRKVCLAFKQ-TVCGFDLLRAN-GKSFV 325 (1266)
Q Consensus 256 YtVG-p~~vhAe~RKSPvv-DG~VRRN~hgKEiRy--pV~LT~eE----K~IA~kaakAFGq-~VCGfDLLRs~-ggsyV 325 (1266)
.++| +.....+.+-.... --.+..+.+.++..+ |..|++++ +++|.++++++|. .+|+||++... |++||
T Consensus 199 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~v 278 (315)
T TIGR01205 199 SILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYL 278 (315)
T ss_pred EEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEE
Confidence 9999 54333333322110 001333434444443 34577765 7899999999998 69999999885 57999
Q ss_pred EeecC
Q psy10158 326 CDVNG 330 (1266)
Q Consensus 326 cDVNG 330 (1266)
+|||.
T Consensus 279 iEvN~ 283 (315)
T TIGR01205 279 NEINT 283 (315)
T ss_pred EEeeC
Confidence 99995
No 21
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.35 E-value=2.8e-11 Score=131.82 Aligned_cols=231 Identities=16% Similarity=0.211 Sum_probs=152.0
Q ss_pred hhHHHHHHHHhhcCcEEEEEecccc-cccccccccccceeeccccCCCcH-HHHHHHHhhcCCccc-cCccchhhhhHHH
Q psy10158 65 KPMKEILTRLEEFEFIKMIVFSEET-IQKPVDEWPIVDCLISFHSKGFPL-EKAIKYANLRKPFVI-NNLNMQYDIQDRR 141 (1266)
Q Consensus 65 kPMr~IL~RL~~~g~f~viiF~dkv-ILe~vE~WP~cD~LIsFfS~GfPL-~KAi~Y~klrkp~~l-Ndl~~Q~ilrDRr 141 (1266)
+--++|++=|.+.|. +++.+.... .+..+.....+|+++......+-. ..+.++++..+.+.+ ++..+..+.+||.
T Consensus 19 ~s~~~i~~al~~~g~-~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~ 97 (299)
T PRK14571 19 RSGERVKKALEKLGY-EVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKL 97 (299)
T ss_pred HHHHHHHHHHHHcCC-eEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHH
Confidence 555778888877654 455554332 223333345689998876443333 456677777775555 6689999999999
Q ss_pred HHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhccc
Q psy10158 142 KVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKI 221 (1266)
Q Consensus 142 ~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKi 221 (1266)
.+.++|+ +|||+|++..+.... . ...+..|+|+||.+|. .|.|+. + +
T Consensus 98 ~~k~~l~-~~ip~p~~~~~~~~~---------~--------~~~l~~P~vvKP~~g~-----------~s~Gv~-~---v 144 (299)
T PRK14571 98 LTYRFLK-GTVEIPDFVEIKEFM---------K--------TSPLGYPCVVKPRREG-----------SSIGVF-I---C 144 (299)
T ss_pred HHHHHHh-cCCCCCCEEEEechh---------h--------hhhcCCCEEEecCCCC-----------CcCCEE-E---E
Confidence 9999998 589999998884310 0 1124589999999986 355664 2 2
Q ss_pred CCccccccC-CcccccCcceEEeeccCCCCceEEEEEECCc---eeEEeeccCCCCCCc--eeecCCCCceee--EeeCC
Q psy10158 222 GSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKVYTVGPD---YAHAEARKSPALDGK--VERDSEGKEIRY--PVILS 293 (1266)
Q Consensus 222 gnkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~---~vhAe~RKSPvvDG~--VRRN~hgKEiRy--pV~LT 293 (1266)
.|....... ....+....+|.||||+ |.++.|-++|.. .+.+....-|. ++. +..+.++++..+ |..|+
T Consensus 145 ~~~~el~~~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~~-~~~~~~~~k~~~g~~~~~~p~~l~ 221 (299)
T PRK14571 145 ESDEEFQHALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRPK-RRFYDYVAKYTKGETEFILPAPLN 221 (299)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEecC-CCccccccccCCCCeeEEeCCCCC
Confidence 222211110 01122356799999996 899999999853 35555433221 211 233444444443 55687
Q ss_pred HHH----HHHHHHHHHHhCC-ccceeeEEeeCCCeEEEeecCce
Q psy10158 294 NAE----KLISRKVCLAFKQ-TVCGFDLLRANGKSFVCDVNGFS 332 (1266)
Q Consensus 294 ~eE----K~IA~kaakAFGq-~VCGfDLLRs~ggsyVcDVNGwS 332 (1266)
++. +++|.++++++|. .+|+||++-.+|++||+|||.--
T Consensus 222 ~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~P 265 (299)
T PRK14571 222 PEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVP 265 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCC
Confidence 764 4589999999995 79999998888999999999763
No 22
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.33 E-value=1e-12 Score=159.84 Aligned_cols=170 Identities=21% Similarity=0.341 Sum_probs=117.3
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCc
Q psy10158 134 QYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGG 213 (1266)
Q Consensus 134 Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgG 213 (1266)
-.+..||..+-++|+++|||+|....+..... . ...+-.+.| .|+|+||++|. +|.|
T Consensus 470 ~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~------a--~~~~~~~~g----~PVVVKP~~g~-----------~G~G 526 (737)
T TIGR01435 470 PLIMENKVVTKKVLAEAGFRVPFGDEFSSQAL------A--LEAFSLFEN----KAIVVKPKSTN-----------YGLG 526 (737)
T ss_pred HHHhcCHHHHHHHHHHcCcCCCCEEEECCHHH------H--HHHHHHhcC----CCEEEeeCCCC-----------CcCC
Confidence 35778999999999999999999988854210 0 011112334 89999999998 6889
Q ss_pred hhhhhcccCCccccccCC-c-ccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCC--CCc--ee-----ecC-
Q psy10158 214 SQRLFRKIGSRSSVYSPE-S-RVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPAL--DGK--VE-----RDS- 281 (1266)
Q Consensus 214 v~~LfrKignkSS~y~p~-s-~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvv--DG~--VR-----RN~- 281 (1266)
+- +|+.+.+.. ++... . ..+.+..+|.||||+ |+|+||+|+|+++++|+.|..+-| ||+ ++ .|.
T Consensus 527 Vs-i~~~~~~~e-el~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~ 602 (737)
T TIGR01435 527 IT-IFKNGFTLE-DFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTD 602 (737)
T ss_pred eE-EecCcCCHH-HHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccC
Confidence 84 555432211 22111 1 224567899999996 999999999999999999999877 554 21 121
Q ss_pred --CCCceeeE--------------------------------------------e----eCCHHHHHHHHHHHHHhCCcc
Q psy10158 282 --EGKEIRYP--------------------------------------------V----ILSNAEKLISRKVCLAFKQTV 311 (1266)
Q Consensus 282 --hgKEiRyp--------------------------------------------V----~LT~eEK~IA~kaakAFGq~V 311 (1266)
.|++-+.| + .+-++-+++|.+||+|+|+.|
T Consensus 603 p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~i 682 (737)
T TIGR01435 603 PLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAAI 682 (737)
T ss_pred cccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCCE
Confidence 12221211 1 344667899999999999999
Q ss_pred ceeeEEeeC-CC--------eEEEeecC
Q psy10158 312 CGFDLLRAN-GK--------SFVCDVNG 330 (1266)
Q Consensus 312 CGfDLLRs~-gg--------syVcDVNG 330 (1266)
|||||+--+ .. --|||||-
T Consensus 683 ~GVDii~~di~~p~~~~~~~~~iiEvN~ 710 (737)
T TIGR01435 683 CGVDLIIPDETIPDTDKHAIWGVIEANF 710 (737)
T ss_pred EEEEEEecCCCCCccccccceEEEEEcC
Confidence 999999532 22 34789983
No 23
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.32 E-value=9.2e-13 Score=136.49 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=80.8
Q ss_pred EEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccC--cceEEeeccCC-CCceEEEEEECCceeEEe
Q psy10158 190 FVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKS--GSFIYEDFMPT-DGTDVKVYTVGPDYAHAE 266 (1266)
Q Consensus 190 fVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~--gSyIYEEFI~t-~GtDVKVYtVGp~~vhAe 266 (1266)
+|+||+.|- .|.|+-++-+.-.|.++.+. .+-.+ ..++.|+||+. ..=|.|+++++++++||.
T Consensus 34 ~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av 99 (173)
T PF02955_consen 34 IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAV 99 (173)
T ss_dssp EEEEESS-------------TTTT-EEE-TT-TTHHHHHH---HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEE
T ss_pred EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH---HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHe
Confidence 999999997 35565433332222222222 22233 45999999995 333999999999999999
Q ss_pred eccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHh---CCccceeeEEeeCCCeEEEeecCce
Q psy10158 267 ARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAF---KQTVCGFDLLRANGKSFVCDVNGFS 332 (1266)
Q Consensus 267 ~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAF---Gq~VCGfDLLRs~ggsyVcDVNGwS 332 (1266)
.|... .|+||.|.+-|+...++.||++|++||.+++..+ |+-.+|+|+| +.|+.|||=.|
T Consensus 100 ~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 100 RRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLREDGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp EEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE----TTEEEEEE-SS
T ss_pred ecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhcCcEEEEEecc----ccceEEEeccC
Confidence 99985 9999999999999999999999999999999877 7889999999 46999999544
No 24
>PRK06849 hypothetical protein; Provisional
Probab=99.27 E-value=2.6e-11 Score=136.63 Aligned_cols=194 Identities=12% Similarity=0.186 Sum_probs=128.6
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV 179 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I 179 (1266)
+|+||+-...-+-+.++.+.++..-.+..++.+....++||...++++++.|||+|++..++.... + .+..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~------l---~~~~ 147 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEA------I---RNFM 147 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHH------H---HHHh
Confidence 588888776654445554444434456679999999999999999999999999999999864110 1 1111
Q ss_pred -EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEE
Q psy10158 180 -EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTV 258 (1266)
Q Consensus 180 -~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtV 258 (1266)
... ..|+|+||+.|. .|.|+.+ +.+. .+........+..+|+||||+-....+-+++.
T Consensus 148 ~~~~----~~P~vlKP~~~~-----------~~~~v~~----~~~~--~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 148 FKTP----HTPYVLKPIYSR-----------FVRRVDL----LPKE--AALKELPISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred hcCC----CCcEEEEeCccc-----------CCCeEEE----ecCH--HHhcccccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 112 389999999986 2445532 2221 11111122334579999999955556777888
Q ss_pred CCceeEEeeccCCCCCCceeecCCCC-ceeeEeeCCHHHHHHHHHHHHHhCCc-cceeeEEee-CCCeEEEeecC
Q psy10158 259 GPDYAHAEARKSPALDGKVERDSEGK-EIRYPVILSNAEKLISRKVCLAFKQT-VCGFDLLRA-NGKSFVCDVNG 330 (1266)
Q Consensus 259 Gp~~vhAe~RKSPvvDG~VRRN~hgK-EiRypV~LT~eEK~IA~kaakAFGq~-VCGfDLLRs-~ggsyVcDVNG 330 (1266)
++++++...... ..+. .++ .+.+.....++=.++|.++++++|.+ +++||++.. +|+.||+|||.
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNp 274 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNP 274 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecC
Confidence 888665443221 1111 111 12222234566678999999999987 999999998 78899999993
No 25
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.24 E-value=4.3e-11 Score=130.39 Aligned_cols=194 Identities=14% Similarity=0.185 Sum_probs=127.0
Q ss_pred cceeeccccCCCcH-HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCC
Q psy10158 100 VDCLISFHSKGFPL-EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESED 177 (1266)
Q Consensus 100 cD~LIsFfS~GfPL-~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D 177 (1266)
.|++|+.+....++ .+..+.++..+ +++.|+.....+++||....++|+++|||+|++..+.... +..+
T Consensus 70 id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---------~~~~ 140 (326)
T PRK12767 70 IDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLE---------DFKA 140 (326)
T ss_pred CCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHH---------HHHh
Confidence 57777764333333 33333344444 4678999999999999999999999999999998875311 1111
Q ss_pred eEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEE
Q psy10158 178 HVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYT 257 (1266)
Q Consensus 178 ~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYt 257 (1266)
.+.. ..+..|+|+||.+|. .|.|+. +++ |.. ++ ...+.....+|.||||.-..-.|-+|+
T Consensus 141 ~~~~--~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~~-el--~~~~~~~~~~lvqeyi~G~e~~v~~~~ 200 (326)
T PRK12767 141 ALAK--GELQFPLFVKPRDGS-----------ASIGVF-KVN---DKE-EL--EFLLEYVPNLIIQEFIEGQEYTVDVLC 200 (326)
T ss_pred hhhc--ccCCCCEEEEeCCCC-----------CccCeE-EeC---CHH-HH--HHHHHhCCCeEEEeccCCceEEEEEEE
Confidence 0111 124589999999986 355653 332 111 11 112233348999999943345666676
Q ss_pred E-CCceeEEeeccCCCCCCceeecCCCCce-eeEeeCCHHHHHHHHHHHHHhCC-ccceeeEEeeCCCeEEEeecC
Q psy10158 258 V-GPDYAHAEARKSPALDGKVERDSEGKEI-RYPVILSNAEKLISRKVCLAFKQ-TVCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 258 V-Gp~~vhAe~RKSPvvDG~VRRN~hgKEi-RypV~LT~eEK~IA~kaakAFGq-~VCGfDLLRs~ggsyVcDVNG 330 (1266)
. ++++++...++.- ...+|.. ...+...++=+++|.++++++|. .+++||++...|++||+|||.
T Consensus 201 ~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 201 DLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred cCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 6 6677776665531 0112222 22234457778999999999999 499999999999999999997
No 26
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.21 E-value=2.9e-10 Score=124.73 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=145.0
Q ss_pred hhHHHHHHHHhhcCcEEEEEec-c-cccccccccccccceeeccccCCCcH-HHHHHHHhhcC-CccccCccchhhhhHH
Q psy10158 65 KPMKEILTRLEEFEFIKMIVFS-E-ETIQKPVDEWPIVDCLISFHSKGFPL-EKAIKYANLRK-PFVINNLNMQYDIQDR 140 (1266)
Q Consensus 65 kPMr~IL~RL~~~g~f~viiF~-d-kvILe~vE~WP~cD~LIsFfS~GfPL-~KAi~Y~klrk-p~~lNdl~~Q~ilrDR 140 (1266)
+-.++|++-|.+.| ++++++. + +.++..+..- ..|+++..+.-.+.. ..+.+.+++.+ ||+-++..+..+.+||
T Consensus 22 ~s~~~v~~aL~~~g-~~~~~~~~~~~~~~~~l~~~-~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK 99 (296)
T PRK14569 22 KSGKAVLDSLISQG-YDAVGVDASGKELVAKLLEL-KPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDK 99 (296)
T ss_pred HHHHHHHHHHHHcC-CEEEEEcCCchhHHHHhhcc-CCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCH
Confidence 55678888887755 4666664 2 2333222211 356555444322333 56667777776 5667889999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcc
Q psy10158 141 RKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRK 220 (1266)
Q Consensus 141 r~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrK 220 (1266)
..+.++|+++|||+|++.++.... ..+ ..+..|+|+||.+|. .|.|+. +
T Consensus 100 ~~~k~~l~~~gIptp~~~~~~~~~------------~~~----~~~~~P~vVKP~~gg-----------ss~Gv~----~ 148 (296)
T PRK14569 100 MISKEILMHHRMPTPMAKFLTDKL------------VAE----DEISFPVAVKPSSGG-----------SSIATF----K 148 (296)
T ss_pred HHHHHHHHHCCCCCCCeEEEchhh------------hhH----hhcCCCEEEEeCCCC-----------CCcCeE----E
Confidence 999999999999999998875310 001 234589999999875 345542 2
Q ss_pred cCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCceee-cCCCCceee--EeeCCH---
Q psy10158 221 IGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER-DSEGKEIRY--PVILSN--- 294 (1266)
Q Consensus 221 ignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRR-N~hgKEiRy--pV~LT~--- 294 (1266)
+.|....-..-........+|+||||+ |.++.|.++|+....+.....+ +..+.. +.+.++..+ |..+.+
T Consensus 149 v~~~~eL~~a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~~~k~~~~~~~~~P~~l~~~~~ 224 (296)
T PRK14569 149 VKSIQELKHAYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDYESKYSGKSIYHSPSGLCEQKE 224 (296)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCChhhccCCCcEEEeCCCCCHHHH
Confidence 222221111000112234789999995 8999999999875544444332 222211 222333433 444543
Q ss_pred -HHHHHHHHHHHHhCC-ccceeeEEee-CCCeEEEeec
Q psy10158 295 -AEKLISRKVCLAFKQ-TVCGFDLLRA-NGKSFVCDVN 329 (1266)
Q Consensus 295 -eEK~IA~kaakAFGq-~VCGfDLLRs-~ggsyVcDVN 329 (1266)
+=+++|.++++++|. .+|+||++-. +|.+||+|||
T Consensus 225 ~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN 262 (296)
T PRK14569 225 LEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEIN 262 (296)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEee
Confidence 445689999999995 6999999876 5789999999
No 27
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.13 E-value=3.9e-10 Score=125.85 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=129.2
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHH-HhcCCCCCCeEEeccCCCCCccccccccCCe
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALL-EKEGIEIPRYAVLDRESPDPVKHELVESEDH 178 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL-~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~ 178 (1266)
+|++++-+.. .+.. +++.++..+.++.++.....+.+||+...++| +++|||+|++..+.... +....
T Consensus 63 id~v~~~~e~-v~~~-~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~---------~~~~~ 131 (380)
T TIGR01142 63 PDYIVPEIEA-IATD-ALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLD---------ELREA 131 (380)
T ss_pred CCEEEeccCc-cCHH-HHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 5555554332 3333 34566666666778888999999999999985 89999999998886411 01111
Q ss_pred EEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-ccc-----ccCcceEEeeccCCCCce
Q psy10158 179 VEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRV-----RKSGSFIYEDFMPTDGTD 252 (1266)
Q Consensus 179 I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~v-----r~~gSyIYEEFI~t~GtD 252 (1266)
+ ..+..|+|+||++|. .|.|+. +.+.. . ++..- ... ..++.+|.||||+ .+..
T Consensus 132 ~----~~~g~P~VvKP~~g~-----------~s~gv~-~v~~~---~-el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E 190 (380)
T TIGR01142 132 V----EKIGYPCVVKPVMSS-----------SGKGQS-VVRGP---E-DIEKAWEYAQEGARGGAGRVIVEEFID-FDYE 190 (380)
T ss_pred H----HHcCCCEEEEECCCc-----------CCCCeE-EECCH---H-HHHHHHHHHHhhccCCCCCEEEEEecC-CCEE
Confidence 1 123489999999987 366664 33321 1 11100 011 1246799999996 3478
Q ss_pred EEEEEE---CCceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHH----HHHHHHHHHHhCC-ccceeeEEeeCCCeE
Q psy10158 253 VKVYTV---GPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAE----KLISRKVCLAFKQ-TVCGFDLLRANGKSF 324 (1266)
Q Consensus 253 VKVYtV---Gp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eE----K~IA~kaakAFGq-~VCGfDLLRs~ggsy 324 (1266)
+-|.++ +++++.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-.++++|
T Consensus 191 ~sv~~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~ 264 (380)
T TIGR01142 191 ITLLTVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVI 264 (380)
T ss_pred EEEEEEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEE
Confidence 888776 3332222 11 12222221112334567788764 4678899999997 778999999989999
Q ss_pred EEeecC-------ceecccCchhhHH
Q psy10158 325 VCDVNG-------FSFVKNSNKYYDD 343 (1266)
Q Consensus 325 VcDVNG-------wSFVK~n~kYYDd 343 (1266)
|+|||. |..+..+..+|+.
T Consensus 265 viEinpR~~~~~~~~~~~~g~~~~~~ 290 (380)
T TIGR01142 265 FSEVSPRPHDTGMVTLISQGLSEFAL 290 (380)
T ss_pred EEEeecCCCCCceEEeeecCCCHHHH
Confidence 999992 4455555666654
No 28
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.12 E-value=5.2e-10 Score=124.60 Aligned_cols=205 Identities=18% Similarity=0.213 Sum_probs=130.3
Q ss_pred ccceeeccccCCCcHH-HHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 99 IVDCLISFHSKGFPLE-KAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~-KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.+|++++-..-.+..+ ...+++++.+ ||+=++..+.++.+||..+.++|+++|||+|++..+......+ ..+ .
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~---~ 155 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEE--ASL---A 155 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccch--hhH---H
Confidence 5899988754334443 5666777776 5555788999999999999999999999999999886431100 000 0
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC-CcccccCcceEEeeccCCCCceEEE
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKV 255 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKV 255 (1266)
... ..+..|+|+||.+|. .+.|+. +.+ +....... +...+.+..+|+|+||+ |.++.|
T Consensus 156 ~~~----~~~~~P~vVKP~~~g-----------sS~Gv~-~v~---~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v 214 (333)
T PRK01966 156 EIE----AKLGLPVFVKPANLG-----------SSVGIS-KVK---NEEELAAALDLAFEYDRKVLVEQGIK--GREIEC 214 (333)
T ss_pred HHH----HhcCCCEEEEeCCCC-----------CccCEE-EEC---CHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEE
Confidence 001 124589999999985 355653 222 11111110 01123467899999998 899999
Q ss_pred EEECCc-eeEEeeccCCCCCCce--eecC-CC-CceeeEeeCCHHH----HHHHHHHHHHhCC-ccceeeEEee-CCCeE
Q psy10158 256 YTVGPD-YAHAEARKSPALDGKV--ERDS-EG-KEIRYPVILSNAE----KLISRKVCLAFKQ-TVCGFDLLRA-NGKSF 324 (1266)
Q Consensus 256 YtVGp~-~vhAe~RKSPvvDG~V--RRN~-hg-KEiRypV~LT~eE----K~IA~kaakAFGq-~VCGfDLLRs-~ggsy 324 (1266)
-++|.+ .+......-+. ++.+ ...- .| .+...|..|+++. +++|.++++++|. .+|.+|++-. +|++|
T Consensus 215 ~vl~~~~~~~~~~ei~~~-~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~ 293 (333)
T PRK01966 215 AVLGNDPKASVPGEIVKP-DDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIY 293 (333)
T ss_pred EEECCCCeEcccEEEecC-CceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEE
Confidence 999952 11111111100 1111 1111 12 2334566777654 6889999999997 7899999986 56799
Q ss_pred EEeecC
Q psy10158 325 VCDVNG 330 (1266)
Q Consensus 325 VcDVNG 330 (1266)
|+|||-
T Consensus 294 vlEiNt 299 (333)
T PRK01966 294 LNEINT 299 (333)
T ss_pred EEEeeC
Confidence 999993
No 29
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.12 E-value=1.5e-09 Score=121.63 Aligned_cols=188 Identities=12% Similarity=0.144 Sum_probs=120.2
Q ss_pred HHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEe
Q psy10158 115 KAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEK 193 (1266)
Q Consensus 115 KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeK 193 (1266)
...+++++.+ ||+-++..+..+.+||..+.++|+++|||+|++..+.+.... ...++.+..- ..+..|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~------~~~~~~~~~~-~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYL------NSPRKTLLKL-ESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccc------cChHHHHHHH-HhcCCCEEEe
Confidence 5666777776 555678899999999999999999999999999988653210 0000111100 1245899999
Q ss_pred cccccCcceEEEeccCCCCchhhhhcccCCccccccC-CcccccCcceEEeeccCCCCceEEEEEECC----ce---eE-
Q psy10158 194 PVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESRVRKSGSFIYEDFMPTDGTDVKVYTVGP----DY---AH- 264 (1266)
Q Consensus 194 pv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p-~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp----~~---vh- 264 (1266)
|++|. .+.|+. + +.|....... +.....+..+|.||||+ |+++.|-++|. +. +.
T Consensus 178 P~~gg-----------sS~GV~-~---v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l~ 240 (347)
T PRK14572 178 PVEGG-----------SSVSTY-K---ITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIALP 240 (347)
T ss_pred cCCCC-----------CCCCEE-E---ECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceecc
Confidence 99985 234442 1 2221111000 00112456799999995 89999999973 21 11
Q ss_pred -EeeccCCCCCCc---eeecCCCCce--eeEeeCCHH----HHHHHHHHHHHhCCc-cceeeEEeeCCCeEEEeecC
Q psy10158 265 -AEARKSPALDGK---VERDSEGKEI--RYPVILSNA----EKLISRKVCLAFKQT-VCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 265 -Ae~RKSPvvDG~---VRRN~hgKEi--RypV~LT~e----EK~IA~kaakAFGq~-VCGfDLLRs~ggsyVcDVNG 330 (1266)
.|-+. .|. ++..-+.++. ..|..|+++ =+++|.++++++|.. ++++|++-.+|++||+|||.
T Consensus 241 ~~ei~~----~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt 313 (347)
T PRK14572 241 ATEIVP----GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNT 313 (347)
T ss_pred cEEEec----CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeC
Confidence 12221 121 2223333333 235567765 378999999999965 99999999889999999995
No 30
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.09 E-value=2.4e-09 Score=119.74 Aligned_cols=198 Identities=15% Similarity=0.212 Sum_probs=133.4
Q ss_pred ccceeeccccCCCcHH-HHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 99 IVDCLISFHSKGFPLE-KAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~-KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.+|++++-..-++-.+ ....++++.+ ||+-++..+.++.+||..+.++|+++|||+|++.++.....
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~~----------- 158 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADER----------- 158 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCch-----------
Confidence 4788888755455553 7778888886 56668999999999999999999999999999998864211
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cccccCcceEEeeccCCCCceEEE
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRVRKSGSFIYEDFMPTDGTDVKV 255 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~vr~~gSyIYEEFI~t~GtDVKV 255 (1266)
+. -..+..|+|+||.+|- .+.|+. + +.|....-..- ...+.+..+|.||||+ |.++-|
T Consensus 159 --~~--~~~l~~P~iVKP~~~g-----------sS~Gv~-~---v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv 217 (343)
T PRK14568 159 --PD--AATLTYPVFVKPARSG-----------SSFGVS-K---VNSADELDYAIESARQYDSKVLIEEAVV--GSEVGC 217 (343)
T ss_pred --hh--hhhcCCCEEEEeCCCC-----------CCCCEE-E---eCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEE
Confidence 00 1235689999999985 245553 2 22222111100 0123466799999996 888988
Q ss_pred EEECCc---eeEEeeccCCCCCCceeec----CC----CCceeeEeeCCHHH----HHHHHHHHHHhCC-ccceeeEEee
Q psy10158 256 YTVGPD---YAHAEARKSPALDGKVERD----SE----GKEIRYPVILSNAE----KLISRKVCLAFKQ-TVCGFDLLRA 319 (1266)
Q Consensus 256 YtVGp~---~vhAe~RKSPvvDG~VRRN----~h----gKEiRypV~LT~eE----K~IA~kaakAFGq-~VCGfDLLRs 319 (1266)
-++|.. ++....+..+ ..|.++.. .+ ..+...|..|+++. +++|.++++++|. .+|.||++-.
T Consensus 218 ~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~ 296 (343)
T PRK14568 218 AVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQ 296 (343)
T ss_pred EEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEe
Confidence 888753 2222222322 13333311 11 11234667787653 5889999999999 7999999977
Q ss_pred -CCCeEEEeec
Q psy10158 320 -NGKSFVCDVN 329 (1266)
Q Consensus 320 -~ggsyVcDVN 329 (1266)
+|.+||+|||
T Consensus 297 ~~g~~~llEIN 307 (343)
T PRK14568 297 EDGTVVLNEVN 307 (343)
T ss_pred CCCCEEEEEee
Confidence 6779999999
No 31
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.04 E-value=9.8e-10 Score=124.76 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=123.1
Q ss_pred CCcH-HHHHHHHhhcCC-ccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEec
Q psy10158 110 GFPL-EKAIKYANLRKP-FVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFN 187 (1266)
Q Consensus 110 GfPL-~KAi~Y~klrkp-~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~ 187 (1266)
..|| .....+++..+. +.-.+..+-.+.+||..+.++|+++|||+|++..+... .+..+++. .+.
T Consensus 36 E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~---------~ea~~~~~----~~g 102 (379)
T PRK13790 36 EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK---------KDALTYIE----NCE 102 (379)
T ss_pred cHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH---------HHHHHHHH----hcC
Confidence 3355 456667777774 44466677788899999999999999999999877531 11122222 134
Q ss_pred CCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcc---cccCcceEEeeccCCCCceEEEEEECCceeE
Q psy10158 188 KPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESR---VRKSGSFIYEDFMPTDGTDVKVYTVGPDYAH 264 (1266)
Q Consensus 188 kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~---vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vh 264 (1266)
.|+|+||..|. .|.|+. +.+ |....-..-.. ...++.+|+||||.-..-.|-+++-|..++.
T Consensus 103 ~PvVvKp~~~~-----------~gkGV~-iv~---~~~el~~a~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~ 167 (379)
T PRK13790 103 LPVVVKKDGLA-----------AGKGVI-IAD---TIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVP 167 (379)
T ss_pred CCEEEEeCCCC-----------CCCCEE-EEC---CHHHHHHHHHHHHhcCCCCeEEEEEcccCceEEEEEEeeCCEEEe
Confidence 89999999876 466663 333 21111000001 1235679999999755578888887765432
Q ss_pred --EeeccCC-CCCCceeecCCCCceeeEe-eCCHHH-----HHHHHHHHHHh---CCccce---eeEEeeCCCeEEEeec
Q psy10158 265 --AEARKSP-ALDGKVERDSEGKEIRYPV-ILSNAE-----KLISRKVCLAF---KQTVCG---FDLLRANGKSFVCDVN 329 (1266)
Q Consensus 265 --Ae~RKSP-vvDG~VRRN~hgKEiRypV-~LT~eE-----K~IA~kaakAF---Gq~VCG---fDLLRs~ggsyVcDVN 329 (1266)
+..++.. ..||...-|+.|-+.-.|+ .|+++. ++||.++++++ |...+| +|++-+.+++||+|||
T Consensus 168 ~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN 247 (379)
T PRK13790 168 FDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFN 247 (379)
T ss_pred cccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEE
Confidence 2222221 2366555565333333344 456653 67899999998 545556 5998888889999999
Q ss_pred C
Q psy10158 330 G 330 (1266)
Q Consensus 330 G 330 (1266)
.
T Consensus 248 ~ 248 (379)
T PRK13790 248 A 248 (379)
T ss_pred c
Confidence 6
No 32
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.97 E-value=8e-09 Score=117.49 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=129.5
Q ss_pred ccceeeccccCCCcHH-HHHHHHhhcCCccccCc-cchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 99 IVDCLISFHSKGFPLE-KAIKYANLRKPFVINNL-NMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~-KAi~Y~klrkp~~lNdl-~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.+|++++...-.+=.+ .+..++++.+.+.++.- .+.++.+||..+.++|+++|||+|.+..+.+...... ..+..
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~---~~~~~ 163 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD---KEGIK 163 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc---hHHHH
Confidence 4788877664334343 78899999987666555 6999999999999999999999999877754210000 00000
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC--cccccCcceEEeeccCCCCceEE
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE--SRVRKSGSFIYEDFMPTDGTDVK 254 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~--s~vr~~gSyIYEEFI~t~GtDVK 254 (1266)
+.+ -..+..|+|+||..+- .|.|+. + +.|.. ++..- .....+..+|.||||. |.++.
