RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10158
(1266 letters)
>d1dkla_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Escherichia coli [TaxId: 562]}
Length = 409
Score = 53.5 bits (127), Expect = 1e-07
Identities = 47/369 (12%), Positives = 94/369 (25%), Gaps = 69/369 (18%)
Query: 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHD-LKIYASDEGRVQMTAAA 582
G LTP G LG R GLL + + I A + R + T A
Sbjct: 44 GWLTPRGGELIAYLGHYQRQRLV-----ADGLLAKKGCPQSGQVAIIADVDERTRKTGEA 98
Query: 583 FAKGLLALEGELTPILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHDLLQRDRTFTPED 642
FA GL I V ++ L N D
Sbjct: 99 FAAGLAPDCA----ITVHTQADTSSPDPLFNPLKTG-------------------VCQLD 135
Query: 643 RDKVNPCNATSINIAMDFVKNPVQCCKRIHELIHVLQHIIQKKLEDVKCKESSLYHGESW 702
V I + L+ ++ ++ K ES
Sbjct: 136 NANVTD------AILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKR--EKQDESC 187
Query: 703 ELMGRRWSKIEKDFCMKNYKYDISKIPDIYDCIKYDLQHNQHTVQFDQAEELYLNAKYMA 762
L S+++ + +S + + + + + + +
Sbjct: 188 SLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNT-LL 246
Query: 763 DIVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPG 822
+ Q Y + + ++ S+ PLL I+ L + + + L
Sbjct: 247 SLHNAQFYLLQRTPEVARSRA--TPLLDLIKTALTPHPPQKQAYGVTLPTSVL------- 297
Query: 823 RHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSELNYMSQVVIM 882
++++ +L L L ++ + ++V
Sbjct: 298 ------FIAGHDTNLANLGGAL---ELNWTLPGQPDN-------------TPPGGELVFE 335
Query: 883 LYEDPTKDP 891
+ + +
Sbjct: 336 RWRRLSDNS 344
Score = 32.3 bits (72), Expect = 0.35
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 384 MELRCVVAVIRHGDRTPKQ 402
++L VV V RHG R P +
Sbjct: 5 LKLESVVIVSRHGVRAPTK 23
>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 49.6 bits (117), Expect = 1e-06
Identities = 45/370 (12%), Positives = 91/370 (24%), Gaps = 86/370 (23%)
Query: 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTF-RHDLKIYASDEGRVQMTAAA 582
G+LT G + +G R G+++ + + YA+ R TA
Sbjct: 47 GQLTTKGGVLEVYMGHYMREWLA-----EQGMVKSGECPPPYTVYAYANSLQRTVATAQF 101
Query: 583 FAKGLLALEGELTPILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHDLLQRDRTFTPED 642
F G D H + D TF P
Sbjct: 102 FITGAFP------------------------GCDIPVHHQE------KMGTMDPTFNPVI 131
Query: 643 RDKVNPCNATSINIAMDFVKNPVQCCKRIHELIHVLQHIIQKKLEDVKCKESSLYHGESW 702
D + + AM+ + +Q L ++ + + +
Sbjct: 132 TD-DSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNY----------KDSPACKEKQQC 180
Query: 703 ELMGRRWSKIEKDFCMKNYKYDISKIPDIYDCIKYDLQHNQHTVQFDQAEELYL-NAKYM 761
L+ + + K + + D Q E K +
Sbjct: 181 SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240
Query: 762 ADIVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSP 821
+ + + + S ++ + PL+ I L + + +
Sbjct: 241 SKLKNGYQDSLFTSPEVARNVA--KPLVSYIDKALVTDRTSAPKIT-------------- 284
Query: 822 GRHVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSELNYMSQVVI 881
+ +S+I SLLT L + + ++V
Sbjct: 285 -------VLVGHDSNIASLLTAL---DFKPYQLHDQNERT------------PIGGKIVF 322
Query: 882 MLYEDPTKDP 891
+ D +
Sbjct: 323 QRWHDSKANR 332
Score = 31.5 bits (70), Expect = 0.75
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 384 MELRCVVAVIRHGDRTPKQK 403
+L+ V+ + R R P
Sbjct: 7 YQLQQVLMMSRANLRAPLAN 26
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 47.2 bits (111), Expect = 8e-06
Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 18/116 (15%)
Query: 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTF-RHDLKIYASDEGRVQMTAAA 582
G+LT G Q ELG R Y L+ ++ + I ++D R M+A
Sbjct: 36 GQLTQLGMEQHYELGEYIRKRYRK---------FLNESYKHEQVYIRSTDVDRTLMSAMT 86
Query: 583 FAKGLLALEGELT--------PILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHD 630
L EG PI V V + L + + Q + L
