RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10159
(492 letters)
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 97.5 bits (243), Expect = 1e-22
Identities = 37/231 (16%), Positives = 78/231 (33%), Gaps = 37/231 (16%)
Query: 1 MVQHARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDI 60
M E + A +++ + D + + + + V++
Sbjct: 1 MGSIGSMGKPIEGFLVAAIQFP----VPIVNSRKDIDHNIESIIRTLHATKAGYP-GVEL 55
Query: 61 IVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMY 120
I+FPE + + + + +L+ +P E + +KA K++ +Y
Sbjct: 56 IIFPE--YSTQGLNTAKWLSEEFLLDVPGKE---------------TELYAKACKEAKVY 98
Query: 121 VVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEYAFDTTP 180
V ++ E YNT ++ D QG+II KYRK +
Sbjct: 99 GVFSIMER------------NPDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPG 146
Query: 181 QPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQK-NITDFVYTAAWMSE 230
M G C D + P+ A + + N+ ++ + + ++
Sbjct: 147 DLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNV--YIRISGYSTQ 195
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 87.6 bits (217), Expect = 4e-19
Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 40/270 (14%)
Query: 3 QHARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIV 62
+H SSS + AVV Y + A + + ++ +D++V
Sbjct: 2 RHGDISSSNDTVGVAVVNYK----MPRLHTAAEVLDNARKIAEMIVGMKQGLP-GMDLVV 56
Query: 63 FPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVV 122
FPE L + A++ + IP E + S+A + +N++ V
Sbjct: 57 FPEYSL--QGIMYDPAEMMETAVAIPGEE---------------TEIFSRACRKANVWGV 99
Query: 123 VNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLFLEYAFDTTPQP 182
+L R YNT ++ D G+I+ KYRK +
Sbjct: 100 FSLTG----------ERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPGGQ 149
Query: 183 EMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYTAAWMSELP----LLTAVT 238
++ D +P+ + K V +M ++
Sbjct: 150 TYVSEGPKGM-KISLIIXDDGNYPEIW-RDCAMKGAELIVRCQGYMYPAKDQQVMMAKAM 207
Query: 239 VHSSWAFSMDVNLLSSNYNNPAQYGGGSGI 268
++ + N ++ ++ Y G S I
Sbjct: 208 AWANNCYVAVAN--AAGFDGVYSYFGHSAI 235
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 82.3 bits (204), Expect = 7e-18
Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 40/195 (20%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
+ N + ++I+ AS ++V PE G Y + +
Sbjct: 17 DKNYSKAEKLIKEASKQGAQLVVLPELFDTG------------YNFE---TREEVFEIAQ 61
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
+ T L A+D+ +Y+V E +D + YN+ +V +G
Sbjct: 62 KIPEGETTTFLMDVARDTGVYIVAGTAE---------------KDGDVLYNSAVVVGPRG 106
Query: 160 QIIAKYRKFNLFLE--YAFDTTP-QPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQK 216
I KYRK +LF + F P F+ F G CFD FP+ A L +
Sbjct: 107 -FIGKYRKIHLFYREKFFF--EPGDLGFRVFDLGFM-KVGVMICFDWFFPESARTLALKG 162
Query: 217 NITDFV-YTAAWMSE 230
D + + A +
Sbjct: 163 --ADVIAHPANLVMP 175
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 83.2 bits (206), Expect = 7e-18
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 36/183 (19%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
E + + ++ A++ + IVFPE LA T R E + E
Sbjct: 21 EQVVVRLLDMLTKAASRGANFIVFPE--LALTTFFPRWHFTD---------EAELDSFYE 69
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
++ L + A + + + E+V +NT+++ D+ G
Sbjct: 70 TEMPGPVVRPLFEKAAELGIGFNLGYAELVV-----------EGGVKRRFNTSILVDKSG 118
Query: 160 QIIAKYRKFNLFLEYAFDTTPQPEMI-------------TFNTDFGVTFGTFTCFDILFP 206
+I+ KYRK +L ++ + + ++ D G F D +P
Sbjct: 119 KIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAA-KMGMFIANDRRWP 177
Query: 207 QPA 209
+
Sbjct: 178 EAW 180
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 81.4 bits (201), Expect = 8e-17
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 31/186 (16%)