T Consensus 164 ~~~---~~~lg~PviVKP~~~G-----------sS~Gv~-~---v~~~~-el~~al~~a~~~~~~vlVEefI~--GrEi~ 222 (364)
T PRK14570 164 KDI---KEVLGYPVIVKPAVLG-----------SSIGIN-V---AYNEN-QIEKCIEEAFKYDLTVVIEKFIE--AREIE 222 (364)
T ss_pred HHH---HHhcCCCEEEEeCCCC-----------CCCcEE-E---eCCHH-HHHHHHHHHHhCCCCEEEECCcC--CEEEE
Confidence 111 0124589999999864 245553 2 22211 11110 1123356799999997 89999
Q ss_pred EEEECCceeEE---eeccCCCCCCcee---e--cCC-CCcee--eEeeCCH----HHHHHHHHHHHHhCC-ccceeeEEe
Q psy10158 255 VYTVGPDYAHA---EARKSPALDGKVE---R--DSE-GKEIR--YPVILSN----AEKLISRKVCLAFKQ-TVCGFDLLR 318 (1266)
Q Consensus 255 VYtVGp~~vhA---e~RKSPvvDG~VR---R--N~h-gKEiR--ypV~LT~----eEK~IA~kaakAFGq-~VCGfDLLR 318 (1266)
|-++|+....+ .+..- .++.|- . ..+ |+-.. -|..|++ +=+++|+++++++|. .+|.||++-
T Consensus 223 v~Vlg~~~~~v~~~~Ei~~--~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 223 CSVIGNEQIKIFTPGEIVV--QDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred EEEECCCCceEeeeEEEEe--CCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999753221 11110 011111 1 111 22222 2555664 567889999999999 689999987
Q ss_pred e--CCCeEEEeecC
Q psy10158 319 A--NGKSFVCDVNG 330 (1266)
Q Consensus 319 s--~ggsyVcDVNG 330 (1266)
. +|.+||+|||-
T Consensus 301 ~~~~g~~yvlEiNt 314 (364)
T PRK14570 301 EKDTGLIYLNEINT 314 (364)
T ss_pred ECCCCcEEEEEeeC
Confidence 6 37899999994
No 33
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.92 E-value=1.3e-09 Score=107.98 Aligned_cols=162 Identities=19% Similarity=0.282 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchh
Q psy10158 136 DIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQ 215 (1266)
Q Consensus 136 ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~ 215 (1266)
++.||...++++.+.|||+|++..+..... ..+.+.- +..|+|+||..|. .|.|+.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~---------~~~~~~~----~~~p~vvKp~~g~-----------gs~gv~ 56 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEE---------LRAFAED----LGFPFVVKPVDGS-----------GSRGVF 56 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHH---------HHHHHHH----SSSSEEEEESS-S-----------TTTT-E
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHH---------HHHHHHH----cCCCEEEEcCccc-----------cCCCEE
Confidence 357999999999999999999999864211 1111111 1289999999996 355553
Q ss_pred hhhcccCCccccccCCccc-----ccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCceeecCCC---Ccee
Q psy10158 216 RLFRKIGSRSSVYSPESRV-----RKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEG---KEIR 287 (1266)
Q Consensus 216 ~LfrKignkSS~y~p~s~v-----r~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hg---KEiR 287 (1266)
+++ +.+....--..+ ..++.||.||||+...-.+.+++.+++++.+...+.- .....+. ....
T Consensus 57 -~~~---~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~ 127 (184)
T PF13535_consen 57 -IVH---SPEELEAALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPTG 127 (184)
T ss_dssp -EES---SHHHHHHHHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEEE
T ss_pred -EeC---CHHHHHHHHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceeee
Confidence 333 222111110112 1257899999999545778888888887555544331 1112222 3344
Q ss_pred eEeeCC----HHHHHHHHHHHHHhCC--ccceeeEEeeCCC-eEEEeecC
Q psy10158 288 YPVILS----NAEKLISRKVCLAFKQ--TVCGFDLLRANGK-SFVCDVNG 330 (1266)
Q Consensus 288 ypV~LT----~eEK~IA~kaakAFGq--~VCGfDLLRs~gg-syVcDVNG 330 (1266)
+....+ ++=++.+.++++++|. .++++|++...+| .|++|||.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 128 YSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 444332 5667889999999997 9999999999766 69999995
No 34
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.88 E-value=5.5e-09 Score=117.31 Aligned_cols=194 Identities=21% Similarity=0.276 Sum_probs=120.1
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHH-hcCCCCCCeEEeccCCCCCccccccccCCe
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLE-KEGIEIPRYAVLDRESPDPVKHELVESEDH 178 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~-~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~ 178 (1266)
+|++|+.+.. .+.. ++++++..+..+..+..+..+.+||....+.|. ++|||+|++..++... +....
T Consensus 76 id~vi~~~e~-~~~~-~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~---------~l~~~ 144 (395)
T PRK09288 76 PDYIVPEIEA-IATD-ALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLE---------ELRAA 144 (395)
T ss_pred CCEEEEeeCc-CCHH-HHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHH---------HHHHH
Confidence 7888876554 3333 344444455555678888899999999999985 7899999999886411 11111
Q ss_pred EEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCccc----c-cCcceEEeeccCCCCceE
Q psy10158 179 VEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRV----R-KSGSFIYEDFMPTDGTDV 253 (1266)
Q Consensus 179 I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~v----r-~~gSyIYEEFI~t~GtDV 253 (1266)
+. .+..|+|+||.+|. .|.|+. +.+ +....-..-... + ....+|.||||+ .|..+
T Consensus 145 ~~----~~g~P~VvKP~~g~-----------~s~Gv~-~v~---~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~ 204 (395)
T PRK09288 145 VE----EIGYPCVVKPVMSS-----------SGKGQS-VVR---SPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEI 204 (395)
T ss_pred HH----hcCCCEEEEeCCCc-----------CCCCeE-EEC---CHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEE
Confidence 11 23489999999886 356664 333 222110000011 1 136799999997 35677
Q ss_pred EEEEECC---ceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHH----HHHHHHHHHhCC-ccceeeEEeeCCCeEE
Q psy10158 254 KVYTVGP---DYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEK----LISRKVCLAFKQ-TVCGFDLLRANGKSFV 325 (1266)
Q Consensus 254 KVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK----~IA~kaakAFGq-~VCGfDLLRs~ggsyV 325 (1266)
-|.++.. ...... | . +.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|+.-.++++||
T Consensus 205 sv~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~v 278 (395)
T PRK09288 205 TLLTVRAVDGGTHFCA----P-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYF 278 (395)
T ss_pred EEEEEEcCCCCEEEec----C-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEE
Confidence 7776632 222221 1 1 22222211123345777887654 488999999984 4567899988889999
Q ss_pred EeecC
Q psy10158 326 CDVNG 330 (1266)
Q Consensus 326 cDVNG 330 (1266)
+|+|.
T Consensus 279 iEinp 283 (395)
T PRK09288 279 SEVSP 283 (395)
T ss_pred EEecC
Confidence 99993
No 35
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.87 E-value=1.1e-08 Score=114.31 Aligned_cols=193 Identities=18% Similarity=0.296 Sum_probs=117.1
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV 179 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I 179 (1266)
||++ .+-....|. .++++++..+..+.++.....+.+||....++|+++|||+|++..+.... +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE---------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH---------HHHHHH
Confidence 5543 322233343 34566666655677999999999999999999999999999999986411 111111
Q ss_pred EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cccccCcceEEeeccCCCCceEEEEEE
Q psy10158 180 EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRVRKSGSFIYEDFMPTDGTDVKVYTV 258 (1266)
Q Consensus 180 ~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~vr~~gSyIYEEFI~t~GtDVKVYtV 258 (1266)
. .+..|+|+||.+|. +.|.|+. +.+ +.. ++..- ..+ .+..+|.||||+ .|..+-|.++
T Consensus 130 ~----~~g~P~vvKp~~~g----------~~g~Gv~-~v~---~~~-el~~a~~~~-~~~~~lvEe~I~-~~~E~sv~~~ 188 (352)
T TIGR01161 130 Q----ELGFPVVLKARTGG----------YDGRGQY-RIR---NEA-DLPQAAKEL-GDRECIVEEFVP-FERELSVIVA 188 (352)
T ss_pred H----HcCCCEEEEeCCCC----------CCCCCEE-EEC---CHH-HHHHHHHhc-CCCcEEEEecCC-CCeEEEEEEE
Confidence 1 13489999999863 0255653 322 211 11100 011 244899999997 3567777665
Q ss_pred C---CceeEEeeccCCCCCCceeecCCCCceeeEeeCCHH----HHHHHHHHHHHhCCc-cceeeEEeeC-CCeEEEeec
Q psy10158 259 G---PDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNA----EKLISRKVCLAFKQT-VCGFDLLRAN-GKSFVCDVN 329 (1266)
Q Consensus 259 G---p~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~e----EK~IA~kaakAFGq~-VCGfDLLRs~-ggsyVcDVN 329 (1266)
. ++++. -|+..- +.++-.......|..++++ =+++|.+++++||.. +++||++... |.+||+|||
T Consensus 189 ~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~Ein 262 (352)
T TIGR01161 189 RSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELA 262 (352)
T ss_pred EcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEec
Confidence 2 23221 122221 1121101112234556543 367899999999984 8999999875 459999999
Q ss_pred C
Q psy10158 330 G 330 (1266)
Q Consensus 330 G 330 (1266)
-
T Consensus 263 p 263 (352)
T TIGR01161 263 P 263 (352)
T ss_pred C
Confidence 4
No 36
>PRK07206 hypothetical protein; Provisional
Probab=98.84 E-value=8.6e-09 Score=116.71 Aligned_cols=200 Identities=13% Similarity=0.159 Sum_probs=116.4
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV 179 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I 179 (1266)
.|++|+..-.+.++. -...+...+...|+...-...+||.+..+.|+++|||+|++..+.... +..+.+
T Consensus 71 ~d~vi~~~e~~~~~~--a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVELA--DRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHHH--HHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHHH
Confidence 588888644334432 222333455557888888889999999999999999999999885311 111222
Q ss_pred EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC-------Cccc-ccCcceEEeeccCCCCc
Q psy10158 180 EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-------ESRV-RKSGSFIYEDFMPTDGT 251 (1266)
Q Consensus 180 ~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p-------~s~v-r~~gSyIYEEFI~t~Gt 251 (1266)
.-.| -+..|+|+||++|. .|.|+. +.+ |....... .... ..+..+|.||||+-.--
T Consensus 140 ~~~g-~~~~P~VvKP~~g~-----------gs~gv~-~v~---~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~ 203 (416)
T PRK07206 140 RENG-LIDRPVVIKPLESA-----------GSDGVF-ICP---AKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEY 203 (416)
T ss_pred HhcC-CCCCCEEEeCCCCC-----------CCCCEE-EeC---CHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEE
Confidence 1112 01249999999986 234442 222 21110000 0001 12468999999974335
Q ss_pred eEEEEEECCceeE-Eeec--cCCCCCCceeecCCCCceeeEe--eCCHHHHHHHHHHHHHhCC--ccceeeEEeeCCCeE
Q psy10158 252 DVKVYTVGPDYAH-AEAR--KSPALDGKVERDSEGKEIRYPV--ILSNAEKLISRKVCLAFKQ--TVCGFDLLRANGKSF 324 (1266)
Q Consensus 252 DVKVYtVGp~~vh-Ae~R--KSPvvDG~VRRN~hgKEiRypV--~LT~eEK~IA~kaakAFGq--~VCGfDLLRs~ggsy 324 (1266)
.|-+++.+++... +..+ +.+..+|.+.... .. ..|. ...++=+++|.++++++|. .++.+|+....++++
T Consensus 204 sv~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~ 280 (416)
T PRK07206 204 VVNFVSLDGNHLVTEIVRYHKTSLNSGSTVYDY--DE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPR 280 (416)
T ss_pred EEEEEEECCEEEEEEeEEeeecccCCCCceecc--cc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCE
Confidence 5666766666433 2232 2222233221110 00 0111 1112234568899999998 578899999999999
Q ss_pred EEeec
Q psy10158 325 VCDVN 329 (1266)
Q Consensus 325 VcDVN 329 (1266)
|+|||
T Consensus 281 liEin 285 (416)
T PRK07206 281 LIEIG 285 (416)
T ss_pred EEEEC
Confidence 99999
No 37
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.83 E-value=3.8e-09 Score=118.36 Aligned_cols=258 Identities=22% Similarity=0.356 Sum_probs=147.7
Q ss_pred CCeEEEEEEecCCccCChhHHHHHHHHhhcCcEEEEEecccccccccccccccceeeccccCCCcHHHHHHHHhhc-CCc
Q psy10158 48 GKQVIVGVCAMAKKSQSKPMKEILTRLEEFEFIKMIVFSEETIQKPVDEWPIVDCLISFHSKGFPLEKAIKYANLR-KPF 126 (1266)
Q Consensus 48 ~~~i~iGVCAMd~Ka~SkPMr~IL~RL~~~g~f~viiF~dkvILe~vE~WP~cD~LIsFfS~GfPL~KAi~Y~klr-kp~ 126 (1266)
.+..+||.|--.||.++==-+..+ -+.+...+++|=-.-. .|+++=--.||+|==..+.--..+..+|.+.+ ...
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~-~~~~~~gi~~v~id~~---~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~ 80 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFI-DLARSRGIDFVPIDLS---KPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVV 80 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHC-CCCCCCTTEEEEEECC---SSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSE
T ss_pred ccceEEEEEECHHHHHHhhHHHHH-HHHHhcCCEEEEcCCC---CCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeE
Confidence 367899988888886543222222 2333345555433211 45554434899998777632236778888875 457
Q ss_pred cccCccchhhhhHHHHHHHHHHhc-------CCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccc--
Q psy10158 127 VINNLNMQYDIQDRRKVYALLEKE-------GIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSA-- 197 (1266)
Q Consensus 127 ~lNdl~~Q~ilrDRr~vlqiL~~~-------gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~G-- 197 (1266)
+|..+.++..|.||...|++|++. +|.+|+.+++..+.. . ..+.+.-.| +.-|+|.||+-+
T Consensus 81 viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~--~------~~~~l~~ag--L~fPlI~KPlvA~G 150 (307)
T PF05770_consen 81 VIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAE--S------LPELLKEAG--LKFPLICKPLVACG 150 (307)
T ss_dssp EET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHC--C------HHHHHHCTT--S-SSEEEEESB-SS
T ss_pred EEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHH--H------HHHHHHHCC--CcccEEeeehhhcC
Confidence 778889999999999999998874 789999999975311 0 111122233 789999999985
Q ss_pred --cCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccC-CCC-
Q psy10158 198 --EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKS-PAL- 273 (1266)
Q Consensus 198 --edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKS-Pvv- 273 (1266)
+-|...|=|.. .|-. ..+...+.||||.-+|.=-||||||+.+.. ..|+| |-+
T Consensus 151 sa~SH~Maivf~~---~gL~-------------------~L~~P~VlQeFVNHggvLfKVyVvGd~v~~-v~R~SLpn~~ 207 (307)
T PF05770_consen 151 SADSHKMAIVFNE---EGLK-------------------DLKPPCVLQEFVNHGGVLFKVYVVGDKVFV-VKRPSLPNVS 207 (307)
T ss_dssp TSCCCEEEEE-SG---GGGT-------------------T--SSEEEEE----TTEEEEEEEETTEEEE-EEEE------
T ss_pred CccceEEEEEECH---HHHh-------------------hcCCCEEEEEeecCCCEEEEEEEecCEEEE-EECCCCCCCC
Confidence 34666665532 1221 123456999999999999999999987555 56665 322
Q ss_pred CCce-------e----ecCCCCce-------eeEeeCCH--HHHHHHHHHHHHhCCccceeeEEeeC---CCeEEEeecC
Q psy10158 274 DGKV-------E----RDSEGKEI-------RYPVILSN--AEKLISRKVCLAFKQTVCGFDLLRAN---GKSFVCDVNG 330 (1266)
Q Consensus 274 DG~V-------R----RN~hgKEi-------RypV~LT~--eEK~IA~kaakAFGq~VCGfDLLRs~---ggsyVcDVNG 330 (1266)
.|+. . ++.+-... ...+.+.+ .=+++|..+-++||++..|||++|-+ |+-||+|||=
T Consensus 208 ~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINy 287 (307)
T PF05770_consen 208 SGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINY 287 (307)
T ss_dssp SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEE
T ss_pred cccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEecc
Confidence 1211 1 11111000 01122222 22679999999999999999999974 4599999998
Q ss_pred c-eecccCchhhHH
Q psy10158 331 F-SFVKNSNKYYDD 343 (1266)
Q Consensus 331 w-SFVK~n~kYYDd 343 (1266)
| || |+-..|+..
T Consensus 288 FPgY-~~vp~f~~~ 300 (307)
T PF05770_consen 288 FPGY-KKVPDFESV 300 (307)
T ss_dssp S--T-TTSCTHHHH
T ss_pred CCCc-cCCCChHHH
Confidence 8 54 445556554
No 38
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.83 E-value=1.3e-08 Score=116.32 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=114.3
Q ss_pred HHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEe
Q psy10158 115 KAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEK 193 (1266)
Q Consensus 115 KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeK 193 (1266)
....+++..+ |+.-++...-.+.+||....++|+++|||+|++..+.... +..+++. .+..|+|+|
T Consensus 77 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~~~----~~~~P~VvK 143 (420)
T PRK00885 77 GIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAE---------EALAYLD----EKGAPIVVK 143 (420)
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHH---------HHHHHHH----HcCCCEEEE
Confidence 3344555555 4445677778889999999999999999999998875311 1112221 134899999
Q ss_pred cccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cccc-ccCcceEEeeccCCCCceEEEEEECCceeE-Eeec
Q psy10158 194 PVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ESRV-RKSGSFIYEDFMPTDGTDVKVYTVGPDYAH-AEAR 268 (1266)
Q Consensus 194 pv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s~v-r~~gSyIYEEFI~t~GtDVKVYtVGp~~vh-Ae~R 268 (1266)
|..|. .|.|+. +.+........+.. .... +.++.+|+||||+-.--.|-+++-|..+.. ...|
T Consensus 144 P~~~~-----------gs~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~ 211 (420)
T PRK00885 144 ADGLA-----------AGKGVV-VAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDGEEASFFAFVDGENVLPLPTAQ 211 (420)
T ss_pred eCCCC-----------CCCcEE-EeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCCcEEEEEEEECCCceEeceeeE
Confidence 99886 355653 33321100000000 0000 134679999999732244444544444322 2222
Q ss_pred c-CCCCCCceeecCCCCceeeEee-CCHHHH-----HHHHHHHHHhC---C---ccceeeEEeeCCCeEEEeecC
Q psy10158 269 K-SPALDGKVERDSEGKEIRYPVI-LSNAEK-----LISRKVCLAFK---Q---TVCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 269 K-SPvvDG~VRRN~hgKEiRypV~-LT~eEK-----~IA~kaakAFG---q---~VCGfDLLRs~ggsyVcDVNG 330 (1266)
. -...+|...-|+.|-+.-.|.. |+++.. +|+.++.++++ + .++.+|+..+.+++||+|+|.
T Consensus 212 ~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g~~viEin~ 286 (420)
T PRK00885 212 DHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNA 286 (420)
T ss_pred eeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCCcEEEEEec
Confidence 1 1124666656666655656664 776533 36667777654 3 567789999999999999994
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.79 E-value=1.3e-08 Score=129.15 Aligned_cols=195 Identities=18% Similarity=0.225 Sum_probs=128.5
Q ss_pred ccceeeccccCCCcHHHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCC
Q psy10158 99 IVDCLISFHSKGFPLEKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESED 177 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D 177 (1266)
..|.+|+.++.-.++ .....++..+ |++-|+..+..+++||.+..++|+++|||+|++..+.... +..+
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~e---------e~~~ 698 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVE---------EALE 698 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHH---------HHHH
Confidence 358899988876666 4445555556 4455888999999999999999999999999999885311 1111
Q ss_pred eEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---C-cccccCcceEEeeccCCC-Cce
Q psy10158 178 HVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---E-SRVRKSGSFIYEDFMPTD-GTD 252 (1266)
Q Consensus 178 ~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~-s~vr~~gSyIYEEFI~t~-GtD 252 (1266)
.+. .+..|+|+||..|. .|.|+. ++. |.. ++.. . .....+..+|.||||+-. .-+
T Consensus 699 ~~~----~igyPvvVKP~~~~-----------Gg~Gv~-iv~---~~e-eL~~~~~~a~~~s~~~~vlIEefI~G~~E~s 758 (1066)
T PRK05294 699 VAE----EIGYPVLVRPSYVL-----------GGRAME-IVY---DEE-ELERYMREAVKVSPDHPVLIDKFLEGAIEVD 758 (1066)
T ss_pred HHH----hcCCCeEEEeCCCC-----------CCCcEE-EEC---CHH-HHHHHHHHHHhhCCCCcEEEEecCCCCEEEE
Confidence 221 23489999999886 345553 332 111 1110 0 011246779999999754 568
Q ss_pred EEEEEECCce-eEE-eeccCCCCCCceeecCCCCceee---EeeCCHHH----HHHHHHHHHHhCC-ccceeeEEeeCCC
Q psy10158 253 VKVYTVGPDY-AHA-EARKSPALDGKVERDSEGKEIRY---PVILSNAE----KLISRKVCLAFKQ-TVCGFDLLRANGK 322 (1266)
Q Consensus 253 VKVYtVGp~~-vhA-e~RKSPvvDG~VRRN~hgKEiRy---pV~LT~eE----K~IA~kaakAFGq-~VCGfDLLRs~gg 322 (1266)
|-|+.-|..+ +.+ +.+.. +...|.|+... +..|++++ +++|.++++++|. .+++||++..+++
T Consensus 759 V~~v~dg~~v~i~~i~e~i~-------~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~ 831 (1066)
T PRK05294 759 VDAICDGEDVLIGGIMEHIE-------EAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDE 831 (1066)
T ss_pred EEEEecCCeEEEeeeEEeee-------eccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCe
Confidence 8887766532 222 23222 12345555433 34677643 4578889999998 4566999999999
Q ss_pred eEEEeecC
Q psy10158 323 SFVCDVNG 330 (1266)
Q Consensus 323 syVcDVNG 330 (1266)
+||+|||.
T Consensus 832 ~yViEiNp 839 (1066)
T PRK05294 832 VYVIEVNP 839 (1066)
T ss_pred EEEEEEec
Confidence 99999994
No 40
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.77 E-value=1.2e-08 Score=103.27 Aligned_cols=146 Identities=22% Similarity=0.347 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhh
Q psy10158 138 QDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRL 217 (1266)
Q Consensus 138 rDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~L 217 (1266)
.||++.++.|+++|||+|.++....... ...|+|+||.+|. -|.|. +.
T Consensus 2 ~dK~~~~~~L~~~gi~~P~~~~~~~~~~--------------------~~~~~viKp~~G~-----------Gg~~i-~~ 49 (161)
T PF02655_consen 2 SDKLKTYKFLKELGIPVPTTLRDSEPEP--------------------IDGPWVIKPRDGA-----------GGEGI-RI 49 (161)
T ss_dssp TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS-------------------B-
T ss_pred CCHHHHHHHHHccCCCCCCccccccccc--------------------cCCcEEEEeCCCC-----------CCCCe-EE
Confidence 5899999999999999995554432111 1489999999997 24444 34
Q ss_pred hcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCc---eeEEeeccCCCC-CCceeecCCCCceeeEee--
Q psy10158 218 FRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPD---YAHAEARKSPAL-DGKVERDSEGKEIRYPVI-- 291 (1266)
Q Consensus 218 frKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~---~vhAe~RKSPvv-DG~VRRN~hgKEiRypV~-- 291 (1266)
++.-. +.. ..+ ....|+||||+ |+-.-+.++... .+-+..|+-=.. ++.|+ .+|++ .+..
T Consensus 50 ~~~~~----~~~--~~~--~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~-~~~~~~ 115 (161)
T PF02655_consen 50 VDSED----ELE--EFL--NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGI-VPADTP 115 (161)
T ss_dssp -SS------TTE-----------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEE-ES----
T ss_pred ECCch----hhc--ccc--ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccc-cccCCc
Confidence 44211 000 011 11129999997 555555444322 333444443100 11122 12222 2333
Q ss_pred CCHHHHHHHHHHHHHh-CC-ccceeeEEeeCCCeEEEeec
Q psy10158 292 LSNAEKLISRKVCLAF-KQ-TVCGFDLLRANGKSFVCDVN 329 (1266)
Q Consensus 292 LT~eEK~IA~kaakAF-Gq-~VCGfDLLRs~ggsyVcDVN 329 (1266)
+.++=.++|.+++++| |+ -.+|||++...+++||+|||
T Consensus 116 ~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 116 LKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 3445567889999999 76 58999999999999999999
No 41
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.76 E-value=2.7e-08 Score=124.24 Aligned_cols=204 Identities=17% Similarity=0.156 Sum_probs=130.3
Q ss_pred cccccccccceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCcccc
Q psy10158 92 KPVDEWPIVDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHE 171 (1266)
Q Consensus 92 e~vE~WP~cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~ 171 (1266)
+-+..+...|+++++.- +.+.-|...++..+.+ -|+..+-.+.+||.+..+.|+++|||+|++..++...
T Consensus 63 ~~~~~~~~i~~V~~~se--~~v~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~------- 132 (887)
T PRK02186 63 RFVSSLDGVAGIMSSSE--YFIEVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA------- 132 (887)
T ss_pred HHHHhcCCCCEEEeCch--hhHHHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH-------
Confidence 66677777899998733 3333333334433433 3678888899999999999999999999999886421
Q ss_pred ccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccc--cCcceEEeeccCCC
Q psy10158 172 LVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVR--KSGSFIYEDFMPTD 249 (1266)
Q Consensus 172 l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr--~~gSyIYEEFI~t~ 249 (1266)
+..+.+. .+..|+|+||++|. .|.|+. +.+ |.......-..+. ..+.||.||||+-.
T Consensus 133 --e~~~~~~----~~~~PvVVKP~~g~-----------gS~GV~-~v~---~~~el~~a~~~~~~~~~~~~lvEEfI~G~ 191 (887)
T PRK02186 133 --VALDALD----GLTYPVVVKPRMGS-----------GSVGVR-LCA---SVAEAAAHCAALRRAGTRAALVQAYVEGD 191 (887)
T ss_pred --HHHHHHH----hCCCCEEEEeCCCC-----------CCCCeE-EEC---CHHHHHHHHHHHHhcCCCcEEEeecccCC
Confidence 1112221 23489999999996 345553 322 2211100000111 36789999999854
Q ss_pred CceEEEEEECCc-eeEEeeccCCCCCCceeecCCCCceeeEeeCCHHH----HHHHHHHHHHhCC--ccceeeEEeeCCC
Q psy10158 250 GTDVKVYTVGPD-YAHAEARKSPALDGKVERDSEGKEIRYPVILSNAE----KLISRKVCLAFKQ--TVCGFDLLRANGK 322 (1266)
Q Consensus 250 GtDVKVYtVGp~-~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eE----K~IA~kaakAFGq--~VCGfDLLRs~gg 322 (1266)
--.|-+++.++. ++.+..++.......|.-. +.-+|..|++++ .+++.++++++|. .++++|+...+++
T Consensus 192 E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g 267 (887)
T PRK02186 192 EYSVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT 267 (887)
T ss_pred cEEEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC
Confidence 466777776543 4555555542111112111 123567777644 4678999999998 5688999999999
Q ss_pred eEEEeecC
Q psy10158 323 SFVCDVNG 330 (1266)
Q Consensus 323 syVcDVNG 330 (1266)
+||||||.
T Consensus 268 ~~liEIn~ 275 (887)
T PRK02186 268 VVIIEINP 275 (887)
T ss_pred EEEEEECC
Confidence 99999995
No 42
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.74 E-value=3e-08 Score=116.05 Aligned_cols=201 Identities=17% Similarity=0.203 Sum_probs=120.9
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCe-EEeccCCCCCccccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRY-AVLDRESPDPVKHELVE 174 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~t-v~~~rd~~~~~~~~l~e 174 (1266)
.+|++++.| ||-. ....+.++..+ +|+-++.....+++||....++|+++|||+|.. ....... ..+
T Consensus 73 ~iDaI~pg~--g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~-------~~~ 143 (478)
T PRK08463 73 GADAIHPGY--GFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES-------MEE 143 (478)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCC-------HHH
Confidence 378888876 4422 22444555555 445588899999999999999999999999774 3332110 001
Q ss_pred cCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---C-cccccCcceEEeeccCCCC
Q psy10158 175 SEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---E-SRVRKSGSFIYEDFMPTDG 250 (1266)
Q Consensus 175 ~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~-s~vr~~gSyIYEEFI~t~G 250 (1266)
..+.+. .+..|+|+||.+|. -|.|++ +.+....-...+.- + ...-.++.++.|+||.. +
T Consensus 144 ~~~~~~----~igyPvvvKP~~gg-----------Gg~Gv~-iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~-~ 206 (478)
T PRK08463 144 IKIFAR----KIGYPVILKASGGG-----------GGRGIR-VVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN-P 206 (478)
T ss_pred HHHHHH----HhCCCEEEEeCCCC-----------CCCceE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-C
Confidence 111121 23489999999986 245553 22211100000000 0 00113578999999974 5
Q ss_pred ceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCceeeEe-eCCHHHH----HHHHHHHHHhCCccce-eeEEee-C
Q psy10158 251 TDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEIRYPV-ILSNAEK----LISRKVCLAFKQTVCG-FDLLRA-N 320 (1266)
Q Consensus 251 tDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRypV-~LT~eEK----~IA~kaakAFGq~VCG-fDLLRs-~ 320 (1266)
..+-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| ||++.. +
T Consensus 207 ~~iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~ 281 (478)
T PRK08463 207 RHIEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY 281 (478)
T ss_pred eEEEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC
Confidence 6666655554 466666665421 12221111221 22 4777666 4889999999987666 999987 4
Q ss_pred CCeEEEeecC
Q psy10158 321 GKSFVCDVNG 330 (1266)
Q Consensus 321 ggsyVcDVNG 330 (1266)
|++||||||.
T Consensus 282 ~~~y~iEiN~ 291 (478)
T PRK08463 282 NRFYFMEMNT 291 (478)
T ss_pred CCEEEEEEEC
Confidence 8899999994
No 43
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.73 E-value=2.6e-08 Score=126.37 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=126.0
Q ss_pred ccceeeccccCCCcHHHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCC
Q psy10158 99 IVDCLISFHSKGFPLEKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESED 177 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D 177 (1266)
.+|.+|+.++.-.++ .+...++..+ |+.-|+......++||.+..++|+++|||+|++..+... .+..+
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~---------ee~~~ 698 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV---------EEAVE 698 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH---------HHHHH
Confidence 478999888654443 2223333344 445589999999999999999999999999999988641 11111
Q ss_pred eEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCcccccc--CCc-ccccCcceEEeeccCC-CCceE
Q psy10158 178 HVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYS--PES-RVRKSGSFIYEDFMPT-DGTDV 253 (1266)
Q Consensus 178 ~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~--p~s-~vr~~gSyIYEEFI~t-~GtDV 253 (1266)
.+. .+..|+|+||..|. .|.|+. + +.|....-. .+. ....++.+|.||||+. ..-+|
T Consensus 699 ~~~----~igyPvIVKP~~~~-----------Gg~gv~-i---v~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~V 759 (1050)
T TIGR01369 699 FAS----EIGYPVLVRPSYVL-----------GGRAME-I---VYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDV 759 (1050)
T ss_pred HHH----hcCCCEEEEECCCC-----------CCCCeE-E---ECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEE
Confidence 221 13489999999875 244443 2 211111000 000 1224667999999973 34678
Q ss_pred EEEEECCceeEEe-eccCCCCCCceeecCCCCceee--Ee-eCCHH----HHHHHHHHHHHhCC-ccceeeEEeeCCCeE
Q psy10158 254 KVYTVGPDYAHAE-ARKSPALDGKVERDSEGKEIRY--PV-ILSNA----EKLISRKVCLAFKQ-TVCGFDLLRANGKSF 324 (1266)
Q Consensus 254 KVYtVGp~~vhAe-~RKSPvvDG~VRRN~hgKEiRy--pV-~LT~e----EK~IA~kaakAFGq-~VCGfDLLRs~ggsy 324 (1266)
-++..|++++... ..+ ..+.+.|.|.... |. .|+++ =+++|.+++++||. .++.||++...|++|
T Consensus 760 d~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~y 833 (1050)
T TIGR01369 760 DAVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVY 833 (1050)
T ss_pred EEEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEE
Confidence 8888887665432 111 1133456565443 32 57764 35678999999985 344589999999999
Q ss_pred EEeecC
Q psy10158 325 VCDVNG 330 (1266)
Q Consensus 325 VcDVNG 330 (1266)
|+|||.
