Query psy10159
Match_columns 492
No_of_seqs 244 out of 1597
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07567 biotinidase_like bioti 100.0 2.1E-46 4.5E-51 378.1 30.8 273 14-298 1-278 (299)
2 cd07587 ML_beta-AS mammalian-l 100.0 1.2E-39 2.6E-44 337.4 25.3 257 10-298 60-339 (363)
3 cd07565 aliphatic_amidase alip 100.0 3E-39 6.5E-44 325.7 27.0 245 14-298 1-250 (291)
4 cd07579 nitrilase_1_R2 Second 100.0 1.8E-39 4E-44 325.4 25.4 233 15-298 1-253 (279)
5 TIGR03381 agmatine_aguB N-carb 100.0 2.4E-39 5.2E-44 323.4 26.1 241 14-298 1-258 (279)
6 cd07576 R-amidase_like Pseudom 100.0 1.4E-38 3E-43 313.5 25.4 235 15-298 1-238 (254)
7 cd07584 nitrilase_6 Uncharacte 100.0 1.9E-38 4.1E-43 313.6 26.1 241 15-298 1-243 (258)
8 KOG0806|consensus 100.0 2.7E-39 5.8E-44 317.8 18.9 247 11-296 11-261 (298)
9 cd07564 nitrilases_CHs Nitrila 100.0 2.9E-38 6.4E-43 319.3 26.0 246 14-298 1-272 (297)
10 cd07580 nitrilase_2 Uncharacte 100.0 1.6E-38 3.4E-43 316.2 23.5 240 15-298 1-248 (268)
11 cd07583 nitrilase_5 Uncharacte 100.0 3.5E-38 7.5E-43 310.9 25.2 235 15-298 1-239 (253)
12 PRK10438 C-N hydrolase family 100.0 4.4E-38 9.6E-43 311.6 26.0 229 13-297 3-236 (256)
13 PLN00202 beta-ureidopropionase 100.0 4E-38 8.8E-43 329.6 26.4 254 11-298 84-360 (405)
14 PLN02504 nitrilase 100.0 7.4E-38 1.6E-42 322.4 27.1 252 11-298 22-300 (346)
15 cd07578 nitrilase_1_R1 First n 100.0 6.3E-38 1.4E-42 310.3 25.3 237 14-298 1-240 (258)
16 PRK13286 amiE acylamide amidoh 100.0 1E-37 2.2E-42 320.6 27.1 258 2-298 1-263 (345)
17 cd07568 ML_beta-AS_like mammal 100.0 1.2E-37 2.5E-42 313.0 26.9 251 12-297 2-262 (287)
18 PLN02798 nitrilase 100.0 8.7E-38 1.9E-42 314.2 25.7 243 10-298 7-264 (286)
19 cd07577 Ph0642_like Pyrococcus 100.0 7.3E-38 1.6E-42 309.9 23.6 232 15-298 1-239 (259)
20 cd07581 nitrilase_3 Uncharacte 100.0 2.6E-37 5.5E-42 304.8 25.9 234 16-298 1-241 (255)
21 PLN02747 N-carbamolyputrescine 100.0 3.3E-37 7.1E-42 311.3 26.3 242 13-298 6-268 (296)
22 cd07582 nitrilase_4 Uncharacte 100.0 7.4E-37 1.6E-41 308.6 27.4 250 14-297 1-275 (294)
23 cd07585 nitrilase_7 Uncharacte 100.0 7.2E-37 1.6E-41 302.8 26.7 236 15-298 1-241 (261)
24 PRK13287 amiF formamidase; Pro 100.0 1.5E-36 3.2E-41 311.2 28.6 253 5-298 5-262 (333)
25 cd07573 CPA N-carbamoylputresc 100.0 1.2E-36 2.7E-41 304.8 26.8 242 14-298 1-261 (284)
26 cd07572 nit Nit1, Nit 2, and r 100.0 6.4E-37 1.4E-41 303.5 24.0 238 15-298 1-251 (265)
27 cd07569 DCase N-carbamyl-D-ami 100.0 3.4E-36 7.4E-41 304.9 25.9 247 13-298 3-278 (302)
28 cd07571 ALP_N-acyl_transferase 100.0 3E-36 6.4E-41 300.8 24.5 229 14-297 1-251 (270)
29 COG0388 Predicted amidohydrola 100.0 5.6E-36 1.2E-40 298.9 26.0 240 13-298 2-249 (274)
30 cd07574 nitrilase_Rim1_like Un 100.0 8E-36 1.7E-40 298.5 24.7 243 14-298 1-261 (280)
31 cd07197 nitrilase Nitrilase su 100.0 1.9E-35 4.2E-40 289.8 26.0 236 16-298 1-239 (253)
32 cd07570 GAT_Gln-NAD-synth Glut 100.0 4.7E-36 1E-40 297.0 21.0 234 15-297 1-242 (261)
33 cd07586 nitrilase_8 Uncharacte 100.0 1.6E-35 3.6E-40 294.4 23.6 235 15-298 1-247 (269)
34 cd07575 Xc-1258_like Xanthomon 100.0 6.2E-35 1.4E-39 288.1 24.6 230 14-298 1-235 (252)
35 KOG0807|consensus 100.0 2.8E-35 6.1E-40 276.8 16.1 246 8-297 10-269 (295)
36 cd07566 ScNTA1_like Saccharomy 100.0 8.2E-34 1.8E-38 286.5 20.2 215 15-270 1-264 (295)
37 PRK13981 NAD synthetase; Provi 100.0 8.4E-33 1.8E-37 301.0 24.9 234 14-297 1-243 (540)
38 PRK02628 nadE NAD synthetase; 100.0 4.9E-31 1.1E-35 293.2 23.7 241 9-296 8-279 (679)
39 PRK00302 lnt apolipoprotein N- 100.0 7.7E-31 1.7E-35 283.6 23.2 232 11-297 217-471 (505)
40 TIGR00546 lnt apolipoprotein N 100.0 1.4E-30 2.9E-35 273.2 20.2 212 11-276 157-391 (391)
41 PLN02339 NAD+ synthase (glutam 100.0 4.6E-30 1E-34 285.1 22.1 237 13-297 3-276 (700)
42 PF00795 CN_hydrolase: Carbon- 100.0 1E-27 2.2E-32 225.0 14.1 174 15-226 1-186 (186)
43 KOG0805|consensus 99.9 4.7E-26 1E-30 215.1 18.2 245 9-298 13-293 (337)
44 COG0815 Lnt Apolipoprotein N-a 99.9 1.1E-24 2.5E-29 234.0 22.2 239 7-298 221-483 (518)
45 PRK12291 apolipoprotein N-acyl 99.9 1.4E-24 3E-29 228.9 21.4 194 14-273 195-412 (418)
46 KOG0808|consensus 99.9 1.2E-23 2.5E-28 200.2 17.5 258 11-300 71-351 (387)
47 PRK13825 conjugal transfer pro 99.8 9.8E-20 2.1E-24 189.9 17.8 165 41-255 206-386 (388)
48 KOG2303|consensus 99.0 7E-10 1.5E-14 114.8 8.3 239 12-298 3-278 (706)
49 cd07565 aliphatic_amidase alip 86.7 4 8.6E-05 41.2 9.4 45 106-164 187-232 (291)
50 PRK13286 amiE acylamide amidoh 83.3 6.7 0.00015 40.8 9.4 72 48-164 173-245 (345)
51 KOG0806|consensus 80.3 1.8 4E-05 43.7 3.8 61 235-297 208-272 (298)
52 cd07583 nitrilase_5 Uncharacte 80.1 7.7 0.00017 37.8 8.2 71 49-164 151-222 (253)
53 cd07585 nitrilase_7 Uncharacte 79.3 11 0.00023 37.0 8.9 47 105-165 177-224 (261)
54 cd07584 nitrilase_6 Uncharacte 79.0 11 0.00023 36.9 8.8 42 109-164 183-225 (258)
55 cd07572 nit Nit1, Nit 2, and r 78.7 7.2 0.00016 38.2 7.5 72 49-164 161-234 (265)
56 cd07570 GAT_Gln-NAD-synth Glut 75.5 11 0.00023 37.0 7.7 44 107-164 183-227 (261)
57 cd07580 nitrilase_2 Uncharacte 72.8 22 0.00047 35.0 9.2 42 109-164 187-229 (268)
58 COG1504 Uncharacterized conser 71.9 5.9 0.00013 34.2 4.0 74 145-227 15-99 (121)
59 PLN02798 nitrilase 70.8 19 0.0004 36.1 8.2 44 107-164 200-245 (286)
60 cd07586 nitrilase_8 Uncharacte 65.6 31 0.00067 33.9 8.5 46 105-164 183-229 (269)
61 cd07567 biotinidase_like bioti 65.5 22 0.00047 36.3 7.5 43 107-166 217-261 (299)
62 cd07576 R-amidase_like Pseudom 65.2 28 0.00061 33.7 8.1 71 208-279 24-106 (254)
63 PRK13287 amiF formamidase; Pro 64.6 38 0.00083 35.0 9.2 40 110-164 203-244 (333)
64 PRK13981 NAD synthetase; Provi 64.5 26 0.00056 38.6 8.5 44 107-164 182-226 (540)
65 KOG0807|consensus 63.6 9.9 0.00022 37.4 4.3 70 54-166 183-253 (295)
66 PLN02504 nitrilase 62.9 27 0.00059 36.2 7.8 68 212-280 53-150 (346)
67 TIGR03381 agmatine_aguB N-carb 61.9 31 0.00066 34.1 7.7 72 208-280 24-111 (279)
68 cd07582 nitrilase_4 Uncharacte 60.2 50 0.0011 33.1 9.0 45 109-164 211-257 (294)
69 PRK10438 C-N hydrolase family 60.1 37 0.00081 33.4 7.9 46 106-164 173-219 (256)
70 cd07573 CPA N-carbamoylputresc 58.9 59 0.0013 32.1 9.2 48 106-164 194-243 (284)
71 cd07587 ML_beta-AS mammalian-l 58.9 35 0.00076 35.7 7.8 56 107-163 261-320 (363)
72 cd07564 nitrilases_CHs Nitrila 58.7 38 0.00082 34.1 7.8 72 208-280 25-121 (297)
73 cd07581 nitrilase_3 Uncharacte 58.4 36 0.00078 33.0 7.4 72 208-280 22-107 (255)
74 cd07197 nitrilase Nitrilase su 57.6 41 0.0009 32.3 7.7 68 210-278 25-106 (253)
75 cd07568 ML_beta-AS_like mammal 57.2 61 0.0013 32.2 9.0 44 110-164 201-245 (287)
76 COG0388 Predicted amidohydrola 55.8 62 0.0013 31.9 8.7 69 54-165 163-232 (274)
77 cd07569 DCase N-carbamyl-D-ami 55.3 60 0.0013 32.7 8.6 39 111-164 220-260 (302)
78 PLN02747 N-carbamolyputrescine 55.2 36 0.00079 34.1 7.0 71 208-279 30-116 (296)
79 PF00795 CN_hydrolase: Carbon- 53.9 29 0.00062 31.8 5.6 67 210-277 28-113 (186)
80 cd07578 nitrilase_1_R1 First n 53.9 58 0.0013 31.8 8.1 40 112-164 184-223 (258)
81 PLN00202 beta-ureidopropionase 53.7 58 0.0012 34.7 8.5 58 106-164 281-342 (405)
82 cd07577 Ph0642_like Pyrococcus 48.5 86 0.0019 30.6 8.3 44 110-164 176-221 (259)
83 PRK15018 1-acyl-sn-glycerol-3- 44.1 45 0.00099 32.8 5.5 32 38-69 120-151 (245)
84 PRK09856 fructoselysine 3-epim 42.3 58 0.0013 32.0 6.1 64 38-123 84-147 (275)
85 cd07579 nitrilase_1_R2 Second 41.2 98 0.0021 30.9 7.5 41 213-254 28-77 (279)
86 PF01553 Acyltransferase: Acyl 40.0 58 0.0013 27.7 5.0 17 53-69 87-103 (132)
87 TIGR00530 AGP_acyltrn 1-acyl-s 38.0 76 0.0016 26.9 5.4 25 45-69 77-101 (130)
88 cd07574 nitrilase_Rim1_like Un 33.4 1.8E+02 0.0038 28.7 7.9 16 109-124 191-206 (280)
89 PF09587 PGA_cap: Bacterial ca 30.0 1.8E+02 0.004 28.3 7.3 77 43-161 170-246 (250)
90 TIGR00542 hxl6Piso_put hexulos 29.7 1.4E+02 0.003 29.5 6.5 65 38-124 88-152 (279)
91 cd07566 ScNTA1_like Saccharomy 28.8 2E+02 0.0044 29.0 7.5 65 216-280 35-117 (295)
92 COG1126 GlnQ ABC-type polar am 28.2 89 0.0019 30.7 4.5 81 49-173 146-226 (240)
93 cd07571 ALP_N-acyl_transferase 27.8 1.1E+02 0.0025 30.1 5.5 63 216-278 38-104 (270)
94 PF14488 DUF4434: Domain of un 27.2 1.9E+02 0.0042 26.7 6.5 65 47-127 23-87 (166)
95 PRK13210 putative L-xylulose 5 24.8 1.6E+02 0.0035 28.9 5.9 64 38-123 88-151 (284)
96 cd07491 Peptidases_S8_7 Peptid 22.5 2.5E+02 0.0053 27.5 6.6 59 43-128 88-146 (247)
97 COG1120 FepC ABC-type cobalami 22.0 1.7E+02 0.0038 29.2 5.4 53 48-128 147-199 (258)
98 PRK13209 L-xylulose 5-phosphat 21.6 1.7E+02 0.0037 28.8 5.4 64 38-123 93-156 (283)
99 smart00563 PlsC Phosphate acyl 21.4 1.3E+02 0.0027 24.7 3.8 28 41-69 60-87 (118)
100 PF01784 NIF3: NIF3 (NGG1p int 21.4 2.4E+02 0.0052 27.5 6.3 58 196-256 34-96 (241)
101 PF02630 SCO1-SenC: SCO1/SenC; 21.2 1.7E+02 0.0038 26.9 5.0 98 39-166 71-172 (174)
102 cd00019 AP2Ec AP endonuclease 20.5 1.8E+02 0.0038 28.7 5.2 63 38-123 79-141 (279)
103 cd07993 LPLAT_DHAPAT-like Lyso 20.0 2.4E+02 0.0053 26.5 5.9 26 44-69 88-113 (205)
No 1
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=2.1e-46 Score=378.14 Aligned_cols=273 Identities=47% Similarity=0.770 Sum_probs=222.4
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
|+||+||+.|. |.+ ...+.+++++|+++++++|++|+++|||||||||++++||... ......+.+.+|.+...
T Consensus 1 ~~~~~~~~~~~--~~~--~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~--~~~~~~~~~~~~~~~~~ 74 (299)
T cd07567 1 YIAAVVEHHPI--LSP--DPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFT--RFVIYPFLEDVPDPEVN 74 (299)
T ss_pred CEEEEEEEEee--ccC--CccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCC--ccccCchhccccccccc
Confidence 78999999999 662 2256779999999999999999999999999999999999862 22222334455555445
Q ss_pred CCCCCC--CCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC
Q psy10159 94 AIPYQE--PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF 171 (492)
Q Consensus 94 ~~pc~~--~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf 171 (492)
|.+|.. ....++.++.|+++||+++++|++|+.++.++.. .++.|+. ++.++|||+++|+++|+++++|||+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~--~~~~~~~-~~~~~yNsa~vi~~~G~iv~~YrK~hLf 151 (299)
T cd07567 75 WNPCLDPDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDS--SDPHCPP-DGRYQYNTNVVFDRDGTLIARYRKYNLF 151 (299)
T ss_pred ccccccccccCchHHHHHHHHHHHHhCeEEEecccccccccc--ccccCCC-CCCceeEEEEEEcCCCCccceEeecccc
Confidence 555532 1245689999999999999999999988754321 1244543 4447999999999999999999999999
Q ss_pred ccCcccCCCC-CCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhC-CCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCc
Q psy10159 172 LEYAFDTTPQ-PEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQK-NITDFVYTAAWMSELPLLTAVTVHSSWAFSMDV 249 (492)
Q Consensus 172 ~e~~~~~~~g-~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~-Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v 249 (492)
+|.. .+.+| .++.+|+|++|+|||++||||++|||++|.+++ + |+|+|++|++|+...+..++..++++||++|++
T Consensus 152 ~E~~-~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~-~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~ 229 (299)
T cd07567 152 GEPG-FDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVK-KLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGV 229 (299)
T ss_pred cccc-ccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHH-hCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCc
Confidence 7665 45566 478999999878999999999999999999999 7 999999999998765666777889999999999
Q ss_pred eEEEeCCcCCCCcCCCccEEECCC-CcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 250 NLLSSNYNNPAQYGGGSGIYAGRQ-GIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 250 ~vlaan~~~~~~~~~Gssi~~~~~-G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+|++||+.|+. .+.|.|.+++|+ |.++++....+++++++++||++..
T Consensus 230 ~vi~~N~~g~~-~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~ 278 (299)
T cd07567 230 NLLAANYNNPS-AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPS 278 (299)
T ss_pred eEEEecCCCCc-CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcc
Confidence 99999999875 356889999999 9999997544467899999998854
No 2
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.2e-39 Score=337.37 Aligned_cols=257 Identities=16% Similarity=0.125 Sum_probs=202.6
Q ss_pred CCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCC
Q psy10159 10 SREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPT 89 (492)
Q Consensus 10 ~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~ 89 (492)
....++||++|+.+. +. . .+....+.++|++++.++|++|+++|||||||||++++||.+. .++.. +|.+.. +
T Consensus 60 ~~~~~rIAlvQ~~~~--~~-~-~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~-~~~~~-~~~~~a-e 132 (363)
T cd07587 60 PPRIVRVGLIQNKIV--LP-T-TAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFC-TREKL-PWCEFA-E 132 (363)
T ss_pred CCceEEEEEEecccc--cc-c-cCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCcccc-ccccc-hHHHHh-h
Confidence 355799999999866 21 0 1112238999999999999999999999999999999998752 11110 111100 0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCC
Q psy10159 90 PEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFN 169 (492)
Q Consensus 90 ~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~ 169 (492)
+ ...++.++.|+++|++++|+|++|+.++.. . .++.+|||+++|+++|+++++|||+|
T Consensus 133 ------~----~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~-----------~-~~~~~yNta~vi~~~G~ilg~yrK~h 190 (363)
T cd07587 133 ------S----AEDGPTTKFCQELAKKYNMVIVSPILERDE-----------E-HGDTIWNTAVVISNSGNVLGKSRKNH 190 (363)
T ss_pred ------c----cCCChHHHHHHHHHHHcCcEEEEeeeeeec-----------C-CCCcEEEEEEEECCCCCEEeeeeeEe
Confidence 0 123678999999999999999999988731 0 14689999999999999999999999
Q ss_pred CCc----cCcccCCCCCC-ceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHh
Q psy10159 170 LFL----EYAFDTTPQPE-MITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWA 244 (492)
Q Consensus 170 Lf~----e~~~~~~~g~e-~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A 244 (492)
||. .+..++.+|.. +.+|+|++| |||++||||++|||.++.+++ +|||+|++|++|+.......|....++||
T Consensus 191 L~~~~~~~E~~~f~~G~~~~~vf~t~~g-riG~~ICyD~~fPe~~r~la~-~GAdiil~Psa~~~~~~~~~w~~~~rarA 268 (363)
T cd07587 191 IPRVGDFNESTYYMEGNTGHPVFETQFG-KIAVNICYGRHHPLNWLMYGL-NGAEIVFNPSATVGALSEPMWPIEARNAA 268 (363)
T ss_pred cCCCCCccceeEEecCCCCCceEEcCCc-eEEEEEecccCCcHHHHHHHH-cCCcEEEECCCcCCCCchHHHHHHHHHHH
Confidence 974 23345778864 789999955 999999999999999999999 99999999999975432224556789999
Q ss_pred hhCCceEEEeCCcCCC------------------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 245 FSMDVNLLSSNYNNPA------------------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 245 ~en~v~vlaan~~~~~------------------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|+++|+++|+.|.. ..+.|+|++++|+|++++.+... ++++++++||++..
T Consensus 269 ieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~-~E~ll~adiDl~~i 339 (363)
T cd07587 269 IANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRT-RDGLLVAELDLNLC 339 (363)
T ss_pred HhcCcEEEEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCCC-CCcEEEEEecHHHH
Confidence 9999999999999854 23679999999999998887533 57899999998854
No 3
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=3e-39 Score=325.74 Aligned_cols=245 Identities=18% Similarity=0.228 Sum_probs=198.3
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhc--CCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASN--YDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPE 91 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~--~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~ 91 (492)
+.||++|+++. .. ....++++|++++.++|++|++ +|+|||||||++++||.+ .......+.+
T Consensus 1 ~~Ia~~Q~~~~--~~-----~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~--~~~~~~~~a~------ 65 (291)
T cd07565 1 VGVAVVQYKVP--VL-----HTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMY--DKWTMDETAC------ 65 (291)
T ss_pred CeEEEEecccc--cc-----cccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCC--Ccchhhhhcc------
Confidence 36899999873 11 0112899999999999999986 599999999999999975 1111111111
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC
Q psy10159 92 DHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF 171 (492)
Q Consensus 92 ~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf 171 (492)
...++.++.|+++|++++++|++|+.++.. . .++++|||+++|+|+|+++++|||+|||
T Consensus 66 ---------~~~~~~~~~l~~lA~~~~i~i~~g~~e~~~-----------~-~~~~~yNsa~~i~~~G~i~~~YrK~hl~ 124 (291)
T cd07565 66 ---------TVPGPETDIFAEACKEAKVWGVFSIMERNP-----------D-HGKNPYNTAIIIDDQGEIVLKYRKLHPW 124 (291)
T ss_pred ---------CCCChhHHHHHHHHHHCCeEEEEEeeeecC-----------C-CCCceEEEEEEECCCCcEEEEEEecccC
Confidence 123577899999999999999999888731 0 1157999999999999999999999998
Q ss_pred ccCcccCCCCCC-ceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCce
Q psy10159 172 LEYAFDTTPQPE-MITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVN 250 (492)
Q Consensus 172 ~e~~~~~~~g~e-~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~ 250 (492)
.+.. .+.+|++ +.+|+|+.|+|||++||||++|||++|.+++ +|||+|++|++|+.... .++....++||+||+++
T Consensus 125 ~~~e-~~~~G~~~~~v~~~~~g~riG~~ICyD~~fPe~~r~la~-~GAdill~ps~~~~~~~-~~w~~~~~aRA~En~~~ 201 (291)
T cd07565 125 VPIE-PWYPGDLGTPVCEGPKGSKIALIICHDGMYPEIARECAY-KGAELIIRIQGYMYPAK-DQWIITNKANAWCNLMY 201 (291)
T ss_pred CCcc-cccCCCCCceeeECCCCCEEEEEEEcCCCCcHHHHHHHH-CCCeEEEECCcCCCCcc-hHHHHHHHHHHHhcCcE
Confidence 6443 3678887 8899998789999999999999999999999 99999999999975433 34556789999999999
Q ss_pred EEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 251 LLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 251 vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+++||..|.. ..+.|.|+++||+|+++++++.. +++++++++|++..
T Consensus 202 vv~aN~~G~~~~~~~~G~S~ivdP~G~ila~~~~~-~e~i~~adid~~~~ 250 (291)
T cd07565 202 TASVNLAGFDGVFSYFGESMIVNFDGRTLGEGGRE-PDEIVTAELSPSLV 250 (291)
T ss_pred EEEecccccCCCceeeeeeEEECCCCCEEEeCCCC-CCcEEEEEEcHHHH
Confidence 9999999864 34679999999999999998754 57899999998743
No 4
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.8e-39 Score=325.41 Aligned_cols=233 Identities=19% Similarity=0.224 Sum_probs=193.5
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+++. . +.++|+++++++|++|+++|+|||||||++++||... .....
T Consensus 1 ria~~Q~~~~---~---------d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~----------~~~~~----- 53 (279)
T cd07579 1 RIAVAQFAPT---P---------DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP----------ASEAE----- 53 (279)
T ss_pred CEEEEeccCc---c---------CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh----------HHhcc-----
Confidence 5899999887 3 7899999999999999999999999999999998651 11101
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCccC
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEY 174 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e~ 174 (492)
...++.++.|+++|++++++|++|+.++ +++++||++++|+++| ++++|+|.||+..+
T Consensus 54 ------~~~~~~~~~l~~lA~~~~i~iv~G~~~~---------------~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~~E 111 (279)
T cd07579 54 ------SDTGPAVSALRRLARRLRLYLVAGFAEA---------------DGDGLYNSAVLVGPEG-LVGTYRKTHLIEPE 111 (279)
T ss_pred ------cCCCHHHHHHHHHHHHcCeEEEEeceEc---------------cCCcEEEEEEEEeCCe-eEEEEecccCCCcc
Confidence 1235789999999999999999999887 4457999999999999 78999999999766
Q ss_pred cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCC-------------Ch--h---hHH
Q psy10159 175 AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSE-------------LP--L---LTA 236 (492)
Q Consensus 175 ~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~-------------~p--~---l~~ 236 (492)
..++.+|+++.+|++++ +|||++||||++|||++|.+++ +||++|++|++|... .| . ..+
T Consensus 112 ~~~f~~G~~~~v~~~~~-~kiG~~ICyD~~fPe~~r~~a~-~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (279)
T cd07579 112 RSWATPGDTWPVYDLPL-GRVGLLIGHDALFPEAGRVLAL-RGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTH 189 (279)
T ss_pred hhhccCCCCCeeEEcCc-eeEEEEEeccccCcHHHHHHHH-CCCCEEEECCCcCCccccccccccccCCCCCcCccchhH
Confidence 55788999999999994 5999999999999999999999 999999999998531 01 0 123
Q ss_pred HHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCcEEEE--cCCCCCCeEEEEEeeCCCC
Q psy10159 237 VTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIKVAV--MPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 237 ~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~--~~~~~~~~llva~v~~~~~ 298 (492)
+++.++||+||++++++||..|....+.|.|.++||+|.++.. .....++++++++||++.-
T Consensus 190 w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~P~G~v~~~~~~~~~~~e~~l~a~id~~~~ 253 (279)
T cd07579 190 WHLARVRAGENNVYFAFANVPDPARGYTGWSGVFGPDTFAFPRQEAAIGDEEGIAWALIDTSNL 253 (279)
T ss_pred HHHhHhHHhhCCeEEEEeeccCCccccccccEEECCCeEEcchhhcccCCCCcEEEEEecchhh
Confidence 3468999999999999999998765678999999999999743 1112357899999998853
No 5
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=2.4e-39 Score=323.41 Aligned_cols=241 Identities=21% Similarity=0.211 Sum_probs=196.8
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
++||++|+++. . +.++|+++++++|++|+++|||||||||++++||...+.+. .+++
T Consensus 1 ~~ia~~Q~~~~---~---------d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~---~~~~-------- 57 (279)
T TIGR03381 1 VTVAALQMACS---D---------DVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDE---DYFA-------- 57 (279)
T ss_pred CEEEEEEeecc---C---------CHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCcccc---chHh--------
Confidence 58999999875 3 79999999999999999999999999999999996520000 0000
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCcc
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLE 173 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e 173 (492)
.+.. ...++.++.|+++|++++++|++|+.++ +++++||++++|+++|+++++|+|.||+..