Sbjct: 87 NLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKS 142
Score = 31.0 bits (69), Expect = 0.89
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 385 ELRCVVAVIRHGDRTP 400
EL+ V V RHGDR+P
Sbjct: 2 ELKFVTLVFRHGDRSP 17
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 44.5 bits (104), Expect = 7e-05
Identities = 28/154 (18%), Positives = 39/154 (25%), Gaps = 22/154 (14%)
Query: 522 WGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAA 581
+LTP G Q G F Y I AS RV +
Sbjct: 94 GADDLTPFGEQQLVNSGIKFYQRYK------------ALARSVVPFIRASGSDRVIASGE 141
Query: 582 AFAKGLLALEGEL--------TPILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHDLLQ 633
F +G + I V + +S N LD+ +K +
Sbjct: 142 KFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGV-CTKFEASQLGDEV-AAN 199
Query: 634 RDRTFTPEDRDKVNPCNATSINIAMDFVKNPVQC 667
F P+ R + D V C
Sbjct: 200 FTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMC 233
Score = 29.8 bits (66), Expect = 2.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 363 PWSVPFQLDDPPFVPTTFGKMMELRCVVAVIRHGDRTP 400
P+ F L+D V + K + V + RHG R P
Sbjct: 23 PF---FSLEDELSVSSKLPKDCRITLVQVLSRHGARYP 57
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 42.7 bits (99), Expect = 1e-04
Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 29/233 (12%)
Query: 129 NNLNMQYDIQDRRKVYALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNK 188
N+L Y+ D+ V+A + + P + + + +
Sbjct: 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKF-----PLIEQTYYPNHREMLTLPT----F 51
Query: 189 PFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPT 248
P V K + E F+
Sbjct: 52 PVVVKIGH--------------AHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDA 97
Query: 249 DGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAFK 308
D++V +G +Y G + ++ + + + + +
Sbjct: 98 K-YDIRVQKIGNNYKAYMRTSIS---GNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGG 153
Query: 309 QTVCGFDLLR-ANGKSFVCDVNGFSFVKNSNKYYDDSAKILGNMILRELAPTL 360
+C + +GK ++ +V S +D +++ ++++ ++ L
Sbjct: 154 LDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVED-RQLITDLVISKMNQLL 205
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 43.7 bits (102), Expect = 1e-04
Identities = 43/367 (11%), Positives = 100/367 (27%), Gaps = 74/367 (20%)
Query: 524 GELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIYASDEGRVQMTAAAF 583
+LTP G + G F Y T I +S RV + F
Sbjct: 97 DDLTPFGEQELVNSGIKFYQRYE------------SLTRNIVPFIRSSGSSRVIASGKKF 144
Query: 584 AKGLLALEGELTPILVQMVKSANTNGLLDNDSDASKHQNIVKAKLHDLLQRDRTFTPEDR 643
+G + + ++ + D +
Sbjct: 145 IEGFQSTKL----------------------------KDPRAQPGQSSPKIDVVISEASS 176
Query: 644 DKVNPCNATSINIAMDFVKNPVQCCKRIHELIHVLQHIIQKKLEDVKCKESSLYHGESWE 703
+ +P C + + V+ ++ + +
Sbjct: 177 S--------------NNTLDPGTCTVFEDS----------ELADTVEANFTATFVPSIRQ 212
Query: 704 LMGRRWSKIEKDFCMKNYKYDISKIPDIYDCIKYDLQHNQHTVQFDQAEELYLNAKYMAD 763
+ S + Y D+ D D + + F E ++N Y+
Sbjct: 213 RLENDLSGVTLTDTEVTYLMDMCSF-DTISTSTVDTKLSPFCDLFTHDE--WINYDYLQS 269
Query: 764 IVIPQEYGMTMSEKLTISQGICVPLLKKIRADLQRNVEESEENVNRLNPQYSHGVSSPGR 823
+ + YG L +QG+ ++ A L + + + N ++
Sbjct: 270 LK--KYYGHGAGNPLGPTQGV--GYANELIARLTHSPVHDDTSSNH---TLDSSPATFPL 322
Query: 824 HVRTRLYFTSESHIHSLLTVLRYGGLTESVHMNDEQWMRAMEYVSMVSELNYMSQVVIML 883
+ F+ ++ I S+L L T+ + + + + S + + S++ + +
Sbjct: 323 NSTLYADFSHDNGIISILFALGLYNGTKPLSTTTVENITQTDGFSSAWTVPFASRLYVEM 382
Query: 884 YEDPTKD 890
+ +
Sbjct: 383 MQCQAEQ 389
Score = 31.0 bits (69), Expect = 1.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 363 PWSVPFQLDDPPFVPTTFGKMMELRCVVAVIRHGDRTP 400
P+ F L + + + + RHG R P
Sbjct: 24 PF---FSLANESVISPEVPAGCRVTFAQVLSRHGARYP 58
