RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10159
(492 letters)
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 57.0 bits (136), Expect = 1e-09
Identities = 37/245 (15%), Positives = 73/245 (29%), Gaps = 36/245 (14%)
Query: 39 MESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQ 98
++ N + ++I+ AS ++V PE G +
Sbjct: 16 LDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYN---------------FESREEVFDVA 60
Query: 99 EPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQ 158
+ + T L + A++ +Y+V + + + V
Sbjct: 61 QQIPEGETTTFLMELARELGLYIV----------------AGTAEKSGNYLYNSAVVVGP 104
Query: 159 GQIIAKYRKFNLFLEYAFDTTP-QPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKN 217
I KYRK +LF P F+ F G CFD FP+ A L +
Sbjct: 105 RGYIGKYRKIHLFYREKVFFEPGDLGFKVFDIGFA-KVGVMICFDWFFPESARTLALKGA 163
Query: 218 ITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSGIYAGRQGIKV 277
M P + + +++ + ++ G S I + +
Sbjct: 164 EIIAHPANLVMPYAPRAMPIRALENRVYTITAD--RVGEERGLKFIGKSLIA-SPKAEVL 220
Query: 278 AVMPQ 282
++ +
Sbjct: 221 SIASE 225
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 55.8 bits (133), Expect = 3e-09
Identities = 39/254 (15%), Positives = 72/254 (28%), Gaps = 45/254 (17%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
E + + ++ A++ + IVFPE L D E + E
Sbjct: 21 EQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD-----------EAELDSFYE 69
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
++ L + A + + + E + +NT+++ D+ G
Sbjct: 70 TEMPGPVVRPLFEKAAELGIGFNLGYAE-----------LVVEGGVKRRFNTSILVDKSG 118
Query: 160 QIIAKYRKFNLFLEYAFDT------------TPQPEMITFNTDFGVTFGTFTCFDILFPQ 207
+I+ KYRK +L ++ P G F D +P+
Sbjct: 119 KIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPE 178
Query: 208 PAVQLVKQK-----NITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSSNYNNPA-- 260
+ + + + + LT+ S N S A
Sbjct: 179 AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGM 238
Query: 261 ----QYGGGSGIYA 270
G S I A
Sbjct: 239 EENCMLLGHSCIVA 252
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 45.9 bits (107), Expect = 5e-06
Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 41/243 (16%)
Query: 40 ESNAEQYVRIIQNASNYDVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPYQE 99
E N + +I+ A +++ PEC +
Sbjct: 20 EKNFQAAKNMIERAGEKKCEMVFLPEC------------------FDFIGLNKNEQIDLA 61
Query: 100 PHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDRQG 159
+ + + A+ N+++ + +NT+L+ D G
Sbjct: 62 MATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAH-----------PWNTHLIIDSDG 110
Query: 160 QIIAKYRKFNLF---------LEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAV 210
A+Y K +LF L + + EMI G C+D+ FP+ ++
Sbjct: 111 VTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSL 170
Query: 211 QLVKQKNITDFVYTAA---WMSELPLLTAVTVHSSWAFSMDVNLLSSNYNNPAQYGGGSG 267
K+ +A + + +N Q G S
Sbjct: 171 WNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSM 230
Query: 268 IYA 270
+
Sbjct: 231 VVD 233
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 34.8 bits (78), Expect = 0.016
Identities = 31/237 (13%), Positives = 59/237 (24%), Gaps = 26/237 (10%)
Query: 40 ESNAEQYVRIIQNASNY--DVDIIVFPECGLAGTPVPKRRADVKPYLITIPTPEDHAIPY 97
+N ++ I+ A D ++V PEC +
Sbjct: 25 MANLQRAATFIERAMKEQPDTKLVVLPECFNSPYS---------------TDQFRKYSEV 69
Query: 98 QEPHKYDKILTMLSKAAKDSNMYVVVNLFEIVACPSDDQSSICRGQDRNYHYNTNLVFDR 157
P + + LS A + +V + +D + + +
Sbjct: 70 INPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVH 129
Query: 158 QGQIIAKYRKFNLFLEYAFDTTPQPEMITFNTDFGVTFGTFTCFDILFPQPAVQLVKQKN 217
+ E + T FGV F L +K
Sbjct: 130 LFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLS-----ARKG 184
Query: 218 ITDFVYTAAWMSELPLLTAVTVHSSWAFSMDVNLLSS----NYNNPAQYGGGSGIYA 270
+Y +A+ + L + S A V ++ N + G S +
Sbjct: 185 AFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVD 241
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 27.7 bits (60), Expect = 2.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 263 GGGSG-----IYAGRQGIKVAV--MPQYTGSQLLISRVPKK 296
GGGSG A R KVA+ + G+ + + VPKK
Sbjct: 8 GGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKK 48
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.9 bits (58), Expect = 5.8
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 263 GGGSG-----IYAGRQGIKVAV 279
G G G I + + G+K A+
Sbjct: 10 GAGPGGYVAAIKSAQLGLKTAL 31
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE)
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 144
Score = 26.3 bits (56), Expect = 6.0
Identities = 10/98 (10%), Positives = 19/98 (19%), Gaps = 3/98 (3%)
Query: 68 LAGTPVPKRRADVKPYLITIPTPEDHAIPYQEPHKYDKILTMLSKAAKDSNMYVVVNLFE 127
G P + + + I + +
Sbjct: 29 FKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLG---RYGN 85
Query: 128 IVACPSDDQSSICRGQDRNYHYNTNLVFDRQGQIIAKY 165
D + + Y V R+G I+ K
Sbjct: 86 PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 123
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 293
Score = 26.8 bits (59), Expect = 6.4
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 5 ARKSSSREFYTAAVVEYTSRNIILPDREWAARDLMES 41
A + SR ++ + +++LP + + + S
Sbjct: 243 AYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLS 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,824,002
Number of extensions: 85633
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 10
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)