Query: 29 PDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIP 88
E+ + +I+ A+ +I+ E P+
Sbjct: 84 IPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTM------------PFAFCT- 130
Query: 89 TPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYH 148
+ + E + ML++ AK NM ++ ++ E +
Sbjct: 131 REKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILER------------DMEHGETI 178
Query: 149 YNTNLVFDRQGQIIAKYRKFNLFLEYAFD----TTPQPEMIT-FNTDFGVTFGTFTCFDI 203
+NT +V G+ + K+RK ++ F+ F T+FG C+
Sbjct: 179 WNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFG-KLAVNICYGR 237
Query: 204 LFPQPA 209
PQ
Sbjct: 238 HHPQNW 243
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Length = 276
Score = 76.5 bits (189), Expect = 8e-16
Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 45/186 (24%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
N + +++ A+ +I+ PEC P Y IP
Sbjct: 18 SDNLTRACSLVREAAKQGANIVSLPEC----FNSPYGTTYFPDYAEKIPGE--------- 64
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
LS+ AK+S++Y++ + YNT VF G
Sbjct: 65 ------STQKLSEVAKESSIYLIGGSIPE------------EDAGK--LYNTCSVFGPDG 104
Query: 160 QIIAKYRKFNLF----------LEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPA 209
++ K+RK +LF E +P TF+T + G C+D+ F + A
Sbjct: 105 SLLVKHRKIHLFDIDVPGKITFQESKT-LSPGDSFSTFDTPYC-KVGLGICYDMRFAELA 162
Query: 210 VQLVKQ 215
++
Sbjct: 163 QIYAQR 168
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 76.1 bits (188), Expect = 1e-15
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 58/204 (28%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
+ N + AS +++ PE G Y+ + + A
Sbjct: 36 QHNLDLIDDAAARASEQGAQLLLTPELFGFG------------YVPSQICAQVSAEQVDA 83
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
+ L A+D + +V +L G ++ T + D G
Sbjct: 84 A------RSRLRGIARDRGIALVWSLPGP------------EGPEQ--RGITAELADEHG 123
Query: 160 QIIAKYRK---FNLFLEYAF---DTTPQPEMITFNTDFGVTFGTFTCFDILFPQPA---- 209
+++A Y+K + + AF + P + C+D+ FP+
Sbjct: 124 EVLASYQKVQLYGPEEKAAFVPGEQPPPV----LSWGGR-QLSLLVCYDVEFPEMVRAAA 178
Query: 210 ---VQLVKQKNITDFVYTAAWMSE 230
QLV + A +
Sbjct: 179 ARGAQLV--------LVPTALAGD 194
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 75.0 bits (185), Expect = 3e-15
Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 39/192 (20%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
N Q + + N +VD++V PE +H +
Sbjct: 36 SKNETQITQWFEKNMNAEVDVVVLPEM------------------WNNGYDLEHLNEKAD 77
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
+ + + + A+ + +V S+ ++ +NT ++ G
Sbjct: 78 NNL-GQSFSFIKHLAEKYKVDIVA-------------GSVSNIRNNQI-FNTAFSVNKSG 122
Query: 160 QIIAKYRK---FNLFLEYAFDTTPQPEMIT-FNTDFGVTFGTFTCFDILFPQPAVQLVKQ 215
Q+I +Y K + E+ F T + F G C+D+ FP+ +
Sbjct: 123 QLINEYDKVHLVPMLREHEF-LTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPA-R 180
Query: 216 KNITDFVYTAAW 227
Y A W
Sbjct: 181 SGAKIAFYVAQW 192
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics,
four layer sandwich, PSI, protein structure initiative;
2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Length = 291
Score = 74.2 bits (183), Expect = 6e-15
Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 43/189 (22%)
Query: 40 ESNAEQYVRIIQNA--SNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPY 97
+N ++ I+ A D ++V PEC P + Y I E
Sbjct: 26 MANLQRAATFIERAMKEQPDTKLVVLPEC----FNSPYSTDQFRKYSEVINPKEP----- 76
Query: 98 QEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSI-CRGQDRNYHYNTNLVFD 156
+ LS A + +V +I + YNT+++F+
Sbjct: 77 ------STSVQFLSNLANKFKIILVG-------------GTIPELDPKTDKIYNTSIIFN 117
Query: 157 RQGQIIAKYRKFNLF----------LEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFP 206
G++I K+RK +LF E +P + T +T +G FG C+D+ FP