T Consensus 58 --~a~~-~~~~~~~~~l~~~a~~~~i~i~~g~~~~---------------~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~ 119 (279)
T TIGR03381 58 --LAQP-VEGHPAIKRFQALAKELGVVIPVSFFEK---------------AGNAYYNSLAMIDADGSVLGVYRKSHIPDG 119 (279)
T ss_pred --hcCc-CCCChHHHHHHHHHHHcCcEEEEeeeec---------------CCCceEEeEEEECCCCCEEEEEEeeecCCC
Confidence 0110 1235789999999999999999999887 456799999999999999999999999742
Q ss_pred ----CcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCC------hhhHHHHHHHH
Q psy10159 174 ----YAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSEL------PLLTAVTVHSS 242 (492)
Q Consensus 174 ----~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~------p~l~~~~~~~~ 242 (492)
+..++.+|. .+.+|+|++ +|||++||||++|||+++.+++ +||++|++|++|.... ....+....++
T Consensus 120 ~~~~E~~~f~~G~~~~~~f~~~~-~~ig~~IC~D~~fpe~~r~~a~-~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~ 197 (279)
T TIGR03381 120 PGYQEKFYFRPGDTGFKVWDTRY-GRIGVGICWDQWFPETARAMAL-MGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQG 197 (279)
T ss_pred CCcccceeEccCCCCCceEecCC-ceEEEEEEcCCcChHHHHHHHH-cCCCEEEecCccCCCCcccccccHHHHHHHHHH
Confidence 344678887 589999995 5999999999999999999999 9999999999986421 11234456788
Q ss_pred HhhhCCceEEEeCCcCCC------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 243 WAFSMDVNLLSSNYNNPA------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 243 ~A~en~v~vlaan~~~~~------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
||++|++++++||..|+. ..+.|.|.+++|+|++++.++.+ +++++++++|++..
T Consensus 198 rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~-~e~~~~~~id~~~~ 258 (279)
T TIGR03381 198 HAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADHTGELVAEAGRS-EEAVLVATFDLDEI 258 (279)
T ss_pred HHHhCCCeEEEEecccccCCCCCcceEeeeEEEECCCCcEeecCCCC-CCceEEEEeCHHHH
Confidence 999999999999998754 23569999999999999998754 67999999998743
No 6
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.4e-38 Score=313.52 Aligned_cols=235 Identities=21% Similarity=0.249 Sum_probs=198.2
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. .. +.+.|++++.++|++|+++|+|||||||++++||... +.....
T Consensus 1 kva~~Q~~~~--~~---------d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~----------~~~~~~---- 55 (254)
T cd07576 1 RLALYQGPAR--DG---------DVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIG----------DAVARL---- 55 (254)
T ss_pred CEEEEecCCC--CC---------CHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCc----------chhhhh----
Confidence 5899999986 34 7999999999999999999999999999999999762 111000
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc-c
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL-E 173 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~-e 173 (492)
+. ....+.++.|+++|++++++|++|++++ +++++||+.++|+++|+++++|+|.|||+ .
T Consensus 56 --~~--~~~~~~~~~l~~~a~~~~~~ii~G~~~~---------------~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~ 116 (254)
T cd07576 56 --AE--PADGPALQALRAIARRHGIAIVVGYPER---------------AGGAVYNAAVLIDEDGTVLANYRKTHLFGDS 116 (254)
T ss_pred --hc--ccCChHHHHHHHHHHHcCCEEEEecccc---------------CCCceEEEEEEECCCCCEeeEEEeeccCCcc
Confidence 11 1235789999999999999999999887 44679999999999999999999999987 3
Q ss_pred CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEEE
Q psy10159 174 YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLS 253 (492)
Q Consensus 174 ~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vla 253 (492)
+..++.+|.++.+|+++ |+|||++||||++|||+++.+++ +|||+|++|++|..... ..+..+.++||++|++++++
T Consensus 117 E~~~~~~G~~~~v~~~~-~~kig~~IC~D~~fpe~~~~~~~-~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~ 193 (254)
T cd07576 117 ERAAFTPGDRFPVVELR-GLRVGLLICYDVEFPELVRALAL-AGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAY 193 (254)
T ss_pred hhhhccCCCCceEEEEC-CeEEEEEEeecCCCCHHHHHHHH-CCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEE
Confidence 44468899999999999 56999999999999999999999 99999999998765433 23445678999999999999
Q ss_pred eCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 254 SNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 254 an~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
||..|.. ..+.|.|.+++|+|++++.++.+ +++++++||++..
T Consensus 194 an~~G~~~~~~~~G~S~i~~p~G~il~~~~~~--e~~~~~~id~~~~ 238 (254)
T cd07576 194 ANRCGAEDGLTYVGLSSIAGPDGTVLARAGRG--EALLVADLDPAAL 238 (254)
T ss_pred EcccCCCCCceeeeeeEEECCCCCEeEecCCC--CeEEEEEcCHHHH
Confidence 9988754 34689999999999999998753 7899999998754
No 7
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.9e-38 Score=313.59 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=199.5
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. +. +++.|++++++++++|+++|+|||||||++++||... . +.........
T Consensus 1 ria~~q~~~~--~~---------d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~--~--~~~~~~~~~~----- 60 (258)
T cd07584 1 KVALIQMDSV--LG---------DVKANLKKAAELCKEAAAEGADLICFPELATTGYRPD--L--LGPKLWELSE----- 60 (258)
T ss_pred CEEEEEecCc--cC---------CHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCcc--c--cchhhHhhcc-----
Confidence 5899999877 44 8999999999999999999999999999999999762 1 0000000000
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCccC
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEY 174 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e~ 174 (492)
....+.++.|+++|++++++|++|+.++.. +++++||++++|+|+|+++++|+|+||++.+
T Consensus 61 ------~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~-------------~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~e 121 (258)
T cd07584 61 ------PIDGPTVRLFSELAKELGVYIVCGFVEKGG-------------VPGKVYNSAVVIDPEGESLGVYRKIHLWGLE 121 (258)
T ss_pred ------CCCCcHHHHHHHHHHHcCeEEEEeehcccC-------------CCCceEEEEEEECCCCCEEeEEEeecCCchh
Confidence 123467899999999999999999987631 2357999999999999999999999999766
Q ss_pred cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEEEe
Q psy10159 175 AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSS 254 (492)
Q Consensus 175 ~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vlaa 254 (492)
..++.+|+++.+|++++ +|||++||||++||++++.+++ +|+|+|++|++|..... ..+....++||+||+++++++
T Consensus 122 ~~~~~~G~~~~~~~~~~-~~~g~~IC~D~~fpe~~r~~~~-~gadll~~ps~~~~~~~-~~~~~~~~~rA~En~~~vv~~ 198 (258)
T cd07584 122 KQYFREGEQYPVFDTPF-GKIGVMICYDMGFPEVARILTL-KGAEVIFCPSAWREQDA-DIWDINLPARALENTVFVAAV 198 (258)
T ss_pred hhhccCCCCCeeEEcCC-ceEEEEEEcCccChHHHHHHHH-CCCcEEEECCccCCCCc-hHHHHHHHHHHHhCCcEEEEE
Confidence 55788999999999995 5999999999999999999999 99999999999986432 233446789999999999999
Q ss_pred CCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 255 NYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 255 n~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
|..|.. ..+.|.|.+++|+|++++..+.+ +++++++++|++..
T Consensus 199 n~~g~~~~~~~~G~S~ii~p~G~il~~~~~~-~~~~~~~~id~~~~ 243 (258)
T cd07584 199 NRVGNEGDLVLFGKSKILNPRGQVLAEASEE-AEEILYAEIDLDAI 243 (258)
T ss_pred CccccCCCceecceeEEECCCCceeeecCCC-CCcEEEEEeCHHHH
Confidence 987753 34679999999999999998754 58999999998743
No 8
>KOG0806|consensus
Probab=100.00 E-value=2.7e-39 Score=317.80 Aligned_cols=247 Identities=33% Similarity=0.504 Sum_probs=194.3
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
....++|.||..+. .. ++.+|++.++..+++|+++|++||||||++++||.+ + +++++|++.+|+|
T Consensus 11 ~~~~~~a~vq~~~~--l~---------~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~--~-~sf~py~E~i~~~ 76 (298)
T KOG0806|consen 11 LPNATEALVSLEEA--LL---------LMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNF--T-ESFYPYLEDIPDP 76 (298)
T ss_pred ccccceeeeecccc--hh---------hhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccc--c-ccccchhhhCCCc
Confidence 45688999999887 33 899999999999999999999999999999999998 6 9999999999987
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccccccc-CCC---CCCCCcccCCCCCeeEEEEEEEcCCCcEEeeee
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVA-CPS---DDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYR 166 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~-c~~---~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYr 166 (492)
. ..++..+.++++|+++++|++.|.++++. |+. +..+..||. ++.++||+++|||.+|..+.|||
T Consensus 77 ~----------~~~ps~~~ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g-~l~~~yrk~hlFD~d~~~~~ry~ 145 (298)
T KOG0806|consen 77 G----------CRDPSRQGLSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPG-DGLAKYRKNHLFDTDGPGVIRYR 145 (298)
T ss_pred c----------cCChhHHHhHHHHhhceEEEecCcchhhcccccccCcccccCCCc-chhheeeeeEEeccCCccceeee
Confidence 3 24688999999999999999999877665 432 334678998 99999999999999999999999
Q ss_pred cCCCCccCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhh
Q psy10159 167 KFNLFLEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFS 246 (492)
Q Consensus 167 K~~Lf~e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~e 246 (492)
|.|+|. +|..+.+++++.| |||++|||||+|+|+|+.+++ .||++||+|++|+++ ++.+.+.+.+|+..
T Consensus 146 e~~~~~-------~g~~f~~~~~~~g-kfGi~IC~Di~F~d~A~~~~~-~g~~~ivyPtaw~~~--~l~~~~~hw~~~~~ 214 (298)
T KOG0806|consen 146 ESHLLS-------PGDQFTVVDTSYG-KFGIFICFDIRFYDPAMILVK-DGADLIVYPTAWNNE--LLSAVPLHWALLMR 214 (298)
T ss_pred eeeccC-------CCcCCCcccCCCC-ceEEEEEecccccchHHHHHH-cCCcEEEecchHhhh--cccccchHHHHHHh
Confidence 999975 3334456667766 999999999999999999999 899999999999976 44445555555555
Q ss_pred CCceEEEeCCcCCCCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCC
Q psy10159 247 MDVNLLSSNYNNPAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKK 296 (492)
Q Consensus 247 n~v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~ 296 (492)
++++.++++.+.+...++|+++|....+ ...+ ..+.++++++.+++.
T Consensus 215 ~~a~~n~~~v~~~s~~~~~s~~y~~~gs--hs~~-~~p~gkvl~a~~~~~ 261 (298)
T KOG0806|consen 215 ARANDNAANVHAPSPARTGSGIYAPRGS--HSIM-VNPTGKVLAAAVEKE 261 (298)
T ss_pred CCcccceeeeeccCcCcCCceeeecCCc--ceee-cCCcceEeeeccCCC
Confidence 5555555555555555666666554443 2222 223456666666555
No 9
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=2.9e-38 Score=319.34 Aligned_cols=246 Identities=21% Similarity=0.254 Sum_probs=196.4
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCC-
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED- 92 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~- 92 (492)
+|||++|+++. +. +.+.|++++++++++|+++|+|||||||++++||... +....+..
T Consensus 1 ~kia~~Q~~~~--~~---------d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~----------~~~~~~~~~ 59 (297)
T cd07564 1 VKVAAVQAAPV--FL---------DLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYW----------IWFGAPAEG 59 (297)
T ss_pred CEEEEEecCcc--cC---------CHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCch----------hhcCCcccc
Confidence 58999999876 44 7999999999999999999999999999999999751 00000000
Q ss_pred --CCC-CCCCC-CCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecC
Q psy10159 93 --HAI-PYQEP-HKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKF 168 (492)
Q Consensus 93 --~~~-pc~~~-~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~ 168 (492)
.+. .+... ...++.+++|+++|++++++|++|+.++ +++++||++++|+++|+++++|+|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~---------------~~~~~yNs~~vi~~~G~i~~~y~K~ 124 (297)
T cd07564 60 RELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSER---------------DGGTLYNTQLLIDPDGELLGKHRKL 124 (297)
T ss_pred hHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEec---------------cCCceEEEEEEEcCCCCEeeeeecc
Confidence 000 00000 1235789999999999999999998887 4458999999999999999999999
Q ss_pred CCCccCcccCCCCC--CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CCCCChhhHHHHHHHHHh
Q psy10159 169 NLFLEYAFDTTPQP--EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WMSELPLLTAVTVHSSWA 244 (492)
Q Consensus 169 ~Lf~e~~~~~~~g~--e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~~~~p~l~~~~~~~~~A 244 (492)
||+..+...+.+|. ++.+|+|++ +|||++||||++|||.++.+++ +||++|++|++ |+......++..+.++||
T Consensus 125 ~l~~~E~~~~~~g~~~~~~v~~~~~-~kig~~ICyD~~fPe~~r~~a~-~ga~ii~~~~~~~~~~~~~~~~~~~~~~arA 202 (297)
T cd07564 125 KPTHAERLVWGQGDGSGLRVVDTPI-GRLGALICWENYMPLARYALYA-QGEQIHVAPWPDFSPYYLSREAWLAASRHYA 202 (297)
T ss_pred CCCchhhhhcccCCCCCceEEecCC-ceEEEEEEhhcCCHHHHHHHHH-CCCeEEEECCCCcccccccHHHHHHHHHHHH
Confidence 99764444556654 788999995 5999999999999999999999 99999998765 443233345566789999
Q ss_pred hhCCceEEEeCCcCCC-----------------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 245 FSMDVNLLSSNYNNPA-----------------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 245 ~en~v~vlaan~~~~~-----------------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|++++++||+.|.. ..+.|.|.+++|+|++++.++.. +++++++++|++..
T Consensus 203 ien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~-~e~~l~a~id~~~~ 272 (297)
T cd07564 203 LEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPD-EEGILYADIDLDDI 272 (297)
T ss_pred HhcCCEEEEcccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCC-CceEEEEEecHHHH
Confidence 9999999999988742 34789999999999999998644 68999999998743
No 10
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-38 Score=316.22 Aligned_cols=240 Identities=19% Similarity=0.285 Sum_probs=197.4
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+++. +. +.++|++++++++++|+++|+|||||||++++||... +.....++++.
T Consensus 1 ria~~Q~~~~--~~---------~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~-~~~~~~~~~~~-------- 60 (268)
T cd07580 1 RVACVQFDPR--VG---------DLDANLARSIELIREAADAGANLVVLPELANTGYVFE-SRDEAFALAEE-------- 60 (268)
T ss_pred CEEEEEccCc--cC---------cHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCC-CHHHHHHhhcc--------
Confidence 5899999887 44 7899999999999999999999999999999999762 11101101100
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCccC
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEY 174 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e~ 174 (492)
...++.++.++++|++++++|++|+.++ +++++||+.++|+++| ++++|+|.||+..+
T Consensus 61 ------~~~~~~~~~~~~~a~~~~~~i~~G~~~~---------------~~~~~yNs~~vi~~~g-~~~~y~K~~l~~~e 118 (268)
T cd07580 61 ------VPDGASTRAWAELAAELGLYIVAGFAER---------------DGDRLYNSAVLVGPDG-VIGTYRKAHLWNEE 118 (268)
T ss_pred ------CCCCchHHHHHHHHHHcCcEEEeecccc---------------cCCceEEEEEEECCCC-cEEEEEEecCCchh
Confidence 1234578899999999999999998877 4458999999999999 58999999999866
Q ss_pred cccCCCCCC-ceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChh-----hHHHHHHHHHhhhCC
Q psy10159 175 AFDTTPQPE-MITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPL-----LTAVTVHSSWAFSMD 248 (492)
Q Consensus 175 ~~~~~~g~e-~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~-----l~~~~~~~~~A~en~ 248 (492)
..++.+|++ +.+|+|++| |+|++||||++||++++.+++ +|||+|++|++|.....- ..+....++||+||+
T Consensus 119 ~~~f~~G~~~~~v~~~~~~-~ig~~IC~D~~fpe~~r~~~~-~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~ 196 (268)
T cd07580 119 KLLFEPGDLGLPVFDTPFG-RIGVAICYDGWFPETFRLLAL-QGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNG 196 (268)
T ss_pred cceecCCCCCCceEEcCCC-cEEEEEECcccchHHHHHHHH-cCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCC
Confidence 567889987 999999955 999999999999999999999 999999999999753211 233446789999999
Q ss_pred ceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 249 VNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 249 v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+++++||..|.. ..+.|.|.+++|+|.+++.++...+++++++++|++..
T Consensus 197 ~~vv~~n~~G~~~~~~~~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~ 248 (268)
T cd07580 197 LFIACADRVGTERGQPFIGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAA 248 (268)
T ss_pred cEEEEEeeeeeccCceEeeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHH
Confidence 999999998864 35779999999999999998644468999999998743
No 11
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.5e-38 Score=310.86 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=197.6
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+++. .. +.+.|++++.+++++|+++|+|||||||++++||... +.. .
T Consensus 1 rva~~Q~~~~--~~---------d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~----------~~~-~----- 53 (253)
T cd07583 1 KIALIQLDIV--WG---------DPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLD----------DLY-E----- 53 (253)
T ss_pred CEEEEEeecC--cC---------CHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChh----------hHH-h-----
Confidence 5899999987 34 7899999999999999999999999999999999762 000 0
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc--
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL-- 172 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~-- 172 (492)
.+. ....+.++.|+++|++++++|++|+.+.. +++++||++++|+|+|+++++|+|+||+.
T Consensus 54 -~~~--~~~~~~~~~l~~~a~~~~~~iv~G~~~~~--------------~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~ 116 (253)
T cd07583 54 -LAD--EDGGETVSFLSELAKKHGVNIVAGSVAEK--------------EGGKLYNTAYVIDPDGELIATYRKIHLFGLM 116 (253)
T ss_pred -hhc--ccCchHHHHHHHHHHHcCcEEEeceEEec--------------CCCcEEEEEEEECCCCcEEEEEeeeeCCCCc
Confidence 000 23467899999999999999999975442 44689999999999999999999999975
Q ss_pred cCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEE
Q psy10159 173 EYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLL 252 (492)
Q Consensus 173 e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vl 252 (492)
++..++.+|+++.+|+|++ +|||++||+|++|||+++.+++ +|||+|++|++|+... ...+..+.++||++|+++++
T Consensus 117 ~e~~~~~~G~~~~v~~~~~-~rig~~IC~D~~~pe~~r~~~~-~ga~ll~~ps~~~~~~-~~~~~~~~~~rA~en~~~vv 193 (253)
T cd07583 117 GEDKYLTAGDELEVFELDG-GKVGLFICYDLRFPELFRKLAL-EGAEILFVPAEWPAAR-IEHWRTLLRARAIENQAFVV 193 (253)
T ss_pred CchhhccCCCCceEEEeCC-eEEEEEEEeccccHHHHHHHHH-cCCcEEEECCCCCCCc-hHHHHHHHHHHHHHhCCEEE
Confidence 4555789999999999995 5999999999999999999999 9999999999997642 22334467899999999999
Q ss_pred EeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 253 SSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 253 aan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|..|.. ..+.|.|.+++|+|++++.++. +++++++++|++..
T Consensus 194 ~~n~~G~~~~~~~~G~S~ii~p~G~il~~~~~--~~~~~~~~i~l~~~ 239 (253)
T cd07583 194 ACNRVGTDGGNEFGGHSMVIDPWGEVLAEAGE--EEEILTAEIDLEEV 239 (253)
T ss_pred EEcCcccCCCceecceeEEECCCchhheecCC--CceEEEEEecHHHH
Confidence 99998764 3357999999999999999874 67999999998743
No 12
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=4.4e-38 Score=311.60 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=187.2
Q ss_pred ceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCC
Q psy10159 13 FYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92 (492)
Q Consensus 13 ~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~ 92 (492)
.++||++|+.+. +. +.+.|++++.+++++| +|||||||||++++||... + ....
T Consensus 3 ~mkia~~Q~~~~--~~---------d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~----------~-~~~~-- 56 (256)
T PRK10438 3 GLKITLLQQPLV--WM---------DGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAME----------A-AASS-- 56 (256)
T ss_pred CCEEEEEEecCc--cC---------CHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCccc----------c-hhhc--
Confidence 499999999887 44 7889999999999975 6999999999999999752 0 0000
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc
Q psy10159 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL 172 (492)
Q Consensus 93 ~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~ 172 (492)
...++..+.|+++|++++++|+.++.++ +++.+|||+++|+++|. +++|||.|||+
T Consensus 57 --------~~~~~~~~~l~~~A~~~~~~i~g~~~~~---------------~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~ 112 (256)
T PRK10438 57 --------LPQDDVVAWMTAKAQQTNALIAGSVALQ---------------TESGAVNRFLLVEPGGT-VHFYDKRHLFR 112 (256)
T ss_pred --------cccchHHHHHHHHHHHcCeEEEEEEEEe---------------cCCCeEEEEEEEcCCCC-EEEEeeeecCC
Confidence 1123678899999999998654344344 33468899999999997 67999999985
Q ss_pred --cCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCce
Q psy10159 173 --EYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVN 250 (492)
Q Consensus 173 --e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~ 250 (492)
++..++.+|+++.+|+++ |+|+|++||||++|||.+|.+ +|+|+|++|++|+.... ..+..+.++||+||+++
T Consensus 113 ~~~E~~~f~~G~~~~v~~~~-~~~iG~~ICyD~~fPe~~r~l---~gad~i~~~s~~~~~~~-~~~~~~~~aRA~En~~~ 187 (256)
T PRK10438 113 MADEHLHYKAGNARVIVEWR-GWRILPLVCYDLRFPVWSRNR---NDYDLALYVANWPAPRS-LHWQTLLTARAIENQAY 187 (256)
T ss_pred CCCccceecCCCCceEEEEC-CEEEEEEEEeecCCHHHHHhh---cCCCEEEEecCCCCCch-HHHHHHHHHHHHhcCcE
Confidence 344578999999999999 679999999999999999985 78999999999986432 23455678999999999
Q ss_pred EEEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 251 LLSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 251 vlaan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
+++||..|.. ..+.|.|.++||+|++++..+.. +++++++++|++.
T Consensus 188 vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~~~~~-~e~~i~~~idl~~ 236 (256)
T PRK10438 188 VAGCNRVGSDGNGHHYRGDSRIINPQGEIIATAEPH-QATRIDAELSLEA 236 (256)
T ss_pred EEEecccccCCCCCEEcCceEEECCCCcEEEEcCCC-CcEEEEEEECHHH
Confidence 9999998854 44689999999999999998643 6899999999874
No 13
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=4e-38 Score=329.58 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=201.0
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
...++||+||+++. +. . ...-..+.++|++++.+++++|+++|||||||||++++||.+. +++. .|.+ ..+
T Consensus 84 ~~~~rValiQ~~i~--~~-~-~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~-~~~~--~~~~-~ae- 154 (405)
T PLN00202 84 PRVVRVGLIQNSIA--LP-T-TAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFC-TREK--RWCE-FAE- 154 (405)
T ss_pred CCeEEEEEEecccc--cC-C-CCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccc-cccc--hHHH-Hhh-
Confidence 56799999999975 11 0 0000127899999999999999999999999999999998652 1110 0011 000
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL 170 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L 170 (492)
...++.++.|+++|++++++|++|+.++.. . +++.+|||+++|+++|+++++|||.||
T Consensus 155 ----------~~~g~~~~~l~~lA~~~~i~Iv~G~~e~~~-----------~-~~~~~yNSa~vI~~~G~iig~YrKiHL 212 (405)
T PLN00202 155 ----------PVDGESTKFLQELARKYNMVIVSPILERDV-----------N-HGETLWNTAVVIGNNGNIIGKHRKNHI 212 (405)
T ss_pred ----------hCCCHHHHHHHHHHHHCCeEEEEEeeeeec-----------C-CCCcEEEEEEEECCCCcEEEEEecccC
Confidence 123578999999999999999999887631 0 235799999999999999999999999
Q ss_pred Cc----cCcccCCCCCC-ceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhh
Q psy10159 171 FL----EYAFDTTPQPE-MITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAF 245 (492)
Q Consensus 171 f~----e~~~~~~~g~e-~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~ 245 (492)
|. .+..++.+|.. ..+|+|++| |||++||||++|||.+|.++. +|||+|++|++|........|....++||+
T Consensus 213 ~~~g~~~E~~~f~~G~~g~~vf~t~~g-kiGv~ICYD~~FPE~~r~la~-~GAdiIl~Psa~~~~~~~~~w~~~~raRAi 290 (405)
T PLN00202 213 PRVGDFNESTYYMEGNTGHPVFETAFG-KIAVNICYGRHHPLNWLAFGL-NGAEIVFNPSATVGDLSEPMWPIEARNAAI 290 (405)
T ss_pred CCCCCccccceeecCCCCceEEEeCCC-eEEEEEccccccHHHHHHHHH-CCCcEEEECCCCCCccCHHHHHHHHHHHHH
Confidence 74 13335778875 689999976 999999999999999999999 999999999999754322345567899999
Q ss_pred hCCceEEEeCCcCCC------------------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 246 SMDVNLLSSNYNNPA------------------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 246 en~v~vlaan~~~~~------------------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+|+++++++|+.|.. ..+.|.|++++|+|.+++.+... ++++++++||++..
T Consensus 291 EN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~-~E~llvadIDl~~v 360 (405)
T PLN00202 291 ANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRY-KDGLLISDMDLNLC 360 (405)
T ss_pred hcCCEEEEeccccccccccccccccccccccccccccceeEEEcCCCCEeccCCCC-CCcEEEEEeCHHHH
Confidence 999999999999863 24689999999999999987543 57899999998754
No 14
>PLN02504 nitrilase
Probab=100.00 E-value=7.4e-38 Score=322.39 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=196.6
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
.++++||++|+++. +. +.++|+++++++|++|+++|||||||||++++||..... +......-+..
T Consensus 22 ~~~~kiAlvQ~~~~--~~---------d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~---~~~~~~~~~~~ 87 (346)
T PLN02504 22 SSTVRATVVQASTV--FY---------DTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGST---FGLAIGDRSPK 87 (346)
T ss_pred CCceEEEEEEcCcc--cC---------CHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchh---hccccccccch
Confidence 45799999999987 44 788999999999999999999999999999999964100 00000000000
Q ss_pred -C-CCCCCCCC-CCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeec
Q psy10159 91 -E-DHAIPYQE-PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRK 167 (492)
Q Consensus 91 -~-~~~~pc~~-~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK 167 (492)
. .....+.. ....++.++.|+++|++++++|++|+.++ +++++||++++|+++|+++++|||
T Consensus 88 ~~~~~~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~---------------~~~~~yNsa~~i~~~G~i~~~yrK 152 (346)
T PLN02504 88 GREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIER---------------DGYTLYCTVLFFDPQGQYLGKHRK 152 (346)
T ss_pred hHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeec---------------CCCceEEEEEEECCCCCEEeEEee
Confidence 0 00000000 01245789999999999999999998887 456799999999999999999999
Q ss_pred CCCCccCcccCCCC--CCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhh
Q psy10159 168 FNLFLEYAFDTTPQ--PEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAF 245 (492)
Q Consensus 168 ~~Lf~e~~~~~~~g--~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~ 245 (492)
+|++..+...+.+| .++.+|+|++| |||++||||++|||.+|.++. +||++|++|++|.. ..+....++||+
T Consensus 153 ~~p~~~E~~~f~~G~g~~~~vf~~~~g-riG~lICyD~~fPe~~r~la~-~Gadii~~p~~~~~----~~w~~~~rarA~ 226 (346)
T PLN02504 153 LMPTALERLIWGFGDGSTIPVYDTPIG-KIGAVICWENRMPLLRTAMYA-KGIEIYCAPTADSR----ETWQASMRHIAL 226 (346)
T ss_pred ccCCcccceeeecCCCCCCceEEcCCc-eEEEEEeccchhHHHHHHHHH-CCCeEEEECCCCCc----hhHHHHHHHHHH
Confidence 99976444345555 47899999954 999999999999999999999 99999999999853 234557789999
Q ss_pred hCCceEEEeCCcC---------------C-------CCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 246 SMDVNLLSSNYNN---------------P-------AQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 246 en~v~vlaan~~~---------------~-------~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
||+++|+++|..| . ...+.|.|.+++|+|.+++.... .++++++++||+...