T Consensus 834 vIEvNp 839 (1050)
T TIGR01369 834 VIEVNP 839 (1050)
T ss_pred EEEEeC
Confidence 999995
No 44
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.71 E-value=7.2e-08 Score=109.19 Aligned_cols=191 Identities=21% Similarity=0.264 Sum_probs=117.4
Q ss_pred ccceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCe
Q psy10158 99 IVDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDH 178 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~ 178 (1266)
.||++. |-....| ..++++++.. ..+.++.....+.+||...-+.|+++|||+|++..+.... +..+.
T Consensus 63 ~~dvit-~e~e~i~-~~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~---------~l~~~ 130 (372)
T PRK06019 63 QCDVIT-YEFENVP-AEALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAE---------DLEAA 130 (372)
T ss_pred cCCEEE-eCcCCCC-HHHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 566643 3233344 3556666555 5577999999999999999999999999999999886411 11111
Q ss_pred EEEcCeEecCCEEEecccc-cCcceEEEeccCCCCchhhhhcccCCccccccCCc-ccccCcceEEeeccCCCCceEEEE
Q psy10158 179 VEVNGIVFNKPFVEKPVSA-EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPES-RVRKSGSFIYEDFMPTDGTDVKVY 256 (1266)
Q Consensus 179 I~v~G~~~~kPfVeKpv~G-edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s-~vr~~gSyIYEEFI~t~GtDVKVY 256 (1266)
+. .+..|+|+||..| .+ |.|+. ..+ +.. ++..-. .+ ....+|+||||+- |..+-|.
T Consensus 131 ~~----~~g~P~vlKp~~~g~~-----------g~Gv~-~v~---~~~-el~~a~~~~-~~~~~ivEe~I~~-~~E~sv~ 188 (372)
T PRK06019 131 LA----DLGLPAVLKTRRGGYD-----------GKGQW-VIR---SAE-DLEAAWALL-GSVPCILEEFVPF-EREVSVI 188 (372)
T ss_pred HH----HcCCcEEEEeCCCCcC-----------CCCeE-EEC---CHH-HHHHHHHhc-CCCCEEEEecCCC-CeEEEEE
Confidence 11 1348999999985 32 55654 222 211 111000 11 2468999999984 5667776
Q ss_pred EECCceeEEeeccCCCCCCceeecCCCCce----eeEeeCCH----HHHHHHHHHHHHhCCc-cceeeEEeeC-CCeEEE
Q psy10158 257 TVGPDYAHAEARKSPALDGKVERDSEGKEI----RYPVILSN----AEKLISRKVCLAFKQT-VCGFDLLRAN-GKSFVC 326 (1266)
Q Consensus 257 tVGp~~vhAe~RKSPvvDG~VRRN~hgKEi----RypV~LT~----eEK~IA~kaakAFGq~-VCGfDLLRs~-ggsyVc 326 (1266)
+++.. .-+.+--|+. .|.|..++ ..|..+++ +=+++|.+++++||.. |++||+.... |.+||+
T Consensus 189 ~~~~~--~G~~~~~p~~-----e~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~ 261 (372)
T PRK06019 189 VARGR--DGEVVFYPLV-----ENVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVN 261 (372)
T ss_pred EEECC--CCCEEEeCCc-----ccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEE
Confidence 65421 0011112221 12222222 23444554 4457889999999975 7889999985 459999
Q ss_pred eecC
Q psy10158 327 DVNG 330 (1266)
Q Consensus 327 DVNG 330 (1266)
|+|-
T Consensus 262 Einp 265 (372)
T PRK06019 262 EIAP 265 (372)
T ss_pred EecC
Confidence 9994
No 45
>PRK05586 biotin carboxylase; Validated
Probab=98.71 E-value=4.5e-08 Score=113.11 Aligned_cols=196 Identities=15% Similarity=0.235 Sum_probs=118.7
Q ss_pred cccceeeccccCCCcHH-HHHH-HHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEE--eccCCCCCccccc
Q psy10158 98 PIVDCLISFHSKGFPLE-KAIK-YANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAV--LDRESPDPVKHEL 172 (1266)
Q Consensus 98 P~cD~LIsFfS~GfPL~-KAi~-Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~--~~rd~~~~~~~~l 172 (1266)
..||+++|-| ||-.+ ..++ .++..+ ||+..+.....+++||.+..++|+++|||+|++.. +.. .
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~-~-------- 141 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN-E-------- 141 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC-H--------
Confidence 4688888754 33321 2222 334344 56788999999999999999999999999998743 321 0
Q ss_pred cccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC--C--cc---cccCcceEEeec
Q psy10158 173 VESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP--E--SR---VRKSGSFIYEDF 245 (1266)
Q Consensus 173 ~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p--~--s~---vr~~gSyIYEEF 245 (1266)
.+....+. .+..|+|+||++|. .|.|++ +.+ +....-.. . .. .-.++.+|.|||
T Consensus 142 ~e~~~~~~----~igyPvvvKP~~gg-----------gg~Gv~-~v~---~~~el~~a~~~~~~~~~~~~~~~~vivEe~ 202 (447)
T PRK05586 142 EEALEIAK----EIGYPVMVKASAGG-----------GGRGIR-IVR---SEEELIKAFNTAKSEAKAAFGDDSMYIEKF 202 (447)
T ss_pred HHHHHHHH----HcCCCEEEEECCCC-----------CCCeeE-EEC---CHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 00111111 23589999999986 355664 222 22211000 0 00 001567999999
Q ss_pred cCCCCceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCceee-E-eeCCHHH----HHHHHHHHHHhCCccce-ee
Q psy10158 246 MPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEIRY-P-VILSNAE----KLISRKVCLAFKQTVCG-FD 315 (1266)
Q Consensus 246 I~t~GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRy-p-V~LT~eE----K~IA~kaakAFGq~VCG-fD 315 (1266)
|.- ++.+-|.+++. ++++.-.|... ..+++ ++-+.. | ..|+++. +++|.++++++|..-++ ||
T Consensus 203 i~g-~~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~--~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vE 275 (447)
T PRK05586 203 IEN-PKHIEFQILGDNYGNVVHLGERDCS----LQRRN--QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIE 275 (447)
T ss_pred CCC-CeEEEEEEEECCCCCEEEEeceecc----eEecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 963 36788877763 55555444321 12222 122221 2 2467643 46799999999976555 99
Q ss_pred EEee-CCCeEEEeecC
Q psy10158 316 LLRA-NGKSFVCDVNG 330 (1266)
Q Consensus 316 LLRs-~ggsyVcDVNG 330 (1266)
++.. +|..||||||.
T Consensus 276 f~~~~~g~~~~iEvNp 291 (447)
T PRK05586 276 FLLDKDGNFYFMEMNT 291 (447)
T ss_pred EEEcCCCCEEEEEEEC
Confidence 9986 56689999994
No 46
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.70 E-value=4e-08 Score=108.70 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=123.1
Q ss_pred cCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCC-CCCc-cccccccCCeEEEcCeEecCCEEEecccccCcceEEEe
Q psy10158 129 NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRES-PDPV-KHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYY 206 (1266)
Q Consensus 129 Ndl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~-~~~~-~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYy 206 (1266)
|+-..-.++.||....+++.+.|||+|+.++..... .... .....+...++.-. -..+||+||..|.
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~viKP~~G~-------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH---APDRFVIKPANGS-------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc---cCCcEEEEeCCCC--------
Confidence 888888899999999999999999999955522110 0000 01111111222111 1278999999998
Q ss_pred ccCCCCchhhhhcccCCccccccCC-----cccccCc--ceEEeeccCC---------CC-ceEEEEEE----CCceeEE
Q psy10158 207 PTSAGGGSQRLFRKIGSRSSVYSPE-----SRVRKSG--SFIYEDFMPT---------DG-TDVKVYTV----GPDYAHA 265 (1266)
Q Consensus 207 p~s~GgGv~~LfrKignkSS~y~p~-----s~vr~~g--SyIYEEFI~t---------~G-tDVKVYtV----Gp~~vhA 265 (1266)
.|.|+. ++...+. ..+... ......+ .||+||||.- .+ -+|||.|+ ++.++.|
T Consensus 85 ---~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a 158 (285)
T PF14397_consen 85 ---GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMA 158 (285)
T ss_pred ---CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEE
Confidence 577774 3333221 111111 0111222 9999999973 23 79999999 3467899
Q ss_pred eeccCCCCCCceeecCCCCceeeEeeCC----------------------------------HHHHHHHHHHHHHh-CCc
Q psy10158 266 EARKSPALDGKVERDSEGKEIRYPVILS----------------------------------NAEKLISRKVCLAF-KQT 310 (1266)
Q Consensus 266 e~RKSPvvDG~VRRN~hgKEiRypV~LT----------------------------------~eEK~IA~kaakAF-Gq~ 310 (1266)
+.|-+ ..|...-|.|.|++...|.+. ++=.++|.++++.| ++.
T Consensus 159 ~lRlg--~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~ 236 (285)
T PF14397_consen 159 MLRLG--RGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLG 236 (285)
T ss_pred EEEeC--CCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCC
Confidence 99999 467777888888776655432 23356788888877 579
Q ss_pred cceeeEEeeCCCeEEEeecCc
Q psy10158 311 VCGFDLLRANGKSFVCDVNGF 331 (1266)
Q Consensus 311 VCGfDLLRs~ggsyVcDVNGw 331 (1266)
+.|+|+.=+..||+|+|.|.+
T Consensus 237 ~iGWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 237 YIGWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred eEEEEEEEcCCCcEEEEeeCC
Confidence 999999999878999999976
No 47
>PRK08462 biotin carboxylase; Validated
Probab=98.70 E-value=1.9e-08 Score=115.68 Aligned_cols=198 Identities=17% Similarity=0.248 Sum_probs=118.2
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEE--eccCCCCCcccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAV--LDRESPDPVKHELV 173 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~--~~rd~~~~~~~~l~ 173 (1266)
.+|++|+-+ ||-- ....+.++..+ |++-++..+..+++||....++|+++|||+|.+.. +.. ..
T Consensus 76 ~~D~i~pg~--g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~---------~~ 144 (445)
T PRK08462 76 EADAIFPGY--GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS---------YE 144 (445)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC---------HH
Confidence 378888876 3421 23334566666 46779999999999999999999999999988653 211 00
Q ss_pred ccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---C-cccccCcceEEeeccCCC
Q psy10158 174 ESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---E-SRVRKSGSFIYEDFMPTD 249 (1266)
Q Consensus 174 e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~-s~vr~~gSyIYEEFI~t~ 249 (1266)
+..+.+ ..+..|+|+||.+|. .|.|++ +.+....-...|.- + .....++.+|.||||..
T Consensus 145 ~~~~~~----~~~g~PvvvKP~~g~-----------gs~Gv~-~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g- 207 (445)
T PRK08462 145 EAKKIA----KEIGYPVILKAAAGG-----------GGRGMR-VVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN- 207 (445)
T ss_pred HHHHHH----HHcCCCEEEEeCCCC-----------CCCCeE-EECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC-
Confidence 111111 123489999999997 356664 33321100000100 0 00013567999999964
Q ss_pred CceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCce-eeEe-eCCH----HHHHHHHHHHHHhCCcc-ceeeEEee
Q psy10158 250 GTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEI-RYPV-ILSN----AEKLISRKVCLAFKQTV-CGFDLLRA 319 (1266)
Q Consensus 250 GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEi-RypV-~LT~----eEK~IA~kaakAFGq~V-CGfDLLRs 319 (1266)
+..+.|.++|. ++++.-.|...+ .+++ .+-+ ..|. .|++ +=+++|.++++++|..= +-||++-.
T Consensus 208 ~~e~~v~v~~~~~g~~~~~g~~~~~~----~~~~--~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~ 281 (445)
T PRK08462 208 PRHIEVQILGDKHGNVIHVGERDCSL----QRRH--QKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLD 281 (445)
T ss_pred CeEEEEEEEECCCCCEEEEEeccccc----eecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEe
Confidence 55577777753 444443332211 1111 1111 1122 4565 34568899999999853 33999887
Q ss_pred -CCCeEEEeecC
Q psy10158 320 -NGKSFVCDVNG 330 (1266)
Q Consensus 320 -~ggsyVcDVNG 330 (1266)
+|++||||||.
T Consensus 282 ~~g~~~viEiNp 293 (445)
T PRK08462 282 SNLDFYFMEMNT 293 (445)
T ss_pred CCCCEEEEEEEC
Confidence 46899999993
No 48
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.69 E-value=5.6e-08 Score=113.53 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=120.9
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCcccccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVES 175 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~ 175 (1266)
.||++++-| ||-- ..+.+.++..+ ||+-++.....+++||....++|+++|||+|.+....-.. ..+.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~-------~~e~ 143 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLAD-------LDEA 143 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCC-------HHHH
Confidence 478888854 4422 23445555555 5667889999999999999999999999998765421000 0001
Q ss_pred CCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cc-ccccCcceEEeeccCCCCc
Q psy10158 176 EDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ES-RVRKSGSFIYEDFMPTDGT 251 (1266)
Q Consensus 176 ~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s-~vr~~gSyIYEEFI~t~Gt 251 (1266)
.+.. ..+..|+|+||.+|. .|.|++ +.+....-...|.- +. ....+..++.|+||. ++.
T Consensus 144 ~~~~----~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~ 206 (472)
T PRK07178 144 LAEA----ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPK 206 (472)
T ss_pred HHHH----HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCe
Confidence 1111 123489999999987 356664 33321100000000 00 001245688999995 366
Q ss_pred eEEEEEEC---CceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHH----HHHHHHHHHhCCcc-ceeeEEee-CCC
Q psy10158 252 DVKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEK----LISRKVCLAFKQTV-CGFDLLRA-NGK 322 (1266)
Q Consensus 252 DVKVYtVG---p~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK----~IA~kaakAFGq~V-CGfDLLRs-~gg 322 (1266)
.|-|-++| ++++|...|...+ -+++..-.|..-...|+++.+ ++|.++++++|..- +.||++.. +|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s~----~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCSI----QRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccce----EecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 66665554 3566666554321 222222222221226777655 48999999999854 45999985 788
Q ss_pred eEEEeecC
Q psy10158 323 SFVCDVNG 330 (1266)
Q Consensus 323 syVcDVNG 330 (1266)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999994
No 49
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.64 E-value=5.9e-08 Score=111.59 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=115.1
Q ss_pred ccceeeccccCCCcHHHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeE--EeccCCCCCcccccccc
Q psy10158 99 IVDCLISFHSKGFPLEKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYA--VLDRESPDPVKHELVES 175 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv--~~~rd~~~~~~~~l~e~ 175 (1266)
.||++|+.++--.-.......++..+ ||+.++.....+++||....++|+++|||+|.+. .+.. . .+.
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~-~--------~~~ 144 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDD-E--------EEA 144 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC-H--------HHH
Confidence 38899987631111123445556555 4677999999999999999999999999998864 3321 0 011
Q ss_pred CCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-ccc-------ccCcceEEeeccC
Q psy10158 176 EDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRV-------RKSGSFIYEDFMP 247 (1266)
Q Consensus 176 ~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~v-------r~~gSyIYEEFI~ 247 (1266)
.+.+. .+..|+|+||++|. .|.|++ +.+. .. ++..- ... ..+..+|.||||+
T Consensus 145 ~~~~~----~~g~PvvvKP~~g~-----------gs~Gv~-iv~~---~~-el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 145 LAIAK----EIGYPVIIKATAGG-----------GGRGMR-VVRT---EA-ELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred HHHHH----HcCCCEEEEECCCC-----------CCceEE-EECC---HH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 11111 23489999999986 355653 3321 11 11100 000 0246799999996
Q ss_pred CCCceEEEEEEC---CceeEEeeccCCCCCCceeecCCCCceeeEeeCCH----HHHHHHHHHHHHhCCc-cceeeEEee
Q psy10158 248 TDGTDVKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEIRYPVILSN----AEKLISRKVCLAFKQT-VCGFDLLRA 319 (1266)
Q Consensus 248 t~GtDVKVYtVG---p~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~----eEK~IA~kaakAFGq~-VCGfDLLRs 319 (1266)
. +..+-|-+++ +++++.-.|.... .+++..-.+..-...|++ +=+++|.++++++|.. ++.||++..
T Consensus 205 g-~~e~~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~ 279 (451)
T PRK08591 205 N-PRHIEIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYE 279 (451)
T ss_pred C-CcEEEEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEc
Confidence 3 4456554444 3455543332110 011000000000123554 3346889999999975 334999987
Q ss_pred -CCCeEEEeecC
Q psy10158 320 -NGKSFVCDVNG 330 (1266)
Q Consensus 320 -~ggsyVcDVNG 330 (1266)
+|++||+|||.
T Consensus 280 ~~g~~~viEINp 291 (451)
T PRK08591 280 KNGEFYFIEMNT 291 (451)
T ss_pred CCCCEEEEEEEC
Confidence 78899999995
No 50
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.64 E-value=9.4e-08 Score=108.96 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=115.2
Q ss_pred cceeeccccCCCcH-HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCC
Q psy10158 100 VDCLISFHSKGFPL-EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESED 177 (1266)
Q Consensus 100 cD~LIsFfS~GfPL-~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D 177 (1266)
+|++|+.. ..++ ..+.+.++..+ |++-++...-.+.+||....++|+++|||+|++..+.... +...
T Consensus 65 id~vi~~~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~---------~~~~ 133 (423)
T TIGR00877 65 IDLAVIGP--EAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPE---------EALS 133 (423)
T ss_pred CCEEEECC--chHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHH---------HHHH
Confidence 56666543 2344 45566777777 5566888899999999999999999999999998885311 1111
Q ss_pred eEEEcCeEecCC-EEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC-Cccc-----ccCcceEEeeccCCCC
Q psy10158 178 HVEVNGIVFNKP-FVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESRV-----RKSGSFIYEDFMPTDG 250 (1266)
Q Consensus 178 ~I~v~G~~~~kP-fVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p-~s~v-----r~~gSyIYEEFI~t~G 250 (1266)
.+. .+..| +|+||..|. .|.|++ +.+. ....... .... ..+..+|+||||+ |
T Consensus 134 ~~~----~~g~P~~VvKp~~~~-----------gg~Gv~-~v~~---~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G 192 (423)
T TIGR00877 134 YIQ----EKGAPAIVVKADGLA-----------AGKGVI-VAKT---NEEAIKAVEEILEQKFGDAGERVVIEEFLD--G 192 (423)
T ss_pred HHH----hcCCCeEEEEECCCC-----------CCCCEE-EECC---HHHHHHHHHHHHHHhcCCCCCeEEEEECcc--C
Confidence 221 23489 999999886 355653 3331 1110000 0000 1245799999997 5
Q ss_pred ceEEE--EEECCceeE-EeeccC-CCCCCceeecCCCCceeeEe-eCCHH-----HHHHHHHHHHHhC------Ccccee
Q psy10158 251 TDVKV--YTVGPDYAH-AEARKS-PALDGKVERDSEGKEIRYPV-ILSNA-----EKLISRKVCLAFK------QTVCGF 314 (1266)
Q Consensus 251 tDVKV--YtVGp~~vh-Ae~RKS-PvvDG~VRRN~hgKEiRypV-~LT~e-----EK~IA~kaakAFG------q~VCGf 314 (1266)
..+-| +.-|..+.. ..+|.- ...+|..--+..+-+.-.|. .|+++ .++++.++.++++ ..++.+
T Consensus 193 ~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~i 272 (423)
T TIGR00877 193 EEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYA 272 (423)
T ss_pred ceEEEEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEE
Confidence 45444 433544332 122211 11222221111111222222 35443 2456666777774 367889
Q ss_pred eEEeeCCCeEEEeecC
Q psy10158 315 DLLRANGKSFVCDVNG 330 (1266)
Q Consensus 315 DLLRs~ggsyVcDVNG 330 (1266)
|++.+.+++||||||.
T Consensus 273 e~~~t~~g~~viEin~ 288 (423)
T TIGR00877 273 GLMLTKEGPKVLEFNC 288 (423)
T ss_pred EEEEECCCcEEEEEEc
Confidence 9999988899999994
No 51
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.63 E-value=7.9e-08 Score=113.56 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=123.2
Q ss_pred cceeeccccCCCcHH--HHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 100 VDCLISFHSKGFPLE--KAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~--KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
+|++++.| ||--+ ...+.++..+ +|+-++.....++.||....++|+++|||+|......-.. ..+..
T Consensus 75 ~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~-------~~e~~ 145 (499)
T PRK08654 75 ADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIED-------IEEAK 145 (499)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCC-------HHHHH
Confidence 68888876 45432 4455555555 5666888999999999999999999999998765431100 00111
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCc-cc-------ccCcceEEeeccCC
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPES-RV-------RKSGSFIYEDFMPT 248 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s-~v-------r~~gSyIYEEFI~t 248 (1266)
+.+. .+..|+|+||.+|. -|.|++ +.+. .. ++..-. .. -.++.++.|+||..
T Consensus 146 ~~a~----~igyPvvIKp~~Gg-----------GG~Gv~-iv~~---~~-eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 146 EIAE----EIGYPVIIKASAGG-----------GGIGMR-VVYS---EE-ELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred HHHH----HhCCCEEEEeCCCC-----------CCCeEE-EeCC---HH-HHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 1111 23489999999986 255664 3331 11 111000 00 02567999999963
Q ss_pred CCceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCceee-E-eeCCHHH----HHHHHHHHHHhCCccce-eeEEe
Q psy10158 249 DGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEIRY-P-VILSNAE----KLISRKVCLAFKQTVCG-FDLLR 318 (1266)
Q Consensus 249 ~GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRy-p-V~LT~eE----K~IA~kaakAFGq~VCG-fDLLR 318 (1266)
+..|-|-++|+ +++|--.|...+ -|| |+|-+-+ | ..|+++. +++|.++++++|..=+| ||++-
T Consensus 206 -~r~ieVqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~ 278 (499)
T PRK08654 206 -PRHIEIQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLY 278 (499)
T ss_pred -CcEEEEEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 56677777764 466666664321 122 2232211 2 1366543 46799999999988766 99999
Q ss_pred eCCCeEEEeecC
Q psy10158 319 ANGKSFVCDVNG 330 (1266)
Q Consensus 319 s~ggsyVcDVNG 330 (1266)
.+|++||||||.
T Consensus 279 ~~g~~yflEiNp 290 (499)
T PRK08654 279 SNGNFYFLEMNT 290 (499)
T ss_pred ECCcEEEEEEEC
Confidence 889999999994
No 52
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.57 E-value=2e-07 Score=107.76 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=114.3
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeE--EeccCCCCCcccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYA--VLDRESPDPVKHELV 173 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv--~~~rd~~~~~~~~l~ 173 (1266)
.||++++-+ ||-- ....+.++..+ ||+.++.....+++||....++|+++|||+|.+. .+.. . .
T Consensus 74 ~id~I~pg~--g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~-~--------~ 142 (449)
T TIGR00514 74 GADAIHPGY--GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED-E--------E 142 (449)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC-H--------H
Confidence 578888765 3311 11233445555 5677999999999999999999999999998864 2321 0 0
Q ss_pred ccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cc-ccccCcceEEeeccCCC
Q psy10158 174 ESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ES-RVRKSGSFIYEDFMPTD 249 (1266)
Q Consensus 174 e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s-~vr~~gSyIYEEFI~t~ 249 (1266)
+..+.+. .+..|+|+||.+|. .|.|++ +.+....-...+.- .. ....++.+|.||||+.
T Consensus 143 e~~~~~~----~ig~PvvvKP~~g~-----------gs~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g- 205 (449)
T TIGR00514 143 ENVRIAK----RIGYPVIIKATAGG-----------GGRGMR-VVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN- 205 (449)
T ss_pred HHHHHHH----HhCCCEEEEeCCCC-----------CCCccE-EECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-
Confidence 0111111 23489999999987 355664 33321100000000 00 0013467999999953
Q ss_pred CceEEEEEEC---CceeEEeeccCCCCCCceeecCCCCceee--EeeCCHHH----HHHHHHHHHHhCCc-cceeeEEee
Q psy10158 250 GTDVKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEIRY--PVILSNAE----KLISRKVCLAFKQT-VCGFDLLRA 319 (1266)
Q Consensus 250 GtDVKVYtVG---p~~vhAe~RKSPvvDG~VRRN~hgKEiRy--pV~LT~eE----K~IA~kaakAFGq~-VCGfDLLRs 319 (1266)
+..+-|-+++ +++++...|-. .+.+. +.+-+.+ +..|+++. +++|.++++++|.. ++.||++-.
T Consensus 206 ~~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~ 279 (449)
T TIGR00514 206 PRHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD 279 (449)
T ss_pred CeEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEe
Confidence 4555554544 34454433311 11111 1121111 22466543 35688999999975 445999887
Q ss_pred -CCCeEEEeecC
Q psy10158 320 -NGKSFVCDVNG 330 (1266)
Q Consensus 320 -~ggsyVcDVNG 330 (1266)
+|++||+|||.
T Consensus 280 ~~g~~~viEiNp 291 (449)
T TIGR00514 280 KNGEFYFMEMNT 291 (449)
T ss_pred CCCCEEEEEEEC
Confidence 78899999993
No 53
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.57 E-value=1.1e-07 Score=108.98 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=110.6
Q ss_pred cceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccC
Q psy10158 100 VDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 100 cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.|++|+.+ |+-. ..+.+.++..+ |+.-++..+-.+.+||....++|.++|||+|++....... ..+..
T Consensus 75 id~I~p~~--~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~-------~~e~~ 145 (450)
T PRK06111 75 AEAIHPGY--GLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLED-------AEEAI 145 (450)
T ss_pred CCEEEeCC--CccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCC-------HHHHH
Confidence 36677654 2211 22344555555 4556888888999999999999999999999873221111 01111
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---C-cccccCcceEEeeccCCCCce
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---E-SRVRKSGSFIYEDFMPTDGTD 252 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~-s~vr~~gSyIYEEFI~t~GtD 252 (1266)
+++. .+..|+|+||.+|. .|.|+. +.+....-...+.. . .....++.+|.||||.- +..
T Consensus 146 ~~~~----~~~~P~VvKP~~g~-----------gs~Gv~-iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g-~~e 208 (450)
T PRK06111 146 AIAR----QIGYPVMLKASAGG-----------GGIGMQ-LVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED-PRH 208 (450)
T ss_pred HHHH----HhCCCEEEEeCCCC-----------CCceEE-EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC-CcE
Confidence 1111 23489999999986 345553 22211100000000 0 00012567999999973 345
Q ss_pred EEEEEEC---CceeEEeeccCCCCCCceeecCCCCcee-eEe-eCC----HHHHHHHHHHHHHhCC-ccceeeEEeeCCC
Q psy10158 253 VKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEIR-YPV-ILS----NAEKLISRKVCLAFKQ-TVCGFDLLRANGK 322 (1266)
Q Consensus 253 VKVYtVG---p~~vhAe~RKSPvvDG~VRRN~hgKEiR-ypV-~LT----~eEK~IA~kaakAFGq-~VCGfDLLRs~gg 322 (1266)
+-+-+++ ++.++.-.|..++.. . |.+-.. .+. .++ .+=+++|.++++++|. .++.||++...++
T Consensus 209 ~~v~v~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g 282 (450)
T PRK06111 209 IEIQLLADTHGNTVYLWERECSVQR----R--HQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQK 282 (450)
T ss_pred EEEEEEEcCCCCEEEEEeecccccc----c--ccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCC
Confidence 5554443 334444333322110 0 111000 011 133 2345788899999998 5777999987665
Q ss_pred -eEEEeecC
Q psy10158 323 -SFVCDVNG 330 (1266)
Q Consensus 323 -syVcDVNG 330 (1266)
+||||||.
T Consensus 283 ~~~viEiN~ 291 (450)
T PRK06111 283 NFYFLEMNT 291 (450)
T ss_pred CEEEEEEEC
Confidence 99999995
No 54
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.49 E-value=9.7e-07 Score=100.15 Aligned_cols=195 Identities=16% Similarity=0.259 Sum_probs=143.8
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccc--cCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCC
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVI--NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESED 177 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~l--Ndl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D 177 (1266)
.|+++|.+..-+ |.+-.+-|+..+.-++ -+.++..++.||.+-|+.++++|||+|.+..++.- .+|...-.
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~~ 139 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAYE 139 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHHH
Confidence 567777776666 7788888887777555 46788999999999999999999999999998641 12322233
Q ss_pred eEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCc-cc------------ccCcceEEee
Q psy10158 178 HVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPES-RV------------RKSGSFIYED 244 (1266)
Q Consensus 178 ~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s-~v------------r~~gSyIYEE 244 (1266)
.+...| +|+.+||..|. -|.|.++|-+....-...+.|++ .+ ..--.+|..|
T Consensus 140 ~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMe 204 (329)
T PF15632_consen 140 ELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVME 204 (329)
T ss_pred hcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEec
Confidence 344555 89999999998 36676544443333333444432 11 1467889999
Q ss_pred ccCCCCceEEEEEECCceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHhCCc-cceeeEEe-eCCC
Q psy10158 245 FMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAFKQT-VCGFDLLR-ANGK 322 (1266)
Q Consensus 245 FI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAFGq~-VCGfDLLR-s~gg 322 (1266)
|++-.---|=|..-++++++|-.|+=- |.+..+.-.++=-++|.++|++||++ +.+|.+-. .+|+
T Consensus 205 yL~G~EySVD~l~~~G~viaaV~R~K~-------------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~ 271 (329)
T PF15632_consen 205 YLPGPEYSVDCLADEGRVIAAVPRRKL-------------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDGN 271 (329)
T ss_pred CCCCCeEEEEEEecCCEEEEEEEEEec-------------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCC
Confidence 999544555566777888888888761 25667777888889999999999997 56899888 7999
Q ss_pred eEEEeec
Q psy10158 323 SFVCDVN 329 (1266)
Q Consensus 323 syVcDVN 329 (1266)
|+++|+|
T Consensus 272 p~LLEIN 278 (329)
T PF15632_consen 272 PKLLEIN 278 (329)
T ss_pred EEEEEeC
Confidence 9999999
No 55
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.47 E-value=9.6e-07 Score=102.95 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=114.5
Q ss_pred CcH-HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecC
Q psy10158 111 FPL-EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNK 188 (1266)
Q Consensus 111 fPL-~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~k 188 (1266)
+|+ ....++++..+ |+.-.+..+-.+.+||....++|+++|||+|++..+... .+...++. .+..