Sbjct: 118 EDGKLIDKHRKVHLFDVDIPNGISFHESET-LSPGEKSTTIDTKYG-KFGVGICYDMRFP 175
Query: 207 QPAVQLVKQ 215
+ A+ ++
Sbjct: 176 ELAMLSARK 184
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 68.8 bits (169), Expect = 3e-13
Identities = 27/197 (13%), Positives = 49/197 (24%), Gaps = 47/197 (23%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
N + Y +++ + D+++ PE +G D A
Sbjct: 19 AGNRDYYGALLEPLAG-QSDLVILPETFTSGFS---------------NEAIDKAEDMDG 62
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
P + + A + S R + +N L G
Sbjct: 63 P-----TVAWIRTQAARLGAAITG-------------SVQLRTEHG--VFNRLLWATPDG 102
Query: 160 QIIAKYRK---FNLFLEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQK 216
+ Y K F E+ E + G C+D+ FP +
Sbjct: 103 A-LQYYDKRHLFRFGNEHLR-YAAGRERLCVEWK-GWRINPQVCYDLRFPVFCRNRFDVE 159
Query: 217 NITD-----FVYTAAWM 228
++ A W
Sbjct: 160 RPGQLDFDLQLFVANWP 176
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 68.2 bits (167), Expect = 2e-12
Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 54/221 (24%)
Query: 6 RKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPE 65
R++ + + AV + TS D E N + +I+ A +++ PE
Sbjct: 7 RRTMATGRHFIAVCQMTSD----NDLEK--------NFQAAKNMIERAGEKKCEMVFLPE 54
Query: 66 CGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNL 125
C K I + D + + + A+ N+++ +
Sbjct: 55 C----FDFI---GLNKNEQIDLAMATD-----------CEYMEKYRELARKHNIWLSLGG 96
Query: 126 FEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKYRKFNLF----------LEYA 175
D + +NT+L+ D G A+Y K +LF +E
Sbjct: 97 LHHKD-----------PSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESE 145
Query: 176 FDTTPQPEMIT-FNTDFGVTFGTFTCFDILFPQPAVQLVKQ 215
F + EMI +T G G C+D+ FP+ ++ K+
Sbjct: 146 F-SKAGTEMIPPVDTPIG-RLGLSICYDVRFPELSLWNRKR 184
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 58.3 bits (141), Expect = 3e-09
Identities = 41/188 (21%), Positives = 61/188 (32%), Gaps = 35/188 (18%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
N + V Q A + ++ PE L+G P PED +
Sbjct: 22 AGNVAKIVAAAQAAHDAGAHFLIAPELALSGYP-----------------PEDLLL---R 61
Query: 100 PHKYDKILTMLSKAAKDS----NMYVVV-NLFEIVACPSDDQSSICRGQDRNYHYNTNLV 154
P Y L++ A + V+V + + + +I RG YN +
Sbjct: 62 PAFYAASDAALAELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASL 121
Query: 155 FDRQGQIIAKYRKFNL-----FLEY-AFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQP 208
G++ YRK +L F E F T P + N GV FG C D+
Sbjct: 122 IV-GGEVAGTYRKQDLPNTEVFDEKRYFATDAAPYVFELN---GVKFGVVICEDVWHASA 177
Query: 209 AVQLVKQK 216
A
Sbjct: 178 AQLAKAAG 185
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 53.9 bits (130), Expect = 6e-08
Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
NAE +R ++++ ++ FPE L G P ED
Sbjct: 20 AGNAEAILRWTRHSAEQGAHLVAFPEMALTGYP-----------------VED---LALR 59
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACP-SDDQSSICRGQDRNYHYNTNLVFDRQ 158
+ T L + A L +V + + GQ N V R
Sbjct: 60 SSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHR- 118
Query: 159 GQIIAKYRKFNL-----FLE--YAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQ 211
G++ + K +L F E Y F ++ + GV C D+ V
Sbjct: 119 GRVALTFAKHHLPNYGVFDEFRY-FVPGDTMPIVRLH---GVDIALAICEDLWQDGGRVP 174
Query: 212 LVKQKNIT 219
+
Sbjct: 175 AARSAGAG 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 4e-05
Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 75/247 (30%)
Query: 98 QEP----HKYDKILTMLSKAAKD----SNMYVVVNL-FEIVACPSDDQSSIC------RG 142
QE Y SKAA+D ++ + F I+ ++ ++ +G
Sbjct: 1627 QEQGMGMDLYKT-----SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 143 QD--RNYHYNTNLVFDRQGQIIAKYRKFNLFLEYAFDTTPQPEMITFNTDFGVTFGT-FT 199
+ NY + ++F+ K K +F E +T TF ++ G+ T FT
Sbjct: 1682 KRIRENY---SAMIFETIVDGKLKTEK--IFKEINEHSTS----YTFRSEKGLLSATQFT 1732