T Consensus 227 En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~-~~e~il~adiDl~~i 300 (346)
T PLN02504 227 EGGCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNY-EGEGLITADLDLGEI 300 (346)
T ss_pred ccCcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCC-CCCcEEEEEEcHHHH
Confidence 9999999999984 1 13467999999999999988643 357899999998753
No 15
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.3e-38 Score=310.33 Aligned_cols=237 Identities=19% Similarity=0.269 Sum_probs=194.3
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
||||++|+.+. +. +.+.|++++.+++++|+++|+|||||||++++||... +.....+|++
T Consensus 1 ~ria~~Q~~~~--~~---------d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~-~~~~~~~~~~-------- 60 (258)
T cd07578 1 YKAAAIQFEPE--MG---------EKERNIERLLALCEEAARAGARLIVTPEMATTGYCWY-DRAEIAPFVE-------- 60 (258)
T ss_pred CeEEEEEecCc--cc---------cHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcC-CHHHhhhhcc--------
Confidence 68999999987 44 7899999999999999999999999999999999752 1111111111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCcc
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLE 173 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e 173 (492)
...++.++.|+++|++++++|++|+.++.+ +++++||++++|+++| ++++|+|.|||..
T Consensus 61 -------~~~~~~~~~l~~~a~~~~i~ii~G~~~~~~-------------~~~~~yNs~~vi~~~g-~~~~y~K~h~~~~ 119 (258)
T cd07578 61 -------PIPGPTTARFAELAREHDCYIVVGLPEVDS-------------RSGIYYNSAVLIGPSG-VIGRHRKTHPYIS 119 (258)
T ss_pred -------cCCCHHHHHHHHHHHHcCcEEEEecceecC-------------CCCCeeEEEEEECCCC-cEEeEeeecCCcc
Confidence 123467899999999999999999987631 3457999999999999 7999999999865
Q ss_pred CcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEE
Q psy10159 174 YAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLL 252 (492)
Q Consensus 174 ~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vl 252 (492)
+..++.+|+ .+.+|+++ |+|||++||||++|||+++.+++ +|+++|++|++|+...... +..++||+||+++++
T Consensus 120 e~~~~~~g~~~~~v~~~~-~~rig~~IC~D~~fpe~~r~~~~-~ga~ll~~ps~~~~~~~~~---~~~~~rA~en~~~vv 194 (258)
T cd07578 120 EPKWAADGDLGHQVFDTE-IGRIALLICMDIHFFETARLLAL-GGADVICHISNWLAERTPA---PYWINRAFENGCYLI 194 (258)
T ss_pred cccccCCCCCCceEEECC-CccEEEEEeeCCCchHHHHHHHH-cCCCEEEEcCCCCCCCCcc---hHHHHhhhcCCeEEE
Confidence 544678887 57899999 56999999999999999999999 9999999999998632111 223589999999999
Q ss_pred EeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 253 SSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 253 aan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+||..|.. ..+.|.|.+++|+|++++..+. ++++++++||++..
T Consensus 195 ~an~~G~~~~~~~~G~S~ii~p~G~il~~~~~--~e~~~~a~id~~~~ 240 (258)
T cd07578 195 ESNRWGLERGVQFSGGSCIIEPDGTIQASIDS--GDGVALGEIDLDRA 240 (258)
T ss_pred EecceeccCCcceeeEEEEECCCCcEeeccCC--CCceEEEEecchHh
Confidence 99998754 3467999999999999998753 56899999998854
No 16
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=1e-37 Score=320.56 Aligned_cols=258 Identities=18% Similarity=0.194 Sum_probs=206.0
Q ss_pred cccccCcCCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHh--cCCCcEEEcCCCCcCCCCCCCcccC
Q psy10159 2 VQHARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNAS--NYDVDIIVFPECGLAGTPVPKRRAD 79 (492)
Q Consensus 2 ~~~~~s~~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~--~~gadIIVfPE~~l~g~~~~~~r~~ 79 (492)
|+|...+++.+.++||++|++.. .. ...+++.+|++++.++|+.|+ ..++|||||||++++||.+. ...
T Consensus 1 ~~~~~~~~~~~~l~va~vQ~~~p--~~-----~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~--~~~ 71 (345)
T PRK13286 1 MRHGDISSSNDTVGVAVVNYKMP--RL-----HTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYD--RQE 71 (345)
T ss_pred CCCCCcCCCCCceEEEEEEcCCC--cc-----CCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcC--hHH
Confidence 45566677788999999999754 11 123489999999999999886 46899999999999998762 111
Q ss_pred cccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccc-ccccCCCCCCCCcccCCCCCeeEEEEEEEcCC
Q psy10159 80 VKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLF-EIVACPSDDQSSICRGQDRNYHYNTNLVFDRQ 158 (492)
Q Consensus 80 ~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~-ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~ 158 (492)
+...+. ...++.++.|+++|+++++++++++. ++.. + - .+..+|||+++|+++
T Consensus 72 ~~~~a~---------------~i~g~~~~~l~~~A~~~~i~~v~~i~ge~~~-~-------~---~~~~~yNta~vi~~~ 125 (345)
T PRK13286 72 MYETAS---------------TIPGEETAIFAEACRKAKVWGVFSLTGERHE-E-------H---PRKAPYNTLILINDK 125 (345)
T ss_pred HHHhcc---------------cCCCHHHHHHHHHHHHcCEEEEEeccccccc-c-------C---CCCceeEEEEEECCC
Confidence 111111 23357789999999999999999876 4411 0 0 134689999999999
Q ss_pred CcEEeeeecCCCCccCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHH
Q psy10159 159 GQIIAKYRKFNLFLEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVT 238 (492)
Q Consensus 159 G~ii~rYrK~~Lf~e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~ 238 (492)
|+++++|||+|+|.+.. .+.+|.+..+|+++.|+|||++||||++|||++|.+++ +||++|+.|++|+...+ .++..
T Consensus 126 G~i~~~YrK~~p~~~~e-~~~pG~~~~v~~~~~G~kiG~lIC~D~~fPE~~R~la~-~GAelii~psa~~~~~~-~~~~~ 202 (345)
T PRK13286 126 GEIVQKYRKIMPWCPIE-GWYPGDCTYVSEGPKGLKISLIICDDGNYPEIWRDCAM-KGAELIVRCQGYMYPAK-EQQVL 202 (345)
T ss_pred CeEEEEEEeecCCchhh-ceecCCCCEEEeCCCCcEEEEEEEecccChHHHHHHHH-cCCeEEEEccccCCCch-HHHHH
Confidence 99999999999987544 35789888999998788999999999999999999999 99999999999976433 24455
Q ss_pred HHHHHhhhCCceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 239 VHSSWAFSMDVNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 239 ~~~~~A~en~v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+.++||++|+++|++||..|.. ..+.|.|.+++|+|+++++.... ++++++++||++..
T Consensus 203 ~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Ivdp~G~vla~~~~~-~e~ii~adld~~~i 263 (345)
T PRK13286 203 VAKAMAWANNCYVAVANAAGFDGVYSYFGHSAIIGFDGRTLGECGEE-EMGIQYAQLSVSQI 263 (345)
T ss_pred HHHHHHHHCCCEEEEEecccccCCceeeeeEEEECCCCcEEEecCCC-CCeEEEEEEeHHHH
Confidence 7889999999999999998753 34679999999999999997643 57999999998743
No 17
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.2e-37 Score=312.96 Aligned_cols=251 Identities=17% Similarity=0.160 Sum_probs=198.5
Q ss_pred CceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCC
Q psy10159 12 EFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPE 91 (492)
Q Consensus 12 ~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~ 91 (492)
.++|||++|+++.... ......+.++|++++.+++++|+++|||||||||++++||.....+. .+.+
T Consensus 2 ~~~rva~vQ~~~~~~~----~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~---~~~~------ 68 (287)
T cd07568 2 RIVRVGLIQASNVIPT----DAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDT---KWYE------ 68 (287)
T ss_pred ceEEEEEEEeeccccc----ccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCcccccc---chhh------
Confidence 4699999999976101 11112388999999999999999999999999999999986420000 0000
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC
Q psy10159 92 DHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF 171 (492)
Q Consensus 92 ~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf 171 (492)
.+.. ...++.++.|+.+|++++++|++|+.++. .++++||++++|+|+|+++++|+|.||+
T Consensus 69 ----~~~~-~~~~~~~~~l~~~a~~~~i~ii~g~~~~~--------------~~~~~yNs~~~i~~~G~i~~~y~K~hL~ 129 (287)
T cd07568 69 ----FAEE-IPNGPTTKRFAALAKEYNMVLILPIYEKE--------------QGGTLYNTAAVIDADGTYLGKYRKNHIP 129 (287)
T ss_pred ----hccc-CCCChHHHHHHHHHHHCCEEEEEEeEEEc--------------CCCcEEEEEEEECCCCcEeeEEeeeecC
Confidence 1111 12457899999999999999999988772 3357999999999999999999999995
Q ss_pred c--c--CcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhh
Q psy10159 172 L--E--YAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFS 246 (492)
Q Consensus 172 ~--e--~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~e 246 (492)
. + +...+.+|. ...+|+++ |+|||++||||++||++++.+++ +|+|+|++|++|........+....++||++
T Consensus 130 ~~~~~~e~~~f~~G~~~~~~f~~~-~~~iG~~ICyD~~fpe~~r~la~-~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~e 207 (287)
T cd07568 130 HVGGFWEKFYFRPGNLGYPVFDTA-FGKIGVYICYDRHFPEGWRALGL-NGAEIVFNPSATVAGLSEYLWKLEQPAAAVA 207 (287)
T ss_pred CCCccceeeeecCCCCCCceEEcC-CceEEEEEEecccCchHHHHHHH-CCCeEEEECCcCCCCCchhhhHHHHHHHHHH
Confidence 3 2 234577887 58999999 56999999999999999999999 9999999999987533222333456899999
Q ss_pred CCceEEEeCCcCCCC-----cCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 247 MDVNLLSSNYNNPAQ-----YGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 247 n~v~vlaan~~~~~~-----~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
|+++++++|..|... .+.|.|++++|+|+++++++.+ +++++++++|++.
T Consensus 208 n~~~vv~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~-~~~~l~a~id~~~ 262 (287)
T cd07568 208 NGYFVGAINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRD-KDELLVAELDLDL 262 (287)
T ss_pred CCcEEEEeccccccCCCccceEeceeEEECCCceEEEecCCC-CCeEEEEEecHHH
Confidence 999999999887652 3569999999999999998754 6899999999874
No 18
>PLN02798 nitrilase
Probab=100.00 E-value=8.7e-38 Score=314.22 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=196.9
Q ss_pred CCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCC-CcCCCCCCCcccCcccccccCC
Q psy10159 10 SREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPEC-GLAGTPVPKRRADVKPYLITIP 88 (492)
Q Consensus 10 ~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~-~l~g~~~~~~r~~~~~~~~~vp 88 (492)
...++|||++|+.+. . +.+.|++++++++++|+++|+|||||||+ .+.|+... ....+
T Consensus 7 ~~~~~ria~~Q~~~~---~---------d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~----~~~~~----- 65 (286)
T PLN02798 7 AGSSVRVAVAQMTST---N---------DLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDG----ESLAI----- 65 (286)
T ss_pred ccCccEEEEEEccCC---C---------CHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCch----hhhhh-----
Confidence 346899999998754 3 78999999999999999999999999998 45566431 00000
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcc-cccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeec
Q psy10159 89 TPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNL-FEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRK 167 (492)
Q Consensus 89 ~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~-~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK 167 (492)
+ + ...++.++.|+++|++++++|++|. .++.+ +++++||+.++|+|+|+++++|+|
T Consensus 66 --------~-~-~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~-------------~~~~~yNs~~vi~~~G~i~~~y~K 122 (286)
T PLN02798 66 --------A-E-PLDGPIMQRYRSLARESGLWLSLGGFQEKGP-------------DDSHLYNTHVLIDDSGEIRSSYRK 122 (286)
T ss_pred --------c-c-cCCCHHHHHHHHHHHHcCeEEEEeeeEcccC-------------CCCceEEEEEEECCCCCEEEEEEE
Confidence 0 0 1235689999999999999999984 44421 456899999999999999999999
Q ss_pred CCCCcc---------CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHH-HhCCCcEEEEeCCCCCCChhhHHH
Q psy10159 168 FNLFLE---------YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLV-KQKNITDFVYTAAWMSELPLLTAV 237 (492)
Q Consensus 168 ~~Lf~e---------~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~-~~~Gad~iv~ptaw~~~~p~l~~~ 237 (492)
+|||++ +...+.+|+++.+|++++| |||++||||++||++++.++ + +|+|+|++|++|........+.
T Consensus 123 ~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~-k~g~~IC~D~~fpe~~r~~a~~-~Gadlil~ps~~~~~~~~~~~~ 200 (286)
T PLN02798 123 IHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVG-RLGLTVCYDLRFPELYQQLRFE-HGAQVLLVPSAFTKPTGEAHWE 200 (286)
T ss_pred EEeccccCCCCCcccccccccCCCeeeEEecCCc-eEEEEEEEcccChHHHHHHHHh-CCCcEEEECCcCCCCCcHHHHH
Confidence 999753 2335789999999999965 99999999999999999998 8 9999999999997654333445
Q ss_pred HHHHHHhhhCCceEEEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 238 TVHSSWAFSMDVNLLSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 238 ~~~~~~A~en~v~vlaan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
...++||+||+++++++|..|.. ..+.|.|++++|+|++++.++...++++++++||++..
T Consensus 201 ~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~ 264 (286)
T PLN02798 201 VLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLL 264 (286)
T ss_pred HHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHH
Confidence 56799999999999999988753 34668999999999999988642357899999998753
No 19
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.3e-38 Score=309.91 Aligned_cols=232 Identities=22% Similarity=0.328 Sum_probs=194.1
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. +. +++.|++++.++|++|+ ||||||||++++||.+. .++.+..+.+.
T Consensus 1 kia~~Q~~~~--~~---------d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~-~~~~~~~~~~~-------- 57 (259)
T cd07577 1 KVGYVQFNPK--FG---------EVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFT-SKEEVASLAES-------- 57 (259)
T ss_pred CEEEEEccCc--cC---------CHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcC-CHHHHHHhhcc--------
Confidence 5899999977 44 89999999999999884 99999999999999762 11111111110
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCccC
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEY 174 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e~ 174 (492)
...++.++.|+++|++++++|++|+.++ +++++||++++|+++| ++++|+|+|||.++
T Consensus 58 ------~~~~~~~~~l~~~a~~~~i~ii~G~~~~---------------~~~~~yNs~~vi~~~G-i~~~y~K~~l~~~e 115 (259)
T cd07577 58 ------IPDGPTTRFLQELARETGAYIVAGLPER---------------DGDKFYNSAVVVGPEG-YIGIYRKTHLFYEE 115 (259)
T ss_pred ------cCCChHHHHHHHHHHHhCcEEEecceec---------------cCCceEEEEEEECCCc-cEeeEeeccCChhh
Confidence 1135789999999999999999999887 4567999999999999 99999999999877
Q ss_pred cccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEEE
Q psy10159 175 AFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLS 253 (492)
Q Consensus 175 ~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vla 253 (492)
..++.+|+ .+.+|+++ |+|+|++||||++|||+++.+++ +|||+|++|++|.. |+ +....++||+||++++++
T Consensus 116 ~~~~~~G~~~~~~~~~~-~~~ig~~IC~D~~fpe~~r~~~~-~Gadli~~ps~~~~--~~--~~~~~~~rA~en~~~vv~ 189 (259)
T cd07577 116 KLFFEPGDTGFRVFDIG-DIRIGVMICFDWYFPEAARTLAL-KGADIIAHPANLVL--PY--CPKAMPIRALENRVFTIT 189 (259)
T ss_pred hccccCCCCCCceEEeC-CcEEEEEEEcCcccchHHHHHHH-cCCCEEEECCccCC--ch--hhhhhhHhhhhcCceEEE
Confidence 66788998 79999999 56999999999999999999999 99999999999974 32 335678999999999999
Q ss_pred eCCcCCC------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 254 SNYNNPA------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 254 an~~~~~------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
||..|.. ..+.|.|.+++|+|++++.++.. +++++++++|++..
T Consensus 190 ~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~-~e~~~~~~id~~~~ 239 (259)
T cd07577 190 ANRIGTEERGGETLRFIGKSQITSPKGEVLARAPED-GEEVLVAEIDPRLA 239 (259)
T ss_pred EecCcccCCCCCCceEeeeeEEECCCCCEEeecCCC-CCcEEEEEEchHHh
Confidence 9998754 34679999999999999998754 67899999998743
No 20
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.6e-37 Score=304.84 Aligned_cols=234 Identities=25% Similarity=0.349 Sum_probs=195.8
Q ss_pred EEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCC
Q psy10159 16 AAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAI 95 (492)
Q Consensus 16 aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~ 95 (492)
||++|+++. . +.++|++++++++++|+++|+|||||||++++||... .. . +.
T Consensus 1 ia~~Q~~~~---~---------d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~--~~-------~-------~~ 52 (255)
T cd07581 1 VALAQFASS---G---------DKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDG--LD-------D-------YA 52 (255)
T ss_pred CEEEEeeCC---C---------CHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcc--hh-------h-------HH
Confidence 589999876 3 7999999999999999999999999999999999762 10 0 00
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc---
Q psy10159 96 PYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL--- 172 (492)
Q Consensus 96 pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~--- 172 (492)
.+.. ....+.++.|+++|++++++|++|++++. .++++||++++|+++|+++++|+|.||+.
T Consensus 53 ~~~~-~~~~~~~~~l~~~a~~~~i~iv~G~~~~~--------------~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~ 117 (255)
T cd07581 53 RVAE-PLDGPFVSALARLARELGITVVAGMFEPA--------------GDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFG 117 (255)
T ss_pred hhhc-cCCCHHHHHHHHHHHHcCeEEEEEeeeeC--------------CCCcEEEeEEEECCCCcEEEEEeeeccCCCCC
Confidence 1111 22357799999999999999999998873 23479999999999999999999999974
Q ss_pred -cCcccCCCCCC--ceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCC-hhhHHHHHHHHHhhhCC
Q psy10159 173 -EYAFDTTPQPE--MITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSEL-PLLTAVTVHSSWAFSMD 248 (492)
Q Consensus 173 -e~~~~~~~g~e--~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~-p~l~~~~~~~~~A~en~ 248 (492)
.+..++.+|.+ ..+|+++ |+|+|++||||++||++++.+++ +|+++|++|++|+... ...++..+.++||+||+
T Consensus 118 ~~e~~~~~~G~~~~~~~~~~~-~~kig~~IC~D~~~pe~~~~~~~-~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~ 195 (255)
T cd07581 118 FRESDTVAPGDELPPVVFVVG-GVKVGLATCYDLRFPELARALAL-AGADVIVVPAAWVAGPGKEEHWETLLRARALENT 195 (255)
T ss_pred cCcccccCCCCCCCceEEecC-CceEEEEEEecccCHHHHHHHHH-CCCcEEEECCcccCCCCchHHHHHHHHHHHHHhC
Confidence 23346788887 7888887 66999999999999999999999 9999999999997643 34456677889999999
Q ss_pred ceEEEeCCcCCCCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 249 VNLLSSNYNNPAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 249 v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+++++||..|+ .+.|.|.+++|+|++++.++. +++++++++|++..
T Consensus 196 ~~vv~~n~~g~--~~~G~S~i~~p~G~i~~~~~~--~~~~l~~~id~~~~ 241 (255)
T cd07581 196 VYVAAAGQAGP--RGIGRSMVVDPLGVVLADLGE--REGLLVADIDPERV 241 (255)
T ss_pred CEEEEEcCcCC--CcccceEEECCCcceeeecCC--CCcEEEEEeCHHHH
Confidence 99999998886 478999999999999999864 47899999998754
No 21
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=3.3e-37 Score=311.35 Aligned_cols=242 Identities=21% Similarity=0.213 Sum_probs=196.8
Q ss_pred ceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCC
Q psy10159 13 FYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92 (492)
Q Consensus 13 ~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~ 92 (492)
.++||++|+++. . +.+.|++++.+++++|+++|||||||||++++||.....+. +..
T Consensus 6 ~~~va~~Q~~~~---~---------d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~----------~~~- 62 (296)
T PLN02747 6 KVVVAALQFACS---D---------DRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQRE----------DFF- 62 (296)
T ss_pred ceEEEEEEecCC---C---------CHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCcccccc----------chh-
Confidence 599999999865 3 79999999999999999999999999999999986510000 000
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc
Q psy10159 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL 172 (492)
Q Consensus 93 ~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~ 172 (492)
..+.. ....+.+++|+++|++++++|++|+.++ +++++||++++|+|+|+++++|+|.||+.
T Consensus 63 --~~~~~-~~~~~~~~~l~~~a~~~~i~i~~g~~~~---------------~~~~~yNs~~~i~~~G~i~~~y~K~hL~~ 124 (296)
T PLN02747 63 --QRAKP-YEGHPTIARMQKLAKELGVVIPVSFFEE---------------ANNAHYNSIAIIDADGTDLGLYRKSHIPD 124 (296)
T ss_pred --hhccc-CCCChHHHHHHHHHHHcCeEEEeeeeec---------------CCCceEEEEEEECCCCCCcceEEEEecCC
Confidence 00110 1224789999999999999999998876 45689999999999999999999999964
Q ss_pred c----CcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCC------hhhHHHHHHH
Q psy10159 173 E----YAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSEL------PLLTAVTVHS 241 (492)
Q Consensus 173 e----~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~------p~l~~~~~~~ 241 (492)
. +..++.+|. .+.+|++++| |||++||||++||++++.+++ +|+++|++|++|.... ....+....+
T Consensus 125 ~~~~~e~~~~~~G~~~~~~~~~~~~-rig~~IC~D~~fpe~~r~~~~-~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~ 202 (296)
T PLN02747 125 GPGYQEKFYFNPGDTGFKVFDTKFA-KIGVAICWDQWFPEAARAMVL-QGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQ 202 (296)
T ss_pred CCCccceeeecCCCCCCeeEEcCCc-cEEEEEEccccchHHHHHHHH-CCCCEEEEeCccCCCCcccccchHHHHHHHHH
Confidence 2 334577886 5899999954 999999999999999999999 9999999999996421 1124455678
Q ss_pred HHhhhCCceEEEeCCcCCC----------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 242 SWAFSMDVNLLSSNYNNPA----------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 242 ~~A~en~v~vlaan~~~~~----------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+||++|+++|+++|..|+. ..+.|.|.+++|+|+++++.+.. ++++++++||+...
T Consensus 203 ~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~-~e~~~~adid~~~~ 268 (296)
T PLN02747 203 GHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDK-AEAVLVAEFDLDQI 268 (296)
T ss_pred HHHHHcCCeEEEEecccccccccccCCcCceEeeeeEEECCCCCEeecCCCC-CCcEEEEEEcHHHH
Confidence 9999999999999998752 34568999999999999998754 57999999998753
No 22
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.4e-37 Score=308.63 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=194.3
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhc-----CCCcEEEcCCCCcCCCCCCCcccCcccccccCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASN-----YDVDIIVFPECGLAGTPVPKRRADVKPYLITIP 88 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~-----~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp 88 (492)
|+++.+|.... .. +...+++.|++++.++|++|++ +|+|||||||++++||... ....... ..
T Consensus 1 ~~~~~~~~~~~--~~-----~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~-~~~~~~~----~~ 68 (294)
T cd07582 1 YTALALQPTCE--AA-----EDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMG-EPREVWQ----FD 68 (294)
T ss_pred CeeEEEecccc--cc-----cChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcc-cchhhhh----hh
Confidence 67899999876 23 2234999999999999999987 4799999999999999762 1100000 00
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecC
Q psy10159 89 TPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKF 168 (492)
Q Consensus 89 ~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~ 168 (492)
..|. ...++.++.|+++|++++++|++|+.++.. . .++++||++++|+|+|+++++|||+
T Consensus 69 ------~~a~--~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~-----------~-~~~~~yNsa~~i~~~G~i~~~yrK~ 128 (294)
T cd07582 69 ------KAAI--DIPGPETEALGEKAKELNVYIAANAYERDP-----------D-FPGLYFNTAFIIDPSGEIILRYRKM 128 (294)
T ss_pred ------hccc--cCCCHHHHHHHHHHHHcCEEEEEeeeeecC-----------C-CCCcEEEEEEEECCCCcEEEEEeee
Confidence 0111 234688999999999999999999887731 0 2357999999999999999999999
Q ss_pred CCCccCc------------ccCCCC-C-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhh
Q psy10159 169 NLFLEYA------------FDTTPQ-P-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLL 234 (492)
Q Consensus 169 ~Lf~e~~------------~~~~~g-~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l 234 (492)
|||..++ ..+.+| . .+.+|+|++| |||++||||++|||+++.+++ +|+|+|++|++|.......
T Consensus 129 hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v~~~~~~-~iG~~ICyD~~fpe~~r~la~-~Gadlil~psa~~~~~~~~ 206 (294)
T cd07582 129 NSLAAEGSPSPHDVWDEYIEVYGYGLDALFPVADTEIG-NLGCLACEEGLYPEVARGLAM-NGAEVLLRSSSEVPSVELD 206 (294)
T ss_pred ccCccccccCccchhhhhcccCCCcccccceeecCCCc-eEEEEEeecccChHHHHHHHH-CCCcEEEEcCCCCCCcchh
Confidence 9975321 123343 2 4688999965 999999999999999999999 9999999999986543222
Q ss_pred HHHHHHHHHhhhCCceEEEeCCcCCC------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 235 TAVTVHSSWAFSMDVNLLSSNYNNPA------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 235 ~~~~~~~~~A~en~v~vlaan~~~~~------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
.+..+.++||+||+++++++|..|.. ..+.|.|++++|+|++++..+...++++++++||++.