T Consensus 72 ~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~---------~e~~~~~~----~~g~ 138 (434)
T PLN02257 72 APLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP---------AAAKKYIK----EQGA 138 (434)
T ss_pred hHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---------HHHHHHHH----HcCC
Confidence 455 45556666654 344467777788899999999999999999998877531 11122221 2347
Q ss_pred CEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cccc-ccCcceEEeeccCCCCceEEEEE--ECCce
Q psy10158 189 PFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ESRV-RKSGSFIYEDFMPTDGTDVKVYT--VGPDY 262 (1266)
Q Consensus 189 PfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s~v-r~~gSyIYEEFI~t~GtDVKVYt--VGp~~ 262 (1266)
|+|+||..|. .|.|+. +.+........+.. .... ..+..+|.||||. |..+-|.+ =|..+
T Consensus 139 PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~ 204 (434)
T PLN02257 139 PIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGENA 204 (434)
T ss_pred CEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCcE
Confidence 9999999776 477774 33321110000000 0001 1245799999997 44555533 23333
Q ss_pred eEE-ee-ccCCCCCCceeecCCCCceeeEee-CCHHHHH-HHHH-------HHHHhCCccce---eeEEee--CCCeEEE
Q psy10158 263 AHA-EA-RKSPALDGKVERDSEGKEIRYPVI-LSNAEKL-ISRK-------VCLAFKQTVCG---FDLLRA--NGKSFVC 326 (1266)
Q Consensus 263 vhA-e~-RKSPvvDG~VRRN~hgKEiRypV~-LT~eEK~-IA~k-------aakAFGq~VCG---fDLLRs--~ggsyVc 326 (1266)
..- +. ..-.+.||+..-|+.|-+.-.|.. |+++..+ ++.. +.++.|....| +|++-. +|+|||+
T Consensus 205 ~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vL 284 (434)
T PLN02257 205 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLL 284 (434)
T ss_pred EEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEE
Confidence 321 11 133456888888887655544553 7764433 3333 33466776556 576655 5679999
Q ss_pred eecC
Q psy10158 327 DVNG 330 (1266)
Q Consensus 327 DVNG 330 (1266)
|+|-
T Consensus 285 E~N~ 288 (434)
T PLN02257 285 EYNV 288 (434)
T ss_pred EEEC
Confidence 9994
No 56
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.46 E-value=4.6e-07 Score=105.49 Aligned_cols=204 Identities=15% Similarity=0.115 Sum_probs=121.1
Q ss_pred cceeeccccCCCcHHHH-HHHHhhcCCcc-ccCccchhhhhHHHHHHHHHHhcCCCCCCeE-EeccCCCCCccccccccC
Q psy10158 100 VDCLISFHSKGFPLEKA-IKYANLRKPFV-INNLNMQYDIQDRRKVYALLEKEGIEIPRYA-VLDRESPDPVKHELVESE 176 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KA-i~Y~klrkp~~-lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv-~~~rd~~~~~~~~l~e~~ 176 (1266)
.|.+|+.. +-||..+ ...++..+..+ ..+...-.+.+||....+.|.++|||+|.+. .+... . +...
T Consensus 66 id~Vi~~~--d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~-~-----e~~~-- 135 (435)
T PRK06395 66 VDIVFVGP--DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE-K-----DAAR-- 135 (435)
T ss_pred CCEEEECC--ChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh-H-----HHHH--
Confidence 57777753 3456332 34444445443 4778888899999999999999999998543 44211 0 0000
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcc-cccCcceEEeeccCCCCceEEE
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESR-VRKSGSFIYEDFMPTDGTDVKV 255 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~-vr~~gSyIYEEFI~t~GtDVKV 255 (1266)
.+..+ ..|+|+||.++. .|.|+..+..+..+....+..-.. ..+++.+|.||||.-.--.|=+
T Consensus 136 ~~~~~-----~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd~ 199 (435)
T PRK06395 136 DYITS-----MKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQA 199 (435)
T ss_pred HHHhh-----CCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEEE
Confidence 01122 389999999987 577886333222211111110011 1346789999999632356667
Q ss_pred EEECCceeEE-eecc-CCCCCCceeecCCCCceee-----EeeCCHHHH----HHHHHHHHHhCC------ccceeeEEe
Q psy10158 256 YTVGPDYAHA-EARK-SPALDGKVERDSEGKEIRY-----PVILSNAEK----LISRKVCLAFKQ------TVCGFDLLR 318 (1266)
Q Consensus 256 YtVGp~~vhA-e~RK-SPvvDG~VRRN~hgKEiRy-----pV~LT~eEK----~IA~kaakAFGq------~VCGfDLLR 318 (1266)
|+-|..+..- ..+. -.+.||++-=|+.|=+.-. +-.|+++++ +|+.+++++++. -|..+++.-
T Consensus 200 ~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~l 279 (435)
T PRK06395 200 FSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMD 279 (435)
T ss_pred EEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEE
Confidence 7766664221 1110 1123666555554433221 123776554 667788899994 445688888
Q ss_pred eCCCeEEEeec
Q psy10158 319 ANGKSFVCDVN 329 (1266)
Q Consensus 319 s~ggsyVcDVN 329 (1266)
++++|||+|+|
T Consensus 280 t~~gp~ViE~n 290 (435)
T PRK06395 280 TPNGVKVIEIN 290 (435)
T ss_pred eCCCcEEEEEe
Confidence 99999999999
No 57
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.45 E-value=4.6e-07 Score=115.50 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=120.3
Q ss_pred cceeeccccCCCcHHHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCe
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDH 178 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~ 178 (1266)
.|.+|+-|+...++ ++..-++..+ |+.-++.+....+.||.+..++|++.|||+|++..+.... +....
T Consensus 631 ~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~e---------e~~~~ 700 (1068)
T PRK12815 631 IKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEE---------EAFAF 700 (1068)
T ss_pred CCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHH---------HHHHH
Confidence 68888877665433 2222233333 5566889999999999999999999999999999885311 11111
Q ss_pred EEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCcccc--ccCCcccccCcceEEeeccCCCCceEEEE
Q psy10158 179 VEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSV--YSPESRVRKSGSFIYEDFMPTDGTDVKVY 256 (1266)
Q Consensus 179 I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~--y~p~s~vr~~gSyIYEEFI~t~GtDVKVY 256 (1266)
+. .+..|+|+||..|. .|.|+. +.+ |.... |..+ ....+..+|.||||....-+|-++
T Consensus 701 ~~----~igyPvVVKP~~~~-----------Gg~gv~-iv~---~~eeL~~~l~~-~~s~~~~vlIeefI~G~E~~Vd~i 760 (1068)
T PRK12815 701 AK----RIGYPVLIRPSYVI-----------GGQGMA-VVY---DEPALEAYLAE-NASQLYPILIDQFIDGKEYEVDAI 760 (1068)
T ss_pred HH----hcCCCEEEEeCCCC-----------CCCCEE-EEC---CHHHHHHHHHH-hhcCCCCEEEEEeecCceEEEEEE
Confidence 11 23489999999885 244543 222 11100 0000 122467899999994333555555
Q ss_pred EECCceeE-E-eeccCCCCCCceeecCCCCcee---eEeeCCHH----HHHHHHHHHHHhCC-ccceeeEEeeCCCeEEE
Q psy10158 257 TVGPDYAH-A-EARKSPALDGKVERDSEGKEIR---YPVILSNA----EKLISRKVCLAFKQ-TVCGFDLLRANGKSFVC 326 (1266)
Q Consensus 257 tVGp~~vh-A-e~RKSPvvDG~VRRN~hgKEiR---ypV~LT~e----EK~IA~kaakAFGq-~VCGfDLLRs~ggsyVc 326 (1266)
.=|..++. + +.+.. +...|.|... .|..|+++ =+++|.++++++|. .++.||++..++++|||
T Consensus 761 ~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yvi 833 (1068)
T PRK12815 761 SDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYVL 833 (1068)
T ss_pred EcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEEE
Confidence 55554322 1 22111 1224555543 24467764 34678899999984 46669999999999999
Q ss_pred eecC
Q psy10158 327 DVNG 330 (1266)
Q Consensus 327 DVNG 330 (1266)
|||-
T Consensus 834 EiNp 837 (1068)
T PRK12815 834 EVNP 837 (1068)
T ss_pred EEeC
Confidence 9994
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.43 E-value=3.2e-07 Score=117.37 Aligned_cols=197 Identities=18% Similarity=0.202 Sum_probs=120.4
Q ss_pred cceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEe-ccCCCCCcccccccc
Q psy10158 100 VDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVL-DRESPDPVKHELVES 175 (1266)
Q Consensus 100 cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~-~rd~~~~~~~~l~e~ 175 (1266)
+|+++|-| ||-- ....+.++..+ +|+-++.....+++||....++|.++|||+|..... -.+ ..+.
T Consensus 75 iDaI~PGy--GflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~--------~eea 144 (1143)
T TIGR01235 75 VDAIHPGY--GFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET--------MEEV 144 (1143)
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC--------HHHH
Confidence 67888765 3422 22334445544 567788999999999999999999999999986532 111 0111
Q ss_pred CCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cc-ccccCcceEEeeccCCCCc
Q psy10158 176 EDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ES-RVRKSGSFIYEDFMPTDGT 251 (1266)
Q Consensus 176 ~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s-~vr~~gSyIYEEFI~t~Gt 251 (1266)
.+... .+..|+|+||..|. -|.|++ +.+....-...|.- ++ .--.++.++.|+||. ++.
T Consensus 145 ~~~ae----~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~r 207 (1143)
T TIGR01235 145 LDFAA----AIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPR 207 (1143)
T ss_pred HHHHH----HcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCe
Confidence 11111 23489999999986 255653 33321100000000 00 000256799999994 357
Q ss_pred eEEEEEECCc---eeEEeeccCCCCCCceeecCCCC--ceeeEeeCCHHH----HHHHHHHHHHhCCc-cceeeEEee-C
Q psy10158 252 DVKVYTVGPD---YAHAEARKSPALDGKVERDSEGK--EIRYPVILSNAE----KLISRKVCLAFKQT-VCGFDLLRA-N 320 (1266)
Q Consensus 252 DVKVYtVGp~---~vhAe~RKSPvvDG~VRRN~hgK--EiRypV~LT~eE----K~IA~kaakAFGq~-VCGfDLLRs-~ 320 (1266)
.|.|-++|.. ++|...|-.. +.|. |.| |..-...|+++. .++|.++++++|.. ++.||+|.. +
T Consensus 208 eIeVqVlgD~~G~vv~l~eRdcs-----vqrr-~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d 281 (1143)
T TIGR01235 208 HIEVQLLGDKHGNVVHLFERDCS-----VQRR-HQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDND 281 (1143)
T ss_pred EEEEEEEEeCCCCEEEEEecccc-----cccc-CceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC
Confidence 7888888654 6777767542 2221 222 222123566643 46889999999955 566999986 5
Q ss_pred CCeEEEeec
Q psy10158 321 GKSFVCDVN 329 (1266)
Q Consensus 321 ggsyVcDVN 329 (1266)
|++||+|||
T Consensus 282 g~~yfIEVN 290 (1143)
T TIGR01235 282 GKFYFIEVN 290 (1143)
T ss_pred CcEEEEEee
Confidence 789999999
No 59
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.40 E-value=1.2e-06 Score=102.51 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=116.6
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeE--EeccCCCCCcccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYA--VLDRESPDPVKHELV 173 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv--~~~rd~~~~~~~~l~ 173 (1266)
.+|++++.| ||-- ....+.++..+ +|+-++.....+++||....++|.++|||+|... .+.. . .
T Consensus 77 ~~daI~pg~--g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~-~--------~ 145 (467)
T PRK12833 77 GADAIHPGY--GFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS-L--------D 145 (467)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-H--------H
Confidence 478888865 3322 12233344444 6778899999999999999999999999998775 3321 0 0
Q ss_pred ccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---C--cccccCcceEEeeccCC
Q psy10158 174 ESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---E--SRVRKSGSFIYEDFMPT 248 (1266)
Q Consensus 174 e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~--s~vr~~gSyIYEEFI~t 248 (1266)
+..... ..+..|+|+||..|. .|.|++ +.+....-...|.- + ..+ .++.++.|+||+.
T Consensus 146 e~~~~~----~~igyPvvvKp~~gg-----------gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~-~~~~vlvEefi~~ 208 (467)
T PRK12833 146 AALEVA----ARIGYPLMIKAAAGG-----------GGRGIR-VAHDAAQLAAELPLAQREAQAAF-GDGGVYLERFIAR 208 (467)
T ss_pred HHHHHH----HHhCCCEEEEECCCC-----------CCCeEE-EECCHHHHHHHHHHHHHHHHHhc-CCCcEEEEecCCC
Confidence 011111 123489999999987 356664 33321100000000 0 001 2567999999975
Q ss_pred CCceEEEEEECCc--eeEEeeccCCCCCCceeecCCCCcee-e-EeeCCHH----HHHHHHHHHHHhCCc-cceeeEEee
Q psy10158 249 DGTDVKVYTVGPD--YAHAEARKSPALDGKVERDSEGKEIR-Y-PVILSNA----EKLISRKVCLAFKQT-VCGFDLLRA 319 (1266)
Q Consensus 249 ~GtDVKVYtVGp~--~vhAe~RKSPvvDG~VRRN~hgKEiR-y-pV~LT~e----EK~IA~kaakAFGq~-VCGfDLLRs 319 (1266)
|..|-|-++|+. ++|.-.|..- +.|. +.|-.. . +..|+++ =+++|.++++++|.. ++.||++..
T Consensus 209 -~~ei~v~v~~dg~~~~~~~~~~~~-----~~r~-~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~ 281 (467)
T PRK12833 209 -ARHIEVQILGDGERVVHLFERECS-----LQRR-RQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFD 281 (467)
T ss_pred -CEEEEEEEEeCCCcEEEEEEeecc-----cccC-CccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEe
Confidence 577777777653 4554444221 1110 111111 1 1246653 345889999999986 345898875
Q ss_pred --CCCeEEEeecC
Q psy10158 320 --NGKSFVCDVNG 330 (1266)
Q Consensus 320 --~ggsyVcDVNG 330 (1266)
+|++||+|||.
T Consensus 282 ~~~g~~~~iEvNp 294 (467)
T PRK12833 282 DARGEFYFIEMNT 294 (467)
T ss_pred cCCCCEEEEEEEC
Confidence 37799999995
No 60
>PLN02735 carbamoyl-phosphate synthase
Probab=98.34 E-value=9.3e-07 Score=113.11 Aligned_cols=195 Identities=13% Similarity=0.196 Sum_probs=123.6
Q ss_pred ccceeeccccCCCcHHHHHH---HHhh----------cCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCC
Q psy10158 99 IVDCLISFHSKGFPLEKAIK---YANL----------RKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESP 165 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~---Y~kl----------rkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~ 165 (1266)
.+|++|+-|+...|+.-|.. ++.. .-+++..+.+...+..||.+..++|+++|||+|++..+....
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~e- 727 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEA- 727 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHH-
Confidence 37899999988887643222 2221 124677889999999999999999999999999998775310
Q ss_pred CCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cc-ccccCcceE
Q psy10158 166 DPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ES-RVRKSGSFI 241 (1266)
Q Consensus 166 ~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s-~vr~~gSyI 241 (1266)
+....+. .+..|+|+||..|. .|.|+. +.+ |.. ++.. .. ....++.+|
T Consensus 728 --------ea~~~a~----~iGyPvvVKP~~g~-----------gG~G~~-iV~---~~e-eL~~al~~a~~~~~~~~vl 779 (1102)
T PLN02735 728 --------DALAIAK----RIGYPVVVRPSYVL-----------GGRAME-IVY---SDD-KLKTYLETAVEVDPERPVL 779 (1102)
T ss_pred --------HHHHHHH----hcCCCeEEEeCCCC-----------CCCcEE-EEC---CHH-HHHHHHHHHHHhcCCCCEE
Confidence 1111111 23589999999975 355653 222 211 1110 00 112356799
Q ss_pred EeeccCCCCceEEEEEECC---ceeE--EeeccCCCCCCceeecCCCCceeeEe---eCCHHH----HHHHHHHHHHhCC
Q psy10158 242 YEDFMPTDGTDVKVYTVGP---DYAH--AEARKSPALDGKVERDSEGKEIRYPV---ILSNAE----KLISRKVCLAFKQ 309 (1266)
Q Consensus 242 YEEFI~t~GtDVKVYtVGp---~~vh--Ae~RKSPvvDG~VRRN~hgKEiRypV---~LT~eE----K~IA~kaakAFGq 309 (1266)
.|+||. +|.-|=|-++++ +++. .+.+. -+...|.|+....+ .|+++. +++|.++++++|.
T Consensus 780 VEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~-------~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~ 851 (1102)
T PLN02735 780 VDKYLS-DATEIDVDALADSEGNVVIGGIMEHI-------EQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNV 851 (1102)
T ss_pred EEEecC-CcEEEEEEEEECCCCCEEEecceEee-------eccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999995 366666666653 2221 11111 11223555554443 577655 4679999999985
Q ss_pred -ccceeeEEee-CCCeEEEeecC
Q psy10158 310 -TVCGFDLLRA-NGKSFVCDVNG 330 (1266)
Q Consensus 310 -~VCGfDLLRs-~ggsyVcDVNG 330 (1266)
.++.+|++-. +|++||+|||-
T Consensus 852 ~G~~~vqf~v~~dg~~yviEiNp 874 (1102)
T PLN02735 852 CGLMNCQYAITPSGEVYIIEANP 874 (1102)
T ss_pred cceeeEEEEEcCCCcEEEEEEeC
Confidence 4677999885 78899999994
No 61
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.33 E-value=4.8e-06 Score=103.41 Aligned_cols=255 Identities=14% Similarity=0.176 Sum_probs=151.7
Q ss_pred CeEEEEEEecCC----ccCChhHHHHHHHHhhcCcEEEEEe-cccc--cc--cccccc------------------cccc
Q psy10158 49 KQVIVGVCAMAK----KSQSKPMKEILTRLEEFEFIKMIVF-SEET--IQ--KPVDEW------------------PIVD 101 (1266)
Q Consensus 49 ~~i~iGVCAMd~----Ka~SkPMr~IL~RL~~~g~f~viiF-~dkv--IL--e~vE~W------------------P~cD 101 (1266)
++.+|+|.+=-. -+--+-=++|++-|.+.++ +|+.+ -++. .. +.+..| ..+|
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~-~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 528 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFY-DVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVD 528 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCc-EEEEEEECCCCeEEecccccccccccccccccchhhhhccccCC
Confidence 356677765322 2222345788888877664 55533 2221 11 111111 3478
Q ss_pred eeeccccCCCcH-HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE
Q psy10158 102 CLISFHSKGFPL-EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV 179 (1266)
Q Consensus 102 ~LIsFfS~GfPL-~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I 179 (1266)
++++-..-++=. -....++++.+ ||+=.+..+.++.+||..+-++|+++|||+|++..+.+.......... ....+
T Consensus 529 ~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~--~~~~~ 606 (809)
T PRK14573 529 VVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELC--LAHIV 606 (809)
T ss_pred EEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHH--HHHHH
Confidence 877665332334 36778888887 566679999999999999999999999999999888642100000000 00011
Q ss_pred EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC--cccccCcceEEeeccCCCCceEEEEE
Q psy10158 180 EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE--SRVRKSGSFIYEDFMPTDGTDVKVYT 257 (1266)
Q Consensus 180 ~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~--s~vr~~gSyIYEEFI~t~GtDVKVYt 257 (1266)
..|..|+|+||.++- .+.|+. ++.|.. ++..- .....+..+|.|||+. +|+.+-|-+
T Consensus 607 ----~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~v 665 (809)
T PRK14573 607 ----EAFSFPMFVKTAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRL-GSREIEVSC 665 (809)
T ss_pred ----HhcCCCEEEeeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEE
Confidence 124589999999975 245653 232222 11111 0122456799999986 479999999
Q ss_pred ECCce---eEE--eeccCCCCCCc--eeecC--CCC---ceeeEeeCCHH----HHHHHHHHHHHhCC-ccceeeEEee-
Q psy10158 258 VGPDY---AHA--EARKSPALDGK--VERDS--EGK---EIRYPVILSNA----EKLISRKVCLAFKQ-TVCGFDLLRA- 319 (1266)
Q Consensus 258 VGp~~---vhA--e~RKSPvvDG~--VRRN~--hgK---EiRypV~LT~e----EK~IA~kaakAFGq-~VCGfDLLRs- 319 (1266)
+|..- +.+ ..+.. ..+. +..+- +|+ .+.+|..|+++ =+++|.++++++|. .+|.||++-.
T Consensus 666 l~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~ 743 (809)
T PRK14573 666 LGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE 743 (809)
T ss_pred EeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC
Confidence 98752 221 22222 1121 11222 333 23456677764 35678899999995 4677998876
Q ss_pred CCCeEEEeec
Q psy10158 320 NGKSFVCDVN 329 (1266)
Q Consensus 320 ~ggsyVcDVN 329 (1266)
+|.+||+|||
T Consensus 744 ~g~~yv~EiN 753 (809)
T PRK14573 744 EGNFWLSEMN 753 (809)
T ss_pred CCCEEEEEee
Confidence 5789999999
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.32 E-value=1.4e-06 Score=111.83 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=118.5
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEE--eccCCCCCcccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAV--LDRESPDPVKHELV 173 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~--~~rd~~~~~~~~l~ 173 (1266)
.+|++++.| ||-- ....+.++..+ +|+-++.....+++||....++|.++|||+|.... +.. . .
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s-~--------e 146 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDD-I--------E 146 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCC-H--------H
Confidence 378888865 4322 12233344444 56778999999999999999999999999976543 321 0 0
Q ss_pred ccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccC---Cc-ccccCcceEEeeccCCC
Q psy10158 174 ESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSP---ES-RVRKSGSFIYEDFMPTD 249 (1266)
Q Consensus 174 e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p---~s-~vr~~gSyIYEEFI~t~ 249 (1266)
+..+.. ..+..|+|+||.+|. .|.|++ +.+....-...|.- ++ ....++.+++|+||.-
T Consensus 147 ea~~~a----~~iGyPvVVKP~~Gg-----------GGrGv~-vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g- 209 (1146)
T PRK12999 147 EALEFA----EEIGYPIMLKASAGG-----------GGRGMR-IVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN- 209 (1146)
T ss_pred HHHHHH----HHhCCCEEEEECCCC-----------CCCCeE-EeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-
Confidence 111111 123489999999996 255653 33321100000100 00 0012578999999973
Q ss_pred CceEEEEEEC---CceeEEeeccCCCCCCceeecCCCCce-eeE-eeCCHHH----HHHHHHHHHHhCCccce-eeEEee
Q psy10158 250 GTDVKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEI-RYP-VILSNAE----KLISRKVCLAFKQTVCG-FDLLRA 319 (1266)
Q Consensus 250 GtDVKVYtVG---p~~vhAe~RKSPvvDG~VRRN~hgKEi-Ryp-V~LT~eE----K~IA~kaakAFGq~VCG-fDLLRs 319 (1266)
+..|-|-++| ++++|--.|-.. +.|+ |.|-+ ..| ..|+++. +++|.++++++|..=+| ||++..
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcs-----vqrr-~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd 283 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCS-----VQRR-HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVD 283 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccc-----eeec-CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE
Confidence 4667776665 355665455432 2221 23321 122 2567654 34899999999986544 999987
Q ss_pred -CCCeEEEeecC
Q psy10158 320 -NGKSFVCDVNG 330 (1266)
Q Consensus 320 -~ggsyVcDVNG 330 (1266)
+|++||+|||-
T Consensus 284 ~dg~~yfIEINp 295 (1146)
T PRK12999 284 ADGNFYFIEVNP 295 (1146)
T ss_pred CCCCEEEEEEEC
Confidence 45899999994
No 63
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.31 E-value=1.8e-06 Score=110.13 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=120.2
Q ss_pred ccceeeccccCCCcHHHHHH-----HHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccc
Q psy10158 99 IVDCLISFHSKGFPLEKAIK-----YANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHEL 172 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~-----Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l 172 (1266)
..|++|+.++....|.-++. .++..+ +++-.+.....+.+||.+..+.|+++|||+|++..++...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 153 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSME-------- 153 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHH--------
Confidence 35888887765555543332 345555 4556788999999999999999999999999999886411
Q ss_pred cccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCc--cc--ccCcceEEeeccCC
Q psy10158 173 VESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPES--RV--RKSGSFIYEDFMPT 248 (1266)
Q Consensus 173 ~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s--~v--r~~gSyIYEEFI~t 248 (1266)
+..+.+ ..+..|+|+||..|.+ |.|+. +.+ |.. ++..-. .+ ...+.+|+||||+-
T Consensus 154 -e~~~~~----~~ig~PvVVKP~~g~g-----------g~Gv~-iv~---~~e-eL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 154 -EALEVA----EEIGYPVIIRPSFTLG-----------GTGGG-IAY---NEE-ELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred -HHHHHH----HHcCCCeEEEcCCCCC-----------CCCeE-EEC---CHH-HHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 111111 1234899999998762 55553 332 211 111000 11 12467999999962
Q ss_pred CCceEEEEEECC---cee--EEeeccCCCCCCceeecCCCCcee--eEe-eCCHHH----HHHHHHHHHHhCCc--ccee
Q psy10158 249 DGTDVKVYTVGP---DYA--HAEARKSPALDGKVERDSEGKEIR--YPV-ILSNAE----KLISRKVCLAFKQT--VCGF 314 (1266)
Q Consensus 249 ~GtDVKVYtVGp---~~v--hAe~RKSPvvDG~VRRN~hgKEiR--ypV-~LT~eE----K~IA~kaakAFGq~--VCGf 314 (1266)
. ..+-+-++.+ +++ ..+.+..|. ..|.+++. .|. .|++++ +++|.++++++|.. +|.|
T Consensus 213 ~-~Eisv~v~rd~~g~~~~~~~~e~~dp~-------gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~v 284 (1066)
T PRK05294 213 W-KEYEYEVMRDKNDNCIIVCSIENIDPM-------GVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNV 284 (1066)
T ss_pred c-eEEEEEEEEcCCCCEEEEeeeeecccc-------ceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEE
Confidence 1 3333333321 111 123333331 13444442 233 578755 47899999999997 9999
Q ss_pred eEEee--CCCeEEEeec
Q psy10158 315 DLLRA--NGKSFVCDVN 329 (1266)
Q Consensus 315 DLLRs--~ggsyVcDVN 329 (1266)
|+.-. +|+.||+|||
T Consensus 285 ef~~~~~~g~~~viEiN 301 (1066)
T PRK05294 285 QFALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEEEECCCCcEEEEEee
Confidence 99876 3679999999
No 64
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.31 E-value=3.5e-06 Score=101.58 Aligned_cols=193 Identities=16% Similarity=0.210 Sum_probs=117.6
Q ss_pred cceeeccccCCCcHHHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV 179 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I 179 (1266)
||++ .|-....+.. ++++++..++.+.++.....+.+||...-+.|+++|||+|++..+.... +....+
T Consensus 84 ~dvI-t~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~---------el~~~~ 152 (577)
T PLN02948 84 CDVL-TVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE---------SAEKAG 152 (577)
T ss_pred CCEE-EEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH---------HHHHHH
Confidence 5654 3434455544 4578887776677889999999999999999999999999999885310 111111
Q ss_pred EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cc-cccCcceEEeeccCCCCceEEEEE
Q psy10158 180 EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SR-VRKSGSFIYEDFMPTDGTDVKVYT 257 (1266)
Q Consensus 180 ~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~-vr~~gSyIYEEFI~t~GtDVKVYt 257 (1266)
..|..|+|+||.+|. +.|.|+. +.+ +.. ++..- .. ...+..+|.|+||+ ....+-|.+
T Consensus 153 ----~~ig~P~VvKP~~gg----------s~g~Gv~-~v~---~~~-eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v 212 (577)
T PLN02948 153 ----DLFGYPLMLKSRRLA----------YDGRGNA-VAK---TEE-DLSSAVAALGGFERGLYAEKWAP-FVKELAVMV 212 (577)
T ss_pred ----HhcCCcEEEEeCCCC----------CCCCCeE-EEC---CHH-HHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEE
Confidence 123489999999763 0155653 222 211 11100 01 12245789999994 236677776
Q ss_pred ECC---ceeEEeeccCCCCCCceeecCCCCceeeEeeCCH----HHHHHHHHHHHHhCCc-cceeeEEeeC-CCeEEEee
Q psy10158 258 VGP---DYAHAEARKSPALDGKVERDSEGKEIRYPVILSN----AEKLISRKVCLAFKQT-VCGFDLLRAN-GKSFVCDV 328 (1266)
Q Consensus 258 VGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~----eEK~IA~kaakAFGq~-VCGfDLLRs~-ggsyVcDV 328 (1266)
++. ++.. -|+++- +.++-.......|..|++ +=+++|.++++++|.. ++.+|++... |..||+||
T Consensus 213 ~r~~~G~i~~-----~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EI 286 (577)
T PLN02948 213 ARSRDGSTRC-----YPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEV 286 (577)
T ss_pred EECCCCCEEE-----ecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEE
Confidence 642 2221 343221 122211112235666776 3356788999999732 4578988874 55799999
Q ss_pred c
Q psy10158 329 N 329 (1266)
Q Consensus 329 N 329 (1266)
|
T Consensus 287 n 287 (577)
T PLN02948 287 A 287 (577)
T ss_pred e
Confidence 9
No 65
>PLN02735 carbamoyl-phosphate synthase
Probab=98.31 E-value=2.7e-06 Score=108.93 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=124.3
Q ss_pred ccceeeccccCCCcHHHHH-----HHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccc
Q psy10158 99 IVDCLISFHSKGFPLEKAI-----KYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHEL 172 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi-----~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l 172 (1266)
.+|++|+-++...++.=|+ ..++..+ |++-++.....+..||...-++|.++|||+|++..+....
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 169 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLD-------- 169 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHH--------
Confidence 6899999877656664333 2345555 5777899999999999999999999999999998885310
Q ss_pred cccCCeE-EEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC----cccccCcceEEeeccC
Q psy10158 173 VESEDHV-EVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE----SRVRKSGSFIYEDFMP 247 (1266)
Q Consensus 173 ~e~~D~I-~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~----s~vr~~gSyIYEEFI~ 247 (1266)
+..+.+ .+++ .|+|+||..|. .|.|+. + +.|.. ++..- .....++.+|.||||.
T Consensus 170 -ea~~~~~~iG~----yPvVVKP~~~~-----------GG~Gv~-i---v~n~e-EL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 170 -ECFEIAEDIGE----FPLIIRPAFTL-----------GGTGGG-I---AYNKE-EFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred -HHHHHHHHhCC----CCEEEEeCCCC-----------CCCceE-E---ECCHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 111111 2222 79999999965 233442 2 22211 11100 0113467789999996
Q ss_pred CCCceEEEEEECC---ce--eEEeeccCCCCCCceeecCCCCceee--Ee-eCCHHHH----HHHHHHHHHhCC--ccce
Q psy10158 248 TDGTDVKVYTVGP---DY--AHAEARKSPALDGKVERDSEGKEIRY--PV-ILSNAEK----LISRKVCLAFKQ--TVCG 313 (1266)
Q Consensus 248 t~GtDVKVYtVGp---~~--vhAe~RKSPvvDG~VRRN~hgKEiRy--pV-~LT~eEK----~IA~kaakAFGq--~VCG 313 (1266)
- ..-+=|=++++ ++ +-.+++..| .| .|.|.... |. .|++++. ++|.+|++++|. .+|.
T Consensus 229 G-~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~n 300 (1102)
T PLN02735 229 G-WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSN 300 (1102)
T ss_pred C-CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceE
Confidence 2 24555655543 22 233444444 22 24444432 44 4787544 458999999997 5899
Q ss_pred eeEEee--CCCeEEEeecC
Q psy10158 314 FDLLRA--NGKSFVCDVNG 330 (1266)
Q Consensus 314 fDLLRs--~ggsyVcDVNG 330 (1266)
||+.-. +|..||+|||.