>d1qfxa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus niger [TaxId: 5061]}
Length = 447
Score = 43.2 bits (101), Expect = 2e-04
Identities = 20/138 (14%), Positives = 33/138 (23%), Gaps = 18/138 (13%)
Query: 510 KPKEPSLVLILKWGGELTPAGRIQAEELGRVFRCMYPGGQGNGLGLLRLHSTFRHDLKIY 569
P+ AG + A G ++ Y + +
Sbjct: 89 TYYVPNECYYNAETTSGPYAGLLDAYNHGNDYKARYGHLWNG-----------ETVVPFF 137
Query: 570 ASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANTNGLLD-------NDSDASKHQN 622
+S GRV TA F +G L + +S ND +
Sbjct: 138 SSGYGRVIETARKFGEGFFGYNYSTNAALNIISESEVMGADSLTPTCDTDNDQTTCDNLT 197
Query: 623 IVKAKLHDLLQRDRTFTP 640
+ R + P
Sbjct: 198 YQLPQFKVAAARLNSQNP 215
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 30.5 bits (68), Expect = 0.60
Identities = 14/123 (11%), Positives = 35/123 (28%)
Query: 672 HELIHVLQHIIQKKLEDVKCKESSLYHGESWELMGRRWSKIEKDFCMKNYKYDISKIPDI 731
H H+L H I++ K + + + + ++D + +
Sbjct: 11 HSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNY 70
Query: 732 YDCIKYDLQHNQHTVQFDQAEELYLNAKYMADIVIPQEYGMTMSEKLTISQGICVPLLKK 791
K H ++ E ++ + E + + +G VP ++
Sbjct: 71 DVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRF 130
Query: 792 IRA 794
Sbjct: 131 CHH 133
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 29.2 bits (64), Expect = 2.1
Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 27/186 (14%)
Query: 144 YALLEKEGIEIPRYAVLDRESPDPVKHELVESEDHVEVNGIVFNKPFVEKPVSAEDHNIY 203
L K G+ P+ A+ + + F P V KPV +
Sbjct: 5 SVALAKAGLPQPKTALA--TDREEALRLMEA-----------FGYPVVLKPVIGSWGRLL 51
Query: 204 IYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFMPTDGTDVKVYTVGPDYA 263
+++ + F ++++ G D++V+ VG
Sbjct: 52 AXXXXXXXXXXXXXXKEVLG----------GFQHQLFYIQEYVEKPGRDIRVFVVGERAI 101
Query: 264 HAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKS 323
A R+S R + + +S K A V DL +
Sbjct: 102 AAIYRRSAHWITNTARGGQAENCPLT----EEVARLSVKAAEAVGGGVVAVDLFESERGL 157
Query: 324 FVCDVN 329
V +VN
Sbjct: 158 LVNEVN 163
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 281
Score = 28.7 bits (64), Expect = 3.8
Identities = 11/111 (9%), Positives = 28/111 (25%), Gaps = 18/111 (16%)
Query: 897 FHIELHFSPGVNCCVQKNLPPGPGFRPHSRNDQKKNLPRIDQEDTEFYSTDAEDNTGSSK 956
++L + + V + + E N
Sbjct: 4 SRLKLKLNKDIVISVG-------IYNLVQK-----------ALKPPPIKLYRETNEPVKT 45
Query: 957 STSDQDSPTSAEGPSVDQSKGKFVLSQPIPITVKDLKRKNSVGDPCPSIVA 1007
T ++ T D + + S+ I + ++ + DP ++
Sbjct: 46 KTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMG 96
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 27.5 bits (61), Expect = 4.2
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 437 QEVLDIARMLLTEIENNSADPE-IEEKQGKLEQLKGVLEMYGH 478
+E L L E+E N D E I E L LKG+ G
Sbjct: 15 KEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGF 57
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA
polymerase {Bacillus stearothermophilus, newly
identified strain as yet unnamed [TaxId: 1422]}
Length = 171
Score = 27.4 bits (60), Expect = 8.5
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 285 EIRYPVILSNAEKLISRKVCLAFKQTVCGFDLLRANGKSFVCDVNGFSFVKNSNKYYDDS 344
++ + + E++++ K L + + A + G + V +++
Sbjct: 1 KMAFTLADRVTEEMLADKAALVVEVV--EENYHDA-------PIVGIAVVNEHGRFFLRP 51
Query: 345 AKILGNMILRELAPTLHIPWSVPF 368
L + S+
Sbjct: 52 ETALADPQFVAWLGDETKKKSMFD 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,750,263
Number of extensions: 234356
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 20
Length of query: 1266
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1170
Effective length of database: 1,089,516
Effective search space: 1274733720
Effective search space used: 1274733720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)