T Consensus 207 ~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~ 275 (294)
T cd07582 207 PWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEA 275 (294)
T ss_pred hHHHHHHHHHHhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHH
Confidence 34456789999999999999998753 2356999999999999999865325789999999874
No 23
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.2e-37 Score=302.83 Aligned_cols=236 Identities=19% Similarity=0.210 Sum_probs=198.2
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. .. +.+.|++++++++++|+++|+|||||||++++||... +....+
T Consensus 1 ~ia~~Q~~~~--~~---------~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~----------~~~~~~---- 55 (261)
T cd07585 1 RIALVQFEAR--VG---------DKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHV----------RALSRE---- 55 (261)
T ss_pred CEEEEEeecC--CC---------CHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCC----------cccchh----
Confidence 5899999986 34 7999999999999999999999999999999999762 111000
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCccC
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEY 174 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e~ 174 (492)
.. ....+.++.|+.+|++++++|++|+.++ +++++||++++|+++|. +++|+|.||+..+
T Consensus 56 --~~--~~~~~~~~~l~~~a~~~~~~i~~G~~~~---------------~~~~~yNs~~vi~~~g~-i~~y~K~~l~~~E 115 (261)
T cd07585 56 --AE--VPDGPSTQALSDLARRYGLTILAGLIEK---------------AGDRPYNTYLVCLPDGL-VHRYRKLHLFRRE 115 (261)
T ss_pred --cc--cCCChHHHHHHHHHHHcCcEEEEecccc---------------CCCceeEEEEEECCCCc-EeEEeeecCCccc
Confidence 00 2345778999999999999999999987 44589999999999997 7899999998755
Q ss_pred cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCCh---hhHHHHHHHHHhhhCCceE
Q psy10159 175 AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELP---LLTAVTVHSSWAFSMDVNL 251 (492)
Q Consensus 175 ~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p---~l~~~~~~~~~A~en~v~v 251 (492)
..++.+|+++.+|+++ |+|||++||+|++||++++.+++ +|+|+|++|++|....+ ...+....++||+||++++
T Consensus 116 ~~~~~~G~~~~v~~~~-~~rig~~IC~D~~~pe~~r~l~~-~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~v 193 (261)
T cd07585 116 HPYIAAGDEYPVFATP-GVRFGILICYDNHFPENVRATAL-LGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFV 193 (261)
T ss_pred cceEcCCCCCceEEcC-CceEEEEEEcCCcCcHHHHHHHH-CCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEE
Confidence 5578899999999999 67999999999999999999999 99999999999875432 1233345689999999999
Q ss_pred EEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 252 LSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 252 laan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+++|..|.. ..+.|.|++++|+|++++.++.+ ++++++++||+...
T Consensus 194 v~~n~~g~~~~~~~~G~S~i~~p~G~v~~~~~~~-~e~~l~~~id~~~~ 241 (261)
T cd07585 194 AACNGVGRDGGEVFPGGAMILDPYGRVLAETTSG-GDGMVVADLDLDLI 241 (261)
T ss_pred EEecccccCCCceecceEEEECCCCCEEeccCCC-CCcEEEEEecHHHH
Confidence 999988753 34689999999999999998765 68999999998754
No 24
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=1.5e-36 Score=311.21 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=202.4
Q ss_pred ccCcCCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhc--CCCcEEEcCCCCcCCCCCCCcccCccc
Q psy10159 5 ARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASN--YDVDIIVFPECGLAGTPVPKRRADVKP 82 (492)
Q Consensus 5 ~~s~~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~--~gadIIVfPE~~l~g~~~~~~r~~~~~ 82 (492)
....++.++++||++|++... . ....++++|++++.+++++|++ .|+|||||||++++||... .....
T Consensus 5 ~~~~~~~~~l~VAlvQ~~~~~--~-----~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~--~~~~~- 74 (333)
T PRK13287 5 GSLNKPIEGVLVALIQYPVPV--V-----ESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTK--KWTTE- 74 (333)
T ss_pred CcccCCCCceEEEEEEccccc--C-----CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCcc--ccchh-
Confidence 455566789999999998641 1 0123899999999999999986 4899999999999999751 00000
Q ss_pred ccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEE
Q psy10159 83 YLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQII 162 (492)
Q Consensus 83 ~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii 162 (492)
+ . .+ ...++.++.|+++|+++++++++|+.++.+ ++.++|||+++|+++|+++
T Consensus 75 --~-~--------a~---~~~g~~~~~l~~~a~~~~i~~~~g~~e~~~-------------~~~~~yNsa~vi~~~G~i~ 127 (333)
T PRK13287 75 --E-F--------LC---TVDGPEVDAFAQACKENKVWGVFSIMERNP-------------DGNEPYNTAIIIDDQGEII 127 (333)
T ss_pred --h-h--------cc---cCCCHHHHHHHHHHHHcCeEEEEeeEEEcC-------------CCCceEEEEEEECCCCcEE
Confidence 0 0 01 123578999999999999999999877631 3334999999999999999
Q ss_pred eeeecCCCCccCcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy10159 163 AKYRKFNLFLEYAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHS 241 (492)
Q Consensus 163 ~rYrK~~Lf~e~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~ 241 (492)
++|||+|||.... .+.+|. ...+|+++.|+|||++||||++|||++|.+++ +||++|+.|++|+.... ..|....+
T Consensus 128 ~~YrK~h~~~p~~-~~~pG~~~~~v~~~~~g~kiG~~ICyD~~fPe~~R~~a~-~GAeill~~s~~~~~~~-~~w~~~~~ 204 (333)
T PRK13287 128 LKYRKLHPWVPVE-PWEPGDLGIPVCDGPGGSKLAVCICHDGMFPEMAREAAY-KGANVMIRISGYSTQVR-EQWILTNR 204 (333)
T ss_pred EEEeecccCCccc-cccCCCCCCceEECCCCceEEEEEEecccchHHHHHHHH-CCCeEEEECCccCCcch-hHHHHHHH
Confidence 9999999976443 357787 68899998788999999999999999999999 99999999999875432 23345678
Q ss_pred HHhhhCCceEEEeCCcCCCC--cCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 242 SWAFSMDVNLLSSNYNNPAQ--YGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 242 ~~A~en~v~vlaan~~~~~~--~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|++|++++++||..|... .+.|.|+++||+|+++++.+.. ++++++++|+++..
T Consensus 205 arA~en~~~vv~an~~G~~~~~~~~G~S~Iidp~G~vl~~~~~~-~~~ii~aeid~~~~ 262 (333)
T PRK13287 205 SNAWQNLMYTASVNLAGYDGVFYYFGEGQVCNFDGTTLVQGHRN-PWEIVTAEVRPDLA 262 (333)
T ss_pred HHHHhCCcEEEEEeccccCCCeeeeeeeEEECCCCcEEEeCCCC-CCeEEEEEEeHHHH
Confidence 99999999999999988653 3459999999999999998754 57999999998743
No 25
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.2e-36 Score=304.75 Aligned_cols=242 Identities=20% Similarity=0.186 Sum_probs=197.6
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
+|||++|+++. . +.+.|++++.++|++|+++|+|||||||++++||... +.-..+.
T Consensus 1 ~~ia~~Q~~~~---~---------d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~----------~~~~~~~-- 56 (284)
T cd07573 1 VTVALVQMACS---E---------DPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQ----------EEDEDYF-- 56 (284)
T ss_pred CEEEEEEeecc---C---------CHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcc----------cccchhH--
Confidence 68999999876 3 7899999999999999999999999999999999752 0000000
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc-
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL- 172 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~- 172 (492)
..+. +....+.++.|+++|++++++|++|+.++. +++++||+.++|+++|+++++|+|.||+.
T Consensus 57 -~~~~-~~~~~~~~~~l~~la~~~~i~iv~g~~~~~--------------~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~ 120 (284)
T cd07573 57 -DLAE-PPIPGPTTARFQALAKELGVVIPVSLFEKR--------------GNGLYYNSAVVIDADGSLLGVYRKMHIPDD 120 (284)
T ss_pred -Hhcc-ccCCCHHHHHHHHHHHHCCEEEEecceeeC--------------CCCcEEEEEEEECCCCCEEeEEeeeccCCC
Confidence 0011 013457899999999999999999998773 33589999999999999999999999974
Q ss_pred ---cCcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCC--------hhhHHHHHH
Q psy10159 173 ---EYAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSEL--------PLLTAVTVH 240 (492)
Q Consensus 173 ---e~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~--------p~l~~~~~~ 240 (492)
++..++.+|. ++.+|++++ +|+|++||||++||++++.+++ +|+++|++|++|.... ....+...+
T Consensus 121 ~~~~e~~~~~~G~~~~~~~~~~~-~~ig~~IC~D~~fpe~~r~~~~-~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~ 198 (284)
T cd07573 121 PGYYEKFYFTPGDTGFKVFDTRY-GRIGVLICWDQWFPEAARLMAL-QGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQ 198 (284)
T ss_pred CcccccceecCCCCCCceEecCC-ceEEEEEeccccchHHHHHHHH-CCCCEEEecCcccCCCCCccccCCchHHHHHHH
Confidence 2344678888 899999995 5999999999999999999999 9999999999974311 112345667
Q ss_pred HHHhhhCCceEEEeCCcCCC------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 241 SSWAFSMDVNLLSSNYNNPA------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 241 ~~~A~en~v~vlaan~~~~~------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++||++|++++++||..|.. ..+.|.|.+++|+|++++.++.+ +++++++++|++..
T Consensus 199 ~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~-~~~v~~a~id~~~~ 261 (284)
T cd07573 199 RGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIADPFGEILAQASRD-EEEILVAEFDLDEI 261 (284)
T ss_pred HHHHHHcCceEEEeccccccCCCCCCceeeceeEEECCCCCeeeccCCC-CCcEEEEEecHHHH
Confidence 89999999999999998753 35679999999999999998764 68999999997743
No 26
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=6.4e-37 Score=303.50 Aligned_cols=238 Identities=22% Similarity=0.267 Sum_probs=195.4
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
+||++|+++. . +.++|++++++++++|+++|+|||||||++++||... .. . ..
T Consensus 1 kia~~Q~~~~---~---------d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~--~~--~---~~-------- 53 (265)
T cd07572 1 RVALIQMTST---A---------DKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTD--AF--K---LA-------- 53 (265)
T ss_pred CEEEEEeeCC---C---------CHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcch--hh--h---hh--------
Confidence 5899999876 3 7999999999999999999999999999999998752 10 0 00
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEc-ccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCcc
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVN-LFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLE 173 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g-~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e 173 (492)
++.. ....+.++.|+++|++++++|++| +.++.. +++++||++++|+++|+++++|+|+|||++
T Consensus 54 -~~~~-~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-------------~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~ 118 (265)
T cd07572 54 -LAEE-EGDGPTLQALSELAKEHGIWLVGGSIPERDD-------------DDGKVYNTSLVFDPDGELVARYRKIHLFDV 118 (265)
T ss_pred -hhcc-ccCChHHHHHHHHHHHCCeEEEEeeeccccC-------------CCCcEEEEEEEECCCCeEEeEEeeEEeecc
Confidence 0000 234577899999999999999998 555521 236899999999999999999999999742
Q ss_pred ---------CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHh
Q psy10159 174 ---------YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWA 244 (492)
Q Consensus 174 ---------~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A 244 (492)
+..++.+|+++.+|+++ |+|+|++||+|.+||++++.+++ +|||+|++|++|........+..+.++||
T Consensus 119 ~~p~~~~~~e~~~~~~G~~~~~~~~~-~~~ig~~IC~D~~~pe~~r~~~~-~gadli~~p~~~~~~~~~~~~~~~~~~rA 196 (265)
T cd07572 119 DVPGGISYRESDTLTPGDEVVVVDTP-FGKIGLGICYDLRFPELARALAR-QGADILTVPAAFTMTTGPAHWELLLRARA 196 (265)
T ss_pred cCCCCcccccccccCCCCcceEEecC-CceEEEEEEeccCcHHHHHHHHH-CCCCEEEECCCCCCCcchHHHHHHHHHHH
Confidence 12357889999999999 45999999999999999999999 99999999999876544445556678999
Q ss_pred hhCCceEEEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 245 FSMDVNLLSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 245 ~en~v~vlaan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|++++++||..|.. ..+.|.|.+++|+|++++..+.+ +++++++||++..
T Consensus 197 ~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il~~~~~~--~~~~~~~id~~~~ 251 (265)
T cd07572 197 IENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEG--EGVVVAEIDLDRL 251 (265)
T ss_pred HhcCCEEEEEcccccCCCCCeecceeEEECCCcHHHhhcCCC--CcEEEEEeCHHHH
Confidence 9999999999998864 34678999999999999998743 7899999998743
No 27
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=3.4e-36 Score=304.93 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=193.2
Q ss_pred ceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCC---cccCcccccccCCC
Q psy10159 13 FYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPK---RRADVKPYLITIPT 89 (492)
Q Consensus 13 ~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~---~r~~~~~~~~~vp~ 89 (492)
.+|||++|+.+. .. ..+.++|++++.+++++|+++|||||||||++++||.... .++....|.+.
T Consensus 3 ~~rva~~Q~~~~--~~-------~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~--- 70 (302)
T cd07569 3 QVILAAAQMGPI--AR-------AETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFET--- 70 (302)
T ss_pred eEEEEEEeeccc--cc-------cCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhh---
Confidence 599999999876 21 1167889999999999999999999999999999985410 00000000000
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCC--CeeEEEEEEEcCCCcEEeeeec
Q psy10159 90 PEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDR--NYHYNTNLVFDRQGQIIAKYRK 167 (492)
Q Consensus 90 ~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~--~~~yNT~vvf~~~G~ii~rYrK 167 (492)
...++.++.|+.+|++++++|++|++++.+ ++ ..+||++++|+++|+++++|+|
T Consensus 71 -----------~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-------------~~~~~~~yNsa~~i~~~G~i~~~y~K 126 (302)
T cd07569 71 -----------EMPNPETQPLFDRAKELGIGFYLGYAELTE-------------DGGVKRRFNTSILVDKSGKIVGKYRK 126 (302)
T ss_pred -----------cCCChhHHHHHHHHHHhCeEEEEeceeecC-------------CCCcceeeeEEEEECCCCCEeeeeeE
Confidence 123567889999999999999999988631 22 2799999999999999999999
Q ss_pred CCCCc--c----------CcccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCC--CCh
Q psy10159 168 FNLFL--E----------YAFDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMS--ELP 232 (492)
Q Consensus 168 ~~Lf~--e----------~~~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~--~~p 232 (492)
+||+. | +..++.+|+ ++.+|+|+. +|||++||||++|||+++.++. +|+++|++|+++.. ..+
T Consensus 127 ~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~~~-~rig~~IC~D~~fpe~~r~~a~-~Ga~lll~~~~~~~~~~~~ 204 (302)
T cd07569 127 VHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRVPG-GIMGMCICNDRRWPETWRVMGL-QGVELVLLGYNTPTHNPPA 204 (302)
T ss_pred EecCCCcccCcccccccccccccCCCCCCCceEecCC-ceEEEEEeeccccchHHHHHHH-CCCcEEEeecCCcccCCCc
Confidence 99964 2 223578888 899999994 5999999999999999999999 99999999876422 111
Q ss_pred -------hhHHHHHHHHHhhhCCceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 233 -------LLTAVTVHSSWAFSMDVNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 233 -------~l~~~~~~~~~A~en~v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
...+....++||+||+++++++|..|.. ..+.|.|.+++|+|++++..+.. ++++++++||++..
T Consensus 205 ~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla~~~~~-~e~~~~a~id~~~~ 278 (302)
T cd07569 205 PEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVAQATTL-EDEVIVADCDLDLC 278 (302)
T ss_pred cccchhhHHHHHHHHhhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEEecCCC-CCcEEEEEecHHHh
Confidence 0122234578999999999999998864 34678899999999999998754 57999999998753
No 28
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=3e-36 Score=300.80 Aligned_cols=229 Identities=19% Similarity=0.298 Sum_probs=191.8
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
++||++|+++. .. .+ ...++.++|++++.+++++|+++|+|||||||++++||..
T Consensus 1 ~~ia~~Q~~~~--~~--~~-~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~-------------------- 55 (270)
T cd07571 1 LRVALVQGNIP--QD--EK-WDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ-------------------- 55 (270)
T ss_pred CeEEEEeCCCC--cc--cc-cCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------------
Confidence 58999999877 22 01 1245889999999999999999999999999999988742
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc-
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL- 172 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~- 172 (492)
...+.+++|+++|++++++|++|+.++.. +++++||++++|+|+|+++++|+|.||+.
T Consensus 56 --------~~~~~~~~l~~~ak~~~i~ii~G~~~~~~-------------~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~ 114 (270)
T cd07571 56 --------RDPDALARLARAARAVGAPLLTGAPRREP-------------GGGRYYNSALLLDPGGGILGRYDKHHLVPF 114 (270)
T ss_pred --------cCHHHHHHHHHHHHhcCCeEEEeeeeecc-------------CCCceEEEEEEECCCCCCcCcEeeeeccCC
Confidence 23578999999999999999999988731 22579999999999999999999999963
Q ss_pred -c-----------------CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CCCCC-
Q psy10159 173 -E-----------------YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WMSEL- 231 (492)
Q Consensus 173 -e-----------------~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~~~~- 231 (492)
| +..++.+|+++.+|++++|+|||++||||++|||+++.+++ +|+++|++|++ |+...
T Consensus 115 ~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~vf~~~~~~r~g~~IC~D~~fpe~~r~~~~-~ga~iil~ps~~~~~~~~~ 193 (270)
T cd07571 115 GEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQPLLLGGGVRVGPLICYESIFPELVRDAVR-QGADLLVNITNDAWFGDSA 193 (270)
T ss_pred CCCcCcHHHHHHHHHhcccccCCCCCCCCCCccccCCCceEEEEEEeeeeChHHHHhhcc-cCCCEEEEcCcccccCCCc
Confidence 2 23467899999999999537999999999999999999999 99999999997 44332
Q ss_pred hhhHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 232 PLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 232 p~l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
....+....++||++|++++++|| ..|.|.++||+|+++++++.. ++++++++||++.
T Consensus 194 ~~~~~~~~~~arA~en~~~vv~~n-------~~G~S~ivdp~G~ii~~~~~~-~e~~~~~~i~~~~ 251 (270)
T cd07571 194 GPYQHLAMARLRAIETGRPLVRAA-------NTGISAVIDPDGRIVARLPLF-EAGVLVAEVPLRT 251 (270)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEc-------CCeeeEEECCCCcEEeecCCC-cceEEEEEeccCC
Confidence 223345667899999999999998 458899999999999998754 6899999999874
No 29
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=5.6e-36 Score=298.92 Aligned_cols=240 Identities=23% Similarity=0.309 Sum_probs=200.3
Q ss_pred ceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCC
Q psy10159 13 FYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92 (492)
Q Consensus 13 ~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~ 92 (492)
.+|||++|+.+. .. +...|++++++++++|+++|||||||||++++||... . ..+++..
T Consensus 2 ~~rvA~~Q~~~~--~~---------d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~-~----~~~~~~~----- 60 (274)
T COG0388 2 MMRVAAAQMAPK--AG---------DPAENLARILRLIREAAARGADLVVFPELFLTGYPCE-D----DLFLEEA----- 60 (274)
T ss_pred ceEEEEEEecCC--CC---------CHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcc-c----HHHHHhh-----
Confidence 589999999986 34 7899999999999999999999999999999999872 0 0011111
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc
Q psy10159 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL 172 (492)
Q Consensus 93 ~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~ 172 (492)
.. ...++.++.|..+|+++.++|+.+.... .. ..||+.++++++|+++++|||+|||+
T Consensus 61 -----~~-~~~~~~~~~l~~~a~~~~~~ivg~~~~~---------------~~-~~~~~~~~i~~~G~ii~~y~K~hl~~ 118 (274)
T COG0388 61 -----AA-EAGEETLEFLAALAEEGGVIIVGGPLPE---------------RE-KLYNNAALIDPDGEILGKYRKLHLFD 118 (274)
T ss_pred -----hh-ccCChHHHHHHHHHHhCCeEEEEeeeec---------------cc-cceeeEEEEcCCCcEEeEEeeecCCC
Confidence 00 2456889999999997777776664433 22 78999999999999999999999996
Q ss_pred c---CcccCCCCCCc-eEEEcCCCCeEEEEEeccCCChHHHHHH-HHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhC
Q psy10159 173 E---YAFDTTPQPEM-ITFNTDFGVTFGTFTCFDILFPQPAVQL-VKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSM 247 (492)
Q Consensus 173 e---~~~~~~~g~e~-~vf~t~fGvk~G~~IC~Di~Fpe~a~~L-~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en 247 (492)
. ++..+.+|++. .+|+++ |+|+|+.||+|++|||.++.+ +. .|+++|++|++|.......+|..+.++||++|
T Consensus 119 ~~~~e~~~~~~G~~~~~v~~~~-~~kig~~IC~D~~fPe~~~~~~a~-~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en 196 (274)
T COG0388 119 AFYEERRFFTPGDEGVVVFETD-GGKIGLLICYDLRFPELARRLLAL-GGAELLLVPAAWPAERGLDHWEVLLRARAIEN 196 (274)
T ss_pred CccchhhhccCCCccceeEEeC-CceEEEEEEeeccCHHHHHHHHHh-cCCeEEEEcCCCCCcccHHHHHHHHHHHhhhc
Confidence 3 56688999888 499999 569999999999999988888 66 89999999999988655556777899999999
Q ss_pred CceEEEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 248 DVNLLSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 248 ~v~vlaan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
+++++++|..|.. ..+.|.|++++|+|+++++...+ ++++++++++....
T Consensus 197 ~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~~~~~~-~e~~~~~~id~~~~ 249 (274)
T COG0388 197 QVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAEAGEE-EEGVLLADIDLAEL 249 (274)
T ss_pred CceEEEecccCCCCCccEEecceEEECCCccEEeecCCC-CCcEEEEEECHHHH
Confidence 9999999998865 56999999999999999998754 68999999998754
No 30
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8e-36 Score=298.45 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=193.4
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCc---ccccccCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADV---KPYLITIPTP 90 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~---~~~~~~vp~~ 90 (492)
|+||++|+.+. +. + +.++|+++++++|++|+++|||||||||++++||..- ..... ..+.....
T Consensus 1 m~va~~Q~~~~--~~---~-----~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~-~~~~~~~~~~~~~~~~-- 67 (280)
T cd07574 1 VRVAAAQYPLR--RY---A-----SFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSL-LPEAIDGLDEAIRALA-- 67 (280)
T ss_pred CeeEEEEccCc--CC---C-----CHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHh-CCcccccHHHHHHHHH--
Confidence 68999999875 31 1 7899999999999999999999999999999885310 00000 00000000
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccc-ccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLF-EIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFN 169 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~-ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~ 169 (492)
...++.++.|+++|++++++|++|.. ++ +++++||++++|+|+|.+ ++|+|.|
T Consensus 68 ----------~~~~~~~~~l~~~a~~~~i~iv~G~~~~~---------------~~~~~yNs~~~i~~~G~v-~~y~K~~ 121 (280)
T cd07574 68 ----------ALTPDYVALFSELARKYGINIIAGSMPVR---------------EDGRLYNRAYLFGPDGTI-GHQDKLH 121 (280)
T ss_pred ----------HHHHHHHHHHHHHHHHhCCEEEecceEEc---------------CCCCeEEEEEEECCCCCE-EEEeeec
Confidence 12357899999999999999999964 44 456899999999999987 9999999
Q ss_pred CCc--cCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhC
Q psy10159 170 LFL--EYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSM 247 (492)
Q Consensus 170 Lf~--e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en 247 (492)
|+. ++.+.+.+|+++.+|+++ |+|||++||||++||++++.+++ +|+++|++|++|.....+.++....++||+||
T Consensus 122 l~~~e~~~~~~~~G~~~~v~~~~-~~~ig~~IC~D~~fpe~~r~l~~-~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en 199 (280)
T cd07574 122 MTPFEREEWGISGGDKLKVFDTD-LGKIGILICYDSEFPELARALAE-AGADLLLVPSCTDTRAGYWRVRIGAQARALEN 199 (280)
T ss_pred cCchhhhcccccCCCCceEEecC-CccEEEEEecccccHHHHHHHHH-cCCCEEEECCcCCccccHHHHHHHHHHHHHhh
Confidence 986 334567899999999999 45999999999999999999999 99999999999875544444445678999999
Q ss_pred CceEEEeCCcCCC------CcCCCccEEECCC------CcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 248 DVNLLSSNYNNPA------QYGGGSGIYAGRQ------GIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 248 ~v~vlaan~~~~~------~~~~Gssi~~~~~------G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++++++||..|.. ..+.|.|.+++|. |.++++.... ++.++++++|++..
T Consensus 200 ~~~vv~an~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~-~e~~~~a~iD~~~~ 261 (280)
T cd07574 200 QCYVVQSGTVGNAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPN-TEGWLIADLDLEAL 261 (280)
T ss_pred CceEEEeCCCCCCCCccccccccccceeecCCCCCCCCCCeEeecCCC-CCceEEEecCHHHH
Confidence 9999999998854 2456888889985 8888887644 58999999998753
No 31
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=1.9e-35 Score=289.79 Aligned_cols=236 Identities=26% Similarity=0.349 Sum_probs=199.0
Q ss_pred EEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCC
Q psy10159 16 AAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAI 95 (492)
Q Consensus 16 aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~ 95 (492)
||++|+++. +. +.++|++++++++++|+++|+|||||||++++||... . ....+
T Consensus 1 ia~~Q~~~~--~~---------~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~--~--------~~~~~----- 54 (253)
T cd07197 1 IAAVQLAPK--IG---------DVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFE--S--------AKEDL----- 54 (253)
T ss_pred CEEEEccCC--CC---------CHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccc--c--------chhhh-----
Confidence 689999987 44 8999999999999999999999999999999999762 1 00000
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc-cC
Q psy10159 96 PYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL-EY 174 (492)
Q Consensus 96 pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~-e~ 174 (492)
.+.. ....+.++.|+++|++++++|++|+.++ +++++||+.++|+++|+++.+|+|.||+. .+
T Consensus 55 ~~~~-~~~~~~~~~l~~~a~~~~i~ii~G~~~~---------------~~~~~~N~~~~i~~~G~i~~~~~K~~l~~~~E 118 (253)
T cd07197 55 DLAE-ELDGPTLEALAELAKELGIYIVAGIAEK---------------DGDKLYNTAVVIDPDGEIIGKYRKIHLFDFGE 118 (253)
T ss_pred hhcc-cCCchHHHHHHHHHHHhCeEEEeeeEEc---------------cCCceEEEEEEECCCCeEEEEEEEeecCCCcc
Confidence 0111 2345789999999999999999999877 44589999999999999999999999976 55
Q ss_pred cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceEEEe
Q psy10159 175 AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSS 254 (492)
Q Consensus 175 ~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~vlaa 254 (492)
..++.+|+...+|+++ |+|||++||+|++||++++.+++ +|+|+|++|++|.... ...+....++||++|+++++.|
T Consensus 119 ~~~~~~g~~~~~f~~~-~~~ig~~IC~d~~~~~~~~~~~~-~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~ 195 (253)
T cd07197 119 RRYFSPGDEFPVFDTP-GGKIGLLICYDLRFPELARELAL-KGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAA 195 (253)
T ss_pred cceecCCCCCceEEcC-CceEEEEEEecCCCcHHHHHHHH-CCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEe
Confidence 5578899999999999 56999999999999999999998 9999999999987643 3455677889999999999999
Q ss_pred CCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 255 NYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 255 n~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
|..|.. ..+.|.|.+++|+|++++..+.. ++++++++|+...