T Consensus 301 Vqf~l~~~~g~~~ViEVNP 319 (1102)
T PLN02735 301 VQFAVNPVDGEVMIIEMNP 319 (1102)
T ss_pred EEEEEECCCCcEEEEEecC
Confidence 999875 57899999993
No 66
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.30 E-value=3e-06 Score=93.27 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=115.5
Q ss_pred HHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEe
Q psy10158 114 EKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEK 193 (1266)
Q Consensus 114 ~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeK 193 (1266)
.++-+|++..++ ...+.+..-|||++|..|..+ +++|.|.... +. .+-+|+|
T Consensus 93 ri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~-~~----------------------~~k~ViK 144 (307)
T COG1821 93 RIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWA-EE----------------------PKKYVIK 144 (307)
T ss_pred HHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCccccc-cC----------------------CceEEec
Confidence 456667765544 357788889999999999999 9999998642 11 1669999
Q ss_pred cccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC--------CCceEEEEEECCceeEE
Q psy10158 194 PVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT--------DGTDVKVYTVGPDYAHA 265 (1266)
Q Consensus 194 pv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t--------~GtDVKVYtVGp~~vhA 265 (1266)
|.+|. +|.|. +|-. + .| ++ .|-||||+- .|++|.+.+|..+++.-
T Consensus 145 p~dgC-----------gge~i--~~~~-~------~p------d~-~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~ 197 (307)
T COG1821 145 PADGC-----------GGEGI--LFGR-D------FP------DI-EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIF 197 (307)
T ss_pred ccccC-----------Cccee--eccC-C------Cc------ch-hhHHHhcCCcceEEEEecCCccccceechhhhhh
Confidence 99997 45554 3321 0 12 22 789999983 57888888887775532
Q ss_pred eeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHhC-C-ccceeeEEeeCCCeEEEeecC
Q psy10158 266 EARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAFK-Q-TVCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 266 e~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAFG-q-~VCGfDLLRs~ggsyVcDVNG 330 (1266)
+..+.--.|+..++..+|..+-.++|+++.+.++ + .-.||||.-+ ++|||+|||-
T Consensus 198 ---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINp 254 (307)
T COG1821 198 ---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINP 254 (307)
T ss_pred ---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CCcEEEEecC
Confidence 4456667789999999999999999999999887 3 4679999999 9999999993
No 67
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=1.4e-05 Score=90.45 Aligned_cols=236 Identities=19% Similarity=0.212 Sum_probs=153.7
Q ss_pred HHHHHHHHhhcCcEEEEEecccccc-ccccccc-----ccceeeccccCCCc-H-HHHHHHHhhcC-CccccCccchhhh
Q psy10158 67 MKEILTRLEEFEFIKMIVFSEETIQ-KPVDEWP-----IVDCLISFHSKGFP-L-EKAIKYANLRK-PFVINNLNMQYDI 137 (1266)
Q Consensus 67 Mr~IL~RL~~~g~f~viiF~dkvIL-e~vE~WP-----~cD~LIsFfS~GfP-L-~KAi~Y~klrk-p~~lNdl~~Q~il 137 (1266)
.+++++-|..+++=-.-+...+..+ ...+.|+ .+|++++. ..|+. . .....|++..+ ||+...+..=++.
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~-lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~ 101 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPV-LHGPYGEDGTIQGLLELLGIPYVGKGVLASAGA 101 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEe-CCCCCCCCchHHHHHHHhCCCEecCchhhhhhc
Confidence 7778877777554222222233333 2222222 45555544 23332 2 46778888887 9999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhh
Q psy10158 138 QDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRL 217 (1266)
Q Consensus 138 rDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~L 217 (1266)
-||-.+-++++..|||++.++.+.++.... +..+.+.. .+..|+++||...- +-.|.. -
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~-----~~~e~~~~----~l~~p~~Vkp~~~g-----------SSvg~~-~ 160 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEYSS-----VIVEEVEE----GLGFPLFVKPAREG-----------SSVGRS-P 160 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccchh-----HHHHHhhc----ccCCCEEEEcCCcc-----------ceeeEE-E
Confidence 999999999999999999999998753200 01112222 24599999998752 122332 2
Q ss_pred hcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCC--CC-CC-ce----eecCCCCceeeE
Q psy10158 218 FRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSP--AL-DG-KV----ERDSEGKEIRYP 289 (1266)
Q Consensus 218 frKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSP--vv-DG-~V----RRN~hgKEiRyp 289 (1266)
...+|+-.+ ..+...+.+...+.|+|+. |+.|.|=+.|... +++.-++ +. +| .| ..|+++++..+.
T Consensus 161 v~~~~d~~~--~~e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~ 234 (317)
T COG1181 161 VNVEGDLQS--ALELAFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYD 234 (317)
T ss_pred eeeccchHH--HHHHHHHhCCceeeccCCC--cceEEEEecCCcc--cceecCceEEecCCCeEEeeeccccCCCCceee
Confidence 222332222 1122446789999999999 9999999999865 2222221 01 32 33 267884544433
Q ss_pred e--eCCH----HHHHHHHHHHHHhC-CccceeeEEeeC--CCeEEEeecC
Q psy10158 290 V--ILSN----AEKLISRKVCLAFK-QTVCGFDLLRAN--GKSFVCDVNG 330 (1266)
Q Consensus 290 V--~LT~----eEK~IA~kaakAFG-q~VCGfDLLRs~--ggsyVcDVNG 330 (1266)
+ .||+ +=+++|.+|++|+| ..+||+|++-.. |+.|++|||-
T Consensus 235 ~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt 284 (317)
T COG1181 235 IPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNT 284 (317)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeC
Confidence 3 3676 44789999999999 999999999987 8999999993
No 68
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.23 E-value=4e-07 Score=96.25 Aligned_cols=158 Identities=22% Similarity=0.315 Sum_probs=98.2
Q ss_pred HHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCcc
Q psy10158 146 LLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRS 225 (1266)
Q Consensus 146 iL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkS 225 (1266)
+|+++|||||+++.+.+.... .+.+...-..+..|+|+||..+- ...|+. ++.|..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~---------~~~~~~~~~~l~~P~~VKP~~~G-----------sS~Gi~----~v~~~~ 56 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDD---------SDSIEKILEDLGFPLFVKPASEG-----------SSIGIS----KVHNEE 56 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHH---------HHHHHHHHHHHSSSEEEEESSTS-----------TTTTEE----EESSHH
T ss_pred ChhhcCCCCCCEEEEeccccc---------chhHHHHHhhcCCCEEEEECCCC-----------ccEEEE----EcCCHH
Confidence 688999999999999864220 00010001135699999999874 244543 132222
Q ss_pred ccccCC-cccccCcceEEeeccCCCCceEEEEEEC---CceeEEeeccCCCCCCceee----c--CCCCceeeEeeCCHH
Q psy10158 226 SVYSPE-SRVRKSGSFIYEDFMPTDGTDVKVYTVG---PDYAHAEARKSPALDGKVER----D--SEGKEIRYPVILSNA 295 (1266)
Q Consensus 226 S~y~p~-s~vr~~gSyIYEEFI~t~GtDVKVYtVG---p~~vhAe~RKSPvvDG~VRR----N--~hgKEiRypV~LT~e 295 (1266)
..-..- ...+-+...|.|||| .|+++-|-++| ..+...++...+ ++.+.- . -...+...|..|+++
T Consensus 57 el~~ai~~~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~~ 132 (203)
T PF07478_consen 57 ELEEAIEKAFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSEE 132 (203)
T ss_dssp HHHHHHHHHTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-HH
T ss_pred HHHHHHHHHhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCHH
Confidence 211111 122457789999999 79999999999 666666666654 233321 1 133445556667664
Q ss_pred ----HHHHHHHHHHHhCC-ccceeeEEee-CCCeEEEeecCc
Q psy10158 296 ----EKLISRKVCLAFKQ-TVCGFDLLRA-NGKSFVCDVNGF 331 (1266)
Q Consensus 296 ----EK~IA~kaakAFGq-~VCGfDLLRs-~ggsyVcDVNGw 331 (1266)
=+++|.+|.+++|. .+|=||+.=. +|.+||+|||.-
T Consensus 133 ~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~ 174 (203)
T PF07478_consen 133 LQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTI 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCc
Confidence 35789999999997 7899998876 788999999965
No 69
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.21 E-value=4.9e-06 Score=96.80 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=98.9
Q ss_pred chhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCC
Q psy10158 133 MQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGG 212 (1266)
Q Consensus 133 ~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~Gg 212 (1266)
.-.+.+||..+-++|+++|||+|++..+... .+..+++. .+..|+|+||..+. .|.
T Consensus 102 aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~~~~----~~~~PvVVKp~~~~-----------~gk 157 (426)
T PRK13789 102 CAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLSYLE----SEMLPIVIKADGLA-----------AGK 157 (426)
T ss_pred HHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHHHHH----hcCCCEEEEeCCCC-----------CCC
Confidence 3346689999999999999999998877531 11222232 13489999999776 477
Q ss_pred chhhhhcccCCccccccC---Ccccc-cCcceEEeeccCCCCceEEEEEE--CCceeE---EeeccCCCCCCceeecCCC
Q psy10158 213 GSQRLFRKIGSRSSVYSP---ESRVR-KSGSFIYEDFMPTDGTDVKVYTV--GPDYAH---AEARKSPALDGKVERDSEG 283 (1266)
Q Consensus 213 Gv~~LfrKignkSS~y~p---~s~vr-~~gSyIYEEFI~t~GtDVKVYtV--Gp~~vh---Ae~RKSPvvDG~VRRN~hg 283 (1266)
|+. +.+........+.- ..... .+..+|.||||. |.-+=|.++ |..+.. +...| ...||+-.=|+.|
T Consensus 158 GV~-vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~Sv~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tgg 233 (426)
T PRK13789 158 GVT-VATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEASIFAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGG 233 (426)
T ss_pred cEE-EECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEEEEEEEECCCEEEEccceEecc-cccCCCCCCCCCC
Confidence 774 43321100000000 00011 134799999997 444444443 333221 22112 2246766667766
Q ss_pred CceeeEee-CCHHH-----HHHHHHHHHHh---C---CccceeeEEeeCCC-eEEEeecCc
Q psy10158 284 KEIRYPVI-LSNAE-----KLISRKVCLAF---K---QTVCGFDLLRANGK-SFVCDVNGF 331 (1266)
Q Consensus 284 KEiRypV~-LT~eE-----K~IA~kaakAF---G---q~VCGfDLLRs~gg-syVcDVNGw 331 (1266)
=+.-.|.. ++++. ++|+.++.+++ | ..|..+|++-.+++ +||+|+|-=
T Consensus 234 mg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R 294 (426)
T PRK13789 234 MGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCR 294 (426)
T ss_pred ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecC
Confidence 66666765 46532 23555556555 5 35667788877555 999999963
No 70
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.14 E-value=3.5e-06 Score=89.75 Aligned_cols=127 Identities=24% Similarity=0.401 Sum_probs=87.5
Q ss_pred cCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcce-EEeeccCCCCceEEEEEECCceeEE
Q psy10158 187 NKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSF-IYEDFMPTDGTDVKVYTVGPDYAHA 265 (1266)
Q Consensus 187 ~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSy-IYEEFI~t~GtDVKVYtVGp~~vhA 265 (1266)
.-|+|+|--.+- +|-|-. |+.|+...=+-.+.+....+| -.|.||.. --||||--+|++| -|
T Consensus 50 ~fPvVvKvG~~h-----------~G~GKv----kv~n~~~~qDi~sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA 112 (203)
T PF02750_consen 50 RFPVVVKVGHAH-----------AGMGKV----KVDNQQDFQDIASLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KA 112 (203)
T ss_dssp SSSEEEEESS-S-----------TTTTEE----EE-SHHHHHHHHHHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EE
T ss_pred CCCEEEEEcccc-----------CceeEE----EEccHHHHHHHHHHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EE
Confidence 479999987665 466643 455555333333444433344 56888865 4899999999997 89
Q ss_pred eeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHh-CCccceeeEEee-CCCeEEEeecCcee
Q psy10158 266 EARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAF-KQTVCGFDLLRA-NGKSFVCDVNGFSF 333 (1266)
Q Consensus 266 e~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAF-Gq~VCGfDLLRs-~ggsyVcDVNGwSF 333 (1266)
+.|+| ..|--..|+ |-.+-..|.+|+..|+..-.+++.| |++|||+|.|-+ .|+=|++|||+=|+
T Consensus 113 ~~R~s--is~nWK~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 113 YMRTS--ISGNWKANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp EEEEE--SSSTSSTTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred EEEcc--ccccccccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 99999 367777775 5677788999999999999999999 999999999999 68999999998655
No 71
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.13 E-value=9.8e-06 Score=103.52 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=119.3
Q ss_pred ccceeeccccCCCcHHHH-----HHHHhhcCC-ccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccc
Q psy10158 99 IVDCLISFHSKGFPLEKA-----IKYANLRKP-FVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHEL 172 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KA-----i~Y~klrkp-~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l 172 (1266)
.+|++|+.++-..++.-| ...++..+. ++-.+..+..+.+||.+..+.|.++|||+|++..+....
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 152 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVE-------- 152 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHH--------
Confidence 468899887654454222 234566664 555889999999999999999999999999998885311
Q ss_pred cccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC--cccc--cCcceEEeeccCC
Q psy10158 173 VESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE--SRVR--KSGSFIYEDFMPT 248 (1266)
Q Consensus 173 ~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~--s~vr--~~gSyIYEEFI~t 248 (1266)
+..+.+ ..+..|+|+||..|. .|.|+. +.+ |.. ++..- .... ..+.+|.||||+-
T Consensus 153 -e~~~~~----~~igyPvIVKP~~g~-----------gg~Gv~-iv~---~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 153 -EALAAA----KEIGYPVIVRPAFTL-----------GGTGGG-IAY---NRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred -HHHHHH----HHhCCCeEEECCCCC-----------CCCCeE-EEC---CHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 111111 123489999999886 255553 222 222 11100 0111 2257999999973
Q ss_pred CCceEEEEEECC---cee--EEeeccCCCCCCceeecCCCCcee--eEe-eCCHHHH----HHHHHHHHHhCCc-cceee
Q psy10158 249 DGTDVKVYTVGP---DYA--HAEARKSPALDGKVERDSEGKEIR--YPV-ILSNAEK----LISRKVCLAFKQT-VCGFD 315 (1266)
Q Consensus 249 ~GtDVKVYtVGp---~~v--hAe~RKSPvvDG~VRRN~hgKEiR--ypV-~LT~eEK----~IA~kaakAFGq~-VCGfD 315 (1266)
. ..+=+-+++. +.+ ..+.+.-| .| .|.+++. .|. .|++++. ++|.++++++|.. +|.||
T Consensus 212 ~-~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 W-KEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred c-eEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 1 3333333321 222 23344333 12 2333332 343 3787554 5888999999985 78899
Q ss_pred EEee--CCCeEEEeecC
Q psy10158 316 LLRA--NGKSFVCDVNG 330 (1266)
Q Consensus 316 LLRs--~ggsyVcDVNG 330 (1266)
+.-. +|+.||+|||.
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 8886 46899999994
No 72
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.09 E-value=7.3e-06 Score=97.29 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=109.3
Q ss_pred HHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEec
Q psy10158 116 AIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKP 194 (1266)
Q Consensus 116 Ai~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKp 194 (1266)
..+.++..+ ||+.-+..+..+..||..+.++++++|||+|++..+..+.. .++. +.+. ...|..|+|+||
T Consensus 118 iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~----eel~---~~~~--~~~IGyPvVVKP 188 (493)
T PRK06524 118 TEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSY----DELS---ALAH--GAGLGDDLVVQT 188 (493)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCH----HHHH---HHHH--hccCCCcEEEEE
Confidence 334444444 67789999999999999999999999999999988632211 0010 1111 112458999999
Q ss_pred ccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cccccCcceEEeeccCCCCce--EEEEEECC-ceeEEeeccC
Q psy10158 195 VSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRVRKSGSFIYEDFMPTDGTD--VKVYTVGP-DYAHAEARKS 270 (1266)
Q Consensus 195 v~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~vr~~gSyIYEEFI~t~GtD--VKVYtVGp-~~vhAe~RKS 270 (1266)
..|. .|.|+. ..+ +.. ++..- ..+-.+..+|+|+||. |.- |=|++-+. .+++...+.
T Consensus 189 ~~GG-----------SS~GV~-~Vk---n~e-ELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e- 249 (493)
T PRK06524 189 PYGD-----------SGSTTF-FVR---GQR-DWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTS- 249 (493)
T ss_pred CCCC-----------CCcCEE-EeC---CHH-HHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccc-
Confidence 9886 366663 222 111 11100 0111234579999995 533 33344332 233221111
Q ss_pred CCCCCceeecCCCCc---eeeEeeCCH----HHHHHHHHHHHHhC----CccceeeEEee--CCCeEEEeec
Q psy10158 271 PALDGKVERDSEGKE---IRYPVILSN----AEKLISRKVCLAFK----QTVCGFDLLRA--NGKSFVCDVN 329 (1266)
Q Consensus 271 PvvDG~VRRN~hgKE---iRypV~LT~----eEK~IA~kaakAFG----q~VCGfDLLRs--~ggsyVcDVN 329 (1266)
++-..++. .-.++. ...|..|++ +=+++|.+++++++ ..+++||++.. +|+.|++|||
T Consensus 250 ~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 250 LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 11000121 011222 244777888 56678899999983 68889999987 5789999999
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.03 E-value=1.9e-05 Score=101.06 Aligned_cols=194 Identities=15% Similarity=0.196 Sum_probs=116.7
Q ss_pred ccceeeccccCCCcHHHHHH-----HHhhcCC-ccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccc
Q psy10158 99 IVDCLISFHSKGFPLEKAIK-----YANLRKP-FVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHEL 172 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL~KAi~-----Y~klrkp-~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l 172 (1266)
..|++|+.++....+.-|++ .++..+. ++-.+.....+.+||.+..++|.++|||+|++..+....
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 153 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVE-------- 153 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHH--------
Confidence 46888887764444543331 4455554 445788899999999999999999999999999886411
Q ss_pred cccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC--ccc--ccCcceEEeeccCC
Q psy10158 173 VESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE--SRV--RKSGSFIYEDFMPT 248 (1266)
Q Consensus 173 ~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~--s~v--r~~gSyIYEEFI~t 248 (1266)
+..+.+. .+..|+|+||..|.+ |.|+. +.+ |.. ++..- ..+ ...+.+|.||||+-
T Consensus 154 -e~~~~~~----~igyPvVVKP~~g~g-----------G~Gv~-iv~---~~e-EL~~a~~~~~~~s~~~~vLVEe~I~G 212 (1068)
T PRK12815 154 -EALAFAE----KIGFPIIVRPAYTLG-----------GTGGG-IAE---NLE-ELEQLFKQGLQASPIHQCLLEESIAG 212 (1068)
T ss_pred -HHHHHHH----HcCCCEEEEECcCCC-----------CCceE-EEC---CHH-HHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 1111121 234899999998752 44542 222 222 11100 001 12357999999962
Q ss_pred CCceEEEEEECC---cee--EEeeccCCCCCCceeecCCCCcee--eEe-eCCHHH----HHHHHHHHHHhCC-ccceee
Q psy10158 249 DGTDVKVYTVGP---DYA--HAEARKSPALDGKVERDSEGKEIR--YPV-ILSNAE----KLISRKVCLAFKQ-TVCGFD 315 (1266)
Q Consensus 249 ~GtDVKVYtVGp---~~v--hAe~RKSPvvDG~VRRN~hgKEiR--ypV-~LT~eE----K~IA~kaakAFGq-~VCGfD 315 (1266)
. ..+=|-++.+ +++ .++.+..| .| .|.|+.. .|. .|++++ +++|.++++++|. .+|.||
T Consensus 213 ~-~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~ve 284 (1068)
T PRK12815 213 W-KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQ 284 (1068)
T ss_pred C-eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEE
Confidence 1 3344444432 222 22233222 22 2223222 233 477764 4688999999998 478899
Q ss_pred EEee--CCCeEEEeec
Q psy10158 316 LLRA--NGKSFVCDVN 329 (1266)
Q Consensus 316 LLRs--~ggsyVcDVN 329 (1266)
+.-. .|++||+|||
T Consensus 285 f~l~~~~g~~~ViEIN 300 (1068)
T PRK12815 285 FALDPKSKQYYLIEVN 300 (1068)
T ss_pred EEEECCCCcEEEEEEe
Confidence 8765 3679999999
No 74
>KOG3720|consensus
Probab=98.02 E-value=0.00024 Score=83.01 Aligned_cols=64 Identities=33% Similarity=0.446 Sum_probs=52.2
Q ss_pred CccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccc-cccceEEecCchhHHHHHHHHHHHhhcccCC
Q psy10158 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTF-RHDLKIYASDEGRVQMTAAAFAKGLLALEGE 593 (1266)
Q Consensus 524 GElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~-rhDlKIYSSdEgRVq~TAaaFAkglL~lEge 593 (1266)
|+||..|..|+-+||+.+|+-|=.- .++| -..| +.++.|+|||=-|+.+||++..+||+.-++.
T Consensus 69 GqLT~~G~~Q~~~LG~~LR~rYvr~----~~fL--~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 69 GQLTDRGMEQMFELGRFLRKRYVRY----GNFL--SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhc----cccC--CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 7999999999999999999744432 1243 2233 5699999999999999999999999997644
No 75
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.02 E-value=1.5e-05 Score=103.12 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=114.5
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcC-CccccCccchhhhhHHHHHHHHHHhcCCCCCC-eEEeccCCCCCccccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPR-YAVLDRESPDPVKHELVE 174 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~-tv~~~rd~~~~~~~~l~e 174 (1266)
.+|++|+-+ ||-- ....+.++..+ +|+-++.+...+++||....++|+++|||+|. +..+... .+
T Consensus 73 ~idaIiPG~--gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~---------de 141 (1201)
T TIGR02712 73 GAQAIHPGY--GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL---------DE 141 (1201)
T ss_pred CCCEEEeCC--cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH---------HH
Confidence 367787765 3321 23455666665 56778889999999999999999999999855 5444320 01
Q ss_pred cCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCccc----ccCcceEEeeccCCCC
Q psy10158 175 SEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRV----RKSGSFIYEDFMPTDG 250 (1266)
Q Consensus 175 ~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~v----r~~gSyIYEEFI~t~G 250 (1266)
..+.+. .+..|+|+||..|. .|.|++ +.+....-...|..-... -.+..+|.||||.- |
T Consensus 142 a~~~a~----~igyPvVVKP~~gg-----------GG~GV~-iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g-~ 204 (1201)
T TIGR02712 142 ALEAAK----EIGYPVMLKSTAGG-----------GGIGMQ-KCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN-A 204 (1201)
T ss_pred HHHHHH----hcCCeEEEEECCCC-----------CCCCEE-EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-C
Confidence 111111 23489999999986 355653 332211000000000000 01345899999973 5
Q ss_pred ceEEEEEECC---ceeEEeeccCCCCCCcee-ecCCCCceeeEeeCCHH----HHHHHHHHHHHhCCc-cceeeEEeeC-
Q psy10158 251 TDVKVYTVGP---DYAHAEARKSPALDGKVE-RDSEGKEIRYPVILSNA----EKLISRKVCLAFKQT-VCGFDLLRAN- 320 (1266)
Q Consensus 251 tDVKVYtVGp---~~vhAe~RKSPvvDG~VR-RN~hgKEiRypV~LT~e----EK~IA~kaakAFGq~-VCGfDLLRs~- 320 (1266)
.-|-|.++|+ .+++--.|-. .+. +|..--+..-...|+++ =.++|.++++++|.. ++.||++-..
T Consensus 205 ~eveV~v~~Dg~g~vv~lg~rd~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~ 279 (1201)
T TIGR02712 205 RHVEVQIFGDGKGKVVALGERDC-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEA 279 (1201)
T ss_pred EEEEEEEEECCCCeEEEeeEEEe-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECC
Confidence 6677766653 3444333321 121 22111111111134543 345788889998865 6779999863
Q ss_pred -CCeEEEeecC
Q psy10158 321 -GKSFVCDVNG 330 (1266)
Q Consensus 321 -ggsyVcDVNG 330 (1266)
|++||+|||.
T Consensus 280 ~g~~y~lEVNp 290 (1201)
T TIGR02712 280 RDEFYFLEVNT 290 (1201)
T ss_pred CCCEEEEEEEC
Confidence 7899999995
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.01 E-value=2.2e-05 Score=86.20 Aligned_cols=176 Identities=22% Similarity=0.290 Sum_probs=114.6
Q ss_pred cCCccccCccchhhhhHHHHHHHHHHhcC-CC--CCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccC
Q psy10158 123 RKPFVINNLNMQYDIQDRRKVYALLEKEG-IE--IPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAED 199 (1266)
Q Consensus 123 rkp~~lNdl~~Q~ilrDRr~vlqiL~~~g-Ip--~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~Ged 199 (1266)
++....|. .+.|||.+|+.|.+.. +. +|.|....... ....++.- .+-+.+||..|.
T Consensus 7 ~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~---------~l~~~L~~-----y~~vylKP~~Gs- 66 (262)
T PF14398_consen 7 KGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSFE---------DLREMLNK-----YKSVYLKPDNGS- 66 (262)
T ss_pred CCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCHH---------HHHHHHHH-----CCEEEEEeCCCC-
Confidence 34455554 2479999999999863 55 88887775311 01122211 245889999998
Q ss_pred cceEEEeccCCCCchhhhhcccCCccc------------cccCCc-------ccccCcceEEeeccC--C-CC--ceEEE
Q psy10158 200 HNIYIYYPTSAGGGSQRLFRKIGSRSS------------VYSPES-------RVRKSGSFIYEDFMP--T-DG--TDVKV 255 (1266)
Q Consensus 200 HNI~IYyp~s~GgGv~~LfrKignkSS------------~y~p~s-------~vr~~gSyIYEEFI~--t-~G--tDVKV 255 (1266)
.|.|+.++-+. ++.-. .|.-.. ..-....||.|+.|+ + +| -|+||
T Consensus 67 ----------~G~gI~ri~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~Rv 135 (262)
T PF14398_consen 67 ----------KGKGIIRIEKK-GGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRV 135 (262)
T ss_pred ----------CCccEEEEEEe-CCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEE
Confidence 56676544332 22111 111000 112467999999998 3 67 99999
Q ss_pred EEEC--C---ceeEEeeccCCCCCCceeecCCCCceeeEee--CC---------HHHHH----HHHHHHHHhCC--ccce
Q psy10158 256 YTVG--P---DYAHAEARKSPALDGKVERDSEGKEIRYPVI--LS---------NAEKL----ISRKVCLAFKQ--TVCG 313 (1266)
Q Consensus 256 YtVG--p---~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~--LT---------~eEK~----IA~kaakAFGq--~VCG 313 (1266)
++-= . .+....+|.++ .|.+-.|.++||...++. |. .+=++ +|..+.+.||. .-.|
T Consensus 136 lvqK~~~G~W~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElG 213 (262)
T PF14398_consen 136 LVQKNGSGKWQVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELG 213 (262)
T ss_pred EEEECCCCCEEEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEE
Confidence 9982 2 56788999997 888999999998866551 11 11123 44455556674 6789
Q ss_pred eeEEee-CCCeEEEeecCc
Q psy10158 314 FDLLRA-NGKSFVCDVNGF 331 (1266)
Q Consensus 314 fDLLRs-~ggsyVcDVNGw 331 (1266)
+||-=. +|+..++|||+=
T Consensus 214 iDl~iD~~g~iWliEvN~k 232 (262)
T PF14398_consen 214 IDLGIDKNGKIWLIEVNSK 232 (262)
T ss_pred EEEEEcCCCCEEEEEEeCC
Confidence 999776 899999999984
No 77
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.78 E-value=0.00011 Score=87.32 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=112.9
Q ss_pred cceeeccccCCCcHH-HHHHHHhhcCC-ccccCccchhhhhHHHHHHHHHHhcCCCCC-CeEEeccCCCCCccccccccC
Q psy10158 100 VDCLISFHSKGFPLE-KAIKYANLRKP-FVINNLNMQYDIQDRRKVYALLEKEGIEIP-RYAVLDRESPDPVKHELVESE 176 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~-KAi~Y~klrkp-~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P-~tv~~~rd~~~~~~~~l~e~~ 176 (1266)
.|++|+...+ |+. .+...++..+. +.-++..+-.+.+||..+-++|+++|||+| .+..+.. ..+..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~~ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYD---------VEEAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCC---------HHHHH
Confidence 4566654332 442 33334444443 344777777788999999999999999997 5655532 11122
Q ss_pred CeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccc----cc-----c--CC-----c-ccccCcc
Q psy10158 177 DHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSS----VY-----S--PE-----S-RVRKSGS 239 (1266)
Q Consensus 177 D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS----~y-----~--p~-----s-~vr~~gS 239 (1266)
+++.. + .|+|+||..+. .|.|+. +.. +... ++ . .+ . .-..+..
T Consensus 139 ~~~~~----~-~PvVVKP~~~a-----------ggkGV~-iv~---~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~ 198 (486)
T PRK05784 139 KFIEY----G-GSVAIKPARQA-----------GGKGVK-VIA---DLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPK 198 (486)
T ss_pred HHHhh----c-CCEEEeeCCCC-----------CCCCEE-EEC---ChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCe
Confidence 22311 2 49999999887 577874 433 2220 00 0 00 0 1123567
Q ss_pred eEEeeccCCCCceEEEEEECCceeE-EeeccC-CCCCCceeecCCCCceeeE----ee-CCHHH----HHHHHHHHHHhC
Q psy10158 240 FIYEDFMPTDGTDVKVYTVGPDYAH-AEARKS-PALDGKVERDSEGKEIRYP----VI-LSNAE----KLISRKVCLAFK 308 (1266)
Q Consensus 240 yIYEEFI~t~GtDVKVYtVGp~~vh-Ae~RKS-PvvDG~VRRN~hgKEiRyp----V~-LT~eE----K~IA~kaakAFG 308 (1266)
+|.||||.-.--.|=+++-|..+.. ...+.- .+.||..--|+.|=+.=.| +. +++++ .+++.++.++++
T Consensus 199 VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~ 278 (486)
T PRK05784 199 ILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIY 278 (486)
T ss_pred EEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999822234445544544331 111111 1236666667666554333 32 34433 245777776776
Q ss_pred Cc-------cceeeEEee-CCCeEEEeec
Q psy10158 309 QT-------VCGFDLLRA-NGKSFVCDVN 329 (1266)
Q Consensus 309 q~-------VCGfDLLRs-~ggsyVcDVN 329 (1266)
.. ++-++|.-+ ++||+|+|+|
T Consensus 279 ~~~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 279 KETGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred HhcCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 43 344578888 8999999999
No 78
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=97.70 E-value=0.0034 Score=73.80 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=52.1
Q ss_pred CCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhccc-ccccceEEecCchhHHHHHHHHHHHhhcccC
Q psy10158 523 GGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHST-FRHDLKIYASDEGRVQMTAAAFAKGLLALEG 592 (1266)
Q Consensus 523 GGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst-~rhDlKIYSSdEgRVq~TAaaFAkglL~lEg 592 (1266)
.|+||.-|+.|-..+|+.||.+| .. .|||--+-- --.++.+||++-.|.+.||++|+.||.--.+
T Consensus 68 ~G~LT~~G~~~~~~~G~~~r~~~-~~----~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 68 GGQLTTKGGVLEVYMGHYMREWL-AQ----QGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-HH----cCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 49999999999999999999877 32 477632110 1248999999999999999999999997544
No 79
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.51 E-value=0.001 Score=76.84 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=95.5
Q ss_pred CccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccC
Q psy10158 130 NLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTS 209 (1266)
Q Consensus 130 dl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s 209 (1266)
+-.+....+||.+..+.|+++|||+|+++ .. .++ +..|+|+||..|.+
T Consensus 114 n~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~------------~~~--------i~~PvIVKp~~g~g---------- 161 (358)
T PRK13278 114 NREILRWEADRDKERKLLEEAGIRIPRKY--ES------------PED--------IDRPVIVKLPGAKG---------- 161 (358)
T ss_pred CHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC------------HHH--------cCCCEEEEeCCCCC----------
Confidence 33455667889999999999999999962 11 011 23799999988762
Q ss_pred CCCchhhhhcccCCccccccCCc-------ccccCcceEEeeccCCCCceEEEEEE---CCceeEEeeccCCC-CCCcee
Q psy10158 210 AGGGSQRLFRKIGSRSSVYSPES-------RVRKSGSFIYEDFMPTDGTDVKVYTV---GPDYAHAEARKSPA-LDGKVE 278 (1266)
Q Consensus 210 ~GgGv~~LfrKignkSS~y~p~s-------~vr~~gSyIYEEFI~t~GtDVKVYtV---Gp~~vhAe~RKSPv-vDG~VR 278 (1266)
|.|+. +.+ +.+ ++.... .+.....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.||
T Consensus 162 -gkGv~-i~~---s~~-El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r 235 (358)
T PRK13278 162 -GRGYF-IAK---SPE-EFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVR 235 (358)
T ss_pred -CCCeE-EeC---CHH-HHHHHHHHHHhccccCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccceee
Confidence 44442 222 111 111000 12236789999999732234446654 66566676665544 577776
Q ss_pred e--c---CCCCceeeEee------CC----HHHHHHHHHHHHH----h-CCccc--eeeEEee-CCCeEEEeecCc
Q psy10158 279 R--D---SEGKEIRYPVI------LS----NAEKLISRKVCLA----F-KQTVC--GFDLLRA-NGKSFVCDVNGF 331 (1266)
Q Consensus 279 R--N---~hgKEiRypV~------LT----~eEK~IA~kaakA----F-Gq~VC--GfDLLRs-~ggsyVcDVNGw 331 (1266)
- . ..+.+-.|++. +. ++=.++|.+++++ + +..+| .+|.... ++..+|+|||+=
T Consensus 236 ~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R 311 (358)
T PRK13278 236 IPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISAR 311 (358)
T ss_pred ccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCc
Confidence 2 1 12223333332 22 3344566666666 5 55444 4566666 556799999874
No 80
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.36 E-value=0.00051 Score=81.34 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=129.3
Q ss_pred ccceeeccccCCCcH--HHHHHHHhhcCCccccCcc--chhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccc
Q psy10158 99 IVDCLISFHSKGFPL--EKAIKYANLRKPFVINNLN--MQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVE 174 (1266)
Q Consensus 99 ~cD~LIsFfS~GfPL--~KAi~Y~klrkp~~lNdl~--~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e 174 (1266)
.+|++++.|+ |-- .+..+-|...+ +++.... ....+.||...=++++++|||+|.....- .. ...+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~--~~-----~~ee 143 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGA--VA-----DNEE 143 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCC--cC-----CHHH
Confidence 5889999886 544 56667777767 6666554 44578899999999999999999987321 00 0112
Q ss_pred cCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCccc-------ccCcceEEeeccC
Q psy10158 175 SEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRV-------RKSGSFIYEDFMP 247 (1266)
Q Consensus 175 ~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~v-------r~~gSyIYEEFI~ 247 (1266)
.......-| .|+|+||..|- -|.|+ ++.+.. +.....-... --++.++.|+||.