Query: 200 CFDILFPQPA--------VQLVKQKNITDFV----------YTAAWMSELPLLTAVTVHS 241
QPA + +K K + Y A L ++
Sbjct: 1733 -------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--------LASLA--D 1775
Query: 242 SWAFSMDVNLL-----SSNYNNPAQYGGGS--GIYAGRQGIKVAVMPQYTGSQLLISRVP 294
+ V ++ + P G S G+ A G A Q Q ++ RV
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERVG 1834
Query: 295 KKSSVVV 301
K++ +V
Sbjct: 1835 KRTGWLV 1841
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 72/622 (11%), Positives = 158/622 (25%), Gaps = 238/622 (38%)
Query: 9 SSREFYTAAVVEYTSRNIILPDREWAARDLM----ESNAEQYVRIIQNASNYDVDIIVFP 64
+ + +++ I+ D L E + ++ + ++
Sbjct: 41 MPKSILSKEEIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-- 95
Query: 65 ECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKI-------LTMLSKAAK-- 115
+P+ + +P ++T E Y + + K L +A
Sbjct: 96 ------SPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 116 DSNMYVVVN---------L---------------FEI----VA-CPSDD-----QSSICR 141
V+++ + F+I + C S + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 142 GQDRNYHYNTNLVFD-RQGQIIAKYRKFNLFLE--Y-----------------AFD---- 177
D N+ ++ + + + L Y AF+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 178 ---TTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKNITDFVYT------AAWM 228
TT VT D L + + ++
Sbjct: 268 ILLTT---------RFKQVT-------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 229 ----SELPLLTAVTVH---------------SSWAFSMDVN------LLSSNYNN--PAQ 261
+LP +T + ++W VN ++ S+ N PA+
Sbjct: 312 DCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 262 YGGGSGIYAGRQGIKVAVMPQ-----------------YTGSQLLISRVPKKSSVVV-PK 303
Y ++ +++V P + ++++++ K S V PK
Sbjct: 371 Y---RKMF-----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 304 SESHVVPLI---------PVPTHHKNQLRLLCDSSYRFFHCKPLESFSDEPKTTSTFSYS 354
+ +P I H+ ++ Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHR---SIV--DHYNIPKTFDSDDLIPPY--------- 468
Query: 355 ESKYGFSCSIEVTWSNKDPNNNMPSYKMFGY------AGERTFSGAKTCY-----IEASV 403
+Y Y G+ ER + + + +E +
Sbjct: 469 LDQY--------------------FYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKI 507
Query: 404 RNDNGNTTGCG-LIPDLYDSGVTIHSIKITATSSDMKTIAIPSTLNSSIIPLDVADYTFT 462
R+D+ G ++ L + + I L ++I+ F
Sbjct: 508 RHDSTAWNASGSILNTLQQ--LKFYKPYIC------DNDPKYERLVNAIL-------DFL 552
Query: 463 NDGKSIQMNLVN-PSTDLITFA 483
I+ NL+ TDL+ A
Sbjct: 553 ---PKIEENLICSKYTDLLRIA 571
Score = 39.1 bits (90), Expect = 0.003
Identities = 54/439 (12%), Positives = 109/439 (24%), Gaps = 136/439 (30%)
Query: 14 YTAAVVEYTSRNIILPDREWAARDLMESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPV 73
+ +Y ++I+ + + + + + I S ++D I+ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHII-------MSKD 59
Query: 74 PKRRADVKPYLITIPTPEDHAIPYQ---EPHK--YDKILTMLSKAAKDSNMYVVVNLFEI 128
L + + + E + Y +++ + +
Sbjct: 60 AVSGTL---RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------------ 104
Query: 129 VACPSDDQSSICRGQDRNYHYNTNLVFD-----RQGQIIAKYR----------------- 166
PS + R+ YN N VF R Q K R
Sbjct: 105 ---PSMMTRMYI--EQRDRLYNDNQVFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGV 158
Query: 167 ----KFNLFLEYAFDTTPQPEMITFNTDFGV---TFGTFTCFDILFPQPAVQLVKQKNIT 219
K + L+ Q +M DF + C P L + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNLK--NCNS-----PETVLEMLQKLL 206
Query: 220 DFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSS-NYNNP-------------AQYGGG 265
+ W S + + + + LL S Y N +
Sbjct: 207 -YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 266 SGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSSVVVPKSESHVVPLIPVPT--HHKNQLR 323
K+ LL +R + + + + +H + L
Sbjct: 266 C---------KI----------LLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKS 305