T Consensus 196 n~~G~~~~~~~~G~S~i~~p~G~~~~~~~~~--~~~~~~~id~~~~ 239 (253)
T cd07197 196 NRVGEEGGLEFAGGSMIVDPDGEVLAEASEE--EGILVAELDLDEL 239 (253)
T ss_pred cCCCCCCCccccceeEEECCCCceeeecCCC--CcEEEEEeCHHHH
Confidence 998753 45678899999999999998754 7999999998743
No 32
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=4.7e-36 Score=297.00 Aligned_cols=234 Identities=22% Similarity=0.207 Sum_probs=188.0
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. .. +.++|++++.+++++|+++|+|||||||++++||... +....+
T Consensus 1 ria~~Q~~~~--~~---------d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~----------~~~~~~---- 55 (261)
T cd07570 1 RIALAQLNPT--VG---------DLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPE----------DLLLRP---- 55 (261)
T ss_pred CEEEEeCCCc--CC---------CHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChH----------HHhhCH----
Confidence 5899999887 34 8999999999999999999999999999999999751 100000
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC--c
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF--L 172 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf--~ 172 (492)
... ....+.++.|++.+++++++|++|+.++ +++++||+.++| ++|+++++|+|.||. +
T Consensus 56 --~~~-~~~~~~~~~la~~~~~~~i~ii~G~~~~---------------~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~ 116 (261)
T cd07570 56 --DFL-EAAEEALEELAAATADLDIAVVVGLPLR---------------HDGKLYNAAAVL-QNGKILGVVPKQLLPNYG 116 (261)
T ss_pred --HHH-HHHHHHHHHHHHhcccCCcEEEEeceEe---------------cCCCEEEEEEEE-eCCEEEEEEECccCcCCc
Confidence 000 1123567777777777899999999887 446799999999 599999999999994 3
Q ss_pred c--CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHH-HHHHHHhCCCcEEEEeCCCCCCCh-hhHHHHHHHHHhhhCC
Q psy10159 173 E--YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQP-AVQLVKQKNITDFVYTAAWMSELP-LLTAVTVHSSWAFSMD 248 (492)
Q Consensus 173 e--~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~-a~~L~~~~Gad~iv~ptaw~~~~p-~l~~~~~~~~~A~en~ 248 (492)
+ +..++.+|+...+|+++ |+|||++||||++||++ ++.+++ +||++|++|++|..... ...+..+.++||+||+
T Consensus 117 ~~~e~~~~~~G~~~~~~~~~-~~~ig~~IC~D~~fpe~~~r~~~~-~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~ 194 (261)
T cd07570 117 VFDEKRYFTPGDKPDVLFFK-GLRIGVEICEDLWVPDPPSAELAL-AGADLILNLSASPFHLGKQDYRRELVSSRSARTG 194 (261)
T ss_pred cccccccCccCCCCCeEEEC-CEEEEEEeecccCCCCchHHHHHH-cCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhC
Confidence 2 33468899999999999 66999999999999999 999999 99999999999864322 2233456789999999
Q ss_pred ceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 249 VNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 249 v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
+++++||..|.. ..+.|.|.+++|+|++++..+.. +..++++|.+.
T Consensus 195 ~~vv~~n~~g~~~~~~~~G~S~ii~p~G~vl~~~~~~---~~~~~~id~~~ 242 (261)
T cd07570 195 LPYVYVNQVGGQDDLVFDGGSFIADNDGELLAEAPRF---EEDLADVDLDR 242 (261)
T ss_pred CcEEEEeCCCCCceEEEECceEEEcCCCCEEEecCcc---eEEEEEEEEec
Confidence 999999997653 34679999999999999998643 67777777664
No 33
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-35 Score=294.36 Aligned_cols=235 Identities=21% Similarity=0.218 Sum_probs=190.7
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHA 94 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~ 94 (492)
|||++|+.+. +. +++.|++++++++++|+++|||||||||++++||... +...+.
T Consensus 1 kia~~q~~~~--~~---------~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~----------~~~~~~---- 55 (269)
T cd07586 1 RVAIAQIDPV--LG---------DVEENLEKHLEIIETARERGADLVVFPELSLTGYNLG----------DLVYEV---- 55 (269)
T ss_pred CEEEEecCCc--cC---------cHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCch----------hhhhhh----
Confidence 5899999877 34 8999999999999999999999999999999999762 111000
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc--
Q psy10159 95 IPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL-- 172 (492)
Q Consensus 95 ~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~-- 172 (492)
.. ....+.++.|+++|+ +++|++|+.++. +++++||++++| ++|+++++|+|+||..
T Consensus 56 --~~--~~~~~~~~~l~~~a~--~~~ii~G~~~~~--------------~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~ 114 (269)
T cd07586 56 --AM--HADDPRLQALAEASG--GICVVFGFVEEG--------------RDGRFYNSAAYL-EDGRVVHVHRKVYLPTYG 114 (269)
T ss_pred --hc--ccchHHHHHHHHHcC--CCEEEEeCeEEc--------------CCCcEEEEEEEe-cCCEEEEEEEeEeCCCCC
Confidence 00 123467788887773 799999998873 346899999999 8999999999999832
Q ss_pred --cCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCC------hhhHHHHHHHHHh
Q psy10159 173 --EYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSEL------PLLTAVTVHSSWA 244 (492)
Q Consensus 173 --e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~------p~l~~~~~~~~~A 244 (492)
++..++.+|.++.+|+|+ |+|||++||+|++||++++.+++ +|||+|++|++|.... ....+.++.++||
T Consensus 115 ~~~e~~~~~~G~~~~vf~~~-~~~ig~~IC~D~~fp~~~~~~~~-~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA 192 (269)
T cd07586 115 LFEEGRYFAPGSHLRAFDTR-FGRAGVLICEDAWHPSLPYLLAL-DGADVIFIPANSPARGVGGDFDNEENWETLLKFYA 192 (269)
T ss_pred ccceeeeecCCCcceEEEeC-CeEEEEEEEeccCCcHHHHHHHH-CCCCEEEEeCCCccccCccccchhHHHHHHHHHHH
Confidence 233367899999999999 56999999999999999999998 9999999999964321 1124556789999
Q ss_pred hhCCceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 245 FSMDVNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 245 ~en~v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++|++++++||..|.. ..+.|.|.+++|+|++++..+.+ ++++++++||++..
T Consensus 193 ~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G~il~~~~~~-~~~~~~~~id~~~~ 247 (269)
T cd07586 193 MMNGVYVVFANRVGVEDGVYFWGGSRVVDPDGEVVAEAPLF-EEDLLVAELDRSAI 247 (269)
T ss_pred HHhCCeEEEEeeecCcCCceEeCCcEEECCCCCEEEecCCc-cccEEEEEecHHHH
Confidence 9999999999998864 33568889999999999998754 57899999998754
No 34
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=6.2e-35 Score=288.05 Aligned_cols=230 Identities=17% Similarity=0.170 Sum_probs=190.9
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
|+||++|+.+. +. +++.|+++++++|++|++ |+|||||||++++||... . .....
T Consensus 1 mkia~~Q~~~~--~~---------d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~--~-------~~~~~---- 55 (252)
T cd07575 1 LKIALIQTDLV--WE---------DPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMN--A-------EALAE---- 55 (252)
T ss_pred CEEEEEEeecC--cC---------CHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCcc--H-------HHhhc----
Confidence 68999999988 54 899999999999999998 999999999999999752 1 00100
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc-
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL- 172 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~- 172 (492)
....+.+++|+.+|++++++|++|+.++ +++++||++++|+++|++ ..|+|.||++
T Consensus 56 -------~~~~~~~~~l~~la~~~~i~i~~~~~~~---------------~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~ 112 (252)
T cd07575 56 -------PMNGPTLQWMKAQAKKKGAAITGSLIIK---------------EGGKYYNRLYFVTPDGEV-YHYDKRHLFRM 112 (252)
T ss_pred -------ccCChHHHHHHHHHHHCCeEEEEEEEEc---------------cCCceEEEEEEECCCCCE-EEEeeeecCCC
Confidence 1235679999999999999999888877 446799999999999985 5999999974
Q ss_pred -cCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhhhCCceE
Q psy10159 173 -EYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNL 251 (492)
Q Consensus 173 -e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~en~v~v 251 (492)
++..++.+|.+..+|+++ |+|+|++||||++|||+++.++ ++++|++|++|+... ...+....++||++|++++
T Consensus 113 ~~e~~~~~~G~~~~~~~~~-~~~ig~~IC~D~~~pe~~r~~~---~a~lil~~s~~~~~~-~~~~~~~~~arA~en~~~v 187 (252)
T cd07575 113 AGEHKVYTAGNERVIVEYK-GWKILLQVCYDLRFPVWSRNTN---DYDLLLYVANWPAPR-RAAWDTLLKARAIENQAYV 187 (252)
T ss_pred CCccceecCCCCceEEEEC-CEEEEEEEEeccCChHHHHhhc---CCCEEEEeCCCCCCc-hHHHHHHhHHHHhhccceE
Confidence 334468889999999999 6799999999999999999864 399999999997642 2234446688999999999
Q ss_pred EEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 252 LSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 252 laan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
++||..|.. ..+.|.|.+++|+|++++++... ++++++++++...
T Consensus 188 v~~n~~G~~~~~~~~~G~S~i~~p~G~~l~~~~~~--e~~i~~~id~~~~ 235 (252)
T cd07575 188 IGVNRVGTDGNGLEYSGDSAVIDPLGEPLAEAEED--EGVLTATLDKEAL 235 (252)
T ss_pred EEecccccCCCCceEcceeEEECCCCceeeEcCCC--ceEEEEEECHHHH
Confidence 999998864 34679999999999999998643 7899999998743
No 35
>KOG0807|consensus
Probab=100.00 E-value=2.8e-35 Score=276.84 Aligned_cols=246 Identities=20% Similarity=0.260 Sum_probs=198.9
Q ss_pred cCCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccC
Q psy10159 8 SSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITI 87 (492)
Q Consensus 8 ~~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~v 87 (492)
+.-...-+|||.|+... . |+.+|++...++|.+|+++||++|.|||.+= |.-. ++ .+.+
T Consensus 10 Mat~~~~~vAv~Qm~S~---~---------Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~-n~------~esi 68 (295)
T KOG0807|consen 10 MATSKLKRVAVAQMTSS---N---------DLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQ-NP------LESI 68 (295)
T ss_pred HhhcccceeEEEeeccc---h---------HHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcC-Cc------ccce
Confidence 33344488999999887 3 8999999999999999999999999999852 3221 11 1111
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccc-ccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeee
Q psy10159 88 PTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLF-EIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYR 166 (492)
Q Consensus 88 p~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~-ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYr 166 (492)
- -.+ ..++++++...++||+++|+|-+|.. ++.+ . +..+++|+-++++.+|+++++|+
T Consensus 69 ~--------Lae-~l~~k~m~~y~elar~~nIwlSlgg~~~r~~-----------~-~~~k~~N~hl~id~~G~i~a~Y~ 127 (295)
T KOG0807|consen 69 E--------LAE-PLDGKFMEQYRELARSHNIWLSLGGHHERSD-----------D-GNQKLRNTHLLIDSKGEIRAEYQ 127 (295)
T ss_pred e--------ccc-ccChHHHHHHHHHHHhcCeeEEeccccCCCc-----------c-ccceeeeeEEEEcCCchHHHHHh
Confidence 0 011 35689999999999999999999854 4421 0 34689999999999999999999
Q ss_pred cCCCCccC---------cccCCCCCCce-EEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHH
Q psy10159 167 KFNLFLEY---------AFDTTPQPEMI-TFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTA 236 (492)
Q Consensus 167 K~~Lf~e~---------~~~~~~g~e~~-vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~ 236 (492)
|.|||+-+ .-...+|+.+. ..+||.| |+|..||||++|||++..|.+ +||+++.+|+|+.......+|
T Consensus 128 KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~G-klGlaICYDiRFpE~sl~LR~-~gA~iLtyPSAFT~~TG~AHW 205 (295)
T KOG0807|consen 128 KLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLG-KLGLAICYDIRFPELSLKLRK-MGAQILTYPSAFTIKTGEAHW 205 (295)
T ss_pred hhceeEeecCCCcccccccCcCCCcccCCccCCccc-ccceeeeeeccCchHHHHHHH-cCCcEEeccchhhhcccHHHH
Confidence 99999732 11345776654 4899998 999999999999999999998 999999999998776666778
Q ss_pred HHHHHHHhhhCCceEEEeCCcCC---CCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 237 VTVHSSWAFSMDVNLLSSNYNNP---AQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 237 ~~~~~~~A~en~v~vlaan~~~~---~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
..+.++||+|+++||+||++.|- ...+.|.|+++||+|.|++........++.+|+||++-
T Consensus 206 EiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva~~se~~~~~l~~AdiDlsl 269 (295)
T KOG0807|consen 206 EILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVARCSERTGPGLILADIDLSL 269 (295)
T ss_pred HHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhheecCCCCCCceEEEEccHHH
Confidence 88999999999999999988764 35688999999999999999875435899999999863
No 36
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=8.2e-34 Score=286.47 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=158.9
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhc----CCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASN----YDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~----~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
+||++|+.+. +. ++++|+++++++|++|++ +++|||||||++++||... ....+..+++.
T Consensus 1 rIA~vQ~~~~--~~---------d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~-~~~~~~~~ae~---- 64 (295)
T cd07566 1 RIACLQLNPQ--IG---------QVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFH-SLEHIKPYLEP---- 64 (295)
T ss_pred CEEEEECCCc--cC---------CHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcc-cHHHHHHHHHh----
Confidence 5899999977 34 899999999999999988 8999999999999999762 11111111110
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCC-CCeeEEEEEEEcCCCcEEeeeecCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQD-RNYHYNTNLVFDRQGQIIAKYRKFN 169 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~-~~~~yNT~vvf~~~G~ii~rYrK~~ 169 (492)
...++.++.|+++|++++++|++|+.++.. + ++++|||+++|+++|+++++|||+|
T Consensus 65 ----------~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~-------------~~~~~~yNta~vi~~~G~ii~~YrK~H 121 (295)
T cd07566 65 ----------TTSGPSFEWAREVAKKFNCHVVIGYPEKVD-------------ESSPKLYNSALVVDPEGEVVFNYRKSF 121 (295)
T ss_pred ----------cCCCHHHHHHHHHHHhcCCEEEEeeeEecC-------------CCCCceEEEEEEEcCCCeEEEEEeccc
Confidence 123577899999999999999999988731 2 1479999999999999999999999
Q ss_pred CCccCc--------ccCC------CCCCce--EEEcCCCCeEEEEEeccCC---C--h----HHHHHHHHhCCCcEEEEe
Q psy10159 170 LFLEYA--------FDTT------PQPEMI--TFNTDFGVTFGTFTCFDIL---F--P----QPAVQLVKQKNITDFVYT 224 (492)
Q Consensus 170 Lf~e~~--------~~~~------~g~e~~--vf~t~fGvk~G~~IC~Di~---F--p----e~a~~L~~~~Gad~iv~p 224 (492)
||+.+. ..+. +|.+.. ++.+. |+|+|++||||++ | | |++|.+++ +|||+|++|
T Consensus 122 L~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~-~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~-~Gadii~~p 199 (295)
T cd07566 122 LYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDV-TLKTSIGICMDLNPYKFEAPFTDFEFATHVLD-NGTELIICP 199 (295)
T ss_pred cCCCCcccccCCCCCccccccccccccccccccccCC-cceeEEEEEecCCcccccCCcchHHHHHHHHH-CCCCEEEEe
Confidence 985211 0111 444432 23334 6799999999996 7 5 99999999 999999999
Q ss_pred CCCCCCChh-----------hHHHHHHHHHh------hhCCceEEEeCCcCCC--CcCCCccEEE
Q psy10159 225 AAWMSELPL-----------LTAVTVHSSWA------FSMDVNLLSSNYNNPA--QYGGGSGIYA 270 (492)
Q Consensus 225 taw~~~~p~-----------l~~~~~~~~~A------~en~v~vlaan~~~~~--~~~~Gssi~~ 270 (492)
++|+..... .......++|| +||+++|++||+.|.+ ..+.|+|+++
T Consensus 200 aaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN~~~vv~~Nr~G~~~~~~f~G~S~i~ 264 (295)
T cd07566 200 MAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLEGTQVVFCNRIGTENDTLYAGSSAVI 264 (295)
T ss_pred chhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCCceEEEEEeccCccCCceecCcccee
Confidence 999864221 01012344555 4999999999998865 3455655544
No 37
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=8.4e-33 Score=301.01 Aligned_cols=234 Identities=20% Similarity=0.201 Sum_probs=191.9
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
+|||++|+++. +. +.+.|++++.++|++|+++|||||||||++++||... +....+
T Consensus 1 mkIAl~Q~~~~--~g---------d~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~----------d~~~~~--- 56 (540)
T PRK13981 1 LRIALAQLNPT--VG---------DIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPE----------DLLLRP--- 56 (540)
T ss_pred CEEEEEeCCCC--CC---------CHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChh----------hhhcCH---
Confidence 68999999987 44 8999999999999999999999999999999999762 111010
Q ss_pred CCCCCCCCCchHHHHHHHHHHHh--CCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKD--SNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF 171 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~--~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf 171 (492)
.......+.|..+|++ ++++|++|++++ +++++||++++|+ +|+++++|+|+||+
T Consensus 57 -------~~~~~~~~~l~~La~~~~~~i~ii~G~~~~---------------~~~~~yNsa~vi~-~G~i~~~y~K~~L~ 113 (540)
T PRK13981 57 -------AFLAACEAALERLAAATAGGPAVLVGHPWR---------------EGGKLYNAAALLD-GGEVLATYRKQDLP 113 (540)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCEEEEeCcEe---------------eCCcEEEEEEEEE-CCeEEEEEeeeeCC
Confidence 0112334556666666 799999999877 4457999999998 89999999999994
Q ss_pred --cc--CcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCCh-hhHHHHHHHHHhhh
Q psy10159 172 --LE--YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELP-LLTAVTVHSSWAFS 246 (492)
Q Consensus 172 --~e--~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p-~l~~~~~~~~~A~e 246 (492)
++ +..++.+|++..+|+++ |+|||++||+|++||++++.+++ +||++|++|++|..... ...+..+.++||+|
T Consensus 114 ~~~~~~E~~~f~~G~~~~~~~~~-g~rigv~IC~D~~~pe~~r~la~-~Gadlil~psa~~~~~~~~~~~~~~~~~rA~E 191 (540)
T PRK13981 114 NYGVFDEKRYFAPGPEPGVVELK-GVRIGVPICEDIWNPEPAETLAE-AGAELLLVPNASPYHRGKPDLREAVLRARVRE 191 (540)
T ss_pred CCCCcCccccccCCCCceEEEEC-CEEEEEEEehhhcCCcHHHHHHH-CCCcEEEEcCCCcccCCcHHHHHHHHHHHHHH
Confidence 22 23478899999999999 67999999999999999999999 99999999999754321 22334678899999
Q ss_pred CCceEEEeCCcCCC--CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 247 MDVNLLSSNYNNPA--QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 247 n~v~vlaan~~~~~--~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
|++++++||..|.. ..+.|.|.+++|+|+++++.+.+ +++++++++++..
T Consensus 192 n~~~vv~aN~vG~~~~~~f~G~S~i~dp~G~il~~~~~~-~e~~l~~did~~~ 243 (540)
T PRK13981 192 TGLPLVYLNQVGGQDELVFDGASFVLNADGELAARLPAF-EEQIAVVDFDRGE 243 (540)
T ss_pred hCCeEEEEecccCCCceEEeCceEEECCCCCEeeecCCC-CCcEEEEEEeecC
Confidence 99999999998753 45789999999999999998765 6899999999853
No 38
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.97 E-value=4.9e-31 Score=293.16 Aligned_cols=241 Identities=19% Similarity=0.148 Sum_probs=186.1
Q ss_pred CCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCC
Q psy10159 9 SSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIP 88 (492)
Q Consensus 9 ~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp 88 (492)
...+.+|||++|+++. +. +++.|++++.++|++|+++|||||||||++++||... +...
T Consensus 8 ~~~~~mrIAlaQ~~~~--~g---------D~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~----------dl~~ 66 (679)
T PRK02628 8 YRHGFVRVAAATPKVR--VA---------DPAFNAARILALARRAADDGVALAVFPELSLSGYSCD----------DLFL 66 (679)
T ss_pred hhCCcEEEEEEeCCcc--cC---------CHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcc----------hhhc
Confidence 3457899999999987 44 8999999999999999999999999999999999862 1110
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecC
Q psy10159 89 TPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKF 168 (492)
Q Consensus 89 ~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~ 168 (492)
.+.. . ....+.++.|+.+|++++++|++|++++ .++++||++++|+ +|+++++|+|+
T Consensus 67 ~~~~-~------~~~~~~l~~L~~~a~~~~i~ivvG~p~~---------------~~~~lyNsa~vi~-~G~il~~y~K~ 123 (679)
T PRK02628 67 QDTL-L------DAVEDALATLVEASADLDPLLVVGAPLR---------------VRHRLYNCAVVIH-RGRILGVVPKS 123 (679)
T ss_pred cHHH-H------HhhHHHHHHHHHHHhhcCEEEEEeeEEE---------------ECCEEEEEEEEEc-CCEEEEEeccc
Confidence 0000 0 1234788999999999999999998876 3457999999998 79999999999
Q ss_pred CCCcc----CcccCCCCCCc-----------------eEEEc---CCCCeEEEEEeccCCChHH-HHHHHHhCCCcEEEE
Q psy10159 169 NLFLE----YAFDTTPQPEM-----------------ITFNT---DFGVTFGTFTCFDILFPQP-AVQLVKQKNITDFVY 223 (492)
Q Consensus 169 ~Lf~e----~~~~~~~g~e~-----------------~vf~t---~fGvk~G~~IC~Di~Fpe~-a~~L~~~~Gad~iv~ 223 (492)
||+.. +..++.+|.++ .+|++ + |+|||+.||+|+||||+ .+.++. +|||+|++
T Consensus 124 hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~~~~~~-g~kiGv~IC~DlwfPe~~~~~la~-~GAdIil~ 201 (679)
T PRK02628 124 YLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFEAEDLP-GFVFGVEICEDLWVPIPPSSYAAL-AGATVLAN 201 (679)
T ss_pred cCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEEecccC-CcEEEEEEeccccccCchhhHHhc-CCCEEEEe
Confidence 99642 33367888652 24544 5 68999999999999997 588998 99999999
Q ss_pred eCCCCCCChh-hHHHHHHHHHhhhCCceEEEeC-CcCC---CCcCCCccEEECCCCcEEEEcCCC-CCCeEEEEEeeCC
Q psy10159 224 TAAWMSELPL-LTAVTVHSSWAFSMDVNLLSSN-YNNP---AQYGGGSGIYAGRQGIKVAVMPQY-TGSQLLISRVPKK 296 (492)
Q Consensus 224 ptaw~~~~p~-l~~~~~~~~~A~en~v~vlaan-~~~~---~~~~~Gssi~~~~~G~v~~~~~~~-~~~~llva~v~~~ 296 (492)
|++|+....- .....+.+++|.+++..++.+| ..|. ...+.|.|++++ +|.++++++.+ .++.++++++|++
T Consensus 202 psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~ 279 (679)
T PRK02628 202 LSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGESTTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLE 279 (679)
T ss_pred CCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCCCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHH
Confidence 9999754332 2223456677777755555554 4543 355789999998 99999998643 2356999999876
No 39
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=7.7e-31 Score=283.58 Aligned_cols=232 Identities=18% Similarity=0.298 Sum_probs=186.6
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
.++++||++|.+.. .. .+. ..++.++|++++.+++++ +++++|+|||||.+++++..
T Consensus 217 ~~~~~ValvQ~ni~--~~--~k~-~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~~----------------- 273 (505)
T PRK00302 217 EPALKVALVQGNIP--QS--LKW-DPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLLE----------------- 273 (505)
T ss_pred CCCcEEEEECCCCC--hh--ccc-CHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCcccccccc-----------------
Confidence 35799999999877 21 111 224678899999999984 45789999999998864421
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL 170 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L 170 (492)
....+.++.++++|++++++|++|..++.. +. ++.++||+.+++++ |+++.+|+|.||
T Consensus 274 ----------~~~~~~~~~l~~~a~~~~~~il~G~~~~~~----------~~-~~~~~yNsa~~i~~-g~~~~~Y~K~~L 331 (505)
T PRK00302 274 ----------DLPQAFLKALDDLAREKGSALITGAPRAEN----------KQ-GRYDYYNSIYVLGP-YGILNRYDKHHL 331 (505)
T ss_pred ----------cccHHHHHHHHHHHHhCCCEEEEecccccC----------CC-CCCceeeEEEEECC-CCCcCccccccc
Confidence 123456789999999999999999887631 00 12268999999998 889999999999
Q ss_pred --CccC-----------c------ccCCCCC-CceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CC
Q psy10159 171 --FLEY-----------A------FDTTPQP-EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WM 228 (492)
Q Consensus 171 --f~e~-----------~------~~~~~g~-e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~ 228 (492)
|+|. + -++.+|+ +..+++++ |+|+|+.||||..|||.+|++++ +|+|+|++|++ |+
T Consensus 332 vPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~ig~~ICyE~~fpe~~r~~~~-~ga~~lv~~snd~Wf 409 (505)
T PRK00302 332 VPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQPPLLAK-GLKLAPLICYEIIFPEEVRANVR-QGADLLLNISNDAWF 409 (505)
T ss_pred CCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCCCCCcccC-CceEEEEEeehhcChHHHHhhcc-CCCCEEEEccchhhc
Confidence 5663 0 1567887 78899999 67999999999999999999998 99999999998 87
Q ss_pred CCCh-hhHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 229 SELP-LLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 229 ~~~p-~l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
.... ..++.++.+.||+||++++++|+ ++|.|.++||+|+++++.+.+ +++++++++|+..
T Consensus 410 ~~~~~~~qh~~~~~~RAiEng~~vvra~-------n~G~Saiidp~G~i~~~~~~~-~~~~l~~~i~~~~ 471 (505)
T PRK00302 410 GDSIGPYQHFQMARMRALELGRPLIRAT-------NTGITAVIDPLGRIIAQLPQF-TEGVLDGTVPPTT 471 (505)
T ss_pred CCCCchHHHHHHHHHHHHHhCCceEEec-------CceeeEEECCCCCEeeecCCC-ceeEEEEEeccCC
Confidence 6442 23456778899999999999997 679999999999999998764 7899999999863
No 40
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.97 E-value=1.4e-30 Score=273.16 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=173.2
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
.++++||++|.++. .. .....++.++|++++.+++++|++ ++|+|||||.+++++..