T Consensus 144 ~~~~a~~iG----yPVivKa~~Gg-----------Gg~G~-r~v~~~---~el~~a~~~~~~ea~~~fg~~~v~iEk~i~ 204 (449)
T COG0439 144 ALAIAEEIG----YPVIVKAAAGG-----------GGRGM-RVVRNE---EELEAAFEAARGEAEAAFGNPRVYLEKFIE 204 (449)
T ss_pred HHHHHHHcC----CCEEEEECCCC-----------CcccE-EEECCH---HHHHHHHHHHHHHHHHhcCCCcEEeeeecc
Confidence 222233333 99999999997 36677 476643 2222211111 1477799999998
Q ss_pred CCCceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHHH----HHHHHHHHhCCccce-eeEEee
Q psy10158 248 TDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEKL----ISRKVCLAFKQTVCG-FDLLRA 319 (1266)
Q Consensus 248 t~GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~----IA~kaakAFGq~VCG-fDLLRs 319 (1266)
. -+-|=+-+.|+ .++|.-.|-.. .=||+-.=.|..-...|+++-++ .|.+++++.|-.-|| |++|-.
T Consensus 205 ~-~rhievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~ 279 (449)
T COG0439 205 G-PRHIEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYD 279 (449)
T ss_pred C-CceEEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe
Confidence 4 23444555555 45888888742 13455544566555567765554 467888888877777 788888
Q ss_pred -CCCeEEEeec
Q psy10158 320 -NGKSFVCDVN 329 (1266)
Q Consensus 320 -~ggsyVcDVN 329 (1266)
+|++|++|+|
T Consensus 280 ~~~~~yfiEmN 290 (449)
T COG0439 280 SNGEFYFIEMN 290 (449)
T ss_pred CCCCEEEEEEe
Confidence 5999999999
No 81
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=97.34 E-value=0.00035 Score=67.53 Aligned_cols=52 Identities=38% Similarity=0.411 Sum_probs=44.8
Q ss_pred EecCCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhh
Q psy10158 520 LKWGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLL 588 (1266)
Q Consensus 520 lKWGGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL 588 (1266)
-.+++.||+.|+.||+.+|+.|+.+|+ .-..||||+-.||+.||++|++++.
T Consensus 20 ~~~d~~Lt~~G~~qa~~l~~~l~~~~~-----------------~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 20 GWGDGPLTEKGRQQARELGKALRERYI-----------------KFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHhCC-----------------CCCEEEECChHHHHHHHHHHHHHhc
Confidence 357899999999999999999996442 1346999999999999999999885
No 82
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.12 E-value=0.0013 Score=75.26 Aligned_cols=152 Identities=20% Similarity=0.344 Sum_probs=99.8
Q ss_pred cCcc-chhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEec
Q psy10158 129 NNLN-MQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYP 207 (1266)
Q Consensus 129 Ndl~-~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp 207 (1266)
|+-. ....+-.|.+-|..|...|.|.|.+--+. .+..+ .+|.|+||+.|.
T Consensus 110 n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e----------------~~~~g----ekt~IlKPv~Ga--------- 160 (389)
T COG2232 110 NEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE----------------PLEEG----EKTLILKPVSGA--------- 160 (389)
T ss_pred CCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------------hhhhc----ceeeEEeeccCC---------
Confidence 4443 55566779999999999999988653321 11122 489999999995
Q ss_pred cCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC---------CCceEEEEEECCceeEEeeccCCCCCCcee
Q psy10158 208 TSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT---------DGTDVKVYTVGPDYAHAEARKSPALDGKVE 278 (1266)
Q Consensus 208 ~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t---------~GtDVKVYtVGp~~vhAe~RKSPvvDG~VR 278 (1266)
||. ++.+. ++-+.. -.-+|.||||+- +|.|....+|..+++- --|-. -+-|+
T Consensus 161 ----GG~---~el~~-----~~Ee~~---~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~-~~~~~---~~~f~ 221 (389)
T COG2232 161 ----GGL---VELVK-----FDEEDP---PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID-GLRGE---YSQFV 221 (389)
T ss_pred ----Cce---eeecc-----cccccC---CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec-ccccc---cccce
Confidence 332 23221 111111 177899999972 5788888888888765 11111 11111
Q ss_pred ecCCCCceeeEeeCCHHHHHHHHHHHHHhCCc-cceeeEEeeCCCeEEEeecC
Q psy10158 279 RDSEGKEIRYPVILSNAEKLISRKVCLAFKQT-VCGFDLLRANGKSFVCDVNG 330 (1266)
Q Consensus 279 RN~hgKEiRypV~LT~eEK~IA~kaakAFGq~-VCGfDLLRs~ggsyVcDVNG 330 (1266)
--|-=+-+++.+-++-..+|..+..-||+. --|||+|-...||||+|||=
T Consensus 222 --Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNP 272 (389)
T COG2232 222 --YKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNP 272 (389)
T ss_pred --eccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEecC
Confidence 013334455555556677999999999984 67999999999999999994
No 83
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.87 E-value=0.0044 Score=72.02 Aligned_cols=163 Identities=20% Similarity=0.209 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCC--CCchh
Q psy10158 138 QDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSA--GGGSQ 215 (1266)
Q Consensus 138 rDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~--GgGv~ 215 (1266)
+|++.-|.+|.++||++|++.-.. ..|..|+|+||.+|. . |.|.
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~p----------------------~eId~PVIVKp~~as-----------G~~srG~- 170 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKDP----------------------EEIDRPVIVKLPEAK-----------RRLERGF- 170 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecCc----------------------cccCccEEEEECCCC-----------CccccCe-
Confidence 568889999999999999998721 023489999999997 2 2333
Q ss_pred hhhcccCCccccccCCc-------cc--ccCcceEEeeccCCCCceEEEEEE--CC--ceeEEeeccCCCCCCceee---
Q psy10158 216 RLFRKIGSRSSVYSPES-------RV--RKSGSFIYEDFMPTDGTDVKVYTV--GP--DYAHAEARKSPALDGKVER--- 279 (1266)
Q Consensus 216 ~LfrKignkSS~y~p~s-------~v--r~~gSyIYEEFI~t~GtDVKVYtV--Gp--~~vhAe~RKSPvvDG~VRR--- 279 (1266)
| ++.|..- |.... .+ .....+|.||||.-.--.+-+|.. -+ .++..-.|----+||.+|-
T Consensus 171 --f-~a~s~eE-l~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~ 246 (366)
T PRK13277 171 --F-TASSYED-FYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAP 246 (366)
T ss_pred --E-eeCCHHH-HHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChh
Confidence 2 2222221 21110 11 122466899999732244446654 33 4555555533236887662
Q ss_pred ----------cCCCCceeeEeeCC----HHHHHHHHHHHHHhCC-----ccc--eeeEEee-CCCeEEEeecCceecccC
Q psy10158 280 ----------DSEGKEIRYPVILS----NAEKLISRKVCLAFKQ-----TVC--GFDLLRA-NGKSFVCDVNGFSFVKNS 337 (1266)
Q Consensus 280 ----------N~hgKEiRypV~LT----~eEK~IA~kaakAFGq-----~VC--GfDLLRs-~ggsyVcDVNGwSFVK~n 337 (1266)
...-|+ .++.++ ++=.+++.+++++++. .++ .+|.... ++..||+|||. -|+-+.
T Consensus 247 ~ql~~~~~p~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp-R~gGGt 323 (366)
T PRK13277 247 QQLKLNEEPRYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP-RIGGGT 323 (366)
T ss_pred hhhhcccCCceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC-CcCCCc
Confidence 111122 233333 3445677888899883 222 3555555 48899999984 455544
Q ss_pred chhh
Q psy10158 338 NKYY 341 (1266)
Q Consensus 338 ~kYY 341 (1266)
+-||
T Consensus 324 nl~~ 327 (366)
T PRK13277 324 NVYM 327 (366)
T ss_pred ccee
Confidence 4444
No 84
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.81 E-value=0.00033 Score=75.25 Aligned_cols=164 Identities=19% Similarity=0.288 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhh
Q psy10158 139 DRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLF 218 (1266)
Q Consensus 139 DRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~Lf 218 (1266)
||.++.+++++.|||+|.....--+. ..+..+... .+..|+++||..|- -|.|++ ++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~-------~eea~~~a~----~iGyPVliKas~gg-----------GG~gm~-iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISS-------VEEALEFAE----EIGYPVLIKASAGG-----------GGRGMR-IV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSS-------HHHHHHHHH----HH-SSEEEEETTSS-----------TTTSEE-EE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCC-------HHHHHHHHH----hcCCceEEeecccc-----------cccccc-cc
Confidence 78999999999999999887762110 111111111 23499999999986 244553 44
Q ss_pred cccCCccccccCCcccc----cCcceEEeeccCC-CCceEEEEEECC-ceeEEeeccCCCCCCceeecCCCC--ceeeEe
Q psy10158 219 RKIGSRSSVYSPESRVR----KSGSFIYEDFMPT-DGTDVKVYTVGP-DYAHAEARKSPALDGKVERDSEGK--EIRYPV 290 (1266)
Q Consensus 219 rKignkSS~y~p~s~vr----~~gSyIYEEFI~t-~GtDVKVYtVGp-~~vhAe~RKSPvvDG~VRRN~hgK--EiRypV 290 (1266)
.....-.+.+......- .++.++.|+|+.. .--+|-|..=|. +++|.-.|-.- ..| -+|+ ++.=+.
T Consensus 58 ~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P~~ 131 (211)
T PF02786_consen 58 HNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAPAQ 131 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES-S
T ss_pred cchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEeecc
Confidence 43211111111000111 2788999999984 434444433322 35555555541 222 2233 344455
Q ss_pred eCCHHHHH----HHHHHHHHhCC-ccceeeEEee--CCCeEEEeecCc
Q psy10158 291 ILSNAEKL----ISRKVCLAFKQ-TVCGFDLLRA--NGKSFVCDVNGF 331 (1266)
Q Consensus 291 ~LT~eEK~----IA~kaakAFGq-~VCGfDLLRs--~ggsyVcDVNGw 331 (1266)
.||+++++ +|.++|+++|. .+|-|-+|-. ++..||+|||=.
T Consensus 132 ~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 132 TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 79987754 78999999986 4788899998 799999999954
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0087 Score=68.45 Aligned_cols=213 Identities=26% Similarity=0.350 Sum_probs=131.7
Q ss_pred EEEEecCCccCChhHH-------------HHHHHHhhcCcEEEEEecccccccccccccccceeeccccCCCcH---HHH
Q psy10158 53 VGVCAMAKKSQSKPMK-------------EILTRLEEFEFIKMIVFSEETIQKPVDEWPIVDCLISFHSKGFPL---EKA 116 (1266)
Q Consensus 53 iGVCAMd~Ka~SkPMr-------------~IL~RL~~~g~f~viiF~dkvILe~vE~WP~cD~LIsFfS~GfPL---~KA 116 (1266)
+=|.|.|+=+....|+ +-|..+++...+|.||=.=+-| ..|.|+-+-..||.+ .+|
T Consensus 36 ~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI--------~td~L~elE~~G~~VVP~ArA 107 (394)
T COG0027 36 VEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI--------ATDALVELEEEGYTVVPNARA 107 (394)
T ss_pred CEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh--------hHHHHHHHHhCCceEccchHH
Confidence 3477888888888886 5677777777888777432222 246666666778765 455
Q ss_pred HHHHhhcCCccccCccchhhhhH--HHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEec
Q psy10158 117 IKYANLRKPFVINNLNMQYDIQD--RRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKP 194 (1266)
Q Consensus 117 i~Y~klrkp~~lNdl~~Q~ilrD--Rr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKp 194 (1266)
-.+.-. |+ ||++-+-| |+||-+|-|++. +.|..+..+- |..|.|+||
T Consensus 108 t~ltMn---------------RegiRrlAAeeL---glpTs~Y~fa~s---------~~e~~~a~~~----iGfPcvvKP 156 (394)
T COG0027 108 TKLTMN---------------REGIRRLAAEEL---GLPTSKYRFADS---------LEELRAAVEK----IGFPCVVKP 156 (394)
T ss_pred HHhhhc---------------HHHHHHHHHHHh---CCCCcccccccc---------HHHHHHHHHH----cCCCeeccc
Confidence 444411 22 55555555 999999999974 2222233333 349999999
Q ss_pred ccccCcceEEEeccCCCCchhhhhcccCCccccccCC-cccc-cCcceEEeeccCCCC--ceEEEEEECCc--eeEEeec
Q psy10158 195 VSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SRVR-KSGSFIYEDFMPTDG--TDVKVYTVGPD--YAHAEAR 268 (1266)
Q Consensus 195 v~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~-s~vr-~~gSyIYEEFI~t~G--tDVKVYtVGp~--~vhAe~R 268 (1266)
+=++ .|.|. -+.++..+-..-++-- .--| ..+..|+|+||+-|= |=+-|=.+++. ||+-.--
T Consensus 157 vMSS-----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGH 224 (394)
T COG0027 157 VMSS-----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGH 224 (394)
T ss_pred cccc-----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCccc
Confidence 9887 68886 4777654333322211 1112 578899999999532 44444444444 5543222
Q ss_pred cCCCCCCceeecCCCCceeeEeeCCHH----HHHHHHHHHHHhC-CccceeeEEeeCCCeE
Q psy10158 269 KSPALDGKVERDSEGKEIRYPVILSNA----EKLISRKVCLAFK-QTVCGFDLLRANGKSF 324 (1266)
Q Consensus 269 KSPvvDG~VRRN~hgKEiRypV~LT~e----EK~IA~kaakAFG-q~VCGfDLLRs~ggsy 324 (1266)
+- .||+. -|.-+|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|
T Consensus 225 rq--~dgdY------~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~ 277 (394)
T COG0027 225 RQ--EDGDY------RESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVI 277 (394)
T ss_pred cc--CCCCh------hcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEE
Confidence 22 15555 678889999984 4567888888885 6788888744443333
No 86
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.10 E-value=0.038 Score=64.99 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=112.6
Q ss_pred cceeeccccCCCcHHHHHHHHhh-----cC-CccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCcccccc
Q psy10158 100 VDCLISFHSKGFPLEKAIKYANL-----RK-PFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELV 173 (1266)
Q Consensus 100 cD~LIsFfS~GfPL~KAi~Y~kl-----rk-p~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~ 173 (1266)
.|++++-++-..+|.-|++--+. .+ +.+.++.++..+..||++..+.+.++|+|+|.. +++. ..
T Consensus 71 ~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P~~-~~~~---------~~ 140 (400)
T COG0458 71 PDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSR-IAHS---------VE 140 (400)
T ss_pred cceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCCcc-cccc---------HH
Confidence 39999999999999655554432 23 567799999999999999999999999999922 2221 22
Q ss_pred ccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCcccccc-CCcccc--cCcceEEeeccCCCC
Q psy10158 174 ESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYS-PESRVR--KSGSFIYEDFMPTDG 250 (1266)
Q Consensus 174 e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~-p~s~vr--~~gSyIYEEFI~t~G 250 (1266)
+..+.+..-| .|+|+||-.|. -|.|+. .++. ++..-. ....++ .-...+.||||.-..
T Consensus 141 e~~~~~~~ig----~PvIVrP~~~l-----------GG~G~~-i~~n---~eel~~~~~~~l~~s~~~~vl~eesi~G~k 201 (400)
T COG0458 141 EADEIADEIG----YPVIVKPSFGL-----------GGSGGG-IAYN---EEELEEIIEEGLRASPVEEVLIEESIIGWK 201 (400)
T ss_pred HHhhhHhhcC----CCEEEecCcCC-----------CCCcee-EEeC---HHHHHHHHHhccccCccccceeeeeecCce
Confidence 3344444444 99999999987 233553 4442 111100 000111 123556788876422
Q ss_pred --ceEEEEEECCc--eeEEeeccCCCCCCceeecCCCCceeeE---eeCCHHHHHHH----HHHHHHhCCc-cceeeEEe
Q psy10158 251 --TDVKVYTVGPD--YAHAEARKSPALDGKVERDSEGKEIRYP---VILSNAEKLIS----RKVCLAFKQT-VCGFDLLR 318 (1266)
Q Consensus 251 --tDVKVYtVGp~--~vhAe~RKSPvvDG~VRRN~hgKEiRyp---V~LT~eEK~IA----~kaakAFGq~-VCGfDLLR 318 (1266)
+=+.+..--.+ ++-.|.+-=| .| .|-++..+. -.|++.|-++. .++.+++|.. =|-|+.--
T Consensus 202 e~e~ev~rd~~~n~ivvc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av 274 (400)
T COG0458 202 EFEYEVVRDGKDNCIVVCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAV 274 (400)
T ss_pred EEEEEEEEeCCCCEEEEEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEE
Confidence 11111111111 2223444433 22 233443332 24677666554 4778888866 24455544
Q ss_pred eC--CCeEEEeec
Q psy10158 319 AN--GKSFVCDVN 329 (1266)
Q Consensus 319 s~--ggsyVcDVN 329 (1266)
.. +..||+|||
T Consensus 275 ~~~~~~~~viEvN 287 (400)
T COG0458 275 DPGGGELYVIEIN 287 (400)
T ss_pred cCCCceEEEEEec
Confidence 43 468999999
No 87
>KOG3895|consensus
Probab=95.80 E-value=0.0047 Score=71.04 Aligned_cols=180 Identities=21% Similarity=0.310 Sum_probs=128.2
Q ss_pred HHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhc-------CCCCCCeEEeccCCCCCccccccccCCeEEEcCeEec
Q psy10158 115 KAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKE-------GIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFN 187 (1266)
Q Consensus 115 KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~-------gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~ 187 (1266)
-++.|+ +.+.||.+.+.+-+-||--+...|.+. .+|+=.-.+- -.+...+..- .
T Consensus 179 ig~qya---giP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y------------PnHK~m~s~~----t 239 (488)
T KOG3895|consen 179 IGLQYA---GIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY------------PNHKEMLSQP----T 239 (488)
T ss_pred HHHHhc---CCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec------------CCchhhccCC----C
Confidence 455565 568899999999999988887777653 2332111111 1122333333 3
Q ss_pred CCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccc-cCcceEEeeccCCCCceEEEEEECCceeEEe
Q psy10158 188 KPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVR-KSGSFIYEDFMPTDGTDVKVYTVGPDYAHAE 266 (1266)
Q Consensus 188 kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr-~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe 266 (1266)
.|+|+|--.|- +|.|-. |+.|....-+-++.+. .+.-.-.|-||.. --||||--+|.+|-+=|
T Consensus 240 yPvVVkvghah-----------sGmGKi----KV~Nh~dfqDi~svval~~Tyat~epFiDa-KYDiriQKIG~nYKaym 303 (488)
T KOG3895|consen 240 YPVVVKVGHAH-----------SGMGKI----KVENHEDFQDIASVVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYM 303 (488)
T ss_pred CcEEEEecccc-----------ccccee----eecchhhhHhHHHHHHHHhhhhhccccccc-cceeehhhhhhhHHHHh
Confidence 89999998876 688854 5666555545444444 3444457888887 47999999999987665
Q ss_pred eccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHHHhC-CccceeeEEee-CCCeEEEeecCcee
Q psy10158 267 ARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAFK-QTVCGFDLLRA-NGKSFVCDVNGFSF 333 (1266)
Q Consensus 267 ~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaakAFG-q~VCGfDLLRs-~ggsyVcDVNGwSF 333 (1266)
|.| +-|....|+ |-.+-+.|..++..|...-.++..|| ++||.||+|-+ .|+=||+|||+-|.
T Consensus 304 -Rts--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~sm 368 (488)
T KOG3895|consen 304 -RTS--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSM 368 (488)
T ss_pred -hhh--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccccc
Confidence 555 588888886 56666778888899988888888885 89999999999 68999999998553
No 88
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=95.76 E-value=0.01 Score=70.44 Aligned_cols=65 Identities=28% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccc-cccceEEecCchhHHHHHHHHHHHhhcccC
Q psy10158 523 GGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTF-RHDLKIYASDEGRVQMTAAAFAKGLLALEG 592 (1266)
Q Consensus 523 GGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~-rhDlKIYSSdEgRVq~TAaaFAkglL~lEg 592 (1266)
.|+||..|+.|--+||+.||..|=. .|||--+..| ..++.|+|++-.|+++||++|..||.--.|
T Consensus 70 ~GqLT~~G~~~~~~lG~~lR~rY~~-----~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 70 LGWLTPRGGELVTLLGHYQRQRLVA-----DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHh-----cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 4999999999999999999987742 2676322122 457999998888999999999999987554
No 89
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=95.71 E-value=0.014 Score=59.17 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=38.5
Q ss_pred cCCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 522 WGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 522 WGGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
+.-.||..|+.||+.||+.|+. ... | .||||+..|++.||+++++.+
T Consensus 20 ~d~~Lt~~G~~qa~~l~~~l~~---------~~~---------~-~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 20 TDVPLAEKGAEQAAALREKLAD---------VPF---------D-AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred CCCCcChhHHHHHHHHHHHhcC---------CCC---------C-EEEECchHHHHHHHHHHHhhc
Confidence 4458999999999999999972 011 2 599999999999999998753
No 90
>KOG3672|consensus
Probab=95.55 E-value=0.043 Score=64.20 Aligned_cols=70 Identities=29% Similarity=0.302 Sum_probs=53.6
Q ss_pred CccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccCCcCcee
Q psy10158 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPIL 598 (1266)
Q Consensus 524 GElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEgeLtPIl 598 (1266)
|+||..|-.|--.+|..||..|---- +.+ .-|.---.|+-++|+--+|.-.||-||-=+||-- -...||-
T Consensus 167 G~LT~~G~~QhL~~G~~~r~~Y~k~~---lk~-~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~-~~w~~i~ 236 (487)
T KOG3672|consen 167 GMLTAEGALQHLRLGKYFRHRYEKTK---LKA-DPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPR-TFWAPIQ 236 (487)
T ss_pred cceeHHhHHHHHhhhHHHHHHHhhcc---ccC-CccccccceeEEEeccccHHHHHHHHHHHHhcch-hhhheee
Confidence 99999999999999999997775420 111 1344455688899999999999999998777763 3566663
No 91
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=95.46 E-value=0.023 Score=55.27 Aligned_cols=46 Identities=37% Similarity=0.328 Sum_probs=37.0
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
-||..|+.||+.+|+.|.. .. ..--.||+|.-.||+.||+++++++
T Consensus 25 ~Lt~~G~~qA~~~~~~l~~----------~~-------~~~~~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 25 PLTERGREQARQLGEYLAE----------RD-------IQIDVIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp GBEHHHHHHHHHHHHHHHH----------TT-------SSCSEEEEESSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhcccccc----------cc-------cCceEEecCCcchhhhhhchhhccc
Confidence 3999999999999999883 00 0112399999999999999999954
No 92
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=95.24 E-value=0.029 Score=58.52 Aligned_cols=48 Identities=35% Similarity=0.316 Sum_probs=38.9
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhc
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLA 589 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~ 589 (1266)
.||..|+.||+.||+.++. .++ ..-.||||+-.|++.||++.|+.+-.
T Consensus 28 pLt~~G~~QA~~l~~~l~~---------~~~--------~~~~i~sS~l~Ra~~TA~~~a~~~~~ 75 (208)
T COG0406 28 PLTEEGRAQAEALAERLAA---------RDI--------GFDAIYSSPLKRAQQTAEPLAEELGL 75 (208)
T ss_pred CCCHHHHHHHHHHHHHHhh---------cCC--------CCCEEEECchHHHHHHHHHHHHhcCC
Confidence 8999999999999999993 011 12348999999999999999876543
No 93
>PRK03482 phosphoglycerate mutase; Provisional
Probab=95.12 E-value=0.032 Score=58.98 Aligned_cols=43 Identities=35% Similarity=0.443 Sum_probs=36.7
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.+|+.|.. .++ | +||||+-.|++-||+++++.
T Consensus 27 ~Lt~~G~~qA~~~~~~l~~---------~~~---------~-~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 27 PLTAKGEQQAMQVAERAKE---------LGI---------T-HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred CcCHHHHHHHHHHHHHHhc---------CCC---------C-EEEECCcHHHHHHHHHHHHh
Confidence 6999999999999999973 111 2 69999999999999999864
No 94
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=95.08 E-value=0.041 Score=54.19 Aligned_cols=46 Identities=35% Similarity=0.422 Sum_probs=38.7
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.|+.+ + + .--.||||+-.|++.||+++++.+
T Consensus 25 ~Lt~~G~~qa~~~~~~l~~~---------~-------~-~~~~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 25 PLTEKGREQARALGKRLKEL---------G-------I-KFDRIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred CCCHHHHHHHHHHHHHHHhc---------C-------C-CCCEEEECcHHHHHHHHHHHHHhc
Confidence 69999999999999999841 1 1 123699999999999999999887
No 95
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=94.88 E-value=0.041 Score=59.82 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=37.9
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.||+.|+. .++ .+ | +||||+-.|++-||+++++++
T Consensus 14 pLTe~G~~QA~~l~~~L~~---------~~~-----~~--d-~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 14 PLSEKGVQEAREAGKLLKE---------KGF-----RF--D-VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred CCCHHHHHHHHHHHHHHHh---------cCC-----CC--C-EEEECChHHHHHHHHHHHHhc
Confidence 6999999999999999983 111 11 2 699999999999999999765
No 96
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=94.65 E-value=0.049 Score=61.70 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=39.3
Q ss_pred cChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhh
Q psy10158 526 LTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLL 588 (1266)
Q Consensus 526 lThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL 588 (1266)
||..|+.||+.||+.|+.++.. .|..+.-| .||||+=.|++.||++++.++.
T Consensus 126 LTe~G~~QA~~lg~~L~~~~~~----------~~~~~~~d-~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 126 LTELGKEQARITGKYLKEQFGE----------ILVDKKVK-AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc----------ccccCCCC-EEEEcCcHHHHHHHHHHHHhCC
Confidence 9999999999999999953211 01111223 6999999999999999987753
No 97
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=94.48 E-value=0.05 Score=57.07 Aligned_cols=44 Identities=30% Similarity=0.297 Sum_probs=37.1
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.||+.|+. + .+ | .||||+-.|++.||+++++.+
T Consensus 26 ~Lt~~G~~qa~~l~~~l~~-----------~-----~~--~-~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 26 DLDERGREQAAALAERLAD-----------L-----PI--A-AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred CcCHHHHHHHHHHHHHHhc-----------C-----CC--C-EEEeCcHHHHHHHHHHHHHhc
Confidence 5999999999999999983 0 01 2 599999999999999998754
No 98
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=94.31 E-value=0.065 Score=58.93 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=37.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
-||..|+.||+.||+.|+. .++ .+ | .||||+=.|++.||++++..+
T Consensus 26 pLte~G~~QA~~la~~L~~---------~~~-----~~--d-~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 26 DLSEKGVSEAKAAGKLLKE---------EGY-----TF--D-VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred CcCHHHHHHHHHHHHHHHh---------cCC-----CC--C-EEEEcCCHHHHHHHHHHHHHc
Confidence 4999999999999999983 111 11 3 599999999999999997643
No 99
>PRK13463 phosphatase PhoE; Provisional
Probab=94.17 E-value=0.06 Score=56.85 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=36.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.+|+.|+. + .+ | .||||+-.|++-||++++..
T Consensus 28 ~Lt~~G~~Qa~~~~~~l~~-----------~-----~~--~-~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 28 ALTENGILQAKQLGERMKD-----------L-----SI--H-AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred CcCHHHHHHHHHHHHHhcC-----------C-----CC--C-EEEECCcHHHHHHHHHHHhc
Confidence 6999999999999999872 1 11 2 59999999999999999753
No 100
>PRK13462 acid phosphatase; Provisional
Probab=94.11 E-value=0.063 Score=57.17 Aligned_cols=42 Identities=33% Similarity=0.305 Sum_probs=34.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAF 583 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaF 583 (1266)
.||..|+.||+.+|+.++. .+ +.. ..||||+-.|++.||++.