Query: 324 LLCDSSYRFFHCK------------PL------ESFSDEPKTTSTFSYSESKYGFSCSIE 365
LL ++ C+ P ES D T + + + IE
Sbjct: 306 LLL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIE 360
Query: 366 VTWSNKDPNNNMPSYKMFG 384
+ + +P +
Sbjct: 361 SSLNVLEPAEYRKMFDRLS 379
Score = 33.7 bits (76), Expect = 0.15
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 418 DLYDSGV----TIHSIKITATSSDMKTIAIPSTLNSSIIPLDVADYTFTND-GKSIQMNL 472
++ ++ + KI T+ + S ++ I LD T T D KS+ +
Sbjct: 252 NVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 473 VNPSTDLITFAVYKLPREV 491
++ LPREV
Sbjct: 311 LDCRPQ-------DLPREV 322
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 41.7 bits (98), Expect = 5e-04
Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 57/203 (28%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
+NA + + + + + VFPE L+G Y + ED +
Sbjct: 28 AANAASVLDMARACHDDGAALAVFPELTLSG------------Y-----SIEDV---LLQ 67
Query: 100 PHKYDKILTMLSK-AAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQ 158
D + L + +++ V+ +V P + I YNT +V +
Sbjct: 68 DSLLDAVEDALLDLVTESADLLPVL----VVGAPLRHRHRI---------YNTAVVI-HR 113
Query: 159 GQIIAKYRKFNL--------------------FLEYAFDTTPQPEMITFNTD--FGVTFG 196
G ++ K L + + F G
Sbjct: 114 GAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLH 173
Query: 197 TFTCFDILFPQPAVQLVKQKNIT 219
D+ P P T
Sbjct: 174 VEIAEDMFVPMPPSAEAALAGAT 196
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 40.7 bits (96), Expect = 0.001
Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 58/190 (30%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
E+N + + I+ A N +V+I+ PE + G Y ED +
Sbjct: 21 ENNVKNILDAIEEAKNANVEILCLPELCITG------------Y-----GCEDL---FLT 60
Query: 100 PHKYDKILTMLSKAAKDS-NMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQ 158
+ + + A ++ V + L P YN + +
Sbjct: 61 DWVAETAIEYCFEIAASCTDITVSLGL------PMRIAGIT---------YNCVCLVEN- 104
Query: 159 GQIIAKYRKFNL-----FLE--YAFDTTPQPEMITFNTDF-------------GVTFGTF 198
G + K L E + F P+ TF + G
Sbjct: 105 GIVKGFSAKQFLANEGVHYETRW-FTAWPRNHTTTFLYNDVKYPFGDVLYNVKDARIGFE 163
Query: 199 TCFDILFPQP 208
C D
Sbjct: 164 ICEDAWRTDR 173
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 259 PAQYGGGSGIYAGRQGIKVAVMPQYTGSQLLI 290
PA G + +Y+ R+GI+ +M + G Q+L
Sbjct: 222 PA--GAAAAVYSARKGIRTGLMGERFGGQVLD 251
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 29.4 bits (65), Expect = 3.1
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 3 QHARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMESNA 43
A + SR ++ + +++LP + + + S
Sbjct: 296 IDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLV 336
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 28.2 bits (64), Expect = 6.4
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 464 DGKSIQMNLVNPSTDLITFAVYKLP 488
DG M + D ++ KLP
Sbjct: 433 DG-GFSMLM----GDFLSVVQMKLP 452
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 28.2 bits (63), Expect = 7.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 12 EFYTAAVVEYTSRNIILPDREWAARDLMESNAE 44
YT A++E P W R +M+ +
Sbjct: 632 SLYTGAILEANLLPPPEPKESW--RRIMDELSV 662
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 27.9 bits (63), Expect = 7.5
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 265 GSGIYAGRQGIKVAVMPQYTGSQLLISRVPKKSSVVVPKSESHVVPLIPVPTHHKNQLRL 324
+ Y G + + + + +P + PK S +V L P L
Sbjct: 156 KTPAY-GV----LTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGALDDPGLFR 210
Query: 325 LCDSS 329
L +++
Sbjct: 211 LVEAA 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,477,448
Number of extensions: 442344
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 31
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)