T Consensus 157 ~~~~~ValvQ~n~~--~~---~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~----------------- 213 (391)
T TIGR00546 157 GPTLNVALVQPNIP--QD---LKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLE----------------- 213 (391)
T ss_pred CCcceEEEEcCCCC--cc---cccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchh-----------------
Confidence 45799999999877 22 112234678999999999999877 89999999999986643
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL 170 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L 170 (492)
....+.++.|+.+|++++++|++|..++.+ . ++.++||++++++++|+++.+|+|+||
T Consensus 214 ----------~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~-----------~-~~~~~yNsa~~~~~~G~~~~~Y~K~~L 271 (391)
T TIGR00546 214 ----------NSPQKLADRLKLLVLSKGIPILIGAPDAVP-----------G-GPYHYYNSAYLVDPGGEVVQRYDKVKL 271 (391)
T ss_pred ----------hCcHHHHHHHHHHHHhCCCEEEEecccccC-----------C-CCCceeeEEEEECCCCCccccccceec
Confidence 112346889999999999999999876631 0 113699999999999999999999999
Q ss_pred --CccC------------------cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CC
Q psy10159 171 --FLEY------------------AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WM 228 (492)
Q Consensus 171 --f~e~------------------~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~ 228 (492)
|+|+ ..++.+|++..+|+++ |+|+|++||||..|||..|.+++ +|+|+|++|++ |+
T Consensus 272 vPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~g~~ICyE~~fp~~~r~~~~-~Ga~~lv~~snd~wf 349 (391)
T TIGR00546 272 VPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGPQVLKLP-GGKIAPLICYESIFPDLVRASAR-QGAELLVNLTNDAWF 349 (391)
T ss_pred cCCcCCCChHHHHHHHHHHhccCCccCCCCCCCCCCCcCC-CceeeeeEEeehhchHHHHhhcc-CCCCEEEEecchhhc
Confidence 5553 1256789999999999 67999999999999999999998 99999999998 76
Q ss_pred CCC-hhhHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCcE
Q psy10159 229 SEL-PLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIK 276 (492)
Q Consensus 229 ~~~-p~l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~v 276 (492)
... ...++.++.+.||+||++++++|| ++|.|.++||+|++
T Consensus 350 ~~s~~~~qh~~~~~~RAiEn~~~vvra~-------n~G~S~vidp~G~i 391 (391)
T TIGR00546 350 GDSSGPWQHFALARFRAIENGRPLVRAT-------NTGISAVIDPRGRT 391 (391)
T ss_pred CCCCChHHHHHHHHHHHHHhCCcEEEec-------CCceeEEECCCCCC
Confidence 643 223456778999999999999998 67999999999975
No 41
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.97 E-value=4.6e-30 Score=285.09 Aligned_cols=237 Identities=14% Similarity=0.063 Sum_probs=175.4
Q ss_pred ceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCC
Q psy10159 13 FYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPED 92 (492)
Q Consensus 13 ~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~ 92 (492)
.++||++|+++. .. |.+.|+++++++|++|+++|||||||||++++||... +....+..
T Consensus 3 ~mrIAlaQl~~~--~g---------D~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~----------Dl~~~~~~ 61 (700)
T PLN02339 3 LLKVATCNLNQW--AM---------DFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCE----------DHFLELDT 61 (700)
T ss_pred eEEEEEEeCCCC--CC---------CHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChH----------HHhhChhH
Confidence 699999999976 34 8999999999999999999999999999999999862 11111100
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc
Q psy10159 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL 172 (492)
Q Consensus 93 ~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~ 172 (492)
. ....+.++.|+..++++++.|++|++++ .++++||+++|+. +|+++++|+|+|||.
T Consensus 62 -~------~~~~~~L~~La~~a~~~~i~vvvG~p~~---------------~~~~lYN~a~vi~-~GkIlg~y~K~hLpn 118 (700)
T PLN02339 62 -V------THSWECLAEILVGDLTDGILCDIGMPVI---------------HGGVRYNCRVFCL-NRKILLIRPKMWLAN 118 (700)
T ss_pred -H------HHHHHHHHHHHhhcccCCeEEEEeeeEE---------------ECCeEEEEEEEEe-CCEEEEEEecccCCC
Confidence 0 1123556667666678899999999876 3347999999996 799999999999974
Q ss_pred c----CcccCCCCC---Cce----------------------EEEcCCCCeEEEEEeccCCChHHHHH-HHHhCCCcEEE
Q psy10159 173 E----YAFDTTPQP---EMI----------------------TFNTDFGVTFGTFTCFDILFPQPAVQ-LVKQKNITDFV 222 (492)
Q Consensus 173 e----~~~~~~~g~---e~~----------------------vf~t~fGvk~G~~IC~Di~Fpe~a~~-L~~~~Gad~iv 222 (492)
. +..++.+|+ +.. +|+++ |+|||+.||+|+|||++.+. ++. .||++|+
T Consensus 119 y~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~~~~~~-g~~iGv~ICeDlwfPe~p~~~lAl-~GAdII~ 196 (700)
T PLN02339 119 DGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFL-DTAVAAETCEELFTPQAPHIDLAL-NGVEIIS 196 (700)
T ss_pred CCccccccccccCccCCcceeeccccchhhccCCceeccCcceeecC-CeEEEEEEecccCCChHHHHHHHH-cCCeEEE
Confidence 2 233677764 222 33344 57999999999999999985 998 9999999
Q ss_pred EeCCCCCCCh--hhHHHHHHHHHhhhCCceEEEeCCcCCC---CcCCCccEEECCCCcEEEEcCCCC--CCeEEEEEeeC
Q psy10159 223 YTAAWMSELP--LLTAVTVHSSWAFSMDVNLLSSNYNNPA---QYGGGSGIYAGRQGIKVAVMPQYT--GSQLLISRVPK 295 (492)
Q Consensus 223 ~ptaw~~~~p--~l~~~~~~~~~A~en~v~vlaan~~~~~---~~~~Gssi~~~~~G~v~~~~~~~~--~~~llva~v~~ 295 (492)
+|+++..... ..++..+....+..++++ ++||..|.+ ..+.|+|++. ++|.++++.+.+. ++.+++++||+
T Consensus 197 n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN~~Ge~~~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl 274 (700)
T PLN02339 197 NGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYANQRGCDGGRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDL 274 (700)
T ss_pred ECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEcCCccCCCceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEeh
Confidence 9998532110 112222333344445777 588998744 3467999985 6999999987642 45799999998
Q ss_pred CC
Q psy10159 296 KS 297 (492)
Q Consensus 296 ~~ 297 (492)
+.
T Consensus 275 ~~ 276 (700)
T PLN02339 275 DA 276 (700)
T ss_pred HH
Confidence 64
No 42
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.95 E-value=1e-27 Score=224.98 Aligned_cols=174 Identities=28% Similarity=0.453 Sum_probs=136.2
Q ss_pred EEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCC--cccCcccccccCCCCCC
Q psy10159 15 TAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPK--RRADVKPYLITIPTPED 92 (492)
Q Consensus 15 ~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~--~r~~~~~~~~~vp~~~~ 92 (492)
|||++|+++..... +.++|++++.+++++|+++++|||||||++++||.... ... ..+ ......
T Consensus 1 ~VA~~Q~~~~~~~~---------~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~-~~~-~~~~~~--- 66 (186)
T PF00795_consen 1 RVALVQLNIDQSWG---------DPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDD-FAD-LDEFAE--- 66 (186)
T ss_dssp EEEEEEB-B-SSTT---------HHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSS-HHH-HHHHHB---
T ss_pred CEEEEECCccCccC---------CHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccc-cch-hhhhcc---
Confidence 79999998731023 89999999999999999999999999999999994300 000 000 000000
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC--
Q psy10159 93 HAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL-- 170 (492)
Q Consensus 93 ~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L-- 170 (492)
....+.++.|+.+|++++++|++|+.++ +++++||++++|+++|+++.+|+|.||
T Consensus 67 --------~~~~~~~~~l~~~a~~~~~~i~~G~~~~---------------~~~~~~N~~~~~~~~g~~~~~y~K~~lvp 123 (186)
T PF00795_consen 67 --------PLDGPYLERLAELAKENGITIVAGIPER---------------DDGGLYNSAVVIDPDGEILGRYRKIHLVP 123 (186)
T ss_dssp --------HSTSHHHHHHHHHHHHHTSEEEEEEEEE---------------ETTEEEEEEEEEETTSEEEEEEEGSSTCS
T ss_pred --------ccccHHHHHHHHHHHhcCCccccccccc---------------ccccccceeEEEEeeecccccccceeeec
Confidence 1126889999999999999999998888 456799999999999999999999999
Q ss_pred CccCc---ccCCCC-CCceEEEcC-C---CCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC
Q psy10159 171 FLEYA---FDTTPQ-PEMITFNTD-F---GVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA 226 (492)
Q Consensus 171 f~e~~---~~~~~g-~e~~vf~t~-f---Gvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta 226 (492)
|++.. ..+.+| ....+|+++ + |+|||++||||++||++++.+++ +||++|++|+|
T Consensus 124 f~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ICyd~~fp~~~~~~~~-~ga~il~~~sa 186 (186)
T PF00795_consen 124 FGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVLICYDLRFPELVRELAK-QGADILINPSA 186 (186)
T ss_dssp TTTTTTHHHHSBEESSESEEEEETETEETTEEEEEEEGGGGGSHHHHHHHHH-TTESEEEEEE-
T ss_pred cccccccceeeeeccceeeeeecceeeeccceEEEEEEcccCChHHHHHHHH-CCCCEEEeCCC
Confidence 44432 245554 677789887 6 78999999999999999999999 99999999986
No 43
>KOG0805|consensus
Probab=99.94 E-value=4.7e-26 Score=215.15 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=198.5
Q ss_pred CCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCC------------c
Q psy10159 9 SSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPK------------R 76 (492)
Q Consensus 9 ~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~------------~ 76 (492)
.+....+|++||.... .. +..+.|++.++.+.+|+..||.||||||.++.||+.+. .
T Consensus 13 d~~s~~~v~ivQ~~t~--~~---------dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eG 81 (337)
T KOG0805|consen 13 DSSSIVRVTIVQASTV--YN---------DTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEG 81 (337)
T ss_pred CcccceEEEEEEcccC--CC---------CCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhh
Confidence 3345789999999877 44 67788999999999999999999999999999997641 1
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEc
Q psy10159 77 RADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFD 156 (492)
Q Consensus 77 r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~ 156 (492)
|+....|.... . ...++..++|..+|+++++++|+|..|+ ++..+|-|.++|+
T Consensus 82 R~ef~kY~a~A----------I--ev~gpEv~~l~~la~~~~v~lv~G~iEr---------------eg~TLYCt~~f~~ 134 (337)
T KOG0805|consen 82 RDEFRKYHASA----------I--EVPGPEVERLAELAKKNNVYLVMGAIER---------------EGYTLYCTVLFFS 134 (337)
T ss_pred hHHHHHHHHHh----------h--cCCChHHHHHHHHhhcCCeEEEEEEEec---------------cccEEEEEEEEEC
Confidence 22222221110 0 2346789999999999999999999999 8889999999999
Q ss_pred CCCcEEeeeecCCCCccCc--ccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhh
Q psy10159 157 RQGQIIAKYRKFNLFLEYA--FDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLL 234 (492)
Q Consensus 157 ~~G~ii~rYrK~~Lf~e~~--~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l 234 (492)
|+|..++++||.....-++ +....|+.+.+|+|+.| |||..||++-+.|-....|.. +|+++.+.||+-.. .
T Consensus 135 p~g~~lGKHRKlmPTalERciWGqGDGSTiPV~dT~iG-KIG~AICWEN~MPl~R~alY~-KgieIycAPT~D~r----~ 208 (337)
T KOG0805|consen 135 PQGQFLGKHRKLMPTALERCIWGQGDGSTIPVYDTPIG-KIGAAICWENRMPLYRTALYA-KGIEIYCAPTADGR----K 208 (337)
T ss_pred CCccccccccccccchhhheeeccCCCcccceeecccc-hhceeeecccccHHHHHHHHh-cCcEEEeccCCCCc----H
Confidence 9999999999998876554 34556789999999998 999999999999999888888 99999999998432 2
Q ss_pred HHHHHHHHHhhhCCceEEEeCCcCC----------------------CCcCCCccEEECCCCcEEEEcCCCCCCeEEEEE
Q psy10159 235 TAVTVHSSWAFSMDVNLLSSNYNNP----------------------AQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISR 292 (492)
Q Consensus 235 ~~~~~~~~~A~en~v~vlaan~~~~----------------------~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~ 292 (492)
.|...+...|+|-+++||+|++--+ .....|.|.+++|-|.+++... ...++|+.|+
T Consensus 209 ~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~-~~~EgL~tad 287 (337)
T KOG0805|consen 209 EWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPN-FESEGLITAD 287 (337)
T ss_pred HHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceecCCC-cCccceEEEe
Confidence 4445667889999999999986321 1345688888999999999854 5689999999
Q ss_pred eeCCCC
Q psy10159 293 VPKKSS 298 (492)
Q Consensus 293 v~~~~~ 298 (492)
+|+..-
T Consensus 288 ldl~dI 293 (337)
T KOG0805|consen 288 LDLGDI 293 (337)
T ss_pred ccchhh
Confidence 998854
No 44
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.1e-24 Score=234.04 Aligned_cols=239 Identities=18% Similarity=0.221 Sum_probs=188.0
Q ss_pred CcCCCCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHh--cCCCcEEEcCCCCcCCCCCCCcccCccccc
Q psy10159 7 KSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNAS--NYDVDIIVFPECGLAGTPVPKRRADVKPYL 84 (492)
Q Consensus 7 s~~~~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~--~~gadIIVfPE~~l~g~~~~~~r~~~~~~~ 84 (492)
....++.++|+++|.+.. .. ..-..+....+++.+.+....+. .+++|+||+||.++. +..
T Consensus 221 ~~~~~~~~~V~lvQ~nI~--q~---lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p-~~~----------- 283 (518)
T COG0815 221 VPVGEPTLTVALVQGNIP--QD---LKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALP-FDL----------- 283 (518)
T ss_pred CCCCCCceEEEEecCCCc--cc---ccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccc-cch-----------
Confidence 344556799999999877 22 22223366777777777776655 488999999999986 221
Q ss_pred ccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 85 ITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 85 ~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
........++..++.+.+..+++|+..+.+ -+ +...+||+.++++++|+++.+
T Consensus 284 ----------------~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~---------~~--~~~~yyNSv~~~~~~~~~~~~ 336 (518)
T COG0815 284 ----------------TRHPDALARLAEALQRVGAPLLIGTDVDGP---------AP--GGGIYYNSVLVLDPGGEGVYR 336 (518)
T ss_pred ----------------hhcchHHHHHHHHHHhcCCcEEEecccccc---------CC--CCcceeeEEEEecCCCCcccc
Confidence 112233677888888898999999433210 00 222689999999999999999
Q ss_pred eecCCC--CccCc-----------------ccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeC
Q psy10159 165 YRKFNL--FLEYA-----------------FDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTA 225 (492)
Q Consensus 165 YrK~~L--f~e~~-----------------~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pt 225 (492)
|+|.|| |+|+- .++.+|+...++.++.|.||++.||||+.||+..|..++ +|+|+|+++|
T Consensus 337 ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~-qga~~Lin~S 415 (518)
T COG0815 337 YDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASAR-QGAELLLNLS 415 (518)
T ss_pred ccceeeeCCccccchHHHHHHHhhhhccccccccCCCCCcceecCCCceeeceeeehhhchHHHHHhhc-CCCcEEEEcc
Confidence 999999 67751 145568888999999888999999999999999999998 9999999999
Q ss_pred C--CCCCC-hhhHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCC
Q psy10159 226 A--WMSEL-PLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSS 298 (492)
Q Consensus 226 a--w~~~~-p~l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~ 298 (492)
| |++.. ...++.++.+.||+|++.++++|. ++|.|.++||+|++++..+.+ +.+.+.++|+....
T Consensus 416 NDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAt-------NtGiSavIdp~Gri~~~l~~~-~~~~l~~~v~~~~~ 483 (518)
T COG0815 416 NDAWFGGSWGPYQHFQQARVRAVELGRPLVRAT-------NTGISAVIDPRGRILAQLPYF-TRGVLDATVPLKTG 483 (518)
T ss_pred cccccCCCcchHHHHHHHHHHHHhcCCcEEEEc-------CCcceEEECCCCCEEeecCCC-CcceeeeeecccCC
Confidence 7 98864 344566778999999999999995 889999999999999999865 78999999998754
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.93 E-value=1.4e-24 Score=228.92 Aligned_cols=194 Identities=18% Similarity=0.276 Sum_probs=154.3
Q ss_pred eEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCC
Q psy10159 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDH 93 (492)
Q Consensus 14 ~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~ 93 (492)
.+|++||.+.. .. .+. ..+..+.|++++.+++++|+++++|+|||||.+++.+..
T Consensus 195 ~~V~lVQ~ni~--q~--~Kw-~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~-------------------- 249 (418)
T PRK12291 195 VNIELVNTNIP--QD--LKW-DKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALN-------------------- 249 (418)
T ss_pred CEEEEEeCCCC--cc--ccc-ChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchh--------------------
Confidence 49999999977 22 122 223677899999999999988899999999998754321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC--C
Q psy10159 94 AIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL--F 171 (492)
Q Consensus 94 ~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L--f 171 (492)
...+.+++|++++ .++.|++|..++ +++++||+.+++++ |+ +.+|+|.|| |
T Consensus 250 --------~~~~~~~~l~~~~--~~~~ii~G~~~~---------------~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPF 302 (418)
T PRK12291 250 --------NSPILLDKLKELS--HKITIITGALRV---------------EDGHIYNSTYIFSK-GN-VQIADKVILVPF 302 (418)
T ss_pred --------hCHHHHHHHHHhc--cCCcEEEeeeec---------------cCCceEEEEEEECC-CC-cceecccCCCCC
Confidence 1234677787775 578999998776 33479999999985 87 789999999 5
Q ss_pred ccC------------------cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CCCCC
Q psy10159 172 LEY------------------AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WMSEL 231 (492)
Q Consensus 172 ~e~------------------~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~~~~ 231 (492)
+|+ ..++++|++..+++++ |+|+|++||||..|||..+ +|+|+++++|+ |+...
T Consensus 303 GEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~~~~~-g~~ig~lICYE~~Fpel~r-----~ga~~Lv~iSNdaWfg~s 376 (418)
T PRK12291 303 GEEIPLPKFFKKPINKLFFGGASDFSKASKFSDFTLD-GVKFRNAICYEATSEELYE-----GNPKIVIAISNNAWFVPS 376 (418)
T ss_pred cccCccHHHHHhhhHHHhccCcccCCCCCCCcceeeC-CeEEEEEEeeeecchHhhc-----cCCCEEEEecccccCCCC
Confidence 552 1157889999999998 7899999999999998876 79999999997 87654
Q ss_pred --hhhHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCC
Q psy10159 232 --PLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQ 273 (492)
Q Consensus 232 --p~l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~ 273 (492)
|+ .+.+..+.||+|||+++++|. ++|.|.++||+
T Consensus 377 ~~p~-~~~~~~r~RAiE~g~pvvrat-------NtGiSavIdp~ 412 (418)
T PRK12291 377 IEPT-LQKLLLKYYARKYGKTIYHSA-------NGSPSYIITPK 412 (418)
T ss_pred hhHH-HHHHHHHHHHHHhCCcEEEEc-------CCceeEEECcc
Confidence 44 344566788999999999996 88999999986
No 46
>KOG0808|consensus
Probab=99.91 E-value=1.2e-23 Score=200.17 Aligned_cols=258 Identities=18% Similarity=0.153 Sum_probs=205.4
Q ss_pred CCceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCC
Q psy10159 11 REFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTP 90 (492)
Q Consensus 11 ~~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~ 90 (492)
..-++||++|-.+. .|. .+...++.++--+++..+|+.|+..|+.||.|-|.+..+|.+. +|+. .||.++.
T Consensus 71 pr~vrvgliqn~i~---lpt-tapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafc-trer-lpwtefa--- 141 (387)
T KOG0808|consen 71 PRVVRVGLIQNSIA---LPT-TAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFC-TRER-LPWTEFA--- 141 (387)
T ss_pred CcEEEEeeeccccc---CCC-CCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhh-cccc-Cchhhhc---
Confidence 45689999999876 222 2334557888889999999999999999999999999999886 6653 2344432
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCC
Q psy10159 91 EDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNL 170 (492)
Q Consensus 91 ~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~L 170 (492)
++...++..+.|+++|++++|.||--+.|++. + .+.-++||+|||+.+|.+|++.||.|+
T Consensus 142 --------esv~~gptt~flqklakkhdmvivspilerd~-----------e-hgdvlwntavvisn~g~vigk~rknhi 201 (387)
T KOG0808|consen 142 --------ESVDTGPTTKFLQKLAKKHDMVIVSPILERDI-----------E-HGDVLWNTAVVISNNGNVIGKHRKNHI 201 (387)
T ss_pred --------cccccCchHHHHHHHHhhCCeEEEehhhhccc-----------c-cCceeeeeeEEEccCCceecccccccC
Confidence 21345788999999999999999999999852 1 566799999999999999999999999
Q ss_pred C-----ccCcccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCCCCCCChhhHHHHHHHHHhh
Q psy10159 171 F-----LEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELPLLTAVTVHSSWAF 245 (492)
Q Consensus 171 f-----~e~~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~ptaw~~~~p~l~~~~~~~~~A~ 245 (492)
. .|..++........+|+|.|| |||+-|||--..|.-+..+.. .|+++|++|++-...+....|-...+.-|+
T Consensus 202 prvgdfnestyymeg~lghpvfet~fg-riavnicygrhhplnwlmy~l-ngaeiifnpsatvgalseplwpiearnaai 279 (387)
T KOG0808|consen 202 PRVGDFNESTYYMEGDLGHPVFETVFG-RIAVNICYGRHHPLNWLMYGL-NGAEIIFNPSATVGALSEPLWPIEARNAAI 279 (387)
T ss_pred CcccccCcceeEeecCCCCceeeeecc-eEEEEeeccCCCchhhhhhhc-cCceEEECCccccccccCccCchhhhhhhh
Confidence 4 444444444568899999999 999999999999999999999 999999999996554422122334566799
Q ss_pred hCCceEEEeCCcCCC------------------CcCCCccEEECCCCcEEEEcCCCCCCeEEEEEeeCCCCCc
Q psy10159 246 SMDVNLLSSNYNNPA------------------QYGGGSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSSVV 300 (492)
Q Consensus 246 en~v~vlaan~~~~~------------------~~~~Gssi~~~~~G~v~~~~~~~~~~~llva~v~~~~~~~ 300 (492)
+|.++..+.|++|.+ ..+.|||-+..|++.-.-..... .+++|++++|+.-|+|
T Consensus 280 anh~ft~~inrvgtevfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~-rdgllia~ldlnlcrq 351 (387)
T KOG0808|consen 280 ANHYFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRY-RDGLLIADLDLNLCRQ 351 (387)
T ss_pred hhceEEEeecccccccCCCcccCCCCCcccccccccccceeeecCCCCCCcccccc-ccceEEeecchHHHHH
Confidence 999999999998853 35789999999998665555444 6899999999998843
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.83 E-value=9.8e-20 Score=189.88 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcE
Q psy10159 41 SNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMY 120 (492)
Q Consensus 41 ~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~ 120 (492)
++.+++.+.+++|+++++|+|||||.++++|... .. +.+...++++++.
T Consensus 206 ~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~---------------------------~~----~~~~~~l~~~~i~ 254 (388)
T PRK13825 206 ERRRELIATVRAAAAAGARVVVLPESALGFWTPT---------------------------TE----RLWRESLRGSDVT 254 (388)
T ss_pred HHHHHHHHHHHhhcccCCCEEEccCccccccccc---------------------------cc----HHHHHHHHhCCCe
Confidence 5556677778888888999999999999877430 00 1234556899999
Q ss_pred EEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCc--cC---------cccCCCC-CCceEEE
Q psy10159 121 VVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFL--EY---------AFDTTPQ-PEMITFN 188 (492)
Q Consensus 121 IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~--e~---------~~~~~~g-~e~~vf~ 188 (492)
|++|..++ +++++||+.++|+++|. +.+|+|+||+. |. ...+.+| .+..+|+
T Consensus 255 II~G~~~~---------------~~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~ 318 (388)
T PRK13825 255 VIAGAAVV---------------DPGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVE 318 (388)
T ss_pred EEEEeeec---------------CCCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCcee
Confidence 99998877 33568999999999986 45999999853 31 1133444 2335888
Q ss_pred cCCCCeEEEEEeccCCChHHHHHHHHhCCCcEEEEeCC--CCCCC--hhhHHHHHHHHHhhhCCceEEEeC
Q psy10159 189 TDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAA--WMSEL--PLLTAVTVHSSWAFSMDVNLLSSN 255 (492)
Q Consensus 189 t~fGvk~G~~IC~Di~Fpe~a~~L~~~~Gad~iv~pta--w~~~~--p~l~~~~~~~~~A~en~v~vlaan 255 (492)
++ |+|+|++||||..|+.+.+...+ +|+|+|++|++ |+... |..+ .+..++||+|+|++++.|.
T Consensus 319 l~-g~rvg~lICYE~~F~~pel~~~~-~GadlLv~~SNd~Wf~~s~~p~~q-~~~~~~rA~e~g~plvrA~ 386 (388)
T PRK13825 319 ID-GRRAAPLICYEQLLVWPVLQSML-HSPDVIVAVGNGWWTKGTSIVAIQ-RASAEAWARLFGVPLVRAF 386 (388)
T ss_pred eC-CeEEEEEEeeeecCcHHHHHhhc-cCCCEEEEecCchhcCCCcHHHHH-HHHHHHHHHHhCCCEEEec
Confidence 88 78999999999999555554455 99999999997 88754 4433 4678899999999999874
No 48
>KOG2303|consensus
Probab=99.01 E-value=7e-10 Score=114.84 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=157.5
Q ss_pred CceEEEEEeeeccCCcCccchhhHHHhHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCC
Q psy10159 12 EFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPE 91 (492)
Q Consensus 12 ~~~~aAvvQ~~~~~~~~~~~~~~~~~~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~ 91 (492)
..++||..+.+.- . . |.+.|++++.+-|++|++.||.+-+-||+-++||... +..-++.