T Consensus 31 pLt~~G~~QA~~l~~~l~~---------~~-------~~~-~~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 31 ELTETGRTQAELAGQALGE---------LE-------LDD-PLVISSPRRRALDTAKLA 72 (203)
T ss_pred CCCHHHHHHHHHHHHHHHh---------CC-------CCC-CEEEECchHHHHHHHHHh
Confidence 5999999999999998873 11 211 159999999999999986
No 101
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=94.06 E-value=0.068 Score=56.01 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=36.6
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.+|+.|+. .. + | +||||+-.|++.||++++++
T Consensus 26 pLt~~G~~Qa~~~~~~l~~---------~~-------~--~-~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 26 PLTARGIEQAQNLHTLLRD---------VP-------F--D-LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred CcCHHHHHHHHHHHHHHhC---------CC-------C--C-EEEECchHHHHHHHHHHHhc
Confidence 4999999999999999983 11 1 2 59999999999999999875
No 102
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=93.96 E-value=0.044 Score=59.09 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCE-EEecccccCcceEEEeccCCCCchhhh
Q psy10158 139 DRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPF-VEKPVSAEDHNIYIYYPTSAGGGSQRL 217 (1266)
Q Consensus 139 DRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPf-VeKpv~GedHNI~IYyp~s~GgGv~~L 217 (1266)
+|.-+=++++++|||++++..... ..+..++|.-.+ .|. |+|+ +|- .+|.||. +
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~---------~~~A~~~l~~~~----~p~~ViKa-dGl----------a~GKGV~-i 56 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTD---------YEEALEYLEEQG----YPYVVIKA-DGL----------AAGKGVV-I 56 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESS---------HHHHHHHHHHHS----SSEEEEEE-SSS----------CTTTSEE-E
T ss_pred CHHHHHHHHHHcCCCCCCeeEECC---------HHHHHHHHHhcC----CCceEEcc-CCC----------CCCCEEE-E
Confidence 466777899999999999888764 223444453333 777 9998 443 2567763 4
Q ss_pred hcccCCcccccc---CCccc-ccCcceEEeeccCCCCceEEEEEECCceeEEe-----eccCCCCCCceeecCCCCceee
Q psy10158 218 FRKIGSRSSVYS---PESRV-RKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAE-----ARKSPALDGKVERDSEGKEIRY 288 (1266)
Q Consensus 218 frKignkSS~y~---p~s~v-r~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe-----~RKSPvvDG~VRRN~hgKEiRy 288 (1266)
+........... .+..+ ..+...|.|||+.-.---+=++|=|..|+.-- .|-- ||+-=-|+-|=|.=.
T Consensus 57 ~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 57 ADDREEALEALREIFVDRKFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp ESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred eCCHHHHHHHHHHhccccccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 432210000000 00011 13578999999973334555666777665322 2333 888888998877777
Q ss_pred EeeC-CHHH-----HHHHHHHHHHh---CCcccee---eEEeeCCCeEEEeec
Q psy10158 289 PVIL-SNAE-----KLISRKVCLAF---KQTVCGF---DLLRANGKSFVCDVN 329 (1266)
Q Consensus 289 pV~L-T~eE-----K~IA~kaakAF---Gq~VCGf---DLLRs~ggsyVcDVN 329 (1266)
|+.. |++. +.|...+.+++ |...+|| .|+=+..||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 5543 22334444444 5666665 666678999999998
No 103
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=93.88 E-value=0.086 Score=57.25 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=36.3
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAK 585 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAk 585 (1266)
.||..|+.||+.+|+.|+. .+ .. | .||||+-.|++.||++|+.
T Consensus 79 pLTerG~~qA~~lg~~L~~---------~~-------~~-d-~I~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 79 GITVKGTQDARELGKAFSA---------DI-------PD-Y-DLYSSNTVRTIQSATWFSA 121 (201)
T ss_pred CCCHHHHHHHHHHHHHHhC---------CC-------CC-C-EEEECCCHHHHHHHHHHhc
Confidence 3999999999999999983 11 11 4 7999999999999999976
No 104
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=93.73 E-value=0.099 Score=56.51 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=37.5
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.||+.|+.. + +.-| .||||+=.|++.||+++++.+
T Consensus 26 ~Lt~~G~~qa~~~~~~l~~~---------~-------~~~d-~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 26 NLTERGVEEAKAAGKKLKEA---------G-------YEFD-IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred CCCHHHHHHHHHHHHHHHhc---------C-------CCCC-EEEEeChHHHHHHHHHHHHhc
Confidence 69999999999999999830 1 1113 599999999999999998753
No 105
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=93.69 E-value=0.093 Score=56.74 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=36.5
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.+|+.++. .++ .+ | .||||+=.|++.||++++++
T Consensus 27 pLt~~G~~QA~~l~~~L~~---------~~~-----~~--d-~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 27 DLSEKGVEEAKKAGRLIKE---------AGL-----EF--D-QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred CcCHHHHHHHHHHHHHHHh---------cCC-----CC--C-EEEECChHHHHHHHHHHHHh
Confidence 5999999999999999883 111 01 3 59999999999999999764
No 106
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=93.54 E-value=0.13 Score=52.62 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.|+. .++ .-| .||||+=.|++.||+++++.+
T Consensus 22 ~Lt~~G~~qa~~~~~~l~~---------~~~-------~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 22 PLTTNGCDESRLVAQWLKG---------QGV-------EIE-RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred CcCHHHHHHHHHHHHHHHh---------CCC-------CCC-EEEECCcHHHHHHHHHHHHHc
Confidence 5999999999999999984 111 112 699999999999999999876
No 107
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=93.52 E-value=0.12 Score=56.91 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=37.7
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.+.. .++ .+ | .||||+=.|++.||++++..+
T Consensus 26 ~Lt~~G~~QA~~la~~L~~---------~~~-----~~--d-~iysSpl~Ra~qTA~ii~~~~ 71 (245)
T TIGR01258 26 KLSEKGQQEAKRAGELLKE---------EGY-----EF--D-VAYTSLLKRAIHTLNIALDEL 71 (245)
T ss_pred CcCHHHHHHHHHHHHHHHh---------cCC-----CC--C-EEEEcChHHHHHHHHHHHHhc
Confidence 8999999999999999983 111 11 2 599999999999999998754
No 108
>PRK01295 phosphoglyceromutase; Provisional
Probab=93.46 E-value=0.12 Score=55.01 Aligned_cols=46 Identities=33% Similarity=0.484 Sum_probs=37.4
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.|+. .++ .+ | .||||+=.|++.||++++..+
T Consensus 28 ~Lt~~G~~qA~~~~~~L~~---------~~~-----~~--d-~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 28 DLTEQGVAEAKAAGRKLKA---------AGL-----KF--D-IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred CcCHHHHHHHHHHHHHHHh---------CCC-----CC--C-EEEeCCcHHHHHHHHHHHHHc
Confidence 5999999999999999983 111 01 2 599999999999999998754
No 109
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.37 Score=56.60 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=101.4
Q ss_pred HHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEec
Q psy10158 115 KAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKP 194 (1266)
Q Consensus 115 KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKp 194 (1266)
.|++++... ..+-=......+++||+.==+.|++.|||+|.+..+..... ..+.+ ..|..|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~e---------l~~~~----~~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEE---------LDAAA----ADLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHH---------HHHHH----HHcCCceEEEe
Confidence 455555554 23334567778899999999999999999999999965211 11222 22348999999
Q ss_pred ccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCC
Q psy10158 195 VSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALD 274 (1266)
Q Consensus 195 v~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvD 274 (1266)
--|- | .|.|.. ..+......+... .....+..|.|+|++=+.+ |-|.++ +-.--+.+-=|+
T Consensus 142 r~gG----Y------DGkGQ~-~i~~~~~~~~~~~---~~~~~~~~vlE~fV~F~~E-iSvi~a--R~~~G~~~~yP~-- 202 (375)
T COG0026 142 RRGG----Y------DGKGQW-RIRSDADLELRAA---GLAEGGVPVLEEFVPFERE-ISVIVA--RSNDGEVAFYPV-- 202 (375)
T ss_pred cccc----c------cCCCeE-EeeCcccchhhHh---hhhccCceeEEeecccceE-EEEEEE--EcCCCCEEEecc--
Confidence 9874 1 488875 4443221111000 1122344499999996432 334333 111122233332
Q ss_pred CceeecCCCCceeeEee----CCH----HHHHHHHHHHHHhCC-ccceeeEEeeCCCe
Q psy10158 275 GKVERDSEGKEIRYPVI----LSN----AEKLISRKVCLAFKQ-TVCGFDLLRANGKS 323 (1266)
Q Consensus 275 G~VRRN~hgKEiRypV~----LT~----eEK~IA~kaakAFGq-~VCGfDLLRs~ggs 323 (1266)
--|.|..++-.-+. +++ +-++||.+++.+++. .|-||.+--..+|-
T Consensus 203 ---~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~ 257 (375)
T COG0026 203 ---AENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGE 257 (375)
T ss_pred ---cceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCc
Confidence 24777777643322 343 456788888887764 46667776666643
No 110
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=93.40 E-value=1 Score=49.87 Aligned_cols=173 Identities=18% Similarity=0.245 Sum_probs=97.7
Q ss_pred hhhhhHHHHHHHHHHhcC--CCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCC
Q psy10158 134 QYDIQDRRKVYALLEKEG--IEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAG 211 (1266)
Q Consensus 134 Q~ilrDRr~vlqiL~~~g--Ip~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~G 211 (1266)
-..+-||..|-..+++.+ ..+|..+-+-.+. + .++-..+..+||+||..|+. .+.|+..++..
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~------------~--~i~~~~Lp~~fViK~nhgsg-~~~i~~dk~~~ 79 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDNP------------D--DIDFDSLPDKFVIKPNHGSG-SNIIVRDKSKL 79 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCCh------------h--hhhhhcCCCCEEEEEecCCC-cEEEEeCCccc
Confidence 346789999999999886 3444444443211 1 12223456899999999986 34445544332
Q ss_pred Cc--hhhhhcc-cCCccccccCCcccc-cCcceEEeeccCC-CC---ceEEEEEECCc--eeEEeeccCCCCCCceeecC
Q psy10158 212 GG--SQRLFRK-IGSRSSVYSPESRVR-KSGSFIYEDFMPT-DG---TDVKVYTVGPD--YAHAEARKSPALDGKVERDS 281 (1266)
Q Consensus 212 gG--v~~LfrK-ignkSS~y~p~s~vr-~~gSyIYEEFI~t-~G---tDVKVYtVGp~--~vhAe~RKSPvvDG~VRRN~ 281 (1266)
-= +++.+++ ....-.....+...+ -.--.|.||||.. +| .|.|+|+.+++ ++....... |.-+++.
T Consensus 80 d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~----~~~~~~~ 155 (239)
T PF14305_consen 80 DIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF----GNHKRNF 155 (239)
T ss_pred CHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC----CCeEEEE
Confidence 21 1111111 111111112222221 2446899999995 55 79999999985 555555432 1112111
Q ss_pred ---------------CCCceeeEeeCCHHHHHHHHHHHHHhCCccceeeEEeeCCCeEEEee
Q psy10158 282 ---------------EGKEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDV 328 (1266)
Q Consensus 282 ---------------hgKEiRypV~LT~eEK~IA~kaakAFGq~VCGfDLLRs~ggsyVcDV 328 (1266)
.+..+..|-.| ++-.++|.++|+-|. .|=|||..++|+.|+-|.
T Consensus 156 yd~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGEl 214 (239)
T PF14305_consen 156 YDRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGEL 214 (239)
T ss_pred ECcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEee
Confidence 12222222222 344566777777654 688999999999999987
No 111
>PRK01112 phosphoglyceromutase; Provisional
Probab=93.24 E-value=0.13 Score=56.08 Aligned_cols=44 Identities=27% Similarity=0.240 Sum_probs=37.0
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.||+.|+. ..+ | .||||+=.|++.||+++++.+
T Consensus 27 ~Lte~G~~Qa~~l~~~L~~---------~~~---------d-~iysSpl~Ra~qTA~~i~~~~ 70 (228)
T PRK01112 27 PLSQQGIAEAIAAGEKIKD---------LPI---------D-CIFTSTLVRSLMTALLAMTNH 70 (228)
T ss_pred CcCHHHHHHHHHHHHHhhc---------CCC---------C-EEEEcCcHHHHHHHHHHHHhh
Confidence 7999999999999999983 011 2 599999999999999998644
No 112
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=93.00 E-value=0.17 Score=50.45 Aligned_cols=50 Identities=38% Similarity=0.367 Sum_probs=39.0
Q ss_pred cCCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 522 WGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 522 WGGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
..-.||..|+.||+.+|+.|+.+ + ...=-.||||+-.|++.||+++++.+
T Consensus 22 ~d~~Lt~~G~~qa~~~a~~l~~~---------~-------~~~~~~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 22 TDSPLTELGRAQAEALGELLASL---------G-------RLRFDVIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---------c-------CCCCCEEEeCchHHHHHHHHHHHHhc
Confidence 34579999999999999999841 0 00122499999999999999997654
No 113
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=92.36 E-value=0.18 Score=58.01 Aligned_cols=45 Identities=40% Similarity=0.381 Sum_probs=37.4
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.|+.. + .+ | .||||+-.|++.||++++.++
T Consensus 197 ~Lt~~G~~QA~~l~~~l~~~--------------~-~~--d-~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 197 ELTEVGRRQAAAAARYLAAR--------------G-GI--D-AVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred CcCHHHHHHHHHHHHHHhcc--------------C-CC--C-EEEECChHHHHHHHHHHHHhc
Confidence 69999999999999999841 0 11 2 599999999999999998754
No 114
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=92.28 E-value=0.24 Score=51.12 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=37.8
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.+|+.|+. .++ .=| .||||+=.|++.||+++++.+
T Consensus 22 pLt~~G~~qa~~~~~~l~~---------~~~-------~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 22 PLTTCGCDESRLMANWLKG---------QKV-------DIE-RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred CcCHHHHHHHHHHHHHHHh---------CCC-------CCC-EEEECCHHHHHHHHHHHHHHh
Confidence 6999999999999999983 111 002 499999999999999998765
No 115
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=92.27 E-value=0.22 Score=53.76 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=37.0
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGL 587 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkgl 587 (1266)
.||..|+.||+.||+.|+. .+. .+ | .||||+=.|++.||+++++.+
T Consensus 27 pLt~~G~~QA~~l~~~L~~---------~~~-----~~--d-~i~sSpL~Ra~~TA~~i~~~~ 72 (228)
T PRK14119 27 NLSEQGINEATRAGEKVRE---------NNI-----AI--D-VAFTSLLTRALDTTHYILTES 72 (228)
T ss_pred CcCHHHHHHHHHHHHHHHh---------cCC-----CC--C-EEEeCccHHHHHHHHHHHHhc
Confidence 5999999999999999883 010 11 2 599999999999999998653
No 116
>KOG1382|consensus
Probab=92.01 E-value=1.4 Score=53.18 Aligned_cols=62 Identities=29% Similarity=0.329 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccCCcCceeeeee
Q psy10158 528 PAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMV 602 (1266)
Q Consensus 528 haGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEgeLtPIlVslV 602 (1266)
..||+-|.++||.|=.+|-. +-|.+ -.-|+++.--||..||++||-||.+-.+-.-| ++.++
T Consensus 135 ~~g~~~a~R~~r~f~~~y~~---------~~n~~---~y~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t-~~~~~ 196 (467)
T KOG1382|consen 135 DEGRMLAKRLARRFPALYYE---------LENPT---VYNINTTASQRVVDSAQAFAYGLFGEDHFNIT-LQTVS 196 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHh---------hcCCc---eEEeeccchHHHHHHHHHHHhhhccccccCCC-ceeee
Confidence 78999999999999754410 01111 23488999999999999999999975565555 54444
No 117
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=91.70 E-value=0.25 Score=53.65 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=35.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAK 585 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAk 585 (1266)
.||..|+.||+.+|+.|+. .++ .+ | .||||+=+|++.||++.+.
T Consensus 27 ~Lt~~G~~qa~~~~~~l~~---------~~~-----~~--~-~i~sSpl~Ra~~TA~~i~~ 70 (230)
T PRK14117 27 DLSEKGTQQAIDAGKLIKE---------AGI-----EF--D-LAFTSVLKRAIKTTNLALE 70 (230)
T ss_pred CcCHHHHHHHHHHHHHHHH---------cCC-----CC--C-EEEECCcHHHHHHHHHHHH
Confidence 5899999999999999983 011 01 2 4999999999999998764
No 118
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=91.70 E-value=0.27 Score=54.44 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=36.6
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.+|+.|+. .+ ++-| .||||+=.|++.||++++..
T Consensus 30 pLTe~G~~QA~~~a~~l~~---------~~-------~~~~-~IysSpl~Ra~qTA~~i~~~ 74 (249)
T PRK14120 30 DLTEKGEAEAKRGGELLAE---------AG-------VLPD-VVYTSLLRRAIRTANLALDA 74 (249)
T ss_pred CcCHHHHHHHHHHHHHHHh---------cC-------CCCC-EEEecChHHHHHHHHHHHHh
Confidence 6999999999999999983 11 1112 59999999999999998764
No 119
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=90.72 E-value=0.32 Score=60.47 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=37.7
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKG 586 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkg 586 (1266)
.||..|+.||+.||+.|+... .+ +...||||+-.||+.||++|++.
T Consensus 443 pLt~~G~~qA~~l~~~l~~~~---------------~~-~~~~V~sSpl~Ra~~TA~~i~~~ 488 (664)
T PTZ00322 443 RLTERGRAYSRALFEYFQKEI---------------ST-TSFTVMSSCAKRCTETVHYFAEE 488 (664)
T ss_pred ccCHHHHHHHHHHHHHHHhcc---------------CC-CCcEEEcCCcHHHHHHHHHHHhc
Confidence 699999999999999998410 01 24589999999999999999764
No 120
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=89.26 E-value=0.54 Score=49.79 Aligned_cols=148 Identities=24% Similarity=0.352 Sum_probs=71.2
Q ss_pred HHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccc-cCcceEEEeccCCCCchhhhhcccCCcc
Q psy10158 147 LEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSA-EDHNIYIYYPTSAGGGSQRLFRKIGSRS 225 (1266)
Q Consensus 147 L~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~G-edHNI~IYyp~s~GgGv~~LfrKignkS 225 (1266)
|++.|||+|.+..+.... +....+ ..|..|+|.|+..| - .|.|.. +.+..
T Consensus 1 l~~~gip~~~~~~i~~~~---------~l~~a~----~~iG~P~vlK~~~~GY-----------DGkGq~-~i~~~---- 51 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE---------DLEEAA----ESIGFPAVLKTRRGGY-----------DGKGQF-VIRSE---- 51 (172)
T ss_dssp HHHTT--B-EEEEESSHH---------HHHHHH----HHHTSSEEEEESSSSC-----------TTTTEE-EESSG----
T ss_pred CcccCCCCCCeEEECCHH---------HHHHHH----HHcCCCEEEEccCcCc-----------CCCccE-EECCH----
Confidence 789999999999996521 111111 12349999996665 4 377864 33321
Q ss_pred ccccCCc-ccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCceeecCCCCceeeEeeCCH----HHHHHH
Q psy10158 226 SVYSPES-RVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSN----AEKLIS 300 (1266)
Q Consensus 226 S~y~p~s-~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~----eEK~IA 300 (1266)
+....-. .+ ..+.+|.|+||+- -..|=|.++-.. .-+.+-=|++. -+.+|-.-...-.|..+++ +=++||
T Consensus 52 ~dl~~a~~~~-~~~~~ilE~~v~f-~~EiSvivaR~~--~G~~~~yp~~e-n~~~~~il~~s~~Pa~i~~~~~~~a~~ia 126 (172)
T PF02222_consen 52 EDLEKAWQEL-GGGPCILEEFVPF-DREISVIVARDQ--DGEIRFYPPVE-NVHRDGILHESIAPARISDEVEEEAKEIA 126 (172)
T ss_dssp GGHHHHHHHT-TTSCEEEEE---E-SEEEEEEEEEET--TSEEEEEEEEE-EEEETTEEEEEEESCSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCcEEEEeccCC-cEEEEEEEEEcC--CCCEEEEcCce-EEEECCEEEEEECCCCCCHHHHHHHHHHH
Confidence 1111000 11 6899999999983 222333322110 00111111110 0111111134455666665 445678
Q ss_pred HHHHHHhCC-ccceeeEEeeC-CC-eEEEee
Q psy10158 301 RKVCLAFKQ-TVCGFDLLRAN-GK-SFVCDV 328 (1266)
Q Consensus 301 ~kaakAFGq-~VCGfDLLRs~-gg-syVcDV 328 (1266)
.+|+.+++- .|-+|.+.-.. |. -||=|+
T Consensus 127 ~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEi 157 (172)
T PF02222_consen 127 RKIAEALDYVGVLAVEFFVTKDGDEVLVNEI 157 (172)
T ss_dssp HHHHHHHTSSEEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHcCcEEEEEEEEEEecCCCEEEEEec
Confidence 888888864 46667777774 43 566554
No 121
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=88.60 E-value=0.72 Score=48.92 Aligned_cols=47 Identities=28% Similarity=0.219 Sum_probs=40.3
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLL 588 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL 588 (1266)
.||..|++||+-.|+.++. .|+ +.=+|++|.-.|+|.||++++..|.
T Consensus 25 ~Lt~~G~~ea~~~a~~L~~---------~~~--------~~D~VL~Spa~Ra~QTae~v~~~~~ 71 (163)
T COG2062 25 PLTERGRKEAELVAAWLAG---------QGV--------EPDLVLVSPAVRARQTAEIVAEHLG 71 (163)
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCC--------CCCEEEeChhHHHHHHHHHHHHhhC
Confidence 5999999999999999994 222 2345999999999999999999988
No 122
>KOG0235|consensus
Probab=86.61 E-value=0.85 Score=50.29 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=40.2
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLL 588 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL 588 (1266)
.||..|+.||+.+|++.+. ..+-.|+= |||+=.|++.||+.+++.+=
T Consensus 31 ~Lte~G~~qA~~~~~~l~~----------------~~~~~~~~-~tS~l~RakqT~~~il~~~~ 77 (214)
T KOG0235|consen 31 PLTEKGEEQAKAAAQRLKD----------------LNIEFDVC-YTSDLKRAKQTAELILEELK 77 (214)
T ss_pred ccChhhHHHHHHHHHHHHh----------------cCCcccEE-ecCHHHHHHHHHHHHHHhhc
Confidence 7999999999999998883 44555765 99999999999999988665
No 123
>PRK06193 hypothetical protein; Provisional
Probab=86.36 E-value=1.2 Score=48.72 Aligned_cols=43 Identities=33% Similarity=0.382 Sum_probs=35.4
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHH
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFA 584 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFA 584 (1266)
.||+.|+.||+.+|+.|+. .++ .=| .||||+=.|++.||+++.
T Consensus 73 pLt~~G~~qA~~l~~~L~~---------~~~-------~~d-~V~sSpl~Ra~qTA~il~ 115 (206)
T PRK06193 73 NLSEEGREQARAIGEAFRA---------LAI-------PVG-KVISSPYCRAWETAQLAF 115 (206)
T ss_pred CCCHHHHHHHHHHHHHHHh---------cCC-------CCC-EEEECCcHHHHHHHHHHh
Confidence 6899999999999999984 121 124 499999999999999864
No 124
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=83.02 E-value=3.3 Score=49.77 Aligned_cols=209 Identities=18% Similarity=0.277 Sum_probs=129.0
Q ss_pred HHHHHHhhcCcEEEEEecccccc-cccccccccceeeccccCCCcH---HHHHHHHhhcCCccccCccchhhhhHHHHHH
Q psy10158 69 EILTRLEEFEFIKMIVFSEETIQ-KPVDEWPIVDCLISFHSKGFPL---EKAIKYANLRKPFVINNLNMQYDIQDRRKVY 144 (1266)
Q Consensus 69 ~IL~RL~~~g~f~viiF~dkvIL-e~vE~WP~cD~LIsFfS~GfPL---~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vl 144 (1266)
+=|-++.+...+|++|-|-+.-| .-|- |. |-..|+|. .|+-+..+ ++|.-+=
T Consensus 53 ~~lv~fA~~~~idl~vVGPE~pL~~Gvv-----D~---l~~~Gi~vFGPsk~AA~lE----------------~SK~faK 108 (428)
T COG0151 53 EALVAFAKEKNVDLVVVGPEAPLVAGVV-----DA---LRAAGIPVFGPTKAAAQLE----------------GSKAFAK 108 (428)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHhhhhH-----HH---HHHCCCceeCcCHHHHHHH----------------hhHHHHH
Confidence 34556666678999999988877 6554 33 33677777 45544443 6788888
Q ss_pred HHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCchhhhhcccCCc
Q psy10158 145 ALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSR 224 (1266)
Q Consensus 145 qiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignk 224 (1266)
.+++++|||++.+-..+. ..+..+||.--| .|+|+|| +|- .+|.||. +...+.-.
T Consensus 109 ~fm~k~~IPta~y~~f~~---------~e~a~ayi~~~g----~piVVKa-dGL----------aaGKGV~-V~~~~eeA 163 (428)
T COG0151 109 DFMKKYGIPTAEYEVFTD---------PEEAKAYIDEKG----APIVVKA-DGL----------AAGKGVI-VAMTLEEA 163 (428)
T ss_pred HHHHHcCCCcccccccCC---------HHHHHHHHHHcC----CCEEEec-ccc----------cCCCCeE-EcCCHHHH
Confidence 999999999999877763 234566775555 9999999 442 1578885 44432100
Q ss_pred cccccCCcccc------cCcceEEeeccCCCCceEEEEEECCceeE---EeeccCCCCCCceeecCCCCceeeEee-CCH
Q psy10158 225 SSVYSPESRVR------KSGSFIYEDFMPTDGTDVKVYTVGPDYAH---AEARKSPALDGKVERDSEGKEIRYPVI-LSN 294 (1266)
Q Consensus 225 SS~y~p~s~vr------~~gSyIYEEFI~t~GtDVKVYtVGp~~vh---Ae~RKSPvvDG~VRRN~hgKEiRypV~-LT~ 294 (1266)
-. +. +..+. .....+.|||+.-.---+=|+|=|.+++- |---|= +.||+-=-|+-|=|.=.|+. +|+
T Consensus 164 ~~-a~-~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKr-a~dgD~GPNTGGMGaysp~P~~t~ 240 (428)
T COG0151 164 EA-AV-DEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKR-AYDGDTGPNTGGMGAYSPAPFITD 240 (428)
T ss_pred HH-HH-HHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECcccccccc-ccCCCCCCCCCCCCCCCCCCCCCH
Confidence 00 00 00111 12468999999844455666666666432 111111 24888888888877666554 455
Q ss_pred HHH-----HHHHHHHHHhC---Ccccee---eEEeeCCCeEEEeec
Q psy10158 295 AEK-----LISRKVCLAFK---QTVCGF---DLLRANGKSFVCDVN 329 (1266)
Q Consensus 295 eEK-----~IA~kaakAFG---q~VCGf---DLLRs~ggsyVcDVN 329 (1266)
+.- +|-..+.+++. -..+|| =|+-+..||+|+|-|
T Consensus 241 e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 533 33344555554 457787 223356779999999
No 125
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=80.46 E-value=1 Score=49.96 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=28.8
Q ss_pred CEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC----CC--ceEEEEEEC
Q psy10158 189 PFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT----DG--TDVKVYTVG 259 (1266)
Q Consensus 189 PfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t----~G--tDVKVYtVG 259 (1266)
-+|.||..|. +|.|. +|++... +.. .......+.||.|+||+. +| -|||+||+=
T Consensus 67 ~wI~KP~~~~-----------rG~GI-~l~~~~~----~i~-~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGI-KLFNNLE----QIL-RFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp -EEEEES------------------E-EEES-HH----HHH-CCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred EEEEeccccC-----------CCCCc-eecCCHH----HHH-HHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 4888888886 68887 4887532 000 002347899999999973 88 899999873
No 126
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=68.63 E-value=3.7 Score=49.60 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=54.8
Q ss_pred hhHHhhhHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCccceeEEEeccchhHHHHHHHHHhC-CCCccccCCh
Q psy10158 779 TISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYG-GLTESVHMND 857 (1266)
Q Consensus 779 ~IG~~is~pLLkKI~~DL~~~~ee~~es~~RL~p~ys~gV~SP~RhVRTRlYFTSESHIHTLLNvLr~g-gl~~~~~~~d 857 (1266)
.|+...+.|||+.|...|.. + +. ..+. .|.. |.+ |-.||.--.|.|-+|+++|..- .|+..
T Consensus 288 ~vAr~~a~pLL~~I~~~L~~---~-~~---~~~~---~~~~-~p~--kl~~lvGHDTNIA~l~~~L~~~w~lp~q----- 349 (436)
T PRK10172 288 EVARHRATPLLDLIMTALTP---H-PP---QKQA---YGIT-LPT--SVLFIAGHDTNLANLGGALELNWTLPGQ----- 349 (436)
T ss_pred HHHHhcccHHHHHHHHHHhc---c-cc---cccc---ccCC-CCc--eEEEEEecchhHHHHHHHhCCCccCCCC-----
Confidence 45668889999999999952 0 00 0000 0111 222 7889999999999999998652 11110
Q ss_pred HHHHHHHhhhcCCCCccccccceeeeeeCCCCCCCCCCce-EEEE
Q psy10158 858 EQWMRAMEYVSMVSELNYMSQVVIMLYEDPTKDPTSDERF-HIEL 901 (1266)
Q Consensus 858 ~~~~ram~~l~~ipELdYLSqIvf~LYE~~~~d~~~~~rf-~Iei 901 (1266)
.+.+| +=+-+|||+|++.+ +.++| +|++
T Consensus 350 ---------~~~tP---pGg~LvFErw~d~~----~~~~~vrv~~ 378 (436)
T PRK10172 350 ---------PDNTP---PGGELVFERWRRLS----DNSQWIQVSL 378 (436)
T ss_pred ---------CCCCC---CcceEEEEEEeeCC----CCceEEEEEE
Confidence 11222 35889999999842 34554 6664
No 127
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=66.69 E-value=23 Score=41.58 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEeccccc-CcceEEEeccCCCCchhhhh
Q psy10158 140 RRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAE-DHNIYIYYPTSAGGGSQRLF 218 (1266)
Q Consensus 140 Rr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~Ge-dHNI~IYyp~s~GgGv~~Lf 218 (1266)
|=.-|.+-.+.|+|.|+|+.++... | ..+-.+.-|+|.||-.|- .|-+ |-.+.|
T Consensus 115 KPllY~ra~elgl~~P~Ty~v~S~~------------d---~~~~el~FPvILKP~mgg~~~~~----------araKa~ 169 (415)
T COG3919 115 KPLLYNRAEELGLPYPKTYLVNSEI------------D---TLVDELTFPVILKPGMGGSVHFE----------ARAKAF 169 (415)
T ss_pred CcHHHHHHHHhCCCCcceEEecchh------------h---hhhhheeeeEEecCCCCCcceee----------hhhhee
Confidence 4456888899999999999997421 1 112224578999996652 2111 122233
Q ss_pred cccCCccccccCCccc-c-----cCcceEEeeccCCCCceEEEEEE----CCc---eeEEeeccCCCCCCceeecCCCCc
Q psy10158 219 RKIGSRSSVYSPESRV-R-----KSGSFIYEDFMPTDGTDVKVYTV----GPD---YAHAEARKSPALDGKVERDSEGKE 285 (1266)
Q Consensus 219 rKignkSS~y~p~s~v-r-----~~gSyIYEEFI~t~GtDVKVYtV----Gp~---~vhAe~RKSPvvDG~VRRN~hgKE 285 (1266)
+- .++. ++. ..+ + ---+.|+||||+-+|+.-++|.- |-. +.+--+|+=|| | | +=
T Consensus 170 ~a-~d~e-e~k--~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPv-d--f------gy 236 (415)
T COG3919 170 TA-ADNE-EMK--LALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPV-D--F------GY 236 (415)
T ss_pred ec-cCHH-HHH--HHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCc-c--c------cc
Confidence 31 1000 000 000 1 24467999999998888887642 333 33334677774 4 2 33
Q ss_pred eeeEeeCCHHHH--HHHHHHHHHhCC-ccceeeEEee-CCCeE-EEeec----Cceec
Q psy10158 286 IRYPVILSNAEK--LISRKVCLAFKQ-TVCGFDLLRA-NGKSF-VCDVN----GFSFV 334 (1266)
Q Consensus 286 iRypV~LT~eEK--~IA~kaakAFGq-~VCGfDLLRs-~ggsy-VcDVN----GwSFV 334 (1266)
.-+.|++-++.+ +-|+++-...+- ...-||+=+- .+||| ++||| .|+|.
