BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10159
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 149 YNTNLVFDRQGQIIAKYRKFNLF---------LEYAFDTTPQPEMITFNTDFGVTFGTFT 199
YNT+++F+ G++I K+RK +LF + +P + T +T +G FG
Sbjct: 110 YNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYG-KFGVGI 168
Query: 200 CFDILFPQPAVQLVKQKNITDFVYTAAW 227
C+D+ FP+ A+ L +K +Y +A+
Sbjct: 169 CYDMRFPELAM-LSARKGAFAMIYPSAF 195
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 44/195 (22%)
Query: 42 NAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPH 101
N + +++ A+ +I+ PEC + PY T IP +
Sbjct: 20 NLTRACSLVREAAKQGANIVSLPECFNS------------PYGTTYFPDYAEKIPGESTQ 67
Query: 102 KYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQI 161
K LS+ AK+S++Y++ + P +D + YNT VF G +
Sbjct: 68 K-------LSEVAKESSIYLIGG-----SIPEEDAGKL---------YNTCSVFGPDGSL 106
Query: 162 IAKYRKFNLF---------LEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQL 212
+ K+RK +LF + + +P TF+T + G C+D+ F + A Q+
Sbjct: 107 LVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPY-CKVGLGICYDMRFAELA-QI 164
Query: 213 VKQKNITDFVYTAAW 227
Q+ VY A+
Sbjct: 165 YAQRGCQLLVYPGAF 179
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 33/137 (24%)
Query: 35 ARDLMESNAEQYVRIIQ--NASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92
+R ++ N E +R + A V++I+FPE G K ++ +L+ +P E
Sbjct: 28 SRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSE--EFLLDVPGKET 85
Query: 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYH-YNT 151
+ +KA K++ +Y V ++ E R D N + YNT
Sbjct: 86 E---------------LYAKACKEAKVYGVFSIME-------------RNPDSNKNPYNT 117
Query: 152 NLVFDRQGQIIAKYRKF 168
++ D QG+II KYRK
Sbjct: 118 AIIIDPQGEIILKYRKL 134
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 33/137 (24%)
Query: 35 ARDLMESNAEQYVRIIQ--NASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92
+R ++ N E +R + A V++I+FPE G K ++ +L+ +P E
Sbjct: 28 SRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSE--EFLLDVPGKET 85
Query: 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYH-YNT 151
+ +KA K++ +Y V ++ E R D N + YNT
Sbjct: 86 E---------------LYAKACKEAKVYGVFSIME-------------RNPDSNKNPYNT 117
Query: 152 NLVFDRQGQIIAKYRKF 168
++ D QG+II KYRK
Sbjct: 118 AIIIDPQGEIILKYRKL 134
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 36/169 (21%)
Query: 2 VQHARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNY--DVD 59
++H SSS + AVV Y +P AA L NA + +I +D
Sbjct: 1 MRHGDISSSNDTVGVAVVNYK-----MPRLHTAAEVL--DNARKIAEMIVGMKQGLPGMD 53
Query: 60 IIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNM 119
++VFPE L G + A++ + IP E + S+A + +N+
Sbjct: 54 LVVFPEYSLQG--IMYDPAEMMETAVAIPGEETE---------------IFSRACRKANV 96
Query: 120 YVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKF 168
+ V F + ++ R YNT ++ D G+I+ KYRK
Sbjct: 97 WGV---FSLTGERHEEHP-------RKAPYNTLVLIDNNGEIVQKYRKI 135
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 144 DRNYHYNTNLVFDRQGQIIAKYRKFNLF----------LEYAFDTTPQPEMITFNTDFGV 193
D + +NT+L+ D G A+Y K +LF +E F + +T G
Sbjct: 104 DAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIG- 162
Query: 194 TFGTFTCFDILFPQ 207
G C+D+ FP+
Sbjct: 163 RLGLSICYDVRFPE 176
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 34 AARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93
A + E + + ++ NA++ V+ IVFPE L T P+ T E
Sbjct: 16 ARAETREQVVGRLLDMLTNAASRGVNFIVFPELALT-TFFPRWHF----------TDEAE 64
Query: 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNL 153
+ E ++ L + A + + + E+V + + R +NT++
Sbjct: 65 LDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVV-----EGGVKR------RFNTSI 113
Query: 154 VFDRQGQIIAKYRKFNL 170
+ D+ G+I+ KYRK +L
Sbjct: 114 LVDKSGKIVGKYRKIHL 130
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 34 AARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93
A + E + + ++ NA++ V+ IVFPE L T P+ T E
Sbjct: 16 ARAETREQVVGRLLDMLTNAASRGVNFIVFPELALT-TFFPRWHF----------TDEAE 64
Query: 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNL 153
+ E ++ L + A + + + E+V + + R +NT++
Sbjct: 65 LDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVV-----EGGVKR------RFNTSI 113
Query: 154 VFDRQGQIIAKYRKFNL 170
+ D+ G+I+ KYRK +L
Sbjct: 114 LVDKSGKIVGKYRKIHL 130
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 34 AARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93
A + E + + ++ NA++ V+ IVFPE L T P+ T E
Sbjct: 16 ARAETREQVVGRLLDMLTNAASRGVNFIVFPELALT-TFFPRWHF----------TDEAE 64
Query: 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNL 153
+ E ++ L + A + + + E+V + + R +NT++
Sbjct: 65 LDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVV-----EGGVKR------RFNTSI 113
Query: 154 VFDRQGQIIAKYRKFNL 170
+ D+ G+I+ KYRK +L
Sbjct: 114 LVDKSGKIVGKYRKIHL 130
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 149 YNTNLVFDRQGQIIAKYRKFNL 170
+NT+++ D+ G+I+ KYRK +L
Sbjct: 108 FNTSILVDKSGKIVGKYRKIHL 129
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 149 YNTNLVFDRQGQIIAKYRKFNL 170
+NT+++ D+ G+I+ KYRK +L
Sbjct: 108 FNTSILVDKSGKIVGKYRKIHL 129
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 149 YNTNLVFDRQGQIIAKYRKFNL---FLEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILF 205
+NT ++ GQ+I +Y K +L E+ F T + F G C+D+ F
Sbjct: 112 FNTAFSVNKSGQLINEYDKVHLVPXLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRF 171
Query: 206 PQ 207
P+
Sbjct: 172 PE 173
>pdb|3QIL|A Chain A, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|B Chain B, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|C Chain C, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|D Chain D, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|E Chain E, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|F Chain F, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|G Chain G, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|H Chain H, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|I Chain I, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|J Chain J, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|K Chain K, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|L Chain L, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|M Chain M, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|N Chain N, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|O Chain O, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|P Chain P, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|Q Chain Q, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|R Chain R, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|S Chain S, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|T Chain T, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|U Chain U, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|V Chain V, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|W Chain W, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
pdb|3QIL|X Chain X, Crystal Structure Analysis Of The Clathrin Trimerization
Domain
Length = 125
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 198 FTCFDILFPQPAVQLVKQKNITDF 221
FTC+D+L P ++L + NI DF
Sbjct: 72 FTCYDLLRPDVVLELAWRHNIMDF 95
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 438 MKTIAIPSTLNSSIIPL--------DVADYTFTNDGKSI--QMNLVNPSTDLITFAVYKL 487
+ T+A+ + + SS+ P+ D+ D+T TNDG +I +++ +P+ ++ +
Sbjct: 31 LATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQ 90
Query: 488 PREV 491
RE+
Sbjct: 91 DREI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,907,622
Number of Sequences: 62578
Number of extensions: 620890
Number of successful extensions: 1284
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 22
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)