T Consensus 3 r~vtvAtc~lNqW---A---l-----DFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~----------DHf~E~D 61 (706)
T KOG2303|consen 3 RKVTVATCTLNQW---A---L-----DFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCE----------DHFLESD 61 (706)
T ss_pred ceEEEEEechhhh---h---h-----hccccHHHHHHHHHHHHhcCCeeecCCceeecCCChH----------Hhhccch
Confidence 4578899888765 2 2 8999999999999999999999999999999999982 2221111
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCC
Q psy10159 92 DHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF 171 (492)
Q Consensus 92 ~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf 171 (492)
. + ...-+.+..|..--.-.++.+.+||+.. .+.-.||..+++- +|+|+....|+-|-
T Consensus 62 t----~---~HswE~l~~l~~~~~~~~il~diGmPv~---------------hr~~ryNCrv~~~-n~kil~IRpKm~la 118 (706)
T KOG2303|consen 62 T----L---LHSWEMLAELVESPVTQDILCDIGMPVM---------------HRNVRYNCRVLFL-NRKILLIRPKMWLA 118 (706)
T ss_pred H----H---HHHHHHHHHHHcCCCCCCeeEecCCchh---------------hhhhhhccceeec-CCeEEEEcccceec
Confidence 0 0 0111333333332223578999999988 5567899999987 99999999999983
Q ss_pred -----ccCcccCCCCCCceEEE----------------cCCC--------CeEEEEEeccCCChH-HHHHHHHhCCCcEE
Q psy10159 172 -----LEYAFDTTPQPEMITFN----------------TDFG--------VTFGTFTCFDILFPQ-PAVQLVKQKNITDF 221 (492)
Q Consensus 172 -----~e~~~~~~~g~e~~vf~----------------t~fG--------vk~G~~IC~Di~Fpe-~a~~L~~~~Gad~i 221 (492)
.|-+ +|++..+..+++ .||| .-+|.-||.|+|-|. |-.+++. .|++++
T Consensus 119 nDgnyRE~R-wFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal-~GVei~ 196 (706)
T KOG2303|consen 119 NDGNYRESR-WFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMAL-DGVEII 196 (706)
T ss_pred cCCCchhhc-cccccccccccceeeccHHHHHHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhh-CceEEE
Confidence 3333 333332211110 1232 237899999999875 4455777 999999
Q ss_pred EEeCCCCCCChhh-HHH-HHHHHHhhhCCceEEEeCCcC---CCCcCCCccEEECCCCcEEEEcCCC--CCCeEEEEEee
Q psy10159 222 VYTAAWMSELPLL-TAV-TVHSSWAFSMDVNLLSSNYNN---PAQYGGGSGIYAGRQGIKVAVMPQY--TGSQLLISRVP 294 (492)
Q Consensus 222 v~ptaw~~~~p~l-~~~-~~~~~~A~en~v~vlaan~~~---~~~~~~Gssi~~~~~G~v~~~~~~~--~~~~llva~v~ 294 (492)
++.+.--.++--+ +.. .++-+-+..-|+++. ||..| ....+.|.++ +.-+|.+++....+ +.-.++.|.||
T Consensus 197 ~NaSGShh~LrK~~~r~~li~~at~k~GGvYly-aNqrGCDG~RlYydGca~-Ia~NG~vlAqg~QFsl~DveVv~atvD 274 (706)
T KOG2303|consen 197 TNASGSHHELRKLNTRVDLILNATSKCGGVYLY-ANQRGCDGDRLYYDGCAM-IAMNGSVLAQGSQFSLDDVEVVTATVD 274 (706)
T ss_pred ecCCccHHHHhhhhhhhHHHhcchhhcceEEEe-eccCCCCCceeEecchhh-eeecceeeeecccccccceEEEEEEec
Confidence 9887632211100 111 123344555567654 46543 4567888877 44789999987544 35688999999
Q ss_pred CCCC
Q psy10159 295 KKSS 298 (492)
Q Consensus 295 ~~~~ 298 (492)
+++-
T Consensus 275 le~v 278 (706)
T KOG2303|consen 275 LEDV 278 (706)
T ss_pred HHHH
Confidence 8753
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=86.73 E-value=4 Score=41.25 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 106 ILTMLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 106 ~l~~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
....++..|.+++++|+. |..-.. ++..++=...+++|+|++++.
T Consensus 187 w~~~~~aRA~En~~~vv~aN~~G~~--------------~~~~~~G~S~ivdP~G~ila~ 232 (291)
T cd07565 187 WIITNKANAWCNLMYTASVNLAGFD--------------GVFSYFGESMIVNFDGRTLGE 232 (291)
T ss_pred HHHHHHHHHHhcCcEEEEecccccC--------------CCceeeeeeEEECCCCCEEEe
Confidence 345567888899999985 432110 333455567788999998765
No 50
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=83.25 E-value=6.7 Score=40.79 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEE-ccc
Q psy10159 48 RIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVV-NLF 126 (492)
Q Consensus 48 ~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~-g~~ 126 (492)
++.+..+.+|||||+-|- +|..+ ........++..|.++++|||. |..
T Consensus 173 E~~R~la~~GAelii~ps----a~~~~---------------------------~~~~~~~~~rarA~eN~~yVv~aN~~ 221 (345)
T PRK13286 173 EIWRDCAMKGAELIVRCQ----GYMYP---------------------------AKEQQVLVAKAMAWANNCYVAVANAA 221 (345)
T ss_pred HHHHHHHHcCCeEEEEcc----ccCCC---------------------------chHHHHHHHHHHHHHCCCEEEEEecc
Confidence 355666778999999873 34220 0112344567788899999887 332
Q ss_pred ccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 127 EIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 127 ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
-.. ++..++=...+++|+|++++.
T Consensus 222 G~~--------------~~~~~~G~S~Ivdp~G~vla~ 245 (345)
T PRK13286 222 GFD--------------GVYSYFGHSAIIGFDGRTLGE 245 (345)
T ss_pred ccc--------------CCceeeeeEEEECCCCcEEEe
Confidence 221 222344567789999998765
No 51
>KOG0806|consensus
Probab=80.28 E-value=1.8 Score=43.75 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhCCceEEEeCCcCCC---CcCCC-ccEEECCCCcEEEEcCCCCCCeEEEEEeeCCC
Q psy10159 235 TAVTVHSSWAFSMDVNLLSSNYNNPA---QYGGG-SGIYAGRQGIKVAVMPQYTGSQLLISRVPKKS 297 (492)
Q Consensus 235 ~~~~~~~~~A~en~v~vlaan~~~~~---~~~~G-ssi~~~~~G~v~~~~~~~~~~~llva~v~~~~ 297 (492)
+|..++++||..|.+++.+++..... ....| .+++.+|.|++++.... ++.+++++++.+.
T Consensus 208 hw~~~~~~~a~~n~~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~--~~e~~~a~~d~~~ 272 (298)
T KOG0806|consen 208 HWALLMRARANDNAANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVE--KEEIIYADVDPSA 272 (298)
T ss_pred HHHHHHhCCcccceeeeeccCcCcCCceeeecCCcceeecCCcceEeeeccC--CCccccccCCHHH
Confidence 44567788899999999888887654 23445 78888999988888643 3448888887664
No 52
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.11 E-value=7.7 Score=37.81 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEE-cccc
Q psy10159 49 IIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVV-NLFE 127 (492)
Q Consensus 49 ~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~-g~~e 127 (492)
..+..+.+|||||+.|=. |.. .........+...|.+++++++. |..-
T Consensus 151 ~~r~~~~~ga~ll~~ps~----~~~---------------------------~~~~~~~~~~~~rA~en~~~vv~~n~~G 199 (253)
T cd07583 151 LFRKLALEGAEILFVPAE----WPA---------------------------ARIEHWRTLLRARAIENQAFVVACNRVG 199 (253)
T ss_pred HHHHHHHcCCcEEEECCC----CCC---------------------------CchHHHHHHHHHHHHHhCCEEEEEcCcc
Confidence 455666789999998833 221 01122233456788999999875 3221
Q ss_pred cccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 128 IVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 128 k~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
.. .+..++=...+++|+|++++.
T Consensus 200 ~~--------------~~~~~~G~S~ii~p~G~il~~ 222 (253)
T cd07583 200 TD--------------GGNEFGGHSMVIDPWGEVLAE 222 (253)
T ss_pred cC--------------CCceecceeEEECCCchhhee
Confidence 10 222333455678999998765
No 53
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.34 E-value=11 Score=37.02 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCcEEEEc-ccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeee
Q psy10159 105 KILTMLSKAAKDSNMYVVVN-LFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKY 165 (492)
Q Consensus 105 ~~l~~Ls~lAr~~~i~IV~g-~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rY 165 (492)
.....++..|.+++++++.. ..-.. ++..+.=...+++|+|++++.-
T Consensus 177 ~~~~~~~~rA~e~~~~vv~~n~~g~~--------------~~~~~~G~S~i~~p~G~v~~~~ 224 (261)
T cd07585 177 WWMRWLPARAYDNGVFVAACNGVGRD--------------GGEVFPGGAMILDPYGRVLAET 224 (261)
T ss_pred HHHHHhHHHHhhcCeEEEEecccccC--------------CCceecceEEEECCCCCEEecc
Confidence 33445677888999998863 22110 2112223567889999988653
No 54
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.00 E-value=11 Score=36.90 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 109 MLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 109 ~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
..+.-|.++++||+. |..-.. ++..++=...+++|+|++++.
T Consensus 183 ~~~~rA~En~~~vv~~n~~g~~--------------~~~~~~G~S~ii~p~G~il~~ 225 (258)
T cd07584 183 NLPARALENTVFVAAVNRVGNE--------------GDLVLFGKSKILNPRGQVLAE 225 (258)
T ss_pred HHHHHHHhCCcEEEEECccccC--------------CCceecceeEEECCCCceeee
Confidence 345678899999986 321110 222222356788999998754
No 55
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=78.72 E-value=7.2 Score=38.21 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcc-cc
Q psy10159 49 IIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNL-FE 127 (492)
Q Consensus 49 ~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~-~e 127 (492)
..+.++.+|||||+.|=. +... .........++..|.+++++|+... .-
T Consensus 161 ~~r~~~~~gadli~~p~~----~~~~--------------------------~~~~~~~~~~~~rA~e~~~~vv~~n~~G 210 (265)
T cd07572 161 LARALARQGADILTVPAA----FTMT--------------------------TGPAHWELLLRARAIENQCYVVAAAQAG 210 (265)
T ss_pred HHHHHHHCCCCEEEECCC----CCCC--------------------------cchHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 455666789999999832 2210 0112233445677889999988752 11
Q ss_pred cccCCCCCCCCcccCCCCCe-eEEEEEEEcCCCcEEee
Q psy10159 128 IVACPSDDQSSICRGQDRNY-HYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 128 k~~c~~~~~~~~cp~~~~~~-~yNT~vvf~~~G~ii~r 164 (492)
.. ++.. .+=...+++|+|+++++
T Consensus 211 ~~--------------~~~~~~~G~S~i~~p~G~il~~ 234 (265)
T cd07572 211 DH--------------EAGRETYGHSMIVDPWGEVLAE 234 (265)
T ss_pred cC--------------CCCCeecceeEEECCCcHHHhh
Confidence 10 2122 23356778999987644
No 56
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=75.48 E-value=11 Score=37.00 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 107 LTMLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 107 l~~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
...++..|.+++++|+. |..... ++..+.=...+++|+|++++.
T Consensus 183 ~~~~~~rA~en~~~vv~~n~~g~~--------------~~~~~~G~S~ii~p~G~vl~~ 227 (261)
T cd07570 183 RELVSSRSARTGLPYVYVNQVGGQ--------------DDLVFDGGSFIADNDGELLAE 227 (261)
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCC--------------ceEEEECceEEEcCCCCEEEe
Confidence 44577889999999887 332210 222223346789999998865
No 57
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=72.82 E-value=22 Score=35.04 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 109 MLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 109 ~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
.+...|.++++|||. |..-.. ++..++=...+++|+|++++.
T Consensus 187 ~~~arA~en~~~vv~~n~~G~~--------------~~~~~~G~S~ii~p~G~~~~~ 229 (268)
T cd07580 187 LAMAAAHSNGLFIACADRVGTE--------------RGQPFIGQSLIVGPDGWPLAG 229 (268)
T ss_pred hhHHHHhhCCcEEEEEeeeeec--------------cCceEeeeeEEECCCCCeeee
Confidence 345668899999976 532221 222334466899999998644
No 58
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=71.89 E-value=5.9 Score=34.18 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=51.4
Q ss_pred CCeeEEEEEEEcCCCcEEeeeecCCC----------CccC-cccCCCCCCceEEEcCCCCeEEEEEeccCCChHHHHHHH
Q psy10159 145 RNYHYNTNLVFDRQGQIIAKYRKFNL----------FLEY-AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLV 213 (492)
Q Consensus 145 ~~~~yNT~vvf~~~G~ii~rYrK~~L----------f~e~-~~~~~~g~e~~vf~t~fGvk~G~~IC~Di~Fpe~a~~L~ 213 (492)
+++-|+..+++.++|++ .+.+|-.- +.|+ ...+..+++..++-|. -.|++-- .+-++.+.
T Consensus 15 ~Gk~f~~DIvi~~dG~v-~rr~K~lskrK~GTSHkl~~eEle~~lee~~E~ivvGTG---~~G~l~l-----~~ea~e~~ 85 (121)
T COG1504 15 GGKDFEHDIVIRPDGKV-ERREKELSKRKYGTSHKLALEELEELLEEGPEVIVVGTG---QSGMLEL-----SEEAREFF 85 (121)
T ss_pred CCEeccccEEEecCCce-ehhhhhhhhhhcCcccccCHHHHHHHHhcCCcEEEEecC---ceeEEEe-----CHHHHHHH
Confidence 46889999999999985 55555432 2121 2245578888888873 4555432 34577777
Q ss_pred HhCCCcEEEEeCCC
Q psy10159 214 KQKNITDFVYTAAW 227 (492)
Q Consensus 214 ~~~Gad~iv~ptaw 227 (492)
++.|+++++.||-|
T Consensus 86 r~k~~~vi~~pT~E 99 (121)
T COG1504 86 RKKGCEVIELPTPE 99 (121)
T ss_pred HhcCCeEEEeCCHH
Confidence 77999999999975
No 59
>PLN02798 nitrilase
Probab=70.75 E-value=19 Score=36.09 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCcEEEEc--ccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 107 LTMLSKAAKDSNMYVVVN--LFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 107 l~~Ls~lAr~~~i~IV~g--~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
...++.-|.++++||+.. ..+-. ++...+=...+++|+|+++++
T Consensus 200 ~~~~~~rAien~~~vv~an~~G~~~--------------~~~~~~G~S~ii~p~G~il~~ 245 (286)
T PLN02798 200 EVLLRARAIETQCYVIAAAQAGKHN--------------EKRESYGHALIIDPWGTVVAR 245 (286)
T ss_pred HHHHHHHHHHhCCEEEEecccCcCC--------------CCceeeeeeEEECCCccchhh
Confidence 344677888999999883 22110 223344567788999998755
No 60
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.56 E-value=31 Score=33.87 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCcEEEEc-ccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 105 KILTMLSKAAKDSNMYVVVN-LFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 105 ~~l~~Ls~lAr~~~i~IV~g-~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
.....+...|.+++++||.- ..-.. ++..++=...+++|+|++++.
T Consensus 183 ~~~~~~~~rA~e~~~~vv~an~~G~~--------------~~~~~~G~S~ii~p~G~il~~ 229 (269)
T cd07586 183 NWETLLKFYAMMNGVYVVFANRVGVE--------------DGVYFWGGSRVVDPDGEVVAE 229 (269)
T ss_pred HHHHHHHHHHHHhCCeEEEEeeecCc--------------CCceEeCCcEEECCCCCEEEe
Confidence 34456677799999998873 21110 333444556789999998864
No 61
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=65.49 E-value=22 Score=36.25 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCC-CcEEeeee
Q psy10159 107 LTMLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQ-GQIIAKYR 166 (492)
Q Consensus 107 l~~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~-G~ii~rYr 166 (492)
...+...|.+|++||++ |..-. . ..+-...|++|. |++++...
T Consensus 217 ~~l~~arA~eN~~~vi~~N~~g~---------------~--~~~G~S~iv~P~~G~v~a~~~ 261 (299)
T cd07567 217 VQIQQAWAYANGVNLLAANYNNP---------------S--AGMTGSGIYAGRSGALVYHYD 261 (299)
T ss_pred HHHHHHHHHHcCceEEEecCCCC---------------c--CccccceEEcCCCCcEEEEec
Confidence 34567789999999987 32111 1 123456788999 99998753
No 62
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=65.18 E-value=28 Score=33.73 Aligned_cols=71 Identities=8% Similarity=0.083 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCChhh------------HHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCc
Q psy10159 208 PAVQLVKQKNITDFVYTAAWMSELPLL------------TAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGI 275 (492)
Q Consensus 208 ~a~~L~~~~Gad~iv~ptaw~~~~p~l------------~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~ 275 (492)
..++.++ +|+|+||+|=.|....+.. ...+..+..|.++++.++.--.........=+.++++++|+
T Consensus 24 ~i~~a~~-~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~yNs~~~i~~~G~ 102 (254)
T cd07576 24 AAARAAA-AGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPERAGGAVYNAAVLIDEDGT 102 (254)
T ss_pred HHHHHHH-cCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccccCCCceEEEEEEECCCCC
Confidence 3444455 8999999998765432210 12233455688899988765321111111224556788887
Q ss_pred EEEE
Q psy10159 276 KVAV 279 (492)
Q Consensus 276 v~~~ 279 (492)
++..
T Consensus 103 i~~~ 106 (254)
T cd07576 103 VLAN 106 (254)
T ss_pred EeeE
Confidence 6654
No 63
>PRK13287 amiF formamidase; Provisional
Probab=64.59 E-value=38 Score=34.97 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHhCCcEEEEc-ccccccCCCCCCCCcccCCCC-CeeEEEEEEEcCCCcEEee
Q psy10159 110 LSKAAKDSNMYVVVN-LFEIVACPSDDQSSICRGQDR-NYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 110 Ls~lAr~~~i~IV~g-~~ek~~c~~~~~~~~cp~~~~-~~~yNT~vvf~~~G~ii~r 164 (492)
.+..|.+|+++++.- ..-. ++ ..++=...+++|+|+++++
T Consensus 203 ~~arA~en~~~vv~an~~G~---------------~~~~~~~G~S~Iidp~G~vl~~ 244 (333)
T PRK13287 203 NRSNAWQNLMYTASVNLAGY---------------DGVFYYFGEGQVCNFDGTTLVQ 244 (333)
T ss_pred HHHHHHhCCcEEEEEecccc---------------CCCeeeeeeeEEECCCCcEEEe
Confidence 345677899998773 2111 22 2234456788999998765
No 64
>PRK13981 NAD synthetase; Provisional
Probab=64.53 E-value=26 Score=38.63 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 107 LTMLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 107 l~~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
...++..|.++++++|. |..-.. ++..+.-...+++|+|++++.
T Consensus 182 ~~~~~~rA~En~~~vv~aN~vG~~--------------~~~~f~G~S~i~dp~G~il~~ 226 (540)
T PRK13981 182 EAVLRARVRETGLPLVYLNQVGGQ--------------DELVFDGASFVLNADGELAAR 226 (540)
T ss_pred HHHHHHHHHHhCCeEEEEecccCC--------------CceEEeCceEEECCCCCEeee
Confidence 45678899999999877 432210 222333567788999998765
No 65
>KOG0807|consensus
Probab=63.62 E-value=9.9 Score=37.40 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred hcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcc-cccccCC
Q psy10159 54 SNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNL-FEIVACP 132 (492)
Q Consensus 54 ~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~-~ek~~c~ 132 (492)
.+.||+|+-||-.+.. . .....+---|+.-|.+.++|||+.. .-+..
T Consensus 183 R~~gA~iLtyPSAFT~--~----------------------------TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn-- 230 (295)
T KOG0807|consen 183 RKMGAQILTYPSAFTI--K----------------------------TGEAHWEILLRARAIETQCYVVAAAQVGKHN-- 230 (295)
T ss_pred HHcCCcEEeccchhhh--c----------------------------ccHHHHHHHHHHHHhhcceEEEehhhccccc--
Confidence 4679999999976532 1 1223444556788889999999852 22210
Q ss_pred CCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeee
Q psy10159 133 SDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYR 166 (492)
Q Consensus 133 ~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYr 166 (492)
..+.-|--..|+||=|+||+++.
T Consensus 231 -----------eKR~SyGhSMiVDPWGtVva~~s 253 (295)
T KOG0807|consen 231 -----------EKRESYGHSMIVDPWGTVVARCS 253 (295)
T ss_pred -----------chhhccCcceEEcchhhhheecC
Confidence 23445777889999999999975
No 66
>PLN02504 nitrilase
Probab=62.89 E-value=27 Score=36.24 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=40.4
Q ss_pred HHHhCCCcEEEEeCCCCCCChhh---H---------------------------HHHHHHHHhhhCCceEEEeCCcCCCC
Q psy10159 212 LVKQKNITDFVYTAAWMSELPLL---T---------------------------AVTVHSSWAFSMDVNLLSSNYNNPAQ 261 (492)
Q Consensus 212 L~~~~Gad~iv~ptaw~~~~p~l---~---------------------------~~~~~~~~A~en~v~vlaan~~~~~~ 261 (492)
.++ .|+|+|++|=.|....|.. . ..+..+..|.+++++++.........
T Consensus 53 Aa~-~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~ 131 (346)
T PLN02504 53 AAA-YGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIERDGY 131 (346)
T ss_pred HHH-CCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeecCCC
Confidence 344 8999999998876544320 0 02233456788999887643211111
Q ss_pred cCCCccEEECCCCcEEEEc
Q psy10159 262 YGGGSGIYAGRQGIKVAVM 280 (492)
Q Consensus 262 ~~~Gssi~~~~~G~v~~~~ 280 (492)
...-+.++++++|.++...
T Consensus 132 ~~yNsa~~i~~~G~i~~~y 150 (346)
T PLN02504 132 TLYCTVLFFDPQGQYLGKH 150 (346)
T ss_pred ceEEEEEEECCCCCEEeEE
Confidence 1234566788899877653
No 67
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=61.85 E-value=31 Score=34.05 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCh-------hh---------HHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEEC
Q psy10159 208 PAVQLVKQKNITDFVYTAAWMSELP-------LL---------TAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAG 271 (492)
Q Consensus 208 ~a~~L~~~~Gad~iv~ptaw~~~~p-------~l---------~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~ 271 (492)
..++.++ +|+|+|++|=.|..... ++ ...+..+..|.+++++++..-.........=+.++++
T Consensus 24 ~i~~A~~-~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~ 102 (279)
T TIGR03381 24 LVREAAA-RGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMID 102 (279)
T ss_pred HHHHHHH-CCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeeeecCCCceEEeEEEEC
Confidence 3444455 89999999987543321 10 1223445678889998875321111111222456778
Q ss_pred CCCcEEEEc
Q psy10159 272 RQGIKVAVM 280 (492)
Q Consensus 272 ~~G~v~~~~ 280 (492)
++|.++...
T Consensus 103 ~~G~i~~~y 111 (279)
T TIGR03381 103 ADGSVLGVY 111 (279)
T ss_pred CCCCEEEEE
Confidence 888877553
No 68
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=60.17 E-value=50 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeE-EEEEEEcCCCcEEee
Q psy10159 109 MLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHY-NTNLVFDRQGQIIAK 164 (492)
Q Consensus 109 ~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~y-NT~vvf~~~G~ii~r 164 (492)
.++..|.++++||+. |..-... .+ .+...| =-..+++|+|++++.
T Consensus 211 ~~~arA~en~~~vv~aN~~G~~~-------~~----~~~~~~~G~S~ivdp~G~vla~ 257 (294)
T cd07582 211 ANRARALENLAYVVSANSGGIYG-------SP----YPADSFGGGSMIVDYKGRVLAE 257 (294)
T ss_pred HHHHHHHhcCCEEEEecccccCc-------cc----ccCceecceeEEECCCCCEEEe
Confidence 456788899999985 4221110 00 001223 356677999998865
No 69
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=60.11 E-value=37 Score=33.35 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 106 ILTMLSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 106 ~l~~Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
+...++.-|.++++||+. |..-... ++..++=...+++|+|++++.
T Consensus 173 ~~~~~~aRA~En~~~vv~~n~~G~~~-------------~~~~~~G~S~ivdP~G~vl~~ 219 (256)
T PRK10438 173 WQTLLTARAIENQAYVAGCNRVGSDG-------------NGHHYRGDSRIINPQGEIIAT 219 (256)
T ss_pred HHHHHHHHHHhcCcEEEEecccccCC-------------CCCEEcCceEEECCCCcEEEE
Confidence 344566788899999987 3221100 122233457799999998865
No 70
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=58.95 E-value=59 Score=32.14 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCcEEEE-cc-cccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 106 ILTMLSKAAKDSNMYVVV-NL-FEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 106 ~l~~Ls~lAr~~~i~IV~-g~-~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
....++..|.+++++++. |. ..... . . .+..++=...+++|+|++++.
T Consensus 194 ~~~~~~~rA~e~~~~vv~an~~G~~~~-------~---~-~~~~~~G~S~i~~p~G~i~~~ 243 (284)
T cd07573 194 WQRVQRGHAIANGVPVAAVNRVGVEGD-------P---G-SGITFYGSSFIADPFGEILAQ 243 (284)
T ss_pred HHHHHHHHHHHcCceEEEeccccccCC-------C---C-CCceeeceeEEECCCCCeeec
Confidence 344456678899999986 32 11100 0 0 123334567789999998755
No 71
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=58.88 E-value=35 Score=35.71 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCcEEEE-cccccccCCC---CCCCCcccCCCCCeeEEEEEEEcCCCcEEe
Q psy10159 107 LTMLSKAAKDSNMYVVV-NLFEIVACPS---DDQSSICRGQDRNYHYNTNLVFDRQGQIIA 163 (492)
Q Consensus 107 l~~Ls~lAr~~~i~IV~-g~~ek~~c~~---~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~ 163 (492)
...++..|.++++||+. |..-...-.+ +.+..+-.. +...+|=...+++|+|++++
T Consensus 261 ~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~-~~~~f~G~S~Ii~P~G~il~ 320 (363)
T cd07587 261 PIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK-DFGHFYGSSYVAAPDGSRTP 320 (363)
T ss_pred HHHHHHHHHhcCcEEEEecccccccccccccccccccccc-ccccccceeEEECCCCCCcc
Confidence 34566789999999986 3211110000 000000000 11235567889999998653
No 72
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=58.67 E-value=38 Score=34.08 Aligned_cols=72 Identities=7% Similarity=0.012 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCChhh-------------H------------HHHHHHHHhhhCCceEEEeCCcCCCCc
Q psy10159 208 PAVQLVKQKNITDFVYTAAWMSELPLL-------------T------------AVTVHSSWAFSMDVNLLSSNYNNPAQY 262 (492)
Q Consensus 208 ~a~~L~~~~Gad~iv~ptaw~~~~p~l-------------~------------~~~~~~~~A~en~v~vlaan~~~~~~~ 262 (492)
..++.++ +|+++|++|=.|....+.. . ..+..+.-|.++++.++.....-....
T Consensus 25 ~i~~A~~-~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~ 103 (297)
T cd07564 25 LIEEAAA-NGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSERDGGT 103 (297)
T ss_pred HHHHHHH-CCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEeccCCc
Confidence 3444455 8999999998875443321 0 012233457788998886532111111
Q ss_pred CCCccEEECCCCcEEEEc
Q psy10159 263 GGGSGIYAGRQGIKVAVM 280 (492)
Q Consensus 263 ~~Gssi~~~~~G~v~~~~ 280 (492)
..-+.++++++|+++...
T Consensus 104 ~yNs~~vi~~~G~i~~~y 121 (297)
T cd07564 104 LYNTQLLIDPDGELLGKH 121 (297)
T ss_pred eEEEEEEEcCCCCEeeee
Confidence 223456788899877653
No 73
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.37 E-value=36 Score=33.05 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCChhh-------------HHHHHHHHHhhhCCceEEEeCCcCCC-CcCCCccEEECCC
Q psy10159 208 PAVQLVKQKNITDFVYTAAWMSELPLL-------------TAVTVHSSWAFSMDVNLLSSNYNNPA-QYGGGSGIYAGRQ 273 (492)
Q Consensus 208 ~a~~L~~~~Gad~iv~ptaw~~~~p~l-------------~~~~~~~~~A~en~v~vlaan~~~~~-~~~~Gssi~~~~~ 273 (492)
...+.++ +|+|+||+|=.|....+.. ...+..+..|.+++++++..-..... ....=+.++++++
T Consensus 22 ~i~~a~~-~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~ 100 (255)
T cd07581 22 LLAEAAA-AGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPD 100 (255)
T ss_pred HHHHHHH-cCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeeeeCCCCcEEEeEEEECCC
Confidence 3444555 9999999998765433221 11233456788899988874221100 0122245567788
Q ss_pred CcEEEEc
Q psy10159 274 GIKVAVM 280 (492)
Q Consensus 274 G~v~~~~ 280 (492)
|.++...