T Consensus 237 tst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl 294 (415)
T COG3919 237 TSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGL 294 (415)
T ss_pred ccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeE
Confidence 456667666333 335555444443 3567888876 45555 89999 35554
No 128
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=65.62 E-value=56 Score=33.49 Aligned_cols=84 Identities=6% Similarity=-0.016 Sum_probs=53.4
Q ss_pred ccccCcceEEeeccCCCCceEEEEEECCceeEEeeccCCCCCCceeecCCCCceeeEeeCCHHHHHHHHHHHH--HhCCc
Q psy10158 233 RVRKSGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCL--AFKQT 310 (1266)
Q Consensus 233 ~vr~~gSyIYEEFI~t~GtDVKVYtVGp~~vhAe~RKSPvvDG~VRRN~hgKEiRypV~LT~eEK~IA~kaak--AFGq~ 310 (1266)
.+..+...+..|.|. -..--|+|++.++++.+-. -. |.- +. ...++-..-|.++.+ .-.-.
T Consensus 31 ~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~-Y~----~~~---------~~--~~~~~~~~~~~~~~~~~~~~p~ 93 (130)
T PF14243_consen 31 SLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSP-YR----GDW---------DL--EPDPDVVAFAIQALAAAWTLPP 93 (130)
T ss_pred CCCCCceEEEeceEe-eeeeEEEEEECCEEEEEee-cC----CCc---------cc--CCCHHHHHHHHHHHHhcccCCC
Confidence 444566778888777 3567899999988665432 21 111 11 113333334444444 44578
Q ss_pred cceeeEEee-CCCeEEEeecCcee
Q psy10158 311 VCGFDLLRA-NGKSFVCDVNGFSF 333 (1266)
Q Consensus 311 VCGfDLLRs-~ggsyVcDVNGwSF 333 (1266)
.|.+|+=+. +|+.+|+|+|....
T Consensus 94 ~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 94 AYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred eEEEEEEEeCCCCEEEEEecCccc
Confidence 899999998 88999999996543
No 129
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=65.43 E-value=18 Score=43.40 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=47.0
Q ss_pred CEEEecccc-cCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC---CC--ceEEEEEECCce
Q psy10158 189 PFVEKPVSA-EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT---DG--TDVKVYTVGPDY 262 (1266)
Q Consensus 189 PfVeKpv~G-edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t---~G--tDVKVYtVGp~~ 262 (1266)
.+|.||+-| |.-||-|+-+ |+. +.+.-| .|. +..+|||+|.+- +| .=|=+++||+..
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y~-------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~ 371 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NYA-------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSEA 371 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CCC-------CCCeEEEEccCCcccCCcEEEEEEEEECCEe
Confidence 499999999 7677777743 222 222212 122 678899999982 66 358899999999
Q ss_pred eEEeeccC
Q psy10158 263 AHAEARKS 270 (1266)
Q Consensus 263 vhAe~RKS 270 (1266)
|.---|.+
T Consensus 372 aGlgiRe~ 379 (397)
T PHA02117 372 AGLCIRED 379 (397)
T ss_pred eEEEEecC
Confidence 99999987
No 130
>KOG3720|consensus
Probab=60.07 E-value=5.2 Score=47.70 Aligned_cols=162 Identities=18% Similarity=0.195 Sum_probs=87.4
Q ss_pred CCCCcchhhhhhhhhcCccccCc--ccHHHHHHHHHhhhcccccccccCCccchhhhHHhhhHHHHHHHHHHHHhhhhhh
Q psy10158 726 SKIPDIYDCIKYDLQHNQHTVQF--DQAEELYLNAKYMADIVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEES 803 (1266)
Q Consensus 726 SKIpDiYD~iKYD~lHNr~fL~~--~~l~ELY~laK~LaD~V~PQEYGIt~~EKL~IG~~is~pLLkKI~~DL~~~~ee~ 803 (1266)
-++-++||+.+=.-.||..+..| +.....+.--+.+.-..-=+. ..-.+...+-..+||+.|++++......
T Consensus 209 ~~~~~~~d~l~~e~~~~~~~p~w~~~~~~~~~~~i~~~~~~~~~~~-----~~~~e~~kl~gG~lln~il~~~~~k~~~- 282 (411)
T KOG3720|consen 209 DNFNDLYDTLKCEQFNNLPLPPWLNDQAQIFYDSIQAFSEGLFVGP-----DYSPEMRKLRGGPLLNDLLNNMVEKSSC- 282 (411)
T ss_pred hhhcccccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHccCc-----chhHHHHHhccChhHHHHHHHHHHHHhc-
Confidence 34445666666666666433332 111123333333322221111 2444555666779999999998744332
Q ss_pred hhhhccCCCCCCCCCCCCCccceeEEEeccchhHHHHHHHHHhCCCCccccCChHHHHHHHhhhcCCCCccccccceeee
Q psy10158 804 EENVNRLNPQYSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSELNYMSQVVIML 883 (1266)
Q Consensus 804 ~es~~RL~p~ys~gV~SP~RhVRTRlYFTSESHIHTLLNvLr~ggl~~~~~~~d~~~~ram~~l~~ipELdYLSqIvf~L 883 (1266)
.+.+. ..+|+-.-.|=+||++||--=++... ..| .|-+.|.||+
T Consensus 283 -----~~~~~-------------~~~~~~~~~HD~tl~alL~aL~~~~~----------------~~P--~yas~i~iEl 326 (411)
T KOG3720|consen 283 -----SLAKK-------------KLFYSYLYGHDTTLYALLAALGVGDG----------------EWP--PYASAIAIEL 326 (411)
T ss_pred -----ccCcc-------------ccceeeccCccHHHHHHHHHHhccCC----------------CCC--chHHHhHhhh
Confidence 11111 23343333387777777632122210 122 4889999999
Q ss_pred eeCCCCCCCCCCceEEEEEEcCCCcc-cccCCCCCCCCCCCCCCCccccCCCC
Q psy10158 884 YEDPTKDPTSDERFHIELHFSPGVNC-CVQKNLPPGPGFRPHSRNDQKKNLPR 935 (1266)
Q Consensus 884 YE~~~~d~~~~~rf~Iei~~SpGa~~-~~q~~~p~g~gfrp~s~~~~~~~~~~ 935 (1266)
|++.+ ..+.|+|.+.-..+- .....+|-..++.|-+.-.+..+..+
T Consensus 327 ~~~~~------~~~~vk~~yr~~~~~~~~~~~ipgC~~~C~l~~f~~~~~~~~ 373 (411)
T KOG3720|consen 327 HRNKG------GKPYVKLLYRNDEHSEPVTLQIPGCDGPCPLSTFQNLAKDVR 373 (411)
T ss_pred eecCC------CCEEEEEEEecCCCCCceeccCCCCCCCCCHHHHHHHHhhcC
Confidence 99964 667899998666553 34666666666777666444443333
No 131
>KOG4609|consensus
Probab=53.93 E-value=11 Score=42.38 Aligned_cols=47 Identities=43% Similarity=0.384 Sum_probs=37.9
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhh
Q psy10158 525 ELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLL 588 (1266)
Q Consensus 525 ElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL 588 (1266)
-||+.||.|||-.|++++. .||- | =||-+|.--|++-||-+..|-|=
T Consensus 113 hLTelGReQAE~tGkRL~e---------lglk-----~---d~vv~StM~RA~ETadIIlk~l~ 159 (284)
T KOG4609|consen 113 HLTELGREQAELTGKRLAE---------LGLK-----F---DKVVASTMVRATETADIILKHLP 159 (284)
T ss_pred hcchhhHHHHHHHhHHHHH---------cCCc-----h---hhhhhhhhhhhHHHHHHHHHhCC
Confidence 7999999999999999995 4552 1 25778888999999999877544
No 132
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=51.04 E-value=42 Score=42.60 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=47.9
Q ss_pred CEEEecccc-cCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC---CC--ceEEEEEECCce
Q psy10158 189 PFVEKPVSA-EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT---DG--TDVKVYTVGPDY 262 (1266)
Q Consensus 189 PfVeKpv~G-edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t---~G--tDVKVYtVGp~~ 262 (1266)
.+|.||+-| |.-||-||-+. |. .+.+.-| .|. +..+|||+|.+- +| .=|=+++||+++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g----~y~-------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~ 592 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSG----KFA-------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGNY 592 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCC----CCC-------CCCeEEEEeccCcccCCCEEEEEEEEECCEE
Confidence 499999999 87777777432 32 1222222 133 677899999982 44 668889999999
Q ss_pred eEEeeccC
Q psy10158 263 AHAEARKS 270 (1266)
Q Consensus 263 vhAe~RKS 270 (1266)
|..--|.+
T Consensus 593 aG~giRed 600 (619)
T PRK10507 593 GGTCLRGD 600 (619)
T ss_pred EEEEEecC
Confidence 99999987
No 133
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.87 E-value=29 Score=31.76 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred eeecCCCCceeeEeeCCHHHHHHHHHHHHHhCCc
Q psy10158 277 VERDSEGKEIRYPVILSNAEKLISRKVCLAFKQT 310 (1266)
Q Consensus 277 VRRN~hgKEiRypV~LT~eEK~IA~kaakAFGq~ 310 (1266)
|+.+...-|..+|..||++|+.+.-.+|.-||+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5556668899999999999999999999999986
No 134
>KOG0238|consensus
Probab=41.21 E-value=25 Score=43.72 Aligned_cols=177 Identities=12% Similarity=0.147 Sum_probs=108.9
Q ss_pred cCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEecc
Q psy10158 129 NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPT 208 (1266)
Q Consensus 129 Ndl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~ 208 (1266)
=+..++..+-||-.+-+|..++|||+=.- .++ ++.+.+...-.-..|..|+++|+.-|-
T Consensus 101 P~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g-------~~qs~e~~~~~a~eIgyPvMiKa~~GG---------- 159 (670)
T KOG0238|consen 101 PPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHG-------EDQSDEEAKKVAREIGYPVMIKATAGG---------- 159 (670)
T ss_pred CCHHHHHHhcchHHHHHHHHhcCCccccC----ccc-------ccccHHHHHHHHHhcCCcEEEEeccCC----------
Confidence 34566667788999999999999995221 111 111222221112235699999999886
Q ss_pred CCCCchhhhhcccCCccccc-----cCCcccccCcceEEeeccCCCCceEEEEEECC---ceeEEeeccCCCCCCceeec
Q psy10158 209 SAGGGSQRLFRKIGSRSSVY-----SPESRVRKSGSFIYEDFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERD 280 (1266)
Q Consensus 209 s~GgGv~~LfrKignkSS~y-----~p~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN 280 (1266)
-|.|+| ++.+-+.-.-.| .....+ -+...+.|.||.. -.-|-|=+.|+ +++|--+|-+-+ =|||
T Consensus 160 -GGkGMr-ia~~~~ef~~~~~~ak~Ea~~sF-Gdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCSv----QRRn 231 (670)
T KOG0238|consen 160 -GGKGMR-IAWSEEEFEEGLESAKQEAAKSF-GDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCSV----QRRN 231 (670)
T ss_pred -CCcceE-eecChHHHHHHHHHHHHHHHhhc-CcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccch----hhhh
Confidence 255663 555321100001 111122 2555688999986 35566666665 456767787743 4677
Q ss_pred CCCCceeeEeeCCHHHH----HHHHHHHHHhCCccce-eeE-EeeCCCeEEEeecCceec
Q psy10158 281 SEGKEIRYPVILSNAEK----LISRKVCLAFKQTVCG-FDL-LRANGKSFVCDVNGFSFV 334 (1266)
Q Consensus 281 ~hgKEiRypV~LT~eEK----~IA~kaakAFGq~VCG-fDL-LRs~ggsyVcDVNGwSFV 334 (1266)
-.==|.+-.-.|+++-+ +-|.++|+|.|-.=+| |.. +.+.+.-|.+|+|--=-|
T Consensus 232 QKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 232 QKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred hhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 65556665666776544 5689999999988777 444 446889999999954444
No 135
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=39.52 E-value=30 Score=42.28 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=46.0
Q ss_pred CCEEEecccccCcceEEEeccCCCCchhhhhcccCCccccccCC---cccc--cCcceEEeeccCC---------CCc--
Q psy10158 188 KPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPE---SRVR--KSGSFIYEDFMPT---------DGT-- 251 (1266)
Q Consensus 188 kPfVeKpv~GedHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~---s~vr--~~gSyIYEEFI~t---------~Gt-- 251 (1266)
.=+|+||.++- .|.||- +| -+++++ ..++ .++.||+|||+.. +|+
T Consensus 339 ~~lVLKP~D~Y-----------gg~GV~-----~G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~~~~~~~dg~~~ 399 (445)
T PF14403_consen 339 DRLVLKPNDEY-----------GGKGVY-----IG---WETSPEEWEAALEEAAREPYILQEYVRPPREPMPAFEDGEVV 399 (445)
T ss_pred hcEEecccccc-----------CCCCeE-----EC---CcCCHHHHHHHHHHHhcCCcEEEEEecCCccccccccCCcee
Confidence 45999999985 455664 44 233443 1333 4679999999863 232
Q ss_pred ------eEEEEEECCceeEEeeccCCCCCCce
Q psy10158 252 ------DVKVYTVGPDYAHAEARKSPALDGKV 277 (1266)
Q Consensus 252 ------DVKVYtVGp~~vhAe~RKSPvvDG~V 277 (1266)
++=.|+-|++++.+-+|-|+ .+..
T Consensus 400 ~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 400 FEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred EeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 23348888999999999994 4444
No 136
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=39.40 E-value=34 Score=41.72 Aligned_cols=69 Identities=25% Similarity=0.475 Sum_probs=49.4
Q ss_pred ccceeecc-ccCCCcH---HHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEE--eccCCCCCccccc
Q psy10158 99 IVDCLISF-HSKGFPL---EKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAV--LDRESPDPVKHEL 172 (1266)
Q Consensus 99 ~cD~LIsF-fS~GfPL---~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~--~~rd~~~~~~~~l 172 (1266)
.+|.+|+| ||.|-|+ .-+-+|| .++|||.|+--. ...|...|+++.+
T Consensus 306 ~VDlIisfD~Sa~~pf~~l~~~~~~c---------------------------~~~~ipfp~i~~~~~~~d~~~p~ecy~ 358 (430)
T cd07202 306 NTDLILSFDFSEGDPFETIKDTAEYC---------------------------RKHNIPFPQVDEAKLDQDAEAPKDFYV 358 (430)
T ss_pred cccEEEEeecCCCchhHHHHHHHHHH---------------------------HHcCCCCCCcCcccChhhhccccceEE
Confidence 47999999 8889887 4566777 678999999765 5445556777777
Q ss_pred cccCCeEEEcCeEecCCEEEeccccc
Q psy10158 173 VESEDHVEVNGIVFNKPFVEKPVSAE 198 (1266)
Q Consensus 173 ~e~~D~I~v~G~~~~kPfVeKpv~Ge 198 (1266)
.+..+. -.+|+-|+|-+-.-|.
T Consensus 359 f~~~~~----p~v~hfpl~n~~~~g~ 380 (430)
T cd07202 359 FKGENG----PVVMHFPLFNKVNCGD 380 (430)
T ss_pred ecCCCC----CEEEEEEeeccccccc
Confidence 766532 5566677777776554
No 137
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=37.54 E-value=39 Score=42.55 Aligned_cols=176 Identities=12% Similarity=0.179 Sum_probs=108.7
Q ss_pred ccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEE
Q psy10158 126 FVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIY 205 (1266)
Q Consensus 126 ~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IY 205 (1266)
|+==+..++..+=||..+-.+..+.|+|+= |..+..+++.+.+.--...|..|+.+|..-|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~V-----------PG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTV-----------PGYHGPIQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCcc-----------CCCCCcccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 333455677778899999999999999952 22222334444443333455699999998876
Q ss_pred eccCCCCchhhhhcccCCcccccc-----CCcccccCcceEEeeccCCCCceEEEEEEC---CceeEEeeccCCCCCCce
Q psy10158 206 YPTSAGGGSQRLFRKIGSRSSVYS-----PESRVRKSGSFIYEDFMPTDGTDVKVYTVG---PDYAHAEARKSPALDGKV 277 (1266)
Q Consensus 206 yp~s~GgGv~~LfrKignkSS~y~-----p~s~vr~~gSyIYEEFI~t~GtDVKVYtVG---p~~vhAe~RKSPvvDG~V 277 (1266)
-|.|+ |+.++...-.-.|. ..+.+ -++..+.|.|+.. -.-|-+=|.| ++++|.=+|-+-. =
T Consensus 164 ----GGKGM-Rvv~~~~e~~e~l~sarrEA~asF-Gddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl----Q 232 (645)
T COG4770 164 ----GGKGM-RVVETPEEFAEALESARREAKASF-GDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL----Q 232 (645)
T ss_pred ----CCCce-EeecCHHHHHHHHHHHHHHHHhhc-CCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch----h
Confidence 25566 45554331111111 00111 3778888999975 3344444454 4678888888742 3
Q ss_pred eecCCCCceeeEeeCCHHHHH----HHHHHHHHhCCccce-eeEEee-CCCeEEEeecC
Q psy10158 278 ERDSEGKEIRYPVILSNAEKL----ISRKVCLAFKQTVCG-FDLLRA-NGKSFVCDVNG 330 (1266)
Q Consensus 278 RRN~hgKEiRypV~LT~eEK~----IA~kaakAFGq~VCG-fDLLRs-~ggsyVcDVNG 330 (1266)
|||-.==|.+-.=-||++-++ -|+++|++.|--=+| |..|-. ++.-|.+|+|=
T Consensus 233 RRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNT 291 (645)
T COG4770 233 RRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNT 291 (645)
T ss_pred hhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeec
Confidence 555443444444558887664 589999999987777 444443 55677777774
No 138
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=36.67 E-value=64 Score=42.25 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=114.6
Q ss_pred ccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEE
Q psy10158 126 FVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIY 205 (1266)
Q Consensus 126 ~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IY 205 (1266)
|+==..+....+=||-++-.+-.++|||+= -..+++ ...+.+...+.+-.| .|+++|-.-|-
T Consensus 108 FIGP~~e~ld~~GdKv~Ar~~A~~agvPvi----pgt~~~---~~~~ee~~~fa~~~g----yPvmiKA~~GG------- 169 (1149)
T COG1038 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVI----PGTDGP---IETIEEALEFAEEYG----YPVMIKAAAGG------- 169 (1149)
T ss_pred EeCCCHHHHHHhccHHHHHHHHHHcCCCcc----CCCCCC---cccHHHHHHHHHhcC----CcEEEEEccCC-------
Confidence 333456667778889888888889999942 111211 111222223333344 99999998886
Q ss_pred eccCCCCchhhhhcccCCccccccC-----CcccccCcceEEeeccCCCCceEEEEEECC---ceeEEeeccCCCCCCce
Q psy10158 206 YPTSAGGGSQRLFRKIGSRSSVYSP-----ESRVRKSGSFIYEDFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKV 277 (1266)
Q Consensus 206 yp~s~GgGv~~LfrKignkSS~y~p-----~s~vr~~gSyIYEEFI~t~GtDVKVYtVGp---~~vhAe~RKSPvvDG~V 277 (1266)
-|.|+ |..|+...-.-.|.- ...+ -++..-.|.|+.. -.-|-|=+.|+ ++||--+|-+-| =
T Consensus 170 ----GGRGM-R~vr~~~~l~~~~~~AksEAkaAF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv----Q 238 (1149)
T COG1038 170 ----GGRGM-RVVRSEADLAEAFERAKSEAKAAF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV----Q 238 (1149)
T ss_pred ----Cccce-eeecCHHHHHHHHHHHHHHHHHhc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch----h
Confidence 24465 465543211111110 0112 2444445777653 36677777775 689999998864 4
Q ss_pred eecCCCCceeeEeeCCHHHHH----HHHHHHHHhCCccce-eeEEee-CCCeEEEeecCceec
Q psy10158 278 ERDSEGKEIRYPVILSNAEKL----ISRKVCLAFKQTVCG-FDLLRA-NGKSFVCDVNGFSFV 334 (1266)
Q Consensus 278 RRN~hgKEiRypV~LT~eEK~----IA~kaakAFGq~VCG-fDLLRs-~ggsyVcDVNGwSFV 334 (1266)
|||-.==|++-.+-|+++.++ -|.|+|+..|-.=+| |..|-. +|+-|.||||--=-|
T Consensus 239 RRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 239 RRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred hccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 777766788888999997764 589999999988777 566665 569999999965444
No 139
>KOG0369|consensus
Probab=35.48 E-value=84 Score=40.48 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=108.6
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeEEEcCeEecCCEEEecccccCcceEEEeccCCCCc
Q psy10158 134 QYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIYIYYPTSAGGG 213 (1266)
Q Consensus 134 Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I~v~G~~~~kPfVeKpv~GedHNI~IYyp~s~GgG 213 (1266)
..-+-||-.+-++--++|||+=. .-+++ .....|..+++.--| .|+|+|-.-|- -|.|
T Consensus 142 i~~mGDKv~AR~~Ai~agVpvVP----GTpgP---itt~~EA~eF~k~yG----~PvI~KAAyGG-----------GGRG 199 (1176)
T KOG0369|consen 142 IDSMGDKVAARAIAIEAGVPVVP----GTPGP---ITTVEEALEFVKEYG----LPVIIKAAYGG-----------GGRG 199 (1176)
T ss_pred HHHhhhHHHHHHHHHHcCCCccC----CCCCC---cccHHHHHHHHHhcC----CcEEEeecccC-----------CCcc
Confidence 34456788888888889998421 11222 122334445553344 99999998886 2456
Q ss_pred hhhhhcccCCccccccCC-c---ccccCcceEEeeccCCCCceEEEEEECC---ceeEEeeccCCCCCCceeecCCCCce
Q psy10158 214 SQRLFRKIGSRSSVYSPE-S---RVRKSGSFIYEDFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEI 286 (1266)
Q Consensus 214 v~~LfrKignkSS~y~p~-s---~vr~~gSyIYEEFI~t~GtDVKVYtVGp---~~vhAe~RKSPvvDG~VRRN~hgKEi 286 (1266)
+ |..|+...-...|.-. + .-=-+|....|.|++- -.-|-|-..|+ +++|--+|-+-| -||--.=-|+
T Consensus 200 m-RvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv----QRRHQKVVEi 273 (1176)
T KOG0369|consen 200 M-RVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV----QRRHQKVVEI 273 (1176)
T ss_pred e-EEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch----hhhhcceeEe
Confidence 5 5777643222222110 1 0114899999999975 35566666764 679999998854 2343333356
Q ss_pred eeEeeCCHHHHH----HHHHHHHHhCCccce-eeEEee-CCCeEEEeecCceec
Q psy10158 287 RYPVILSNAEKL----ISRKVCLAFKQTVCG-FDLLRA-NGKSFVCDVNGFSFV 334 (1266)
Q Consensus 287 RypV~LT~eEK~----IA~kaakAFGq~VCG-fDLLRs-~ggsyVcDVNGwSFV 334 (1266)
+-.-.|.++-++ -|.|+|+..|-.=+| +..|-- +|+-|.||||.-=-|
T Consensus 274 APA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 274 APAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 655667665443 478999999988887 455554 799999999976555
No 140
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=34.28 E-value=19 Score=42.26 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCCCCeEEec
Q psy10158 141 RKVYALLEKEGIEIPRYAVLD 161 (1266)
Q Consensus 141 r~vlqiL~~~gIp~P~tv~~~ 161 (1266)
..+.++|++.|||+|++.++.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~ 26 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVAT 26 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeC
Confidence 457899999999999998885
No 141
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.53 E-value=22 Score=38.96 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE-EEcCeEecCCEEEeccc
Q psy10158 142 KVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV-EVNGIVFNKPFVEKPVS 196 (1266)
Q Consensus 142 ~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv~ 196 (1266)
.+-++|.++|||+|+..++.... |..+.. .+++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~e---------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSPE---------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSHH---------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCHH---------HHHHHHHHhCC----CcEEEEEeE
Confidence 46789999999999999996521 122222 3454 789999953
No 142
>KOG4754|consensus
Probab=24.03 E-value=86 Score=35.66 Aligned_cols=58 Identities=29% Similarity=0.288 Sum_probs=42.6
Q ss_pred CCccChhHHHHHHHHHHHHHhccCCCCCCCccchhhcccccccceEEecCchhHHHHHHHHHHHhhcccCCcC
Q psy10158 523 GGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELT 595 (1266)
Q Consensus 523 GGElThaGR~QAeeLG~~fR~mYPggq~~~~gLLRLhst~rhDlKIYSSdEgRVq~TAaaFAkglL~lEgeLt 595 (1266)
--.||+.|+.|++.|+...+. .+|.. +=+| |++|.=+|+..||-.=-+|-|+-.|+.+
T Consensus 45 D~~LTplG~~Qv~~l~~~~~A---------~qL~~-----~iel-iv~SPMrRtLqT~v~~f~~~~~e~g~~~ 102 (248)
T KOG4754|consen 45 DPHLTPLGWKQVDNLRKHLMA---------KQLPN-----KIEL-IVVSPMRRTLQTMVIAFGGYLAEDGEDP 102 (248)
T ss_pred ccccCHHHHHHHHHHhhhhhh---------hhcCC-----ceeE-EEechHHHHHHHHHHHhcceeccCCCcC
Confidence 568999999999999997773 23321 0122 8999999999999766677777556543
No 143
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=23.54 E-value=57 Score=39.37 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=47.6
Q ss_pred hHHhhhHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCccceeEEEeccchhHHHHHHHHHhCCCCccccCChHH
Q psy10158 780 ISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPGRHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQ 859 (1266)
Q Consensus 780 IG~~is~pLLkKI~~DL~~~~ee~~es~~RL~p~ys~gV~SP~RhVRTRlYFTSESHIHTLLNvLr~ggl~~~~~~~d~~ 859 (1266)
++..++.|||+.|..-|.. + . -.. .|-.+||.-.|.|..|++.|- +..
T Consensus 279 ~ar~~g~pLL~~i~~~L~~--~----~-----------~~~----~Kl~lysgHDtnIa~ll~ALg---l~~-------- 326 (413)
T PRK10173 279 VARNVAKPLVKYIDKALVT--D----R-----------ASA----PKVTVLVGHDSNIASLLTALD---FKP-------- 326 (413)
T ss_pred HHHHHHHHHHHHHHHHHhc--C----C-----------CCC----CCEEEEEEccccHHHHHHHhC---CCc--------
Confidence 3556777999999777741 0 0 001 267999999999999999984 221
Q ss_pred HHHHHhhhcCCCCccccccceeeeeeCC
Q psy10158 860 WMRAMEYVSMVSELNYMSQVVIMLYEDP 887 (1266)
Q Consensus 860 ~~ram~~l~~ipELdYLSqIvf~LYE~~ 887 (1266)
|. + -......-|=+.|+||+|++.
T Consensus 327 ~~--l--P~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 327 YQ--L--HDQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred cc--c--CCCCCcCCccceEEEEEEEeC
Confidence 10 0 001234568899999999974
No 144
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=23.53 E-value=43 Score=39.43 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEeccCCCCCccccccccCCeE-EEcCeEecCCEEEecc
Q psy10158 140 RRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHV-EVNGIVFNKPFVEKPV 195 (1266)
Q Consensus 140 Rr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e~~D~I-~v~G~~~~kPfVeKpv 195 (1266)
-..+.++|+++|||+|.+.++.... +..... .++ ..|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~~~---------ea~~~a~~i~----g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATTPE---------EAVEAAEELG----GGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCCHH---------HHHHHHHHcC----CCcEEEEEe
Confidence 4467799999999999999886421 111111 222 389999996
No 145
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=22.99 E-value=58 Score=33.81 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhcCcEEEEEecccccccccccccccceeeccccCCCcH
Q psy10158 66 PMKEILTRLEEFEFIKMIVFSEETIQKPVDEWPIVDCLISFHSKGFPL 113 (1266)
Q Consensus 66 PMr~IL~RL~~~g~f~viiF~dkvILe~vE~WP~cD~LIsFfS~GfPL 113 (1266)
-+.+|++.|.+.| |++|-|++--+.|.|..|-.+|++|+-+|.|+.-
T Consensus 120 Ne~el~~~l~~~~-~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n 166 (206)
T PF04577_consen 120 NEDELLEILKKYG-FEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTN 166 (206)
T ss_pred CHHHHHHHHhhCC-eEEEeCCCCCHHHHHHHhcCCCEEEecCchHhhe
Confidence 3567888888777 7666655444339999999999999999998653
No 146
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=22.02 E-value=77 Score=39.80 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=33.5
Q ss_pred ccceeecc-ccCCCcH---HHHHHHHhhcCCccccCccchhhhhHHHHHHHHHHhcCCCCCCeEEeccCCCCCccccccc
Q psy10158 99 IVDCLISF-HSKGFPL---EKAIKYANLRKPFVINNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVE 174 (1266)
Q Consensus 99 ~cD~LIsF-fS~GfPL---~KAi~Y~klrkp~~lNdl~~Q~ilrDRr~vlqiL~~~gIp~P~tv~~~rd~~~~~~~~l~e 174 (1266)
.+|.+|+| ||.|.|. .-|-.|| .++|||-|+--..-.+...++++.+.+
T Consensus 395 ~VDlIisfd~Sa~~~~~~L~~~~~y~---------------------------~~~gIpfPk~~~~~~d~~~~kecyvf~ 447 (541)
T cd07201 395 KVDVILSLNYSLGSQFEPLKQASEYC---------------------------SEQGIPFPKIELSPEDQENLKECYVFE 447 (541)
T ss_pred cccEEEEeccccCCcchHHHHHHHHH---------------------------HHcCCCCCCCCCChhHccCCceeEEeC
Confidence 47999998 7778776 6788888 567899888654433333445554444
Q ss_pred c
Q psy10158 175 S 175 (1266)
Q Consensus 175 ~ 175 (1266)
+
T Consensus 448 ~ 448 (541)
T cd07201 448 D 448 (541)
T ss_pred C
Confidence 4
No 147
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=21.53 E-value=58 Score=38.93 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCCCeEEecc
Q psy10158 142 KVYALLEKEGIEIPRYAVLDR 162 (1266)
Q Consensus 142 ~vlqiL~~~gIp~P~tv~~~r 162 (1266)
.+.++|++.|||+|++.++..
T Consensus 7 eak~lL~~yGIpvp~~~~~~~ 27 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYS 27 (392)
T ss_pred HHHHHHHHcCCCCCCceEECC
Confidence 467999999999999999864
No 148
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=21.19 E-value=1e+02 Score=37.13 Aligned_cols=72 Identities=26% Similarity=0.491 Sum_probs=47.6
Q ss_pred EEEecccc-cCcceEEEeccCCCCchhhhhcccCCccccccCCcccccCcceEEeeccCC---CC--ceEEEEEECCcee
Q psy10158 190 FVEKPVSA-EDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT---DG--TDVKVYTVGPDYA 263 (1266)
Q Consensus 190 fVeKpv~G-edHNI~IYyp~s~GgGv~~LfrKignkSS~y~p~s~vr~~gSyIYEEFI~t---~G--tDVKVYtVGp~~v 263 (1266)
.|.||+-| |.-||-||-. .|. .+.+..|. | .+.-+|||||.+- +| .=|=-+|||...|
T Consensus 299 yv~KPl~gREGaNv~i~~~----~~~-~~~~~~G~----Y-------g~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~c 362 (387)
T COG0754 299 YVRKPLFGREGANVSIFED----AGK-VLDKADGP----Y-------GEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEAC 362 (387)
T ss_pred hhccccccccCCCeeEEec----CCc-eeecCCCC----c-------cccchhhhhhccCcccCCeeEEEEEEEECcccc
Confidence 89999999 7677777652 122 23443331 2 2666799999983 44 5566689999988
Q ss_pred EEeeccCCCCCCceeec
Q psy10158 264 HAEARKSPALDGKVERD 280 (1266)
Q Consensus 264 hAe~RKSPvvDG~VRRN 280 (1266)
.---|+- ++.|-.|
T Consensus 363 G~glReD---~~lIt~~ 376 (387)
T COG0754 363 GIGLRED---RSLITKD 376 (387)
T ss_pred eeeeccC---cceeccc
Confidence 8888876 4444443
Done!