T Consensus 101 G~i~~~y 107 (255)
T cd07581 101 GEIIAVY 107 (255)
T ss_pred CcEEEEE
Confidence 8776653
No 74
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=57.61 E-value=41 Score=32.27 Aligned_cols=68 Identities=4% Similarity=0.065 Sum_probs=38.3
Q ss_pred HHHHHhCCCcEEEEeCCCCCCChh--------------hHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEECCCCc
Q psy10159 210 VQLVKQKNITDFVYTAAWMSELPL--------------LTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGI 275 (492)
Q Consensus 210 ~~L~~~~Gad~iv~ptaw~~~~p~--------------l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~~~G~ 275 (492)
...++ .|+|+|++|-.+....+. ....+..+..|.++++.++.-..........=+.++++++|.
T Consensus 25 ~~a~~-~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~~~~~~~N~~~~i~~~G~ 103 (253)
T cd07197 25 KEAAE-QGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAEKDGDKLYNTAVVIDPDGE 103 (253)
T ss_pred HHHHH-CCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEEccCCceEEEEEEECCCCe
Confidence 33344 899999999875433221 123345566788889988764321111112234556677776
Q ss_pred EEE
Q psy10159 276 KVA 278 (492)
Q Consensus 276 v~~ 278 (492)
++.
T Consensus 104 i~~ 106 (253)
T cd07197 104 IIG 106 (253)
T ss_pred EEE
Confidence 544
No 75
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=57.17 E-value=61 Score=32.16 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHhCCcEEEE-cccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 110 LSKAAKDSNMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 110 Ls~lAr~~~i~IV~-g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
++..|.+++++++. |..-... .. +...++=...+++|+|++++.
T Consensus 201 ~~~rA~en~~~vv~~N~~G~~~----------~~-~~~~~~G~S~ii~p~G~il~~ 245 (287)
T cd07568 201 QPAAAVANGYFVGAINRVGTEA----------PW-NIGEFYGSSYFVDPRGQFVAS 245 (287)
T ss_pred HHHHHHHCCcEEEEeccccccC----------CC-ccceEeceeEEECCCceEEEe
Confidence 35567789999874 3211100 00 112344567789999998865
No 76
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=55.79 E-value=62 Score=31.93 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=44.8
Q ss_pred hcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEc-ccccccCC
Q psy10159 54 SNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVN-LFEIVACP 132 (492)
Q Consensus 54 ~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g-~~ek~~c~ 132 (492)
+..||+||+.|-.+..... .......+..-|.+++++|+.. ....+.
T Consensus 163 a~~Gaeii~~p~a~~~~~~------------------------------~~~w~~l~~arA~en~~~vv~~n~~g~~~-- 210 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG------------------------------LDHWEVLLRARAIENQVYVLAANRAGFDG-- 210 (274)
T ss_pred HhcCCeEEEEcCCCCCccc------------------------------HHHHHHHHHHHhhhcCceEEEecccCCCC--
Confidence 4458999999977543111 1222333777888999999884 333210
Q ss_pred CCCCCCcccCCCCCeeEEEEEEEcCCCcEEeee
Q psy10159 133 SDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKY 165 (492)
Q Consensus 133 ~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rY 165 (492)
.....+-..++++|.|++++.-
T Consensus 211 -----------~~~~~~G~S~i~~p~G~v~~~~ 232 (274)
T COG0388 211 -----------AGLEFCGHSAIIDPDGEVLAEA 232 (274)
T ss_pred -----------CccEEecceEEECCCccEEeec
Confidence 1246777889999999977653
No 77
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=55.26 E-value=60 Score=32.68 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHhCCcEEEEc--ccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 111 SKAAKDSNMYVVVN--LFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 111 s~lAr~~~i~IV~g--~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
+.-|.+++++|+.. ..+. ++..++=...+++|+|++++.
T Consensus 220 ~arA~en~~~vv~~n~~G~~---------------~~~~~~G~S~ii~p~G~vla~ 260 (302)
T cd07569 220 QAGAYQNGTWVVAAAKAGME---------------DGCDLIGGSCIVAPTGEIVAQ 260 (302)
T ss_pred hhhhhcccceEEEeeccccC---------------CCceEecceEEECCCCCEEEe
Confidence 33477899999874 2222 334566667889999998755
No 78
>PLN02747 N-carbamolyputrescine amidase
Probab=55.19 E-value=36 Score=34.10 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCCh--------hh--------HHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEEC
Q psy10159 208 PAVQLVKQKNITDFVYTAAWMSELP--------LL--------TAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAG 271 (492)
Q Consensus 208 ~a~~L~~~~Gad~iv~ptaw~~~~p--------~l--------~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~~ 271 (492)
..++.++ .|+|+|++|=.|..... +. ......+..|.+++++++..-.........=+.++++
T Consensus 30 ~i~~A~~-~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~ 108 (296)
T PLN02747 30 LVREAHA-KGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIID 108 (296)
T ss_pred HHHHHHH-CCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeeeeecCCCceEEEEEEEC
Confidence 3444455 89999999987543211 00 1122334567888988776321111111122455678
Q ss_pred CCCcEEEE
Q psy10159 272 RQGIKVAV 279 (492)
Q Consensus 272 ~~G~v~~~ 279 (492)
++|.+++.
T Consensus 109 ~~G~i~~~ 116 (296)
T PLN02747 109 ADGTDLGL 116 (296)
T ss_pred CCCCCcce
Confidence 88877654
No 79
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=53.89 E-value=29 Score=31.78 Aligned_cols=67 Identities=7% Similarity=-0.009 Sum_probs=37.4
Q ss_pred HHHHHhCCCcEEEEeCCCCCCChh-------------------hHHHHHHHHHhhhCCceEEEeCCcCCCCcCCCccEEE
Q psy10159 210 VQLVKQKNITDFVYTAAWMSELPL-------------------LTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYA 270 (492)
Q Consensus 210 ~~L~~~~Gad~iv~ptaw~~~~p~-------------------l~~~~~~~~~A~en~v~vlaan~~~~~~~~~Gssi~~ 270 (492)
++.++ .|+|+|++|=+|....+. .......+..|.++++.++..-......+..-+.+++
T Consensus 28 ~~a~~-~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~~~~~~~N~~~~~ 106 (186)
T PF00795_consen 28 EEAAR-QGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPERDDGGLYNSAVVI 106 (186)
T ss_dssp HHHHH-TTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHH-CCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCcccccccccccccccceeEEE
Confidence 34455 799999999887664411 0112234456788888887752211111122234456
Q ss_pred CCCCcEE
Q psy10159 271 GRQGIKV 277 (492)
Q Consensus 271 ~~~G~v~ 277 (492)
+++|.++
T Consensus 107 ~~~g~~~ 113 (186)
T PF00795_consen 107 DPDGEIL 113 (186)
T ss_dssp ETTSEEE
T ss_pred Eeeeccc
Confidence 6666665
No 80
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=53.88 E-value=58 Score=31.82 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHhCCcEEEEcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 112 KAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 112 ~lAr~~~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
..|.+++++++..-..-.. ++...+=...+++|+|++++.
T Consensus 184 ~rA~en~~~vv~an~~G~~-------------~~~~~~G~S~ii~p~G~il~~ 223 (258)
T cd07578 184 NRAFENGCYLIESNRWGLE-------------RGVQFSGGSCIIEPDGTIQAS 223 (258)
T ss_pred HhhhcCCeEEEEecceecc-------------CCcceeeEEEEECCCCcEeec
Confidence 5678899998874211100 222333456789999998753
No 81
>PLN00202 beta-ureidopropionase
Probab=53.69 E-value=58 Score=34.72 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCcEEEE-cccccccCCC-CC--CCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 106 ILTMLSKAAKDSNMYVVV-NLFEIVACPS-DD--QSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 106 ~l~~Ls~lAr~~~i~IV~-g~~ek~~c~~-~~--~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
+...++..|.++++||+. |..-...-++ -+ +..+-.. +...++=...+++|+|++++.
T Consensus 281 w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~-~~~~f~G~S~Iv~P~G~vla~ 342 (405)
T PLN00202 281 WPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK-DFGHFYGSSHFSAPDASCTPS 342 (405)
T ss_pred HHHHHHHHHHhcCCEEEEecccccccccccccccccccccc-ccccccceeEEEcCCCCEecc
Confidence 345567788999999987 4221110000 00 0000000 112345667899999987643
No 82
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=48.50 E-value=86 Score=30.56 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHhCCcEEEE-cc-cccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEee
Q psy10159 110 LSKAAKDSNMYVVV-NL-FEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAK 164 (492)
Q Consensus 110 Ls~lAr~~~i~IV~-g~-~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~r 164 (492)
++.-|.++++|++. |. .+... .. .+....=...+++|+|++++.
T Consensus 176 ~~~rA~en~~~vv~~n~~G~~~~----------~~-~~~~~~G~S~i~~p~G~i~~~ 221 (259)
T cd07577 176 MPIRALENRVFTITANRIGTEER----------GG-ETLRFIGKSQITSPKGEVLAR 221 (259)
T ss_pred hhHhhhhcCceEEEEecCcccCC----------CC-CCceEeeeeEEECCCCCEEee
Confidence 46678899999886 32 22110 00 112233567889999998765
No 83
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=44.08 E-value=45 Score=32.85 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLA 69 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~ 69 (492)
+....++.+.+.++...++|..++||||-+-+
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs 151 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRS 151 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 34455666666666666778899999999754
No 84
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.33 E-value=58 Score=32.01 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
..++.++.+.+.|+.|+.-|++.||++-.. .++.. ++ ...| ....+.++.|...|+++
T Consensus 84 ~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~--~~-------------~~~~------~~~~~~l~~l~~~a~~~ 141 (275)
T PRK09856 84 MRRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLT--PP-------------NVIW------GRLAENLSELCEYAENI 141 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCC--CH-------------HHHH------HHHHHHHHHHHHHHHHc
Confidence 567789999999999999999998886432 22221 10 0000 12346789999999999
Q ss_pred CcEEEE
Q psy10159 118 NMYVVV 123 (492)
Q Consensus 118 ~i~IV~ 123 (492)
||.|.+
T Consensus 142 gv~l~i 147 (275)
T PRK09856 142 GMDLIL 147 (275)
T ss_pred CCEEEE
Confidence 999887
No 85
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=41.16 E-value=98 Score=30.89 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=27.0
Q ss_pred HHhCCCcEEEEeCCCCCCChhh---------HHHHHHHHHhhhCCceEEEe
Q psy10159 213 VKQKNITDFVYTAAWMSELPLL---------TAVTVHSSWAFSMDVNLLSS 254 (492)
Q Consensus 213 ~~~~Gad~iv~ptaw~~~~p~l---------~~~~~~~~~A~en~v~vlaa 254 (492)
++ .|+|+||+|=.|....+.. ...+..+..|.++++.+++.
T Consensus 28 ~~-~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 28 KA-TGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred HH-CCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 44 8999999998765432211 12334456788899988764
No 86
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=40.01 E-value=58 Score=27.72 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=7.3
Q ss_pred HhcCCCcEEEcCCCCcC
Q psy10159 53 ASNYDVDIIVFPECGLA 69 (492)
Q Consensus 53 A~~~gadIIVfPE~~l~ 69 (492)
..++|--|++|||-..+
T Consensus 87 ~l~~~~~i~ifPEG~~~ 103 (132)
T PF01553_consen 87 ILRKGGSIVIFPEGTRS 103 (132)
T ss_dssp HHHC---EEE-TT-S--
T ss_pred HhhhcceeeecCCccCc
Confidence 44444449999999543
No 87
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=37.99 E-value=76 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCcEEEcCCCCcC
Q psy10159 45 QYVRIIQNASNYDVDIIVFPECGLA 69 (492)
Q Consensus 45 ~~~~~i~~A~~~gadIIVfPE~~l~ 69 (492)
...+.+.++.++|..+++|||-...
T Consensus 77 ~~~~~~~~~l~~g~~v~ifPeG~~~ 101 (130)
T TIGR00530 77 TALKAAIEVLKQGRSIGVFPEGTRS 101 (130)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3344455556678899999999753
No 88
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=33.41 E-value=1.8e+02 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=12.2
Q ss_pred HHHHHHHhCCcEEEEc
Q psy10159 109 MLSKAAKDSNMYVVVN 124 (492)
Q Consensus 109 ~Ls~lAr~~~i~IV~g 124 (492)
.+...|.++++||+..
T Consensus 191 ~~~arA~en~~~vv~a 206 (280)
T cd07574 191 GAQARALENQCYVVQS 206 (280)
T ss_pred HHHHHHHhhCceEEEe
Confidence 4566788899998874
No 89
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=29.98 E-value=1.8e+02 Score=28.31 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEE
Q psy10159 43 AEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVV 122 (492)
Q Consensus 43 l~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV 122 (492)
++.+.+.|++++ +++|+||.==-+ |... + ....+..+.+...+.+.|..+|
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~-----------~---------------~~p~~~q~~~a~~lidaGaDiI 220 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW--GIEY-----------E---------------NYPTPEQRELARALIDAGADII 220 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc--CCCC-----------C---------------CCCCHHHHHHHHHHHHcCCCEE
Confidence 478888888888 678887753222 2222 0 1224567788888888999999
Q ss_pred EcccccccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcE
Q psy10159 123 VNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQI 161 (492)
Q Consensus 123 ~g~~ek~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~i 161 (492)
+|..- ++. ++-..|+...++=.=|..
T Consensus 221 iG~Hp-----------Hv~--q~~E~y~~~~I~YSLGNf 246 (250)
T PF09587_consen 221 IGHHP-----------HVI--QPVEIYKGKPIFYSLGNF 246 (250)
T ss_pred EeCCC-----------Ccc--cceEEECCEEEEEeCccc
Confidence 98532 233 555666544444434543
No 90
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.73 E-value=1.4e+02 Score=29.51 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
..++.++.+++.++.|+.-|++.|+++..... +.. .....| ....+.++.+..+|+++
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~---------------~~~~~~------~~~~~~l~~l~~~A~~~ 145 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YEE---------------HDEETR------RRFREGLKEAVELAARA 145 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCcccc-cCc---------------CCHHHH------HHHHHHHHHHHHHHHHc
Confidence 56678899999999999999999998642110 100 000000 12346688889999999
Q ss_pred CcEEEEc
Q psy10159 118 NMYVVVN 124 (492)
Q Consensus 118 ~i~IV~g 124 (492)
|+.|.+=
T Consensus 146 Gv~l~lE 152 (279)
T TIGR00542 146 QVTLAVE 152 (279)
T ss_pred CCEEEEe
Confidence 9999883
No 91
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=28.83 E-value=2e+02 Score=29.05 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=38.0
Q ss_pred CCCcEEEEeCCCCCCChhh---------H------HHHHHHHHhhhCCceEEEeCCc-CCC--CcCCCccEEECCCCcEE
Q psy10159 216 KNITDFVYTAAWMSELPLL---------T------AVTVHSSWAFSMDVNLLSSNYN-NPA--QYGGGSGIYAGRQGIKV 277 (492)
Q Consensus 216 ~Gad~iv~ptaw~~~~p~l---------~------~~~~~~~~A~en~v~vlaan~~-~~~--~~~~Gssi~~~~~G~v~ 277 (492)
.|+++||+|=.|.....+. . ..+..+..|.++++.++..... ... ....-+.++++++|.++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii 114 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVV 114 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEE
Confidence 6999999998765432210 0 0123345688899988764211 111 11233567788999877
Q ss_pred EEc
Q psy10159 278 AVM 280 (492)
Q Consensus 278 ~~~ 280 (492)
+..
T Consensus 115 ~~Y 117 (295)
T cd07566 115 FNY 117 (295)
T ss_pred EEE
Confidence 653
No 92
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.18 E-value=89 Score=30.65 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=53.1
Q ss_pred HHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccccc
Q psy10159 49 IIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEI 128 (492)
Q Consensus 49 ~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ek 128 (492)
.|++|-+-++++++|=|-+-. . || ....++++-+..+|++. +..++=..|.
T Consensus 146 AIARALaM~P~vmLFDEPTSA---L---------------DP----------Elv~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSA---L---------------DP----------ELVGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred HHHHHHcCCCCEEeecCCccc---C---------------CH----------HHHHHHHHHHHHHHHcC-CeEEEEechh
Confidence 567777788899999886421 1 23 46789999999999875 6655544444
Q ss_pred ccCCCCCCCCcccCCCCCeeEEEEEEEcCCCcEEeeeecCCCCcc
Q psy10159 129 VACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLE 173 (492)
Q Consensus 129 ~~c~~~~~~~~cp~~~~~~~yNT~vvf~~~G~ii~rYrK~~Lf~e 173 (492)
.. -+..-+..++++ +|.++.....-.+|..
T Consensus 197 ~F--------------Ar~VadrviFmd-~G~iie~g~p~~~f~~ 226 (240)
T COG1126 197 GF--------------AREVADRVIFMD-QGKIIEEGPPEEFFDN 226 (240)
T ss_pred HH--------------HHHhhheEEEee-CCEEEEecCHHHHhcC
Confidence 22 012334455555 8988888776666653
No 93
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=27.79 E-value=1.1e+02 Score=30.15 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=36.0
Q ss_pred CCCcEEEEeCCCCCCChh--hHHHHHHHHHhhhCCceEEEeCCcC-CC-CcCCCccEEECCCCcEEE
Q psy10159 216 KNITDFVYTAAWMSELPL--LTAVTVHSSWAFSMDVNLLSSNYNN-PA-QYGGGSGIYAGRQGIKVA 278 (492)
Q Consensus 216 ~Gad~iv~ptaw~~~~p~--l~~~~~~~~~A~en~v~vlaan~~~-~~-~~~~Gssi~~~~~G~v~~ 278 (492)
.|+++|++|=.+....+. ....+..+..|.++++.++.-.... .. ....=+.++++++|.++.
T Consensus 38 ~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~ 104 (270)
T cd07571 38 EKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILG 104 (270)
T ss_pred CCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcC
Confidence 699999999875543221 1123445566888999888743211 10 011224456777776543
No 94
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.18 E-value=1.9e+02 Score=26.66 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEccc
Q psy10159 47 VRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLF 126 (492)
Q Consensus 47 ~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~ 126 (492)
.+.++..++.|.|-||+--.+..+..+ .. ..+... .|. ......++.+..+|.++||-|.+|+.
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~--yp-------s~~~~~-----~~~--~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAF--YP-------SKLSPG-----GFY--MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccc--CC-------ccccCc-----ccc--CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 344555556799999988666655443 11 111100 121 23356789999999999999999976
Q ss_pred c
Q psy10159 127 E 127 (492)
Q Consensus 127 e 127 (492)
.
T Consensus 87 ~ 87 (166)
T PF14488_consen 87 F 87 (166)
T ss_pred C
Confidence 4
No 95
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.82 E-value=1.6e+02 Score=28.92 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
..++.++.+.++|+.|+.-|++.|++|-. ..+.. +.....| ......++.|..+|+++
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~--------------~~~~~~~------~~~~~~l~~l~~~a~~~ 145 (284)
T PRK13210 88 TRERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYE--------------EKSEETR------QRFIEGLAWAVEQAAAA 145 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCc--ccccc--------------cccHHHH------HHHHHHHHHHHHHHHHh
Confidence 45667888999999999999999998621 11100 0000000 12345678888999999
Q ss_pred CcEEEE
Q psy10159 118 NMYVVV 123 (492)
Q Consensus 118 ~i~IV~ 123 (492)
|+.|.+
T Consensus 146 gv~l~l 151 (284)
T PRK13210 146 QVMLAV 151 (284)
T ss_pred CCEEEE
Confidence 999987
No 96
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=22.49 E-value=2.5e+02 Score=27.55 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEE
Q psy10159 43 AEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVV 122 (492)
Q Consensus 43 l~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV 122 (492)
...+.+.|+.|.++++|||-++-. +... ... ....+.+++....|.+.++.||
T Consensus 88 ~~~i~~Ai~~Ai~~gadIIn~S~g----~~~~---------~~~--------------~~~~~~l~~ai~~A~~~Gilvv 140 (247)
T cd07491 88 PQSAAKAIEAAVEKKVDIISMSWT----IKKP---------EDN--------------DNDINELENAIKEALDRGILLF 140 (247)
T ss_pred HHHHHHHHHHHHHCCCcEEEeeee----cccc---------ccc--------------ccchHHHHHHHHHHHhCCeEEE
Confidence 456777888888899999998832 2110 000 0123456666666777899998
Q ss_pred Eccccc
Q psy10159 123 VNLFEI 128 (492)
Q Consensus 123 ~g~~ek 128 (492)
+.....
T Consensus 141 aaAGN~ 146 (247)
T cd07491 141 CSASDQ 146 (247)
T ss_pred EecCCC
Confidence 876543
No 97
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=22.02 E-value=1.7e+02 Score=29.19 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhCCcEEEEcccc
Q psy10159 48 RIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFE 127 (492)
Q Consensus 48 ~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~~i~IV~g~~e 127 (492)
-+|+.|-.++++|+++=|=+.. +|. ...-++++.+..++++.++.||+-+.+
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~--------------LDi--------------~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSH--------------LDI--------------AHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccc--------------cCH--------------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4778888899999999887532 211 234588999999999999999888765
Q ss_pred c
Q psy10159 128 I 128 (492)
Q Consensus 128 k 128 (492)
.
T Consensus 199 l 199 (258)
T COG1120 199 L 199 (258)
T ss_pred H
Confidence 5
No 98
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.57 E-value=1.7e+02 Score=28.83 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
..+..++.+++.|+.|+.-|+..|+++ |+... .+ ..... .+ ....+.++.|..+|+++
T Consensus 93 ~r~~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~---------~~-~~~~~-~~------~~~~~~l~~l~~~A~~~ 150 (283)
T PRK13209 93 VRAQALEIMRKAIQLAQDLGIRVIQLA-----GYDVY---------YE-QANNE-TR------RRFIDGLKESVELASRA 150 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEC-----Ccccc---------cc-ccHHH-HH------HHHHHHHHHHHHHHHHh
Confidence 456678889999999999999999985 22210 00 00000 00 12245678889999999
Q ss_pred CcEEEE
Q psy10159 118 NMYVVV 123 (492)
Q Consensus 118 ~i~IV~ 123 (492)
|+.|.+
T Consensus 151 GV~i~i 156 (283)
T PRK13209 151 SVTLAF 156 (283)
T ss_pred CCEEEE
Confidence 998888
No 99
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=21.44 E-value=1.3e+02 Score=24.71 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEcCCCCcC
Q psy10159 41 SNAEQYVRIIQNASNYDVDIIVFPECGLA 69 (492)
Q Consensus 41 ~Nl~~~~~~i~~A~~~gadIIVfPE~~l~ 69 (492)
.+.+.+.+.++ +.++|..+++|||-...
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 34444544444 44568899999999754
No 100
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=21.35 E-value=2.4e+02 Score=27.53 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=34.4
Q ss_pred EEEEeccCCChHHHHHHHHhCCCcEEEE--eCCCCCCChhhH---HHHHHHHHhhhCCceEEEeCC
Q psy10159 196 GTFTCFDILFPQPAVQLVKQKNITDFVY--TAAWMSELPLLT---AVTVHSSWAFSMDVNLLSSNY 256 (492)
Q Consensus 196 G~~IC~Di~Fpe~a~~L~~~~Gad~iv~--ptaw~~~~p~l~---~~~~~~~~A~en~v~vlaan~ 256 (492)
++++|.|+- ++...+.++ +|+++||. |..|.. ..... ...-....+++|++.|.++=.
T Consensus 34 ~V~~~ld~t-~~vi~~A~~-~~~dlIItHHP~~f~~-~~~~~~~~~~~~~~~~li~~~I~vy~~Ht 96 (241)
T PF01784_consen 34 KVLVALDAT-PEVIEEAIE-KGADLIITHHPLFFKP-LKSLTGDDYKGKIIEKLIKNGISVYSAHT 96 (241)
T ss_dssp EEEEESS-S-HHHHHHHHH-TT-SEEEESS-SSSST-SSHCHCHSHHHHHHHHHHHTT-EEEEESH
T ss_pred EEEEEEeCC-HHHHHHHHH-cCCCEEEEcCchhhcC-CccccccchhhHHHHHHHHCCCEEEEecc
Confidence 688888874 556666666 99999994 555532 22221 123344568889999998743
No 101
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=21.16 E-value=1.7e+02 Score=26.95 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCC-CCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 39 MESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPV-PKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 39 ~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~-~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
...++.++.+.+... ...+++|.. + +.+ .++.+.+..|++........|. ...+.+..+++..
T Consensus 71 ~l~~l~~~~~~l~~~-~~~v~~v~I-----S-vDP~~DTp~~L~~Y~~~~~~~~~~lt---------g~~~~i~~l~~~~ 134 (174)
T PF02630_consen 71 TLANLSQLQKQLGEE-GKDVQFVFI-----S-VDPERDTPEVLKKYAKKFGPDFIGLT---------GSREEIEELAKQF 134 (174)
T ss_dssp HHHHHHHHHHHHHHT-TTTEEEEEE-----E-SSTTTC-HHHHHHHHHCHTTTCEEEE---------EEHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhc-cCceEEEEE-----E-eCCCCCCHHHHHHHHHhcCCCcceeE---------eCHHHHHHHHHHH
Confidence 455666666666554 334555542 2 222 1234456666665432212221 1235567788888
Q ss_pred CcEEEEcccccccCCCCCCCCcccCCCCCe---eEEEEEEEcCCCcEEeeee
Q psy10159 118 NMYVVVNLFEIVACPSDDQSSICRGQDRNY---HYNTNLVFDRQGQIIAKYR 166 (492)
Q Consensus 118 ~i~IV~g~~ek~~c~~~~~~~~cp~~~~~~---~yNT~vvf~~~G~ii~rYr 166 (492)
+++..-...++. ++.+ +-+..+++||+|+++..|.
T Consensus 135 ~v~~~~~~~~~~--------------~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 135 GVYYEKVPEDKP--------------EGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp THCEEEEESSST--------------TSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HhhhcccccccC--------------CCCceEecccEEEEEcCCCcEEEEEc
Confidence 877654432221 2222 2357889999999998884
No 102
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.49 E-value=1.8e+02 Score=28.73 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEcCCCCcCCCCCCCcccCcccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHhC
Q psy10159 38 LMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDS 117 (492)
Q Consensus 38 ~~~~Nl~~~~~~i~~A~~~gadIIVfPE~~l~g~~~~~~r~~~~~~~~~vp~~~~~~~pc~~~~~~~~~l~~Ls~lAr~~ 117 (492)
..+..++.+.+.++.|++-|++.|++.-....+ .. + ...| ......+++|..+|+++
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-~~---~-------------~~~~------~~~~~~l~~l~~~a~~~ 135 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYLG-QS---K-------------EEGL------KRVIEALNELIDKAETK 135 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC-CC---H-------------HHHH------HHHHHHHHHHHHhccCC
Confidence 577789999999999999999998873221110 00 0 0000 12235567777777889
Q ss_pred CcEEEE
Q psy10159 118 NMYVVV 123 (492)
Q Consensus 118 ~i~IV~ 123 (492)
+|.|.+
T Consensus 136 gi~l~l 141 (279)
T cd00019 136 GVVIAL 141 (279)
T ss_pred CCEEEE
Confidence 999887
No 103
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=20.01 E-value=2.4e+02 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.021 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCcEEEcCCCCcC
Q psy10159 44 EQYVRIIQNASNYDVDIIVFPECGLA 69 (492)
Q Consensus 44 ~~~~~~i~~A~~~gadIIVfPE~~l~ 69 (492)
..+.+.++++.++|-.++||||-+-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34445566666679999999999